/* bdgpGeneInfo.h was originally generated by the autoSql program, which also * generated bdgpGeneInfo.c and bdgpGeneInfo.sql. This header links the database and * the RAM representation of objects. */ #ifndef BDGPGENEINFO_H #define BDGPGENEINFO_H #define BDGPGENEINFO_NUM_COLS 6 struct bdgpGeneInfo /* Berkeley Drosophile Genome Project Protein-Coding Genes track additional information */ { struct bdgpGeneInfo *next; /* Next in singly linked list. */ char *bdgpName; /* BDGP annotation gene name */ char *flyBaseId; /* FlyBase FBgn ID */ char *go; /* comma-sep list of GO numeric IDs */ char *symbol; /* symbolic gene name */ char *cytorange; /* cytorange */ char *cdna_clone; /* comma-sep list of cdna clone IDs */ }; void bdgpGeneInfoStaticLoad(char **row, struct bdgpGeneInfo *ret); /* Load a row from bdgpGeneInfo table into ret. The contents of ret will * be replaced at the next call to this function. */ struct bdgpGeneInfo *bdgpGeneInfoLoad(char **row); /* Load a bdgpGeneInfo from row fetched with select * from bdgpGeneInfo * from database. Dispose of this with bdgpGeneInfoFree(). */ struct bdgpGeneInfo *bdgpGeneInfoLoadAll(char *fileName); /* Load all bdgpGeneInfo from whitespace-separated file. * Dispose of this with bdgpGeneInfoFreeList(). */ struct bdgpGeneInfo *bdgpGeneInfoLoadAllByChar(char *fileName, char chopper); /* Load all bdgpGeneInfo from chopper separated file. * Dispose of this with bdgpGeneInfoFreeList(). */ #define bdgpGeneInfoLoadAllByTab(a) bdgpGeneInfoLoadAllByChar(a, '\t'); /* Load all bdgpGeneInfo from tab separated file. * Dispose of this with bdgpGeneInfoFreeList(). */ struct bdgpGeneInfo *bdgpGeneInfoCommaIn(char **pS, struct bdgpGeneInfo *ret); /* Create a bdgpGeneInfo out of a comma separated string. * This will fill in ret if non-null, otherwise will * return a new bdgpGeneInfo */ void bdgpGeneInfoFree(struct bdgpGeneInfo **pEl); /* Free a single dynamically allocated bdgpGeneInfo such as created * with bdgpGeneInfoLoad(). */ void bdgpGeneInfoFreeList(struct bdgpGeneInfo **pList); /* Free a list of dynamically allocated bdgpGeneInfo's */ void bdgpGeneInfoOutput(struct bdgpGeneInfo *el, FILE *f, char sep, char lastSep); /* Print out bdgpGeneInfo. Separate fields with sep. Follow last field with lastSep. */ #define bdgpGeneInfoTabOut(el,f) bdgpGeneInfoOutput(el,f,'\t','\n'); /* Print out bdgpGeneInfo as a line in a tab-separated file. */ #define bdgpGeneInfoCommaOut(el,f) bdgpGeneInfoOutput(el,f,',',','); /* Print out bdgpGeneInfo as a comma separated list including final comma. */ /* -------------------------------- End autoSql Generated Code -------------------------------- */ #endif /* BDGPGENEINFO_H */