/* encodeErge5race.h was originally generated by the autoSql program, which also * generated encodeErge5race.c and encodeErge5race.sql. This header links the database and * the RAM representation of objects. */ #ifndef ENCODEERGE5RACE_H #define ENCODEERGE5RACE_H #define ENCODEERGE5RACE_NUM_COLS 14 struct encodeErge5race /* ENCODE experimental data from dbERGEII */ { struct encodeErge5race *next; /* Next in singly linked list. */ char *chrom; /* Human chromosome */ unsigned chromStart; /* Start position in chromosome */ unsigned chromEnd; /* End position in chromosome */ char *name; /* Name of read - up to 255 characters */ unsigned score; /* Score from 0-1000. 1000 is best */ char strand[2]; /* Value should be + or - */ unsigned thickStart; /* Start of where display should be thick (start codon) */ unsigned thickEnd; /* End of where display should be thick (stop codon) */ unsigned reserved; /* Always zero for now */ unsigned blockCount; /* Number of separate blocks (regions without gaps) */ unsigned *blockSizes; /* Comma separated list of block sizes */ unsigned *chromStarts; /* Start position of each block in relative to chromStart */ char *Id; /* dbERGEII Id */ char *color; /* RGB color values */ }; struct encodeErge5race *encodeErge5raceLoad(char **row); /* Load a encodeErge5race from row fetched with select * from encodeErge5race * from database. Dispose of this with encodeErge5raceFree(). */ struct encodeErge5race *encodeErge5raceLoadAll(char *fileName); /* Load all encodeErge5race from whitespace-separated file. * Dispose of this with encodeErge5raceFreeList(). */ struct encodeErge5race *encodeErge5raceLoadAllByChar(char *fileName, char chopper); /* Load all encodeErge5race from chopper separated file. * Dispose of this with encodeErge5raceFreeList(). */ #define encodeErge5raceLoadAllByTab(a) encodeErge5raceLoadAllByChar(a, '\t'); /* Load all encodeErge5race from tab separated file. * Dispose of this with encodeErge5raceFreeList(). */ struct encodeErge5race *encodeErge5raceCommaIn(char **pS, struct encodeErge5race *ret); /* Create a encodeErge5race out of a comma separated string. * This will fill in ret if non-null, otherwise will * return a new encodeErge5race */ void encodeErge5raceFree(struct encodeErge5race **pEl); /* Free a single dynamically allocated encodeErge5race such as created * with encodeErge5raceLoad(). */ void encodeErge5raceFreeList(struct encodeErge5race **pList); /* Free a list of dynamically allocated encodeErge5race's */ void encodeErge5raceOutput(struct encodeErge5race *el, FILE *f, char sep, char lastSep); /* Print out encodeErge5race. Separate fields with sep. Follow last field with lastSep. */ #define encodeErge5raceTabOut(el,f) encodeErge5raceOutput(el,f,'\t','\n'); /* Print out encodeErge5race as a line in a tab-separated file. */ #define encodeErge5raceCommaOut(el,f) encodeErge5raceOutput(el,f,',',','); /* Print out encodeErge5race as a comma separated list including final comma. */ /* -------------------------------- End autoSql Generated Code -------------------------------- */ #endif /* ENCODEERGE5RACE_H */