/* sangerGeneToWBGeneID.h was originally generated by the autoSql program, which also * generated sangerGeneToWBGeneID.c and sangerGeneToWBGeneID.sql. This header links the database and * the RAM representation of objects. */ #ifndef SANGERGENETOWBGENEID_H #define SANGERGENETOWBGENEID_H #ifndef JKSQL_H #include "jksql.h" #endif #define SANGERGENETOWBGENEID_NUM_COLS 2 struct sangerGeneToWBGeneID /* sanger gene names to WormBase Gene IDs translation */ { struct sangerGeneToWBGeneID *next; /* Next in singly linked list. */ char *sangerGene; /* sangerGene name */ char *WBGeneID; /* WormBase Gene ID */ }; void sangerGeneToWBGeneIDStaticLoad(char **row, struct sangerGeneToWBGeneID *ret); /* Load a row from sangerGeneToWBGeneID table into ret. The contents of ret will * be replaced at the next call to this function. */ struct sangerGeneToWBGeneID *sangerGeneToWBGeneIDLoad(char **row); /* Load a sangerGeneToWBGeneID from row fetched with select * from sangerGeneToWBGeneID * from database. Dispose of this with sangerGeneToWBGeneIDFree(). */ struct sangerGeneToWBGeneID *sangerGeneToWBGeneIDLoadAll(char *fileName); /* Load all sangerGeneToWBGeneID from whitespace-separated file. * Dispose of this with sangerGeneToWBGeneIDFreeList(). */ struct sangerGeneToWBGeneID *sangerGeneToWBGeneIDLoadAllByChar(char *fileName, char chopper); /* Load all sangerGeneToWBGeneID from chopper separated file. * Dispose of this with sangerGeneToWBGeneIDFreeList(). */ #define sangerGeneToWBGeneIDLoadAllByTab(a) sangerGeneToWBGeneIDLoadAllByChar(a, '\t'); /* Load all sangerGeneToWBGeneID from tab separated file. * Dispose of this with sangerGeneToWBGeneIDFreeList(). */ struct sangerGeneToWBGeneID *sangerGeneToWBGeneIDLoadByQuery(struct sqlConnection *conn, char *query); /* Load all sangerGeneToWBGeneID from table that satisfy the query given. * Where query is of the form 'select * from example where something=something' * or 'select example.* from example, anotherTable where example.something = * anotherTable.something'. * Dispose of this with sangerGeneToWBGeneIDFreeList(). */ void sangerGeneToWBGeneIDSaveToDb(struct sqlConnection *conn, struct sangerGeneToWBGeneID *el, char *tableName, int updateSize); /* Save sangerGeneToWBGeneID as a row to the table specified by tableName. * As blob fields may be arbitrary size updateSize specifies the approx size * of a string that would contain the entire query. Arrays of native types are * converted to comma separated strings and loaded as such, User defined types are * inserted as NULL. Note that strings must be escaped to allow insertion into the database. * For example "autosql's features include" --> "autosql\'s features include" * If worried about this use sangerGeneToWBGeneIDSaveToDbEscaped() */ void sangerGeneToWBGeneIDSaveToDbEscaped(struct sqlConnection *conn, struct sangerGeneToWBGeneID *el, char *tableName, int updateSize); /* Save sangerGeneToWBGeneID as a row to the table specified by tableName. * As blob fields may be arbitrary size updateSize specifies the approx size. * of a string that would contain the entire query. Automatically * escapes all simple strings (not arrays of string) but may be slower than sangerGeneToWBGeneIDSaveToDb(). * For example automatically copies and converts: * "autosql's features include" --> "autosql\'s features include" * before inserting into database. */ struct sangerGeneToWBGeneID *sangerGeneToWBGeneIDCommaIn(char **pS, struct sangerGeneToWBGeneID *ret); /* Create a sangerGeneToWBGeneID out of a comma separated string. * This will fill in ret if non-null, otherwise will * return a new sangerGeneToWBGeneID */ void sangerGeneToWBGeneIDFree(struct sangerGeneToWBGeneID **pEl); /* Free a single dynamically allocated sangerGeneToWBGeneID such as created * with sangerGeneToWBGeneIDLoad(). */ void sangerGeneToWBGeneIDFreeList(struct sangerGeneToWBGeneID **pList); /* Free a list of dynamically allocated sangerGeneToWBGeneID's */ void sangerGeneToWBGeneIDOutput(struct sangerGeneToWBGeneID *el, FILE *f, char sep, char lastSep); /* Print out sangerGeneToWBGeneID. Separate fields with sep. Follow last field with lastSep. */ #define sangerGeneToWBGeneIDTabOut(el,f) sangerGeneToWBGeneIDOutput(el,f,'\t','\n'); /* Print out sangerGeneToWBGeneID as a line in a tab-separated file. */ #define sangerGeneToWBGeneIDCommaOut(el,f) sangerGeneToWBGeneIDOutput(el,f,',',','); /* Print out sangerGeneToWBGeneID as a comma separated list including final comma. */ /* -------------------------------- End autoSql Generated Code -------------------------------- */ #endif /* SANGERGENETOWBGENEID_H */