/* encodeErgeExpProm.h was originally generated by the autoSql program, which also * generated encodeErgeExpProm.c and encodeErgeExpProm.sql. This header links the database and * the RAM representation of objects. */ #ifndef ENCODEERGEEXPPROM_H #define ENCODEERGEEXPPROM_H #define ENCODEERGEEXPPROM_NUM_COLS 14 struct encodeErgeExpProm /* ENCODE experimental data from dbERGEII */ { struct encodeErgeExpProm *next; /* Next in singly linked list. */ char *chrom; /* Human chromosome */ unsigned chromStart; /* Start position in chromosome */ unsigned chromEnd; /* End position in chromosome */ char *name; /* Name of read - up to 255 characters */ unsigned score; /* Score from 0-1000. 1000 is best */ char strand[2]; /* Value should be + or - */ unsigned thickStart; /* Start of where display should be thick (start codon) */ unsigned thickEnd; /* End of where display should be thick (stop codon) */ unsigned reserved; /* Always zero for now */ unsigned blockCount; /* Number of separate blocks (regions without gaps) */ unsigned *blockSizes; /* Comma separated list of block sizes */ unsigned *chromStarts; /* Start position of each block in relative to chromStart */ char *Id; /* dbERGEII Id */ char *color; /* RGB color values */ }; struct encodeErgeExpProm *encodeErgeExpPromLoad(char **row); /* Load a encodeErgeExpProm from row fetched with select * from encodeErgeExpProm * from database. Dispose of this with encodeErgeExpPromFree(). */ struct encodeErgeExpProm *encodeErgeExpPromLoadAll(char *fileName); /* Load all encodeErgeExpProm from whitespace-separated file. * Dispose of this with encodeErgeExpPromFreeList(). */ struct encodeErgeExpProm *encodeErgeExpPromLoadAllByChar(char *fileName, char chopper); /* Load all encodeErgeExpProm from chopper separated file. * Dispose of this with encodeErgeExpPromFreeList(). */ #define encodeErgeExpPromLoadAllByTab(a) encodeErgeExpPromLoadAllByChar(a, '\t'); /* Load all encodeErgeExpProm from tab separated file. * Dispose of this with encodeErgeExpPromFreeList(). */ struct encodeErgeExpProm *encodeErgeExpPromCommaIn(char **pS, struct encodeErgeExpProm *ret); /* Create a encodeErgeExpProm out of a comma separated string. * This will fill in ret if non-null, otherwise will * return a new encodeErgeExpProm */ void encodeErgeExpPromFree(struct encodeErgeExpProm **pEl); /* Free a single dynamically allocated encodeErgeExpProm such as created * with encodeErgeExpPromLoad(). */ void encodeErgeExpPromFreeList(struct encodeErgeExpProm **pList); /* Free a list of dynamically allocated encodeErgeExpProm's */ void encodeErgeExpPromOutput(struct encodeErgeExpProm *el, FILE *f, char sep, char lastSep); /* Print out encodeErgeExpProm. Separate fields with sep. Follow last field with lastSep. */ #define encodeErgeExpPromTabOut(el,f) encodeErgeExpPromOutput(el,f,'\t','\n'); /* Print out encodeErgeExpProm as a line in a tab-separated file. */ #define encodeErgeExpPromCommaOut(el,f) encodeErgeExpPromOutput(el,f,',',','); /* Print out encodeErgeExpProm as a comma separated list including final comma. */ /* -------------------------------- End autoSql Generated Code -------------------------------- */ #endif /* ENCODEERGEEXPPROM_H */