cdsCount; ++i)
{
if (i>0) printf(",");
printf("%d", ev->cdsStarts[i]%3 + 1);
}
webPrintLinkCellEnd();
webPrintLinkTableNewRow();
}
sqlFreeResult(&sr);
webPrintLinkTableEnd();
printf("This table shows CDS predictions for this transcript from a number of "
"sources including alignments against UniProtKB proteins, alignments against Genbank "
"mRNAs with CDS regions annotated by the sequence submitter, and "
"Victor Solovyev's bestorf program. Each prediction is assigned an ad-hoc score "
"score is based on several factors including the quality of "
"any associated alignments, the quality of the source, and the length of the "
"prediction. For RefSeq transcripts with annotated CDSs the ad-hoc score "
"is over a million unless there are severe problems mapping the mRNA to the "
"genome. In other cases the score generally ranges from 0 to 50,000. "
"The highest scoring prediction in this table is used to define the CDS "
"boundaries for this transcript.If no score is 2000 or more, the transcript "
"is considered non-coding. In cases where the CDS is subject to "
"nonsense-mediated decay the CDS is removed. The CDS is also removed "
"from transcripts when evidence points to it being in an artifact of an "
"incompletely processed transcript. Specifically if the CDS is entirely "
"enclosed in the 3' UTR or an intron of a refSeq or other high quality "
"transcript, the CDS is removed.");
}
else
{
printf("no significant CDS prediction found, likely %s is noncoding",
geneName);
}
}
hFreeConn(&conn);
}