Settings for starting blat servers translated server: gfServer start blatX 17778 -trans -mask -log=trans.log *.2bit untranslated server: gfServer start blatX 17779 -log=untrans.log *.2bit untranslated server plus PCR server: gfServer start blatX 17779 -stepSize=5 -log=untrans.log *.2bit