/* bgiGeneInfo.h was originally generated by the autoSql program, which also * generated bgiGeneInfo.c and bgiGeneInfo.sql. This header links the database and * the RAM representation of objects. */ #ifndef BGIGENEINFO_H #define BGIGENEINFO_H #define BGIGENEINFO_NUM_COLS 4 struct bgiGeneInfo /* Beijing Genomics Institute Genes track additional information */ { struct bgiGeneInfo *next; /* Next in singly linked list. */ char *name; /* BGI annotation gene name */ char *source; /* Source of gene annotation */ char *go; /* comma-sep list of GO numeric IDs */ char *ipr; /* semicolon-sep list of IPR numeric IDs and comments */ }; void bgiGeneInfoStaticLoad(char **row, struct bgiGeneInfo *ret); /* Load a row from bgiGeneInfo table into ret. The contents of ret will * be replaced at the next call to this function. */ struct bgiGeneInfo *bgiGeneInfoLoad(char **row); /* Load a bgiGeneInfo from row fetched with select * from bgiGeneInfo * from database. Dispose of this with bgiGeneInfoFree(). */ struct bgiGeneInfo *bgiGeneInfoLoadAll(char *fileName); /* Load all bgiGeneInfo from whitespace-separated file. * Dispose of this with bgiGeneInfoFreeList(). */ struct bgiGeneInfo *bgiGeneInfoLoadAllByChar(char *fileName, char chopper); /* Load all bgiGeneInfo from chopper separated file. * Dispose of this with bgiGeneInfoFreeList(). */ #define bgiGeneInfoLoadAllByTab(a) bgiGeneInfoLoadAllByChar(a, '\t'); /* Load all bgiGeneInfo from tab separated file. * Dispose of this with bgiGeneInfoFreeList(). */ struct bgiGeneInfo *bgiGeneInfoCommaIn(char **pS, struct bgiGeneInfo *ret); /* Create a bgiGeneInfo out of a comma separated string. * This will fill in ret if non-null, otherwise will * return a new bgiGeneInfo */ void bgiGeneInfoFree(struct bgiGeneInfo **pEl); /* Free a single dynamically allocated bgiGeneInfo such as created * with bgiGeneInfoLoad(). */ void bgiGeneInfoFreeList(struct bgiGeneInfo **pList); /* Free a list of dynamically allocated bgiGeneInfo's */ void bgiGeneInfoOutput(struct bgiGeneInfo *el, FILE *f, char sep, char lastSep); /* Print out bgiGeneInfo. Separate fields with sep. Follow last field with lastSep. */ #define bgiGeneInfoTabOut(el,f) bgiGeneInfoOutput(el,f,'\t','\n'); /* Print out bgiGeneInfo as a line in a tab-separated file. */ #define bgiGeneInfoCommaOut(el,f) bgiGeneInfoOutput(el,f,',',','); /* Print out bgiGeneInfo as a comma separated list including final comma. */ /* -------------------------------- End autoSql Generated Code -------------------------------- */ #endif /* BGIGENEINFO_H */