/* wgEncodeGencodePolyAFeature.h was originally generated by the autoSql program, which also * generated wgEncodeGencodePolyAFeature.c and wgEncodeGencodePolyAFeature.sql. This header links the database and * the RAM representation of objects. */ #ifndef WGENCODEGENCODEPOLYAFEATURE_H #define WGENCODEGENCODEPOLYAFEATURE_H #define WGENCODEGENCODEPOLYAFEATURE_NUM_COLS 8 enum wgEncodeGencodePolyAFeatureFeature { wgEncodeGencodePolyAFeaturePolyA_signal = 0, wgEncodeGencodePolyAFeaturePolyA_site = 1, wgEncodeGencodePolyAFeaturePseudo_polyA = 2, }; struct wgEncodeGencodePolyAFeature /* GENCODE PolyA feature annotation in transcript and genome */ { struct wgEncodeGencodePolyAFeature *next; /* Next in singly linked list. */ char *transcriptId; /* GENCODE transcript identifier */ int transcriptStart; /* starting position in transcript: */ int transcriptEnd; /* ending position in transcript: */ char *chrom; /* chromosome */ int chromStart; /* start in chromosome */ int endStart; /* end in chromosome */ char strand; /* strand */ enum wgEncodeGencodePolyAFeatureFeature feature; /* type of annotation */ }; void wgEncodeGencodePolyAFeatureStaticLoad(char **row, struct wgEncodeGencodePolyAFeature *ret); /* Load a row from wgEncodeGencodePolyAFeature table into ret. The contents of ret will * be replaced at the next call to this function. */ struct wgEncodeGencodePolyAFeature *wgEncodeGencodePolyAFeatureLoad(char **row); /* Load a wgEncodeGencodePolyAFeature from row fetched with select * from wgEncodeGencodePolyAFeature * from database. Dispose of this with wgEncodeGencodePolyAFeatureFree(). */ struct wgEncodeGencodePolyAFeature *wgEncodeGencodePolyAFeatureLoadAll(char *fileName); /* Load all wgEncodeGencodePolyAFeature from whitespace-separated file. * Dispose of this with wgEncodeGencodePolyAFeatureFreeList(). */ struct wgEncodeGencodePolyAFeature *wgEncodeGencodePolyAFeatureLoadAllByChar(char *fileName, char chopper); /* Load all wgEncodeGencodePolyAFeature from chopper separated file. * Dispose of this with wgEncodeGencodePolyAFeatureFreeList(). */ #define wgEncodeGencodePolyAFeatureLoadAllByTab(a) wgEncodeGencodePolyAFeatureLoadAllByChar(a, '\t'); /* Load all wgEncodeGencodePolyAFeature from tab separated file. * Dispose of this with wgEncodeGencodePolyAFeatureFreeList(). */ struct wgEncodeGencodePolyAFeature *wgEncodeGencodePolyAFeatureCommaIn(char **pS, struct wgEncodeGencodePolyAFeature *ret); /* Create a wgEncodeGencodePolyAFeature out of a comma separated string. * This will fill in ret if non-null, otherwise will * return a new wgEncodeGencodePolyAFeature */ void wgEncodeGencodePolyAFeatureFree(struct wgEncodeGencodePolyAFeature **pEl); /* Free a single dynamically allocated wgEncodeGencodePolyAFeature such as created * with wgEncodeGencodePolyAFeatureLoad(). */ void wgEncodeGencodePolyAFeatureFreeList(struct wgEncodeGencodePolyAFeature **pList); /* Free a list of dynamically allocated wgEncodeGencodePolyAFeature's */ void wgEncodeGencodePolyAFeatureOutput(struct wgEncodeGencodePolyAFeature *el, FILE *f, char sep, char lastSep); /* Print out wgEncodeGencodePolyAFeature. Separate fields with sep. Follow last field with lastSep. */ #define wgEncodeGencodePolyAFeatureTabOut(el,f) wgEncodeGencodePolyAFeatureOutput(el,f,'\t','\n'); /* Print out wgEncodeGencodePolyAFeature as a line in a tab-separated file. */ #define wgEncodeGencodePolyAFeatureCommaOut(el,f) wgEncodeGencodePolyAFeatureOutput(el,f,',',','); /* Print out wgEncodeGencodePolyAFeature as a comma separated list including final comma. */ /* -------------------------------- End autoSql Generated Code -------------------------------- */ #endif /* WGENCODEGENCODEPOLYAFEATURE_H */