BLASTP 2.2.16 [Mar-25-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= Q9HB50
         (74 letters)

Database: para.tmp/uniprot.xeno.fa 
           6,121,393 sequences; 1,813,306,667 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A6BM01 9767 Balaenoptera acutorostrata                                122   6e-27
B1NL88 9544 Macaca mulatta                                             51   2e-05

>A6BM01 9767 Balaenoptera acutorostrata
          Length = 503

 Score =  122 bits (306), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 53/73 (72%), Positives = 63/73 (86%)

Query: 1  MDLIPNFAMETWVLVATSLVLLYIYGTHSHKLFKKLGIPGPTPLPFLGTILFYLRGLWNF 60
          MDLIP+F++ETWVL+ATSLVLLY+YGT+SH LFKKLGIPGP PLP+ G IL Y +GLW F
Sbjct: 1  MDLIPSFSVETWVLLATSLVLLYLYGTYSHGLFKKLGIPGPRPLPYFGNILSYRKGLWEF 60

Query: 61 DRECNEKYGEMWG 73
          D  C +KYG+MWG
Sbjct: 61 DNRCFKKYGKMWG 73


>B1NL88 9544 Macaca mulatta
          Length = 454

 Score = 50.8 bits (120), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/24 (95%), Positives = 24/24 (100%)

Query: 1  MDLIPNFAMETWVLVATSLVLLYI 24
          MDLIPNFAMETWVLVATSLVLLY+
Sbjct: 1  MDLIPNFAMETWVLVATSLVLLYM 24


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

A6BM01 9767 Balaenoptera acutorostrata                                150   3e-35
B1NLA2 9598 Pan troglodytes                                            50   3e-05
B1NL88 9544 Macaca mulatta                                             48   1e-04

Sequences not found previously or not previously below threshold:

P47787 9823 Sus scrofa                                                 79   6e-14
Q2PG45 9541 Macaca fascicularis                                        78   1e-13

>A6BM01 9767 Balaenoptera acutorostrata
          Length = 503

 Score =  150 bits (379), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 53/73 (72%), Positives = 63/73 (86%)

Query: 1  MDLIPNFAMETWVLVATSLVLLYIYGTHSHKLFKKLGIPGPTPLPFLGTILFYLRGLWNF 60
          MDLIP+F++ETWVL+ATSLVLLY+YGT+SH LFKKLGIPGP PLP+ G IL Y +GLW F
Sbjct: 1  MDLIPSFSVETWVLLATSLVLLYLYGTYSHGLFKKLGIPGPRPLPYFGNILSYRKGLWEF 60

Query: 61 DRECNEKYGEMWG 73
          D  C +KYG+MWG
Sbjct: 61 DNRCFKKYGKMWG 73


>P47787 9823 Sus scrofa
          Length = 534

 Score = 79.2 bits (195), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 27/50 (54%)

Query: 24 IYGTHSHKLFKKLGIPGPTPLPFLGTILFYLRGLWNFDRECNEKYGEMWG 73
           Y T +    +KLGI  P P PF+G + F+ +G W    E  ++YG + G
Sbjct: 30 WYSTSAFSRLEKLGIRHPKPSPFIGNLTFFRQGFWESHMELRKQYGPLSG 79


>Q2PG45 9541 Macaca fascicularis
          Length = 534

 Score = 78.5 bits (193), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 27/50 (54%)

Query: 24 IYGTHSHKLFKKLGIPGPTPLPFLGTILFYLRGLWNFDRECNEKYGEMWG 73
           Y T +    +KLG+  P P PF+G ++F+ +G W    E  + YG + G
Sbjct: 31 WYSTSAFSRLEKLGLRHPKPSPFIGNLMFFRQGFWESQMELRKLYGPLCG 80


>B1NLA2 9598 Pan troglodytes
          Length = 33

 Score = 50.3 bits (120), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/33 (78%), Positives = 28/33 (84%)

Query: 1  MDLIPNFAMETWVLVATSLVLLYIYGTHSHKLF 33
          MDLIPNFAMETWVLVATSLVLLYI  + S+  F
Sbjct: 1  MDLIPNFAMETWVLVATSLVLLYITLSISYPSF 33


>B1NL88 9544 Macaca mulatta
          Length = 454

 Score = 48.4 bits (115), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/24 (95%), Positives = 24/24 (100%)

Query: 1  MDLIPNFAMETWVLVATSLVLLYI 24
          MDLIPNFAMETWVLVATSLVLLY+
Sbjct: 1  MDLIPNFAMETWVLVATSLVLLYM 24


Searching..................................................done


Results from round 3


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

A6BM01 9767 Balaenoptera acutorostrata                                132   5e-30
B1NL88 9544 Macaca mulatta                                             48   2e-04
B1NLA2 9598 Pan troglodytes                                            44   0.002

Sequences not found previously or not previously below threshold:

Q0GBX3 7719 Ciona intestinalis                                         63   4e-09
Q9QZ50 10036 Mesocricetus auratus                                      62   1e-08

>A6BM01 9767 Balaenoptera acutorostrata
          Length = 503

 Score =  132 bits (334), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 53/73 (72%), Positives = 63/73 (86%)

Query: 1  MDLIPNFAMETWVLVATSLVLLYIYGTHSHKLFKKLGIPGPTPLPFLGTILFYLRGLWNF 60
          MDLIP+F++ETWVL+ATSLVLLY+YGT+SH LFKKLGIPGP PLP+ G IL Y +GLW F
Sbjct: 1  MDLIPSFSVETWVLLATSLVLLYLYGTYSHGLFKKLGIPGPRPLPYFGNILSYRKGLWEF 60

Query: 61 DRECNEKYGEMWG 73
          D  C +KYG+MWG
Sbjct: 61 DNRCFKKYGKMWG 73


>Q0GBX3 7719 Ciona intestinalis
          Length = 509

 Score = 63.1 bits (153), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 7  FAMETWVLVATSLVLLYIYGTHSHKLFKKLGIPGPTPLPF-LGTILFYLR---GLWNFDR 62
           ++ETW+L+ TS +L+ IY     ++ K + IP   P    +G ++  ++    ++    
Sbjct: 8  LSLETWILILTSFILVRIYIHKKWQVLKNINIPHDPPTILGVGNMMGIIKDPNQMFLSYF 67

Query: 63 ECNEKYGEMWG 73
          +  +KYG ++G
Sbjct: 68 KMKKKYGLVYG 78


>Q9QZ50 10036 Mesocricetus auratus
          Length = 494

 Score = 61.6 bits (149), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 8  AMETWVLVATSLVLLYIYGTHSHKLFKKLGIPGPTPLPFLGTILFYL-RGLWNFDRECNE 66
          +    V V   LV+L +      +       PGPTPLPF+G  L      ++N   + +E
Sbjct: 4  SGLLLVTVLAFLVVLILMSVWKQRKLSGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISE 63

Query: 67 KYGEM 71
          +YG +
Sbjct: 64 RYGPV 68


  Database: para.tmp/uniprot.xeno.fa
    Posted date:  Apr 11, 2009  1:32 PM
  Number of letters in database: 999,999,610
  Number of sequences in database:  3,169,277
  
  Database: para.tmp/uniprot.xeno.fa.01
    Posted date:  Apr 11, 2009  1:35 PM
  Number of letters in database: 813,307,057
  Number of sequences in database:  2,952,116
  
Lambda     K      H
   0.314    0.182    0.600 

Lambda     K      H
   0.267   0.0553    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,229,960,682
Number of Sequences: 6121393
Number of extensions: 63250405
Number of successful extensions: 322599
Number of sequences better than 10.0: 500
Number of HSP's better than 10.0 without gapping: 2278
Number of HSP's successfully gapped in prelim test: 2004
Number of HSP's that attempted gapping in prelim test: 319425
Number of HSP's gapped (non-prelim): 4375
length of query: 74
length of database: 1,813,306,667
effective HSP length: 45
effective length of query: 29
effective length of database: 1,537,843,982
effective search space: 44597475478
effective search space used: 44597475478
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.6 bits)
S2: 73 (32.3 bits)