/* encodeErgeMethProm.h was originally generated by the autoSql program, which also * generated encodeErgeMethProm.c and encodeErgeMethProm.sql. This header links the database and * the RAM representation of objects. */ #ifndef ENCODEERGEMETHPROM_H #define ENCODEERGEMETHPROM_H #define ENCODEERGEMETHPROM_NUM_COLS 14 struct encodeErgeMethProm /* ENCODE experimental data from dbERGEII */ { struct encodeErgeMethProm *next; /* Next in singly linked list. */ char *chrom; /* Human chromosome */ unsigned chromStart; /* Start position in chromosome */ unsigned chromEnd; /* End position in chromosome */ char *name; /* Name of read - up to 255 characters */ unsigned score; /* Score from 0-1000. 1000 is best */ char strand[2]; /* Value should be + or - */ unsigned thickStart; /* Start of where display should be thick (start codon) */ unsigned thickEnd; /* End of where display should be thick (stop codon) */ unsigned reserved; /* Always zero for now */ unsigned blockCount; /* Number of separate blocks (regions without gaps) */ unsigned *blockSizes; /* Comma separated list of block sizes */ unsigned *chromStarts; /* Start position of each block in relative to chromStart */ char *Id; /* dbERGEII Id */ char *color; /* RGB color values */ }; struct encodeErgeMethProm *encodeErgeMethPromLoad(char **row); /* Load a encodeErgeMethProm from row fetched with select * from encodeErgeMethProm * from database. Dispose of this with encodeErgeMethPromFree(). */ struct encodeErgeMethProm *encodeErgeMethPromLoadAll(char *fileName); /* Load all encodeErgeMethProm from whitespace-separated file. * Dispose of this with encodeErgeMethPromFreeList(). */ struct encodeErgeMethProm *encodeErgeMethPromLoadAllByChar(char *fileName, char chopper); /* Load all encodeErgeMethProm from chopper separated file. * Dispose of this with encodeErgeMethPromFreeList(). */ #define encodeErgeMethPromLoadAllByTab(a) encodeErgeMethPromLoadAllByChar(a, '\t'); /* Load all encodeErgeMethProm from tab separated file. * Dispose of this with encodeErgeMethPromFreeList(). */ struct encodeErgeMethProm *encodeErgeMethPromCommaIn(char **pS, struct encodeErgeMethProm *ret); /* Create a encodeErgeMethProm out of a comma separated string. * This will fill in ret if non-null, otherwise will * return a new encodeErgeMethProm */ void encodeErgeMethPromFree(struct encodeErgeMethProm **pEl); /* Free a single dynamically allocated encodeErgeMethProm such as created * with encodeErgeMethPromLoad(). */ void encodeErgeMethPromFreeList(struct encodeErgeMethProm **pList); /* Free a list of dynamically allocated encodeErgeMethProm's */ void encodeErgeMethPromOutput(struct encodeErgeMethProm *el, FILE *f, char sep, char lastSep); /* Print out encodeErgeMethProm. Separate fields with sep. Follow last field with lastSep. */ #define encodeErgeMethPromTabOut(el,f) encodeErgeMethPromOutput(el,f,'\t','\n'); /* Print out encodeErgeMethProm as a line in a tab-separated file. */ #define encodeErgeMethPromCommaOut(el,f) encodeErgeMethPromOutput(el,f,',',','); /* Print out encodeErgeMethProm as a comma separated list including final comma. */ /* -------------------------------- End autoSql Generated Code -------------------------------- */ #endif /* ENCODEERGEMETHPROM_H */