### dukeUtaUncCrawford.txt wrangler notes for all submissions select id,name,status, user_id from projects where name like "Duke%" or name like "UNC%" or name like "UTA%"; select id,name,status, user_id from projects where user_id = 17; +-----+------------------------------------+------------+ | id | name | status | +-----+------------------------------------+------------+ | 31 | Duke DNase-Seq GM12878 20081031 | displayed | | 32 | UNC FAIRE-Seq GM12878 20081031 | superceded | | 33 | UTA ChIP-Seq CTCF GM12878 20081031 | superceded | | 34 | UTA Input GM12878 20081031 | displayed | | 79 | Duke DNase-Seq GM12878 20081121 | displayed | | 80 | UNC FAIRE-Seq GM12878 20081121 | displayed | | 104 | Duke ExtraTracks 20081201 | displayed | | 109 | UTA Input K562 20081204 | displayed | | 112 | Duke DNase-Seq K562 20081206 | displayed | | 113 | UNC FAIRE-Seq K562 20081206 | displayed | | 114 | Duke DNase-Seq GM12878 20081208 | displayed | | 115 | UNC FAIRE-Seq GM12878 20081208 | displayed | | 116 | Duke DNase-Seq K562 20081208 | displayed | | 117 | UNC FAIRE-Seq K562 20081208 | displayed | | 127 | Duke DNase-Seq K562 20081210 | displayed | | 131 | Duke DNase-Seq GM12878 20081211 | displayed | | 228 | UTA ChIP-Seq CTCF GM12878 20090224 | displayed | | 231 | UNC FAIRE-Seq GM12878 20090224 | displayed | | 233 | Duke DNase-Seq GM12878 20090225 | displayed | | 234 | UNC FAIRE-Seq K562 20090225 | displayed | | 235 | Duke DNase-Seq K562 20090225 | displayed | | 244 | UTA ChIP-Seq CTCF K562 20090226 | displayed | | 245 | UTA ChIP-Seq c-Myc K562 20090226 | displayed | | 258 | Duke DNase-Seq GM12878 20090227 | displayed | | 272 | Duke DNase-Seq HepG2 20090310 | displayed | | 274 | UTA Input HepG2 20090312 | displayed | | 275 | UTA Input HelaS3 20090313 | displayed | | 278 | UTA ChIP Peaks Only | displayed | | 280 | Duke DNase HelaS3 20090320 | displayed | | 281 | UTA ChIP-Seq CTCF HelaS3 20090320 | displayed | | 282 | UTA ChIP-Seq c-Myc HelaS3 20090320 | displayed | | 283 | UTA ChIP-Seq CTCF HepG2 20090320 | displayed | | 284 | UTA ChIP-Seq c-Myc HepG2 20090320 | displayed | | 285 | UNC FAIRE-Seq HelaS3 20090321 | displayed | | 286 | UNC FAIRE-Seq HepG2 20090323 | displayed | | 287 | UNC FAIRE-Seq Peaks Only 20090420 | displayed | +-----+------------------------------------+------------+ 36 rows in set (0.00 sec) Attempts at regeneration when Hive was out ========================================== 245 K562/c-Myc errors Creating wiggle table definition in hg18.wgEncodeUtaChIPseqRawSignalRep1K562Cmyc Saving /data/tmp/loadWig_hgwdev_409b_87ede0.tab WARNING: Exceeded chr21 size 46944337 > 46944323. dropping 15 data point(s) WARNING: Exceeded chr7 size 158821448 > 158821424. dropping 25 data point(s) 244 K562/Ctcf Creating wiggle table definition in hg18.wgEncodeUtaChIPseqRawSignalRep3K562Ctcf Saving /data/tmp/loadWig_hgwdev_4d01_89a820.tab WARNING: Exceeded chr15 size 100338935 > 100338915. dropping 21 data point(s) WARNING: Exceeded chr20 size 62435981 > 62435964. dropping 18 data point(s) 34 GM12878/Input Creating wiggle table definition in hg18.wgEncodeUtaustinChIPseqRawSignalGm12878Input Saving /data/tmp/loadWig_hgwdev_5073_45d160.tab WARNING: Exceeded chr10 size 135374747 > 135374737. dropping 11 data point(s) WARNING: Exceeded chr20 size 62435980 > 62435964. dropping 17 data point(s) Creating wiggle table definition in hg18.wgEncodeUtaustinChIPseqSignalGm12878Input Saving /data/tmp/loadWig_hgwdev_654a_466590.tab WARNING: Exceeded chr10 size 135374747 > 135374737. dropping 11 data point(s) WARNING: Exceeded chr20 size 62435980 > 62435964. dropping 17 data point(s) 109 K562/Input Creating wiggle table definition in hg18.wgEncodeUtaustinChIPseqRawSignalK562Input Saving /data/tmp/loadWig_hgwdev_7cac_8ca280.tab WARNING: Exceeded chr10 size 135374738 > 135374737. dropping 2 data point(s) Creating wiggle table definition in hg18.wgEncodeUtaustinChIPseqSignalK562Input Saving /data/tmp/loadWig_hgwdev_6c0a_8bfa70.tab WARNING: Exceeded chr10 size 135374738 > 135374737. dropping 2 data point(s) 113 K562/Input Creating wiggle table definition in hg18.wgEncodeUncFAIREseqRawSignalRep2K562 Saving /data/tmp/loadWig_hgwdev_1fda_b8e650.tab WARNING: Exceeded chr20 size 62435984 > 62435964. dropping 21 data point(s) Creating wiggle table definition in hg18.wgEncodeUncFAIREseqRawSignalRep3K562 Saving /data/tmp/loadWig_hgwdev_cc0_b71960.tab WARNING: Exceeded chr21 size 46944335 > 46944323. dropping 13 data point(s) WARNING: Exceeded chr7 size 158821447 > 158821424. dropping 24 data point(s) Duke ExtraTracks 20081201 104 Duke DNase-Seq HepG2 20090310 272 Duke DNase-Seq GM12878 20090227 258(pk,sig,BO) 233*(Pk,Sig) 131(fastq) 114*(BO) 79*(BO) 31(taf,RawSig) Duke DNase-Seq K562 20090225 235(pk,sig) 127(fastq) 116(BO) 112(taf,RawSig) UTA Input GM12878 20081031 34 UTA Input K562 20081204 109 UTA Input HepG2 20090312 274 UTA Input HelaS3 20090313 275 UTA ChIP-Seq CTCF K562 20090226 244 UTA ChIP-Seq c-Myc K562 20090226 245 UTA ChIP-Seq CTCF GM12878 20090224 228(pk,sig,BO,RawSig,taf,fastq) 33* UNC FAIRE-Seq GM12878 20090224 231(pk,sig,BO,RawSig,taf,fastq) 115*(BO) 80*(BO) 32*(pk,sig,RawSig,taf,fastq) UNC FAIRE-Seq K562 20090225 234(pk,sig) 117(BO) 113(pk,sig,BO,RawSig,taf,fastq) Duke Round 1 ============ /cluster/data/encode/pipeline/bin/doEncodeValidate.pl -quick -skipAutoCreation -allowReloads x /cluster/data/encode/pipeline/encpipeline_prod/31 > validate_error 2>&1 /cluster/data/encode/pipeline/bin/doEncodeValidate.pl -quick -skipAutoCreation -allowReloads x /cluster/data/encode/pipeline/encpipeline_prod/32 > validate_error 2>&1 /cluster/data/encode/pipeline/bin/doEncodeValidate.pl -quick -skipAutoCreation -allowReloads x /cluster/data/encode/pipeline/encpipeline_prod/33 > validate_error 2>&1 /cluster/data/encode/pipeline/bin/doEncodeValidate.pl -quick -skipAutoCreation -allowReloads x /cluster/data/encode/pipeline/encpipeline_prod/34 > validate_error 2>&1 /cluster/data/encode/pipeline/bin/doEncodeValidate.pl x /cluster/data/encode/pipeline/encpipeline_prod/31 > validate_error 2>&1 & /cluster/data/encode/pipeline/bin/doEncodeValidate.pl x /cluster/data/encode/pipeline/encpipeline_prod/32 > validate_error 2>&1 & /cluster/data/encode/pipeline/bin/doEncodeValidate.pl x /cluster/data/encode/pipeline/encpipeline_prod/33 > validate_error 2>&1 & /cluster/data/encode/pipeline/bin/doEncodeValidate.pl x /cluster/data/encode/pipeline/encpipeline_prod/34 > validate_error 2>&1 & /cluster/data/encode/pipeline/bin/doEncodeLoad.pl x /cluster/data/encode/pipeline/encpipeline_prod/31 > upload_error 2>&1 & /cluster/data/encode/pipeline/bin/doEncodeLoad.pl x /cluster/data/encode/pipeline/encpipeline_prod/32 > upload_error 2>&1 & /cluster/data/encode/pipeline/bin/doEncodeLoad.pl x /cluster/data/encode/pipeline/encpipeline_prod/33 > upload_error 2>&1 & /cluster/data/encode/pipeline/bin/doEncodeLoad.pl x /cluster/data/encode/pipeline/encpipeline_prod/34 > upload_error 2>&1 & /cluster/data/encode/pipeline/bin/doEncodeLoad.pl -verbose 2 x /cluster/data/encode/pipeline/encpipeline_prod/31 > upload_error 2>&1 & mysql> select avg(pValue),stddev(pValue),avg(pValue) + stddev(pValue),max(pValue),min(pValue), round(450*(min(pValue) - avg(pValue))/stddev(pValue))+550 minScore, round(450* stddev(pValue) /stddev(pValue))+550 maxScore, round(450*(avg(pValue) - avg(pValue))/stddev(pValue))+550 midScore from wgEncodeDukeDNaseSeqPeaksGm12878; | avg(pValue) | stddev(pValue) | avg(pValue) + stddev(pValue) | max(pValue) | min(pValue) | minScore | maxScore | midScore | | 3.5181506516691 | 3.5025172998741 | 7.0206679515431 | 16 | 1.1799999475479 | 250 | 1000 | 550 | update wgEncodeDukeDNaseSeqPeaksGm12878 set score = 550 + round(450 *(pValue-avg(pValue))/stddev(pValue)); update wgEncodeDukeDNaseSeqPeaksGm12878 set score = 550 + round(450 *(pValue-3.51815)/3.50252); update wgEncodeDukeDNaseSeqPeaksGm12878 set score = 1000 where score > 1000; This gives a spread of scores between 100-1000 which centers on 550 and any pValue 1 or more sd above the mean is scored at 1000. mysql> select min(score),avg(score),max(score) from wgEncodeDukeDNaseSeqPeaksGm12878; | min(score) | avg(score) | max(score) | | 250 | 476.9985 | 1000 | select min( update p set score = 1000 where pValue >= 5; update p set score = 300 + (700 * pValue/5) where pValue < 5; CREATE TABLE encode_releases ( projectId int(11), trackName varchar(255) not null, downloadsDir varchar(255), type varchar(20), memtaData varchar(255), INDEX trackName, (projectId,trackName)) Duke 11-21 ========== cd 80;mv ../../ftp/prod/tsfurey//uncFAIREseqGM12878.20081121.tar.gz . tar -xzf /uncFAIREseqGM12878.20081121.tar.gz & /cluster/data/encode/pipeline/bin/doEncodeValidate.pl -quick -skipAutoCreation -allowReloads x /cluster/data/encode/pipeline/encpipeline_prod/80 > validate_error 2>&1 /cluster/data/encode/pipeline/bin/doEncodeValidate.pl x /cluster/data/encode/pipeline/encpipeline_prod/80 > validate_error 2>&1 & /cluster/data/encode/pipeline/bin/doEncodeLoad.pl x /cluster/data/encode/pipeline/encpipeline_prod/80 > upload_error 2>&1 & cd 79;mv ../../ftp/prod/tsfurey//uncFAIREseqGM12878.20081121.tar.gz . tar -xzf /uncFAIREseqGM12878.20081121.tar.gz & /cluster/data/encode/pipeline/bin/doEncodeValidate.pl -quick -skipAutoCreation -allowReloads x /cluster/data/encode/pipeline/encpipeline_prod/79 > validate_error 2>&1 /cluster/data/encode/pipeline/bin/doEncodeValidate.pl -allowReloads x /cluster/data/encode/pipeline/encpipeline_prod/79 > validate_error 2>&1 & /cluster/data/encode/pipeline/bin/doEncodeLoad.pl x /cluster/data/encode/pipeline/encpipeline_prod/79 > upload_error 2>&1 & | 31 | Duke DNase-Seq GM12878 20081031 | displayed | | 79 | Duke DNase-Seq GM12878 20081121 | displayed | | 32 | UNC FAIRE-Seq GM12878 20081031 | displayed | | 80 | UNC FAIRE-Seq GM12878 20081121 | displayed | | 33 | UTA ChIP-Seq CTCF GM12878 20081031 | displayed | | 34 | UTA Input GM12878 20081031 | displayed | cd 31 /bin/gzip -c UCSC_submission/GM12878_DukeDNaseSeq.pk > /usr/local/apache/htdocs/goldenPath/hg18/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqPeaksGm12878.narrowPeak.gz & cd 32 /bin/gzip -c UCSC_submission/GM12878_UncFAIREseq.pk > /usr/local/apache/htdocs/goldenPath/hg18/wgEncodeChromatinMap/wgEncodeUncFAIREseqPeaksGm12878.narrowPeak.gz & cd 33 /bin/gzip -c UCSC_submission/GM12878_UtaChIPseq_CTCF.pk > /usr/local/apache/htdocs/goldenPath/hg18/wgEncodeChromatinMap/wgEncodeUtaChIPseqPeaksGm12878Ctcf.narrowPeak.gz & Duke Extra Tracks ================= awk '{printf "%s\t%s\t%s\t%s\t1000\t.\n",$1,$2,$3,$4;}' old/DukeDNaseSeq_RegionsExcluded.bed > DukeDNaseSeq_RegionsExcluded.bed edit DukeExtraTracks.DAF /cluster/data/encode/pipeline/bin/doEncodeValidate.pl -quick -skipAutoCreation -allowReloads x /cluster/data/encode/pipeline/encpipeline_prod/104 > validate_error 2>&1 /cluster/data/encode/pipeline/bin/doEncodeValidate.pl -allowReloads x /cluster/data/encode/pipeline/encpipeline_prod/104 > validate_error 2>&1 & /cluster/data/encode/pipeline/bin/doEncodeLoad.pl x /cluster/data/encode/pipeline/encpipeline_prod/104 > upload_error 2>&1 & /cluster/home/tdreszer/bin/scripts/doEncodeLoad.pl x -skipLoad /cluster/data/encode/pipeline/encpipeline_prod/104 > upload_error 2>&1 & Duke BO reentry =============== /cluster/data/encode/pipeline/bin/doEncodeValidate.pl -quick -skipAutoCreation -allowReloads x /cluster/data/encode/pipeline/encpipeline_prod/114 > validate_error 2>&1 /cluster/data/encode/pipeline/bin/doEncodeValidate.pl -allowReloads x /cluster/data/encode/pipeline/encpipeline_prod/114 > validate_error 2>&1 & /cluster/data/encode/pipeline/bin/doEncodeLoad.pl x /cluster/data/encode/pipeline/encpipeline_prod/114 > upload_error 2>&1 & /cluster/data/encode/pipeline/bin/doEncodeValidate.pl -quick -skipAutoCreation -allowReloads x /cluster/data/encode/pipeline/encpipeline_prod/115 > validate_error 2>&1 /cluster/data/encode/pipeline/bin/doEncodeValidate.pl -allowReloads x /cluster/data/encode/pipeline/encpipeline_prod/115 > validate_error 2>&1 & /cluster/data/encode/pipeline/bin/doEncodeLoad.pl x /cluster/data/encode/pipeline/encpipeline_prod/115 > upload_error 2>&1 & /cluster/data/encode/pipeline/bin/doEncodeValidate.pl -quick -skipAutoCreation -allowReloads x /cluster/data/encode/pipeline/encpipeline_prod/116 > validate_error 2>&1 /cluster/data/encode/pipeline/bin/doEncodeValidate.pl -allowReloads x /cluster/data/encode/pipeline/encpipeline_prod/116 > validate_error 2>&1 & /cluster/data/encode/pipeline/bin/doEncodeLoad.pl x /cluster/data/encode/pipeline/encpipeline_prod/116 > upload_error 2>&1 & /cluster/data/encode/pipeline/bin/doEncodeValidate.pl -quick -skipAutoCreation -allowReloads x /cluster/data/encode/pipeline/encpipeline_prod/117 > validate_error 2>&1 /cluster/data/encode/pipeline/bin/doEncodeValidate.pl -allowReloads x /cluster/data/encode/pipeline/encpipeline_prod/117 > validate_error 2>&1 & /cluster/data/encode/pipeline/bin/doEncodeLoad.pl x /cluster/data/encode/pipeline/encpipeline_prod/117 > upload_error 2>&1 & Prepare for Duke ================ rename table wgEncodeDukeDNaseSeqBaseOverlapSignalGm12878 to save_wgEncodeDukeDNaseSeqBaseOverlapSignalGm12878; rename table wgEncodeDukeDNaseSeqPeaksGm12878 to save_wgEncodeDukeDNaseSeqPeaksGm12878; rename table wgEncodeDukeDNaseSeqRawSignalRep1Gm12878 to save_wgEncodeDukeDNaseSeqRawSignalRep1Gm12878; rename table wgEncodeDukeDNaseSeqRawSignalRep2Gm12878 to save_wgEncodeDukeDNaseSeqRawSignalRep2Gm12878; rename table wgEncodeDukeDNaseSeqRawSignalRep3Gm12878 to save_wgEncodeDukeDNaseSeqRawSignalRep3Gm12878; rename table wgEncodeDukeDNaseSeqRegionsExcludedGm12878 to save_wgEncodeDukeDNaseSeqRegionsExcludedGm12878; rename table wgEncodeDukeDNaseSeqSignalGm12878 to save_wgEncodeDukeDNaseSeqSignalGm12878; rename table wgEncodeDukeDnasePeaksGM12878 to save_wgEncodeDukeDnasePeaksGM12878; rename table wgEncodeDukeDnaseSignalGM12878 to save_wgEncodeDukeDnaseSignalGM12878; rename table wgEncodeDukeDNaseSeqBaseOverlapSignalK562 to save_wgEncodeDukeDNaseSeqBaseOverlapSignalK562; rename table wgEncodeUncFAIREseqBaseOverlapSignalGm12878 to save_wgEncodeUncFAIREseqBaseOverlapSignalGm12878; rename table wgEncodeUncFAIREseqPeaksGm12878 to save_wgEncodeUncFAIREseqPeaksGm12878; rename table wgEncodeUncFAIREseqRawSignalRep1Gm12878 to save_wgEncodeUncFAIREseqRawSignalRep1Gm12878; rename table wgEncodeUncFAIREseqRawSignalRep2Gm12878 to save_wgEncodeUncFAIREseqRawSignalRep2Gm12878; rename table wgEncodeUncFAIREseqRawSignalRep3Gm12878 to save_wgEncodeUncFAIREseqRawSignalRep3Gm12878; rename table wgEncodeUncFAIREseqSignalGm12878 to save_wgEncodeUncFAIREseqSignalGm12878; rename table wgEncodeDukeDNaseSeqPeaksK562 to save_wgEncodeDukeDNaseSeqPeaksK562; rename table wgEncodeDukeDNaseSeqRawSignalRep1K562 to save_wgEncodeDukeDNaseSeqRawSignalRep1K562; rename table wgEncodeDukeDNaseSeqRawSignalRep2K562 to save_wgEncodeDukeDNaseSeqRawSignalRep2K562; rename table wgEncodeDukeDNaseSeqRawSignalRep3K562 to save_wgEncodeDukeDNaseSeqRawSignalRep3K562; rename table wgEncodeDukeDNaseSeqSignalK562 to save_wgEncodeDukeDNaseSeqSignalK562; rename table wgEncodeUncFAIREseqBaseOverlapSignalK562 to save_wgEncodeUncFAIREseqBaseOverlapSignalK562; rename table wgEncodeUncFAIREseqPeaksK562 to save_wgEncodeUncFAIREseqPeaksK562; rename table wgEncodeUncFAIREseqRawSignalRep1K562 to save_wgEncodeUncFAIREseqRawSignalRep1K562; rename table wgEncodeUncFAIREseqRawSignalRep2K562 to save_wgEncodeUncFAIREseqRawSignalRep2K562; rename table wgEncodeUncFAIREseqRawSignalRep3K562 to save_wgEncodeUncFAIREseqRawSignalRep3K562; rename table wgEncodeUncFAIREseqSignalK562 to save_wgEncodeUncFAIREseqSignalK562; rename table wgEncodeUtaChIPseqPeaksGm12878Ctcf to save_wgEncodeUtaChIPseqPeaksGm12878Ctcf; rename table wgEncodeUtaChIPseqRawSignalRep1Gm12878Ctcf to save_wgEncodeUtaChIPseqRawSignalRep1Gm12878Ctcf; rename table wgEncodeUtaChIPseqRawSignalRep2Gm12878Ctcf to save_wgEncodeUtaChIPseqRawSignalRep2Gm12878Ctcf; rename table wgEncodeUtaChIPseqRawSignalRep3Gm12878Ctcf to save_wgEncodeUtaChIPseqRawSignalRep3Gm12878Ctcf; rename table wgEncodeUtaChIPseqSignalGm12878Ctcf to save_wgEncodeUtaChIPseqSignalGm12878Ctcf; show tables like "save_%"; +---------------------------------------------------+ | Tables_in_hg18 (save_%) | +---------------------------------------------------+ | save_wgEncodeDukeDNaseSeqBaseOverlapSignalGm12878 | | save_wgEncodeDukeDNaseSeqBaseOverlapSignalK562 | | save_wgEncodeDukeDNaseSeqPeaksGm12878 | | save_wgEncodeDukeDNaseSeqPeaksK562 | | save_wgEncodeDukeDNaseSeqRawSignalRep1Gm12878 | | save_wgEncodeDukeDNaseSeqRawSignalRep1K562 | | save_wgEncodeDukeDNaseSeqRawSignalRep2Gm12878 | | save_wgEncodeDukeDNaseSeqRawSignalRep2K562 | | save_wgEncodeDukeDNaseSeqRawSignalRep3Gm12878 | | save_wgEncodeDukeDNaseSeqRawSignalRep3K562 | | save_wgEncodeDukeDNaseSeqRegionsExcludedGm12878 | | save_wgEncodeDukeDNaseSeqSignalGm12878 | | save_wgEncodeDukeDNaseSeqSignalK562 | | save_wgEncodeDukeDnasePeaksGM12878 | | save_wgEncodeDukeDnaseSignalGM12878 | | save_wgEncodeUncFAIREseqBaseOverlapSignalGm12878 | | save_wgEncodeUncFAIREseqBaseOverlapSignalK562 | | save_wgEncodeUncFAIREseqPeaksGm12878 | | save_wgEncodeUncFAIREseqPeaksK562 | | save_wgEncodeUncFAIREseqRawSignalRep1Gm12878 | | save_wgEncodeUncFAIREseqRawSignalRep1K562 | | save_wgEncodeUncFAIREseqRawSignalRep2Gm12878 | | save_wgEncodeUncFAIREseqRawSignalRep2K562 | | save_wgEncodeUncFAIREseqRawSignalRep3Gm12878 | | save_wgEncodeUncFAIREseqRawSignalRep3K562 | | save_wgEncodeUncFAIREseqSignalGm12878 | | save_wgEncodeUncFAIREseqSignalK562 | | save_wgEncodeUtaChIPseqPeaksGm12878Ctcf | | save_wgEncodeUtaChIPseqRawSignalRep1Gm12878Ctcf | | save_wgEncodeUtaChIPseqRawSignalRep2Gm12878Ctcf | | save_wgEncodeUtaChIPseqRawSignalRep3Gm12878Ctcf | | save_wgEncodeUtaChIPseqSignalGm12878Ctcf | +---------------------------------------------------+ Duke ==== /cluster/data/encode/pipeline/bin/doEncodeValidate.pl -allowReloads x /hive/groups/encode/dcc/pipeline/encpipeline_prod/231 > validate_error 2>&1 & /cluster/data/encode/pipeline/bin/doEncodeLoad.pl x /hive/groups/encode/dcc/pipeline/encpipeline_prod/231 > load_error 2>&1 & /cluster/data/encode/pipeline/bin/doEncodeValidate.pl -allowReloads x /hive/groups/encode/dcc/pipeline/encpipeline_prod/233 > validate_error 2>&1 & /cluster/data/encode/pipeline/bin/doEncodeLoad.pl x /hive/groups/encode/dcc/pipeline/encpipeline_prod/233 > load_error 2>&1 & Now revert: show tables like "%wgEncodeDukeDNaseSeqPeaksGm12878"; drop table save_wgEncodeDukeDNaseSeqPeaksGm12878; drop table deleted_wgEncodeDukeDNaseSeqPeaksGm12878; show tables like "%wgEncodeDukeDNaseSeqSignalGm12878"; drop table save_wgEncodeDukeDNaseSeqSignalGm12878; rename table save_wgEncodeDukeDNaseSeqBaseOverlapSignalGm12878 to wgEncodeDukeDNaseSeqBaseOverlapSignalGm12878; rename table save_wgEncodeDukeDNaseSeqRawSignalRep1Gm12878 to wgEncodeDukeDNaseSeqRawSignalRep1Gm12878; rename table save_wgEncodeDukeDNaseSeqRawSignalRep2Gm12878 to wgEncodeDukeDNaseSeqRawSignalRep2Gm12878; rename table save_wgEncodeDukeDNaseSeqRawSignalRep3Gm12878 to wgEncodeDukeDNaseSeqRawSignalRep3Gm12878; show tables like "%wgEncodeUncFAIREseqBaseOverlapSignalGm12878"; drop table save_wgEncodeUncFAIREseqBaseOverlapSignalGm12878; show tables like "%wgEncodeUncFAIREseqPeaksGm12878"; drop table save_wgEncodeUncFAIREseqPeaksGm12878; show tables like "%wgEncodeUncFAIREseqRawSignalRep1Gm12878"; drop table save_wgEncodeUncFAIREseqRawSignalRep1Gm12878; show tables like "%wgEncodeUncFAIREseqRawSignalRep2Gm12878"; drop table save_wgEncodeUncFAIREseqRawSignalRep2Gm12878; show tables like "%wgEncodeUncFAIREseqRawSignalRep3Gm12878"; drop table save_wgEncodeUncFAIREseqRawSignalRep3Gm12878; show tables like "%wgEncodeUncFAIREseqSignalGm12878"; drop table save_wgEncodeUncFAIREseqSignalGm12878; show tables like "%wgEncodeUncFAIREseqPeaksK562"; drop table save_wgEncodeUncFAIREseqPeaksK562; show tables like "%wgEncodeUncFAIREseqSignalK562"; drop table save_wgEncodeUncFAIREseqSignalK562; show tables like "%wgEncodeUncFAIREseqBaseOverlapSignalK562"; rename table save_wgEncodeUncFAIREseqBaseOverlapSignalK562 to wgEncodeUncFAIREseqBaseOverlapSignalK562; show tables like "%wgEncodeUncFAIREseqRawSignalRep1K562"; rename table save_wgEncodeUncFAIREseqRawSignalRep1K562 to wgEncodeUncFAIREseqRawSignalRep1K562; show tables like "%wgEncodeUncFAIREseqRawSignalRep2K562"; rename table save_wgEncodeUncFAIREseqRawSignalRep2K562 to wgEncodeUncFAIREseqRawSignalRep2K562; show tables like "%wgEncodeUncFAIREseqRawSignalRep3K562"; rename table save_wgEncodeUncFAIREseqRawSignalRep3K562 to wgEncodeUncFAIREseqRawSignalRep3K562; show tables like "%wgEncodeDukeDNaseSeqPeaksK562"; drop table save_wgEncodeDukeDNaseSeqPeaksK562; show tables like "%wgEncodeDukeDNaseSeqSignalK562"; drop table save_wgEncodeDukeDNaseSeqSignalK562; show tables like "%wgEncodeDukeDNaseSeqBaseOverlapSignalK562"; rename table save_wgEncodeDukeDNaseSeqBaseOverlapSignalK562 to wgEncodeDukeDNaseSeqBaseOverlapSignalK562; show tables like "%wgEncodeDukeDNaseSeqRawSignalRep1K562"; rename table save_wgEncodeDukeDNaseSeqRawSignalRep1K562 to wgEncodeDukeDNaseSeqRawSignalRep1K562; show tables like "%wgEncodeDukeDNaseSeqRawSignalRep2K562"; rename table save_wgEncodeDukeDNaseSeqRawSignalRep2K562 to wgEncodeDukeDNaseSeqRawSignalRep2K562; show tables like "%wgEncodeDukeDNaseSeqRawSignalRep3K562"; rename table save_wgEncodeDukeDNaseSeqRawSignalRep3K562 to wgEncodeDukeDNaseSeqRawSignalRep3K562; show tables like "%wgEncodeDukeDNaseSeqRegionsExcludedGm12878"; rename table save_wgEncodeDukeDNaseSeqRegionsExcludedGm12878 to wgEncodeDukeDNaseSeqRegionsExcludedGm12878; show tables like "%wgEncodeUtaChIPseqPeaksGm12878Ctcf"; drop table save_wgEncodeUtaChIPseqPeaksGm12878Ctcf; show tables like "%wgEncodeUtaChIPseqSignalGm12878Ctcf"; drop table save_wgEncodeUtaChIPseqSignalGm12878Ctcf; show tables like "%wgEncodeUtaChIPseqRawSignalRep1Gm12878Ctcf"; drop table save_wgEncodeUtaChIPseqRawSignalRep1Gm12878Ctcf; show tables like "%wgEncodeUtaChIPseqRawSignalRep2Gm12878Ctcf"; drop table save_wgEncodeUtaChIPseqRawSignalRep2Gm12878Ctcf; show tables like "%wgEncodeUtaChIPseqRawSignalRep3Gm12878Ctcf"; drop table save_wgEncodeUtaChIPseqRawSignalRep3Gm12878Ctcf; show tables like "%wgEncodeDukeDnasePeaksGM12878"; drop table save_wgEncodeDukeDnasePeaksGM12878; show tables like "%wgEncodeDukeDnaseSignalGM12878"; drop table save_wgEncodeDukeDnaseSignalGM12878; show tables like "save_%"; Empty set (0.09 sec) Duke/UTA new submissions 2009-02-27 =================================== /cluster/data/encode/pipeline/bin/doEncodeValidate.pl -quick -skipAutoCreation x /hive/groups/encode/dcc/pipeline/encpipeline_prod/245 > validate_error 2>&1 /cluster/data/encode/pipeline/bin/doEncodeValidate.pl x /hive/groups/encode/dcc/pipeline/encpipeline_prod/245 > validate_error 2>&1 & /cluster/data/encode/pipeline/bin/doEncodeLoad.pl x /hive/groups/encode/dcc/pipeline/encpipeline_prod/245 > load_error 2>&1 & /cluster/data/encode/pipeline/bin/encodeStatus.pl 245 loaded /cluster/data/encode/pipeline/bin/doEncodeValidate.pl -allowReloads -quick -skipAutoCreation x /hive/groups/encode/dcc/pipeline/encpipeline_prod/258 validate_error 2>&1 /cluster/data/encode/pipeline/bin/doEncodeValidate.pl -allowReloads x /hive/groups/encode/dcc/pipeline/encpipeline_prod/258 validate_error 2>&1 & /cluster/data/encode/pipeline/bin/doEncodeLoad.pl x /hive/groups/encode/dcc/pipeline/encpipeline_prod/258 > load_error 2>&1 & /cluster/data/encode/pipeline/bin/encodeStatus.pl 258 loaded Duke ==== /cluster/data/encode/pipeline/bin/encodeStatus.pl 272 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 274 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 275 displayed Duke Resubmits corrected Peaks 2009-03-20 ========================================= | wgEncodeDukeDNaseSeqNewPeaksGm12878 | | wgEncodeDukeDNaseSeqNewPeaksHepg2 | | wgEncodeDukeDNaseSeqNewPeaksK562 | select count(*) from wgEncodeDukeDNaseSeqNewPeaksGm12878;| 97097 | select count(*) from wgEncodeDukeDNaseSeqNewPeaksHepg2; | 118945 | select count(*) from wgEncodeDukeDNaseSeqNewPeaksK562; | 106767 | select count(*) from wgEncodeDukeDNaseSeqPeaksGm12878; | 97097 | select count(*) from wgEncodeDukeDNaseSeqPeaksHepg2; | 118945 | select count(*) from wgEncodeDukeDNaseSeqPeaksK562; | 106767 | SELECT DISTINCT t1.name FROM wgEncodeDukeDNaseSeqNewPeaksGm12878 t1, wgEncodeDukeDNaseSeqPeaksGm12878 t2 WHERE t1.name=t2.name and t1.chromEnd = (t2.chromEnd + 1) limit 2; rename table wgEncodeDukeDNaseSeqPeaksGm12878 to wgEncodeOldDukeDNaseSeqPeaksGm12878; rename table wgEncodeDukeDNaseSeqPeaksHepg2 to wgEncodeOldDukeDNaseSeqPeaksHepg2; rename table wgEncodeDukeDNaseSeqPeaksK562 to wgEncodeOldDukeDNaseSeqPeaksK562; rename table wgEncodeDukeDNaseSeqNewPeaksGm12878 to wgEncodeDukeDNaseSeqPeaksGm12878; rename table wgEncodeDukeDNaseSeqNewPeaksHepg2 to wgEncodeDukeDNaseSeqPeaksHepg2; rename table wgEncodeDukeDNaseSeqNewPeaksK562 to wgEncodeDukeDNaseSeqPeaksK562; select count(*) from wgEncodeUtaChIPseqNewPeaksGm12878Ctcf; | 69505 | select count(*) from wgEncodeUtaChIPseqNewPeaksK562Cmyc; | 52589 | select count(*) from wgEncodeUtaChIPseqNewPeaksK562Ctcf; | 65337 | select count(*) from wgEncodeUtaChIPseqPeaksGm12878Ctcf; | 69505 | select count(*) from wgEncodeUtaChIPseqPeaksK562Cmyc; | 52589 | select count(*) from wgEncodeUtaChIPseqPeaksK562Ctcf; | 65337 | SELECT DISTINCT t1.name FROM wgEncodeUtaChIPseqNewPeaksGm12878Ctcf t1, wgEncodeUtaChIPseqPeaksGm12878Ctcf t2 WHERE t1.name=t2.name and t1.chromEnd = (t2.chromEnd + 1) limit 2; rename table wgEncodeUtaChIPseqPeaksGm12878Ctcf to wgEncodeOldUtaChIPseqPeaksGm12878Ctcf; rename table wgEncodeUtaChIPseqPeaksK562Cmyc to wgEncodeOldUtaChIPseqPeaksK562Cmyc; rename table wgEncodeUtaChIPseqPeaksK562Ctcf to wgEncodeOldUtaChIPseqPeaksK562Ctcf; rename table wgEncodeUtaChIPseqNewPeaksGm12878Ctcf to wgEncodeUtaChIPseqPeaksGm12878Ctcf; rename table wgEncodeUtaChIPseqNewPeaksK562Cmyc to wgEncodeUtaChIPseqPeaksK562Cmyc; rename table wgEncodeUtaChIPseqNewPeaksK562Ctcf to wgEncodeUtaChIPseqPeaksK562Ctcf; mv wgEncodeDukeDNaseSeqPeaksGm12878.narrowPeak.gz wgEncodeDukeDNaseSeqPeaksGm12878.narrowPeak.gz.old mv wgEncodeDukeDNaseSeqPeaksK562.narrowPeak.gz wgEncodeDukeDNaseSeqPeaksK562.narrowPeak.gz.old mv wgEncodeDukeDNaseSeqPeaksHepg2.narrowPeak.gz wgEncodeDukeDNaseSeqPeaksHepg2.narrowPeak.gz.old mv wgEncodeUtaChIPseqPeaksGm12878Ctcf.narrowPeak.gz wgEncodeUtaChIPseqPeaksGm12878Ctcf.narrowPeak.gz.old mv wgEncodeUtaChIPseqPeaksK562Ctcf.narrowPeak.gz wgEncodeUtaChIPseqPeaksK562Ctcf.narrowPeak.gz.old mv wgEncodeUtaChIPseqPeaksK562Cmyc.narrowPeak.gz wgEncodeUtaChIPseqPeaksK562Cmyc.narrowPeak.gz.old mv wgEncodeDukeDNaseSeqNewPeaksGm12878.narrowPeak.gz wgEncodeDukeDNaseSeqPeaksGm12878.narrowPeak.gz mv wgEncodeDukeDNaseSeqNewPeaksK562.narrowPeak.gz wgEncodeDukeDNaseSeqPeaksK562.narrowPeak.gz mv wgEncodeDukeDNaseSeqNewPeaksHepg2.narrowPeak.gz wgEncodeDukeDNaseSeqPeaksHepg2.narrowPeak.gz mv wgEncodeUtaChIPseqNewPeaksGm12878Ctcf.narrowPeak.gz wgEncodeUtaChIPseqPeaksGm12878Ctcf.narrowPeak.gz mv wgEncodeUtaChIPseqNewPeaksK562Ctcf.narrowPeak.gz wgEncodeUtaChIPseqPeaksK562Ctcf.narrowPeak.gz mv wgEncodeUtaChIPseqNewPeaksK562Cmyc.narrowPeak.gz wgEncodeUtaChIPseqPeaksK562Cmyc.narrowPeak.gz /cluster/data/encode/pipeline/bin/encodeStatus.pl 277 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 278 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 280 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 281 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 282 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 283 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 284 displayed Duke fix 285 hive crashed while loading 2009-03-21 ================================================== /cluster/data/encode/pipeline/bin/doEncodeValidate.pl -quick -skipAutoCreation -allowReloads x /cluster/data/encode/pipeline/encpipeline_prod/285 > validate_error 2>&1 /cluster/data/encode/pipeline/bin/doEncodeValidate.pl x -allowReloads /cluster/data/encode/pipeline/encpipeline_prod/285 > validate_error 2>&1 & /cluster/data/encode/pipeline/bin/doEncodeLoad.pl x /cluster/data/encode/pipeline/encpipeline_prod/285 > load_error 2>&1 & Job died before Rep3,Peaks and fastq were loaded. New DDF and restart. /cluster/data/encode/pipeline/bin/doEncodeLoad.pl x /cluster/data/encode/pipeline/encpipeline_prod/285 >> load_error 2>&1 & hg18 went down... start over on full set /cluster/data/encode/pipeline/bin/doEncodeLoad.pl x /cluster/data/encode/pipeline/encpipeline_prod/285 > load_error 2>&1 & Legitimate errors peaks and still no RawSiganlRep3, so start over excluding peaks /cluster/data/encode/pipeline/bin/doEncodeLoad.pl x /cluster/data/encode/pipeline/encpipeline_prod/285 > load_error 2>&1 & Edit load.ra and again... /cluster/data/encode/pipeline/bin/encodeStatus.pl 285 loaded /cluster/data/encode/pipeline/bin/encodeStatus.pl 285 displayed More Duke/UNC/UTA 2009-04-20: ============================= rename table wgEncodeUncFAIREseqPeaksGm12878 to wgEncodeOldUncFAIREseqPeaksGm12878; rename table wgEncodeUncFAIREseqNewPeaksGm12878 to wgEncodeUncFAIREseqPeaksGm12878; rename table wgEncodeUncFAIREseqPeaksK562 to wgEncodeOldUncFAIREseqPeaksK562; rename table wgEncodeUncFAIREseqNewPeaksK562 to wgEncodeUncFAIREseqPeaksK562; /cluster/data/encode/pipeline/bin/encodeStatus.pl 287 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 286 displayed Generate Raw Signals by our methods 2009-05-07 ============================================== # Created 4 DAF/DDF pairs: rawSigDuke.D*F rawSigUnc.D*F rawSigUta.D*F rawSigInput.D*F # Contents of DDF has relative path to current tagAlign file (*.taf); and contents of DAF is only RawSignal and Alignments cd encpipeline_prod mkdir 2 (for test) cd 2; cp rawSigDuke.D*F . ~/bin/scripts/doEncodeValidate.pl -quick -skipAutoCreation -allowReloads x ../2 > validate_error 2>&1 # no errors ~/bin/scripts/doEncodeValidate.pl -quick -skipAutoCreation x ../2 > validate_error 2>&1 view 'RawSignal' has already been loaded as track 'wgEncodeDukeDNaseSeqRawSignalRep2Gm12878' show tables like "wgEncodeDuke%RawSignal%"; | wgEncodeDukeDNaseSeqRawSignalRep1Gm12878 | | wgEncodeDukeDNaseSeqRawSignalRep1Helas3 | | wgEncodeDukeDNaseSeqRawSignalRep1Hepg2 | | wgEncodeDukeDNaseSeqRawSignalRep1K562 | | wgEncodeDukeDNaseSeqRawSignalRep2Gm12878 | | wgEncodeDukeDNaseSeqRawSignalRep2Helas3 | | wgEncodeDukeDNaseSeqRawSignalRep2Hepg2 | | wgEncodeDukeDNaseSeqRawSignalRep2K562 | | wgEncodeDukeDNaseSeqRawSignalRep3Gm12878 | | wgEncodeDukeDNaseSeqRawSignalRep3Helas3 | | wgEncodeDukeDNaseSeqRawSignalRep3Hepg2 | | wgEncodeDukeDNaseSeqRawSignalRep3K562 | | wgEncodeUncFAIREseqRawSignalRep1Gm12878 | | wgEncodeUncFAIREseqRawSignalRep1Helas3 | | wgEncodeUncFAIREseqRawSignalRep1Hepg2 | | wgEncodeUncFAIREseqRawSignalRep1K562 | | wgEncodeUncFAIREseqRawSignalRep2Gm12878 | | wgEncodeUncFAIREseqRawSignalRep2Helas3 | | wgEncodeUncFAIREseqRawSignalRep2Hepg2 | | wgEncodeUncFAIREseqRawSignalRep2K562 | | wgEncodeUncFAIREseqRawSignalRep3Gm12878 | | wgEncodeUncFAIREseqRawSignalRep3Helas3 | | wgEncodeUncFAIREseqRawSignalRep3Hepg2 | | wgEncodeUncFAIREseqRawSignalRep3K562 | | wgEncodeUtaChIPseqRawSignalRep1Gm12878Ctcf | | wgEncodeUtaChIPseqRawSignalRep1Helas3Cmyc | | wgEncodeUtaChIPseqRawSignalRep1Helas3Ctcf | | wgEncodeUtaChIPseqRawSignalRep1Hepg2Cmyc | | wgEncodeUtaChIPseqRawSignalRep1Hepg2Ctcf | | wgEncodeUtaChIPseqRawSignalRep1K562Cmyc | | wgEncodeUtaChIPseqRawSignalRep1K562Ctcf | | wgEncodeUtaChIPseqRawSignalRep2Gm12878Ctcf | | wgEncodeUtaChIPseqRawSignalRep2Helas3Cmyc | | wgEncodeUtaChIPseqRawSignalRep2Helas3Ctcf | | wgEncodeUtaChIPseqRawSignalRep2Hepg2Cmyc | | wgEncodeUtaChIPseqRawSignalRep2Hepg2Ctcf | | wgEncodeUtaChIPseqRawSignalRep2K562Cmyc | | wgEncodeUtaChIPseqRawSignalRep2K562Ctcf | | wgEncodeUtaChIPseqRawSignalRep3Gm12878Ctcf | | wgEncodeUtaChIPseqRawSignalRep3Hepg2Cmyc | | wgEncodeUtaChIPseqRawSignalRep3K562Cmyc | | wgEncodeUtaChIPseqRawSignalRep3K562Ctcf | | wgEncodeUtaustinChIPseqRawSignalGm12878Input | | wgEncodeUtaustinChIPseqRawSignalHelas3Input | | wgEncodeUtaustinChIPseqRawSignalHepg2Input | | wgEncodeUtaustinChIPseqRawSignalK562Input | rename table wgEncodeDukeDNaseSeqRawSignalRep1Gm12878 to wgEncodeDukeDNaseSeqRawSignalRep1Gm12878_terry ; rename table wgEncodeDukeDNaseSeqRawSignalRep1Helas3 to wgEncodeDukeDNaseSeqRawSignalRep1Helas3_terry ; rename table wgEncodeDukeDNaseSeqRawSignalRep1Hepg2 to wgEncodeDukeDNaseSeqRawSignalRep1Hepg2_terry ; rename table wgEncodeDukeDNaseSeqRawSignalRep1K562 to wgEncodeDukeDNaseSeqRawSignalRep1K562_terry ; rename table wgEncodeDukeDNaseSeqRawSignalRep2Gm12878 to wgEncodeDukeDNaseSeqRawSignalRep2Gm12878_terry ; rename table wgEncodeDukeDNaseSeqRawSignalRep2Helas3 to wgEncodeDukeDNaseSeqRawSignalRep2Helas3_terry ; rename table wgEncodeDukeDNaseSeqRawSignalRep2Hepg2 to wgEncodeDukeDNaseSeqRawSignalRep2Hepg2_terry ; rename table wgEncodeDukeDNaseSeqRawSignalRep2K562 to wgEncodeDukeDNaseSeqRawSignalRep2K562_terry ; rename table wgEncodeDukeDNaseSeqRawSignalRep3Gm12878 to wgEncodeDukeDNaseSeqRawSignalRep3Gm12878_terry ; rename table wgEncodeDukeDNaseSeqRawSignalRep3Helas3 to wgEncodeDukeDNaseSeqRawSignalRep3Helas3_terry ; rename table wgEncodeDukeDNaseSeqRawSignalRep3Hepg2 to wgEncodeDukeDNaseSeqRawSignalRep3Hepg2_terry ; rename table wgEncodeDukeDNaseSeqRawSignalRep3K562 to wgEncodeDukeDNaseSeqRawSignalRep3K562_terry ; rename table wgEncodeUncFAIREseqRawSignalRep1Gm12878 to wgEncodeUncFAIREseqRawSignalRep1Gm12878_terry ; rename table wgEncodeUncFAIREseqRawSignalRep1Helas3 to wgEncodeUncFAIREseqRawSignalRep1Helas3_terry ; rename table wgEncodeUncFAIREseqRawSignalRep1Hepg2 to wgEncodeUncFAIREseqRawSignalRep1Hepg2_terry ; rename table wgEncodeUncFAIREseqRawSignalRep1K562 to wgEncodeUncFAIREseqRawSignalRep1K562_terry ; rename table wgEncodeUncFAIREseqRawSignalRep2Gm12878 to wgEncodeUncFAIREseqRawSignalRep2Gm12878_terry ; rename table wgEncodeUncFAIREseqRawSignalRep2Helas3 to wgEncodeUncFAIREseqRawSignalRep2Helas3_terry ; rename table wgEncodeUncFAIREseqRawSignalRep2Hepg2 to wgEncodeUncFAIREseqRawSignalRep2Hepg2_terry ; rename table wgEncodeUncFAIREseqRawSignalRep2K562 to wgEncodeUncFAIREseqRawSignalRep2K562_terry ; rename table wgEncodeUncFAIREseqRawSignalRep3Gm12878 to wgEncodeUncFAIREseqRawSignalRep3Gm12878_terry ; rename table wgEncodeUncFAIREseqRawSignalRep3Helas3 to wgEncodeUncFAIREseqRawSignalRep3Helas3_terry ; rename table wgEncodeUncFAIREseqRawSignalRep3Hepg2 to wgEncodeUncFAIREseqRawSignalRep3Hepg2_terry ; rename table wgEncodeUncFAIREseqRawSignalRep3K562 to wgEncodeUncFAIREseqRawSignalRep3K562_terry ; rename table wgEncodeUtaChIPseqRawSignalRep1Gm12878Ctcf to wgEncodeUtaChIPseqRawSignalRep1Gm12878Ctcf_terry ; rename table wgEncodeUtaChIPseqRawSignalRep1Helas3Cmyc to wgEncodeUtaChIPseqRawSignalRep1Helas3Cmyc_terry ; rename table wgEncodeUtaChIPseqRawSignalRep1Helas3Ctcf to wgEncodeUtaChIPseqRawSignalRep1Helas3Ctcf_terry ; rename table wgEncodeUtaChIPseqRawSignalRep1Hepg2Cmyc to wgEncodeUtaChIPseqRawSignalRep1Hepg2Cmyc_terry ; rename table wgEncodeUtaChIPseqRawSignalRep1Hepg2Ctcf to wgEncodeUtaChIPseqRawSignalRep1Hepg2Ctcf_terry ; rename table wgEncodeUtaChIPseqRawSignalRep1K562Cmyc to wgEncodeUtaChIPseqRawSignalRep1K562Cmyc_terry ; rename table wgEncodeUtaChIPseqRawSignalRep1K562Ctcf to wgEncodeUtaChIPseqRawSignalRep1K562Ctcf_terry ; rename table wgEncodeUtaChIPseqRawSignalRep2Gm12878Ctcf to wgEncodeUtaChIPseqRawSignalRep2Gm12878Ctcf_terry ; rename table wgEncodeUtaChIPseqRawSignalRep2Helas3Cmyc to wgEncodeUtaChIPseqRawSignalRep2Helas3Cmyc_terry ; rename table wgEncodeUtaChIPseqRawSignalRep2Helas3Ctcf to wgEncodeUtaChIPseqRawSignalRep2Helas3Ctcf_terry ; rename table wgEncodeUtaChIPseqRawSignalRep2Hepg2Cmyc to wgEncodeUtaChIPseqRawSignalRep2Hepg2Cmyc_terry ; rename table wgEncodeUtaChIPseqRawSignalRep2Hepg2Ctcf to wgEncodeUtaChIPseqRawSignalRep2Hepg2Ctcf_terry ; rename table wgEncodeUtaChIPseqRawSignalRep2K562Cmyc to wgEncodeUtaChIPseqRawSignalRep2K562Cmyc_terry ; rename table wgEncodeUtaChIPseqRawSignalRep2K562Ctcf to wgEncodeUtaChIPseqRawSignalRep2K562Ctcf_terry ; rename table wgEncodeUtaChIPseqRawSignalRep3Gm12878Ctcf to wgEncodeUtaChIPseqRawSignalRep3Gm12878Ctcf_terry ; rename table wgEncodeUtaChIPseqRawSignalRep3Hepg2Cmyc to wgEncodeUtaChIPseqRawSignalRep3Hepg2Cmyc_terry ; rename table wgEncodeUtaChIPseqRawSignalRep3K562Cmyc to wgEncodeUtaChIPseqRawSignalRep3K562Cmyc_terry ; rename table wgEncodeUtaChIPseqRawSignalRep3K562Ctcf to wgEncodeUtaChIPseqRawSignalRep3K562Ctcf_terry ; rename table wgEncodeUtaustinChIPseqRawSignalGm12878Input to wgEncodeUtaustinChIPseqRawSignalGm12878Input_terry; rename table wgEncodeUtaustinChIPseqRawSignalHelas3Input to wgEncodeUtaustinChIPseqRawSignalHelas3Input_terry ; rename table wgEncodeUtaustinChIPseqRawSignalHepg2Input to wgEncodeUtaustinChIPseqRawSignalHepg2Input_terry ; rename table wgEncodeUtaustinChIPseqRawSignalK562Input to wgEncodeUtaustinChIPseqRawSignalK562Input_terry ; #### Remember that wigs have file name element, so rename doesn't work. All will need to be deleted! ~/bin/scripts/doEncodeValidate.pl -quick -skipAutoCreation x ../2 > validate_error 2>&1 view 'RawSignal' has already been loaded as track 'wgEncodeDukeDNaseSeqRawSignalRep2Gm12878' # Problem is that the tables are in the tdb # so edit trackDb.wgEncode.ra commenting out RawSignals ~/bin/scripts/doEncodeValidate.pl -quick -skipAutoCreation x ../2 > validate_error 2>&1 # no errors # Had used local version testing changes to code. Checked in made install and now: /cluster/data/encode/pipeline/bin/doEncodeValidate.pl -quick x ../2 > validate_error 2>&1 & # remove test dir cd ..;rm -rf 2 # prepare archives and submit them tar -cpzf rawSigDuke.tgz rawSigDuke.D*F tar -cpzf rawSigUnc.tgz rawSigUnc.D*F tar -cpzf rawSigUta.tgz rawSigUta.D*F tar -cpzf rawSigInput.tgz rawSigInput.D*F # log on to submission pipeline website as tsfurey, create 4 new submission dirs, submitted the for tars | 325 | Duke DNase RawSignal Gen 20090507 | validating | | 326 | UNC FAIRE-Seq RawSignal Gen 20090507 | upload requested | | 327 | UTA ChIP-Seq RawSignal Gen 20090507 | upload requested | | 328 | UTA Input RawSignal Gen 20090507 | upload requested | Edit trackDb.wgEncode.ra replacing the old RawSignal tracks with the new ones. /cluster/data/encode/pipeline/bin/encodeStatus.pl 325 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 326 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 327 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 328 displayed Splitting Uniqueness tracks 2009-05-12 ====================================== wgEncodeDukeDNaseSeqUniqueness20bpGm12878 | | wgEncodeDukeDNaseSeqUniqueness24bpGm12878 | | wgEncodeDukeDNaseSeqUniqueness35bpGm12878 cd /gbdb/hg18/wib mv /gbdb/hg18/wib/wgEncodeDukeDNaseSeqUniqueness20bpGm12878.wib /gbdb/hg18/wib/wgEncodeDukeUniqueness20bp.wib mv /gbdb/hg18/wib/wgEncodeDukeDNaseSeqUniqueness24bpGm12878.wib /gbdb/hg18/wib/wgEncodeDukeUniqueness24bp.wib mv /gbdb/hg18/wib/wgEncodeDukeDNaseSeqUniqueness35bpGm12878.wib /gbdb/hg18/wib/wgEncodeDukeUniqueness35bp.wib update wgEncodeDukeDNaseSeqUniqueness20bpGm12878 set file = '/gbdb/hg18/wib/wgEncodeDukeUniqueness20bp.wib'; update wgEncodeDukeDNaseSeqUniqueness24bpGm12878 set file = '/gbdb/hg18/wib/wgEncodeDukeDUniqueness24bp.wib'; update wgEncodeDukeDNaseSeqUniqueness35bpGm12878 set file = '/gbdb/hg18/wib/wgEncodeDukeUniqueness35bp.wib'; rename table wgEncodeDukeDNaseSeqUniqueness20bpGm12878 to wgEncodeDukeUniqueness20bp; rename table wgEncodeDukeDNaseSeqUniqueness24bpGm12878 to wgEncodeDukeUniqueness24bp; rename table wgEncodeDukeDNaseSeqUniqueness35bpGm12878 to wgEncodeDukeUniqueness35bp; rename table wgEncodeDukeDNaseSeqRegionsExcludedGm12878 to wgEncodeDukeRegionsExcluded; # in donwloads dir mv wgEncodeDukeDNaseSeqRegionsExcludedGm12878.bed6.gz wgEncodeDukeDNaseSeqRegionsExcluded.bed6.gz mv wgEncodeDukeDNaseSeqUniqueness20bpGm12878.wig.gz wgEncodeDukeDNaseSeqUniqueness20bp.wig.gz mv wgEncodeDukeDNaseSeqUniqueness24bpGm12878.wig.gz wgEncodeDukeDNaseSeqUniqueness24bp.wig.gz mv wgEncodeDukeDNaseSeqUniqueness35bpGm12878.wig.gz wgEncodeDukeDNaseSeqUniqueness35bp.wig.gz mv wgEncodeDukeDNaseSeqRegionsExcluded.bed6.gz wgEncodeDukeRegionsExcluded.bed6.gz mv wgEncodeDukeDNaseSeqUniqueness20bp.wig.gz wgEncodeDukeUniqueness20bp.wig.gz mv wgEncodeDukeDNaseSeqUniqueness24bp.wig.gz wgEncodeDukeUniqueness24bp.wig.gz mv wgEncodeDukeDNaseSeqUniqueness35bp.wig.gz wgEncodeDukeUniqueness35bp.wig.gz Getting ready for pushQ 2009-5-12 ================================= trackDb wgEncodeDukeDNaseSeqBaseOverlapSignalGm12878 wgEncodeDukeDNaseSeqBaseOverlapSignalHelas3 wgEncodeDukeDNaseSeqBaseOverlapSignalHepg2 wgEncodeDukeDNaseSeqBaseOverlapSignalK562 wgEncodeDukeDNaseSeqPeaksGm12878 wgEncodeDukeDNaseSeqPeaksHelas3 wgEncodeDukeDNaseSeqPeaksHepg2 wgEncodeDukeDNaseSeqPeaksK562 wgEncodeDukeDNaseSeqRawSignalRep1Gm12878 wgEncodeDukeDNaseSeqRawSignalRep1Helas3 wgEncodeDukeDNaseSeqRawSignalRep1Hepg2 wgEncodeDukeDNaseSeqRawSignalRep1K562 wgEncodeDukeDNaseSeqRawSignalRep2Gm12878 wgEncodeDukeDNaseSeqRawSignalRep2Helas3 wgEncodeDukeDNaseSeqRawSignalRep2Hepg2 wgEncodeDukeDNaseSeqRawSignalRep2K562 wgEncodeDukeDNaseSeqRawSignalRep3Gm12878 wgEncodeDukeDNaseSeqRawSignalRep3Helas3 wgEncodeDukeDNaseSeqRawSignalRep3Hepg2 wgEncodeDukeDNaseSeqRawSignalRep3K562 wgEncodeDukeDNaseSeqSignalGm12878 wgEncodeDukeDNaseSeqSignalHelas3 wgEncodeDukeDNaseSeqSignalHepg2 wgEncodeDukeDNaseSeqSignalK562 wgEncodeDukeRegionsExcluded wgEncodeUncFAIREseqBaseOverlapSignalGm12878 wgEncodeUncFAIREseqBaseOverlapSignalHelas3 wgEncodeUncFAIREseqBaseOverlapSignalHepg2 wgEncodeUncFAIREseqBaseOverlapSignalK562 wgEncodeUncFAIREseqPeaksGm12878 wgEncodeUncFAIREseqPeaksHepg2 wgEncodeUncFAIREseqPeaksK562 wgEncodeUncFAIREseqRawSignalRep1Gm12878 wgEncodeUncFAIREseqRawSignalRep1Helas3 wgEncodeUncFAIREseqRawSignalRep1Hepg2 wgEncodeUncFAIREseqRawSignalRep1K562 wgEncodeUncFAIREseqRawSignalRep2Gm12878 wgEncodeUncFAIREseqRawSignalRep2Helas3 wgEncodeUncFAIREseqRawSignalRep2Hepg2 wgEncodeUncFAIREseqRawSignalRep2K562 wgEncodeUncFAIREseqRawSignalRep3Gm12878 wgEncodeUncFAIREseqRawSignalRep3Helas3 wgEncodeUncFAIREseqRawSignalRep3Hepg2 wgEncodeUncFAIREseqRawSignalRep3K562 wgEncodeUncFAIREseqSignalGm12878 wgEncodeUncFAIREseqSignalHelas3 wgEncodeUncFAIREseqSignalHepg2 wgEncodeUncFAIREseqSignalK562 wgEncodeUtaChIPseqBaseOverlapSignalGm12878Ctcf wgEncodeUtaChIPseqBaseOverlapSignalHelas3Cmyc wgEncodeUtaChIPseqBaseOverlapSignalHelas3Ctcf wgEncodeUtaChIPseqBaseOverlapSignalHepg2Cmyc wgEncodeUtaChIPseqBaseOverlapSignalHepg2Ctcf wgEncodeUtaChIPseqBaseOverlapSignalK562Cmyc wgEncodeUtaChIPseqBaseOverlapSignalK562Ctcf wgEncodeUtaChIPseqPeaksGm12878Ctcf wgEncodeUtaChIPseqPeaksHelas3Cmyc wgEncodeUtaChIPseqPeaksHelas3Ctcf wgEncodeUtaChIPseqPeaksHepg2Cmyc wgEncodeUtaChIPseqPeaksHepg2Ctcf wgEncodeUtaChIPseqPeaksK562Cmyc wgEncodeUtaChIPseqPeaksK562Ctcf wgEncodeUtaChIPseqRawSignalGm12878Input wgEncodeUtaChIPseqRawSignalHelas3Input wgEncodeUtaChIPseqRawSignalHepg2Input wgEncodeUtaChIPseqRawSignalK562Input wgEncodeUtaChIPseqRawSignalRep1Gm12878Ctcf wgEncodeUtaChIPseqRawSignalRep1Helas3Cmyc wgEncodeUtaChIPseqRawSignalRep1Helas3Ctcf wgEncodeUtaChIPseqRawSignalRep1Hepg2Cmyc wgEncodeUtaChIPseqRawSignalRep1Hepg2Ctcf wgEncodeUtaChIPseqRawSignalRep1K562Cmyc wgEncodeUtaChIPseqRawSignalRep1K562Ctcf wgEncodeUtaChIPseqRawSignalRep2Gm12878Ctcf wgEncodeUtaChIPseqRawSignalRep2Helas3Cmyc wgEncodeUtaChIPseqRawSignalRep2Helas3Ctcf wgEncodeUtaChIPseqRawSignalRep2Hepg2Cmyc wgEncodeUtaChIPseqRawSignalRep2Hepg2Ctcf wgEncodeUtaChIPseqRawSignalRep2K562Cmyc wgEncodeUtaChIPseqRawSignalRep2K562Ctcf wgEncodeUtaChIPseqRawSignalRep3Gm12878Ctcf wgEncodeUtaChIPseqRawSignalRep3Hepg2Cmyc wgEncodeUtaChIPseqRawSignalRep3K562Cmyc wgEncodeUtaChIPseqRawSignalRep3K562Ctcf wgEncodeUtaChIPseqSignalGm12878Ctcf wgEncodeUtaChIPseqSignalHelas3Cmyc wgEncodeUtaChIPseqSignalHelas3Ctcf wgEncodeUtaChIPseqSignalHepg2Cmyc wgEncodeUtaChIPseqSignalHepg2Ctcf wgEncodeUtaChIPseqSignalK562Cmyc wgEncodeUtaChIPseqSignalK562Ctcf wgEncodeUtaustinChIPseqSignalGm12878Input wgEncodeUtaustinChIPseqSignalHelas3Input wgEncodeUtaustinChIPseqSignalHepg2Input wgEncodeUtaustinChIPseqSignalK562Input NOTE: Missing HelaS3 Peaks! NOTE: Missing GM12878/c-Myc Note: All (non-input) have 2 reps except GM12878/CTCF,HepG2/c-Myc,K562/c-Myc,K562/CTCF /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/index.html /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqAlignmentsRep1Gm12878.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqAlignmentsRep1Helas3.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqAlignmentsRep1Hepg2.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqAlignmentsRep1K562.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqAlignmentsRep2Gm12878.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqAlignmentsRep2Helas3.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqAlignmentsRep2Hepg2.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqAlignmentsRep2K562.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqAlignmentsRep3Gm12878.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqAlignmentsRep3Helas3.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqAlignmentsRep3Hepg2.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqAlignmentsRep3K562.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqBaseOverlapSignalGm12878.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqBaseOverlapSignalHelas3.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqBaseOverlapSignalHepg2.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqBaseOverlapSignalK562.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqPeaksGm12878.narrowPeak.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqPeaksHelas3.narrowPeak.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqPeaksHepg2.narrowPeak.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqPeaksK562.narrowPeak.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqRawDataRep1Gm12878.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqRawDataRep1Helas3.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqRawDataRep1Hepg2.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqRawDataRep1K562.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqRawDataRep2Gm12878.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqRawDataRep2Helas3.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqRawDataRep2Hepg2.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqRawDataRep2K562.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqRawDataRep3Gm12878.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqRawDataRep3Helas3.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqRawDataRep3Hepg2.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqRawDataRep3K562.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqSignalGm12878.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqSignalHelas3.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqSignalHepg2.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqSignalK562.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeRegionsExcluded.bed6.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUncFAIREseqAlignmentsRep1Gm12878.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUncFAIREseqAlignmentsRep1Helas3.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUncFAIREseqAlignmentsRep1Hepg2.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUncFAIREseqAlignmentsRep1K562.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUncFAIREseqAlignmentsRep2Gm12878.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUncFAIREseqAlignmentsRep2Helas3.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUncFAIREseqAlignmentsRep2Hepg2.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUncFAIREseqAlignmentsRep2K562.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUncFAIREseqAlignmentsRep3Gm12878.tagAlign.gz 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/usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUncFAIREseqPeaksHepg2.narrowPeak.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUncFAIREseqPeaksK562.narrowPeak.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUncFAIREseqRawDataRep1Gm12878.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUncFAIREseqRawDataRep1Helas3.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUncFAIREseqRawDataRep1Hepg2.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUncFAIREseqRawDataRep1K562.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUncFAIREseqRawDataRep2Gm12878.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUncFAIREseqRawDataRep2Helas3.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUncFAIREseqRawDataRep2Hepg2.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUncFAIREseqRawDataRep2K562.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUncFAIREseqRawDataRep3Gm12878.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUncFAIREseqRawDataRep3Helas3.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUncFAIREseqRawDataRep3Hepg2.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUncFAIREseqRawDataRep3K562.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUncFAIREseqSignalGm12878.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUncFAIREseqSignalHelas3.wig.gz 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/usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqAlignmentsRep1K562Ctcf.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqAlignmentsRep2Gm12878Ctcf.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqAlignmentsRep2Helas3Cmyc.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqAlignmentsRep2Helas3Ctcf.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqAlignmentsRep2Hepg2Cmyc.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqAlignmentsRep2Hepg2Ctcf.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqAlignmentsRep2K562Cmyc.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqAlignmentsRep2K562Ctcf.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqAlignmentsRep3Gm12878Ctcf.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqAlignmentsRep3Hepg2Cmyc.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqAlignmentsRep3K562Cmyc.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqAlignmentsRep3K562Ctcf.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqBaseOverlapSignalGm12878Ctcf.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqBaseOverlapSignalHelas3Cmyc.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqBaseOverlapSignalHelas3Ctcf.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqBaseOverlapSignalHepg2Cmyc.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqBaseOverlapSignalHepg2Ctcf.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqBaseOverlapSignalK562Cmyc.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqBaseOverlapSignalK562Ctcf.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqPeaksGm12878Ctcf.narrowPeak.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqPeaksHelas3Cmyc.narrowPeak.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqPeaksHelas3Ctcf.narrowPeak.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqPeaksHepg2Cmyc.narrowPeak.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqPeaksHepg2Ctcf.narrowPeak.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqPeaksK562Cmyc.narrowPeak.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqPeaksK562Ctcf.narrowPeak.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqRawDataRep1Gm12878Ctcf.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqRawDataRep1Helas3Cmyc.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqRawDataRep1Helas3Ctcf.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqRawDataRep1Hepg2Cmyc.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqRawDataRep1Hepg2Ctcf.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqRawDataRep1K562Cmyc.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqRawDataRep1K562Ctcf.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqRawDataRep2Gm12878Ctcf.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqRawDataRep2Helas3Cmyc.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqRawDataRep2Helas3Ctcf.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqRawDataRep2Hepg2Cmyc.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqRawDataRep2Hepg2Ctcf.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqRawDataRep2K562Cmyc.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqRawDataRep2K562Ctcf.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqRawDataRep3Gm12878Ctcf.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqRawDataRep3Hepg2Cmyc.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqRawDataRep3K562Cmyc.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqRawDataRep3K562Ctcf.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqSignalGm12878Ctcf.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqSignalHelas3Cmyc.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqSignalHelas3Ctcf.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqSignalHepg2Cmyc.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqSignalHepg2Ctcf.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqSignalK562Cmyc.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqSignalK562Ctcf.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaustinChIPseqAlignmentsGm12878Input.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaustinChIPseqAlignmentsHelas3Input.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaustinChIPseqAlignmentsHepg2Input.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaustinChIPseqAlignmentsK562Input.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaustinChIPseqRawDataGm12878Input.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaustinChIPseqRawDataHelas3Input.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaustinChIPseqRawDataHepg2Input.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaustinChIPseqRawDataK562Input.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaustinChIPseqSignalGm12878Input.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaustinChIPseqSignalHelas3Input.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaustinChIPseqSignalHepg2Input.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaustinChIPseqSignalK562Input.wig.gz # Not yet available /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqRawSignalRep1Gm12878.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqRawSignalRep1Helas3.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqRawSignalRep1Hepg2.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqRawSignalRep1K562.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqRawSignalRep2Gm12878.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqRawSignalRep2Helas3.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqRawSignalRep2Hepg2.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqRawSignalRep2K562.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqRawSignalRep3Gm12878.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqRawSignalRep3Helas3.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqRawSignalRep3Hepg2.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqRawSignalRep3K562.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUncFAIREseqRawSignalRep1Gm12878.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUncFAIREseqRawSignalRep1Helas3.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUncFAIREseqRawSignalRep1Hepg2.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUncFAIREseqRawSignalRep1K562.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUncFAIREseqRawSignalRep2Gm12878.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUncFAIREseqRawSignalRep2Helas3.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUncFAIREseqRawSignalRep2Hepg2.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUncFAIREseqRawSignalRep2K562.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUncFAIREseqRawSignalRep3Gm12878.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUncFAIREseqRawSignalRep3Helas3.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUncFAIREseqRawSignalRep3Hepg2.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUncFAIREseqRawSignalRep3K562.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqRawSignalRep1Gm12878Ctcf.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqRawSignalRep1Helas3Cmyc.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqRawSignalRep1Helas3Ctcf.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqRawSignalRep1Hepg2Cmyc.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqRawSignalRep1Hepg2Ctcf.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqRawSignalRep1K562Cmyc.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqRawSignalRep1K562Ctcf.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqRawSignalRep2Gm12878Ctcf.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqRawSignalRep2Helas3Cmyc.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqRawSignalRep2Helas3Ctcf.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqRawSignalRep2Hepg2Cmyc.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqRawSignalRep2Hepg2Ctcf.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqRawSignalRep2K562Cmyc.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqRawSignalRep2K562Ctcf.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqRawSignalRep3Gm12878Ctcf.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqRawSignalRep3Hepg2Cmyc.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqRawSignalRep3K562Cmyc.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqRawSignalRep3K562Ctcf.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaustinChIPseqRawSignalGm12878Input.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaustinChIPseqRawSignalHelas3Input.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaustinChIPseqRawSignalHepg2Input.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaustinChIPseqRawSignalK562Input.wig.gz /cluster/data/encode/pipeline/bin/encodeStatus.pl 12 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 31 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 34 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 79 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 80 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 109 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 112 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 113 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 114 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 115 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 116 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 117 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 127 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 131 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 228 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 231 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 233 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 234 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 235 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 244 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 245 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 258 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 272 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 274 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 275 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 278 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 280 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 281 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 282 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 283 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 284 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 285 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 286 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 287 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 325 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 326 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 327 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 328 approved ### Opps. SOme have been superceded update projects set status = "superceded" where id = 233; update projects set status = "superceded" where id = 114; update projects set status = "superceded" where id = 79; update projects set status = "superceded" where id = 33; update projects set status = "superceded" where id = 115; update projects set status = "superceded" where id = 80; update projects set status = "superceded" where id = 32; # Move superceded dir out of the way: cd encpipeline_prod mkdir superceded mv 233 superceded/ mv 114 superceded/ 79 superceded/ mv 33 superceded/ mv 115 superceded/ mv 80 superceded/ mv 32 superceded/ mv 66 superceded/ mv 108 superceded/ # Not yet for uniqueness tracks: | wgEncodeDukeUniqueness20bp | | wgEncodeDukeUniqueness24bp | | wgEncodeDukeUniqueness35bp | /cluster/data/encode/pipeline/bin/encodeStatus.pl 104 approved New ro reregnerate Raw Sigs 2009-05-22 ====================================== drop table wgEncodeDukeDNaseSeqRawSignalRep1Gm12878_terry; drop table wgEncodeDukeDNaseSeqRawSignalRep1Helas3_terry ; drop table wgEncodeDukeDNaseSeqRawSignalRep1Hepg2_terry ; drop table wgEncodeDukeDNaseSeqRawSignalRep1K562_terry ; drop table wgEncodeDukeDNaseSeqRawSignalRep2Gm12878_terry; drop table wgEncodeDukeDNaseSeqRawSignalRep2Helas3_terry ; drop table wgEncodeDukeDNaseSeqRawSignalRep2Hepg2_terry ; drop table wgEncodeDukeDNaseSeqRawSignalRep2K562_terry ; drop table wgEncodeDukeDNaseSeqRawSignalRep3Gm12878_terry; drop table wgEncodeDukeDNaseSeqRawSignalRep3Helas3_terry ; drop table wgEncodeDukeDNaseSeqRawSignalRep3Hepg2_terry ; drop table wgEncodeDukeDNaseSeqRawSignalRep3K562_terry ; drop table wgEncodeUncFAIREseqRawSignalRep1Gm12878_terry ; drop table wgEncodeUncFAIREseqRawSignalRep1Helas3_terry ; drop table wgEncodeUncFAIREseqRawSignalRep1Hepg2_terry ; drop table wgEncodeUncFAIREseqRawSignalRep1K562_terry ; drop table wgEncodeUncFAIREseqRawSignalRep2Gm12878_terry ; drop table wgEncodeUncFAIREseqRawSignalRep2Helas3_terry ; drop table wgEncodeUncFAIREseqRawSignalRep2Hepg2_terry ; drop table wgEncodeUncFAIREseqRawSignalRep2K562_terry ; drop table wgEncodeUncFAIREseqRawSignalRep3Gm12878_terry ; drop table wgEncodeUncFAIREseqRawSignalRep3Helas3_terry ; drop table wgEncodeUncFAIREseqRawSignalRep3Hepg2_terry ; drop table wgEncodeUncFAIREseqRawSignalRep3K562_terry ; drop table wgEncodeUtaChIPseqRawSignalRep1Gm12878Ctcf_terry; drop table wgEncodeUtaChIPseqRawSignalRep1Helas3Cmyc_terry ; drop table wgEncodeUtaChIPseqRawSignalRep1Helas3Ctcf_terry ; drop table wgEncodeUtaChIPseqRawSignalRep1Hepg2Cmyc_terry ; drop table wgEncodeUtaChIPseqRawSignalRep1Hepg2Ctcf_terry ; drop table wgEncodeUtaChIPseqRawSignalRep1K562Cmyc_terry ; drop table wgEncodeUtaChIPseqRawSignalRep1K562Ctcf_terry ; drop table wgEncodeUtaChIPseqRawSignalRep2Gm12878Ctcf_terry; drop table wgEncodeUtaChIPseqRawSignalRep2Helas3Cmyc_terry ; drop table wgEncodeUtaChIPseqRawSignalRep2Helas3Ctcf_terry ; drop table wgEncodeUtaChIPseqRawSignalRep2Hepg2Cmyc_terry ; drop table wgEncodeUtaChIPseqRawSignalRep2Hepg2Ctcf_terry ; drop table wgEncodeUtaChIPseqRawSignalRep2K562Cmyc_terry ; drop table wgEncodeUtaChIPseqRawSignalRep2K562Ctcf_terry ; drop table wgEncodeUtaChIPseqRawSignalRep3Gm12878Ctcf_terry; drop table wgEncodeUtaChIPseqRawSignalRep3Hepg2Cmyc_terry ; drop table wgEncodeUtaChIPseqRawSignalRep3K562Cmyc_terry ; drop table wgEncodeUtaChIPseqRawSignalRep3K562Ctcf_terry ; drop table wgEncodeUtaustinChIPseqRawSignalGm12878Input_terry ; drop table wgEncodeUtaustinChIPseqRawSignalHelas3Input_terry ; drop table wgEncodeUtaustinChIPseqRawSignalHepg2Input_terry ; drop table wgEncodeUtaustinChIPseqRawSignalK562Input_terry ; cd ../325; doEncodeValidate.pl -quick -allowReloads x ../325 > validate_errors 2>&1 & cd ../326; doEncodeValidate.pl -quick -allowReloads x ../326 > validate_errors 2>&1 & cd ../327; doEncodeValidate.pl -quick -allowReloads x ../327 > validate_errors 2>&1 & cd ../328; doEncodeValidate.pl -quick -allowReloads x ../328 > validate_errors 2>&1 & ll autoRawSignal?.bed psg doEnc tail autoRawSignal3.bed cd ../325; doEncodeLoad.pl x ../325 > load_error 2>&1 & cd ../326; doEncodeLoad.pl x ../326 > load_error 2>&1 & cd ../327; doEncodeLoad.pl x ../327 > load_error 2>&1 & cd ../328; doEncodeLoad.pl x ../328 > load_error 2>&1 & # OUCH all wer loaded with the submission dir appended to the tablename!!! drop table wgEncodeDukeDNaseSeqRawSignalRep1Gm12878; drop table wgEncodeDukeDNaseSeqRawSignalRep1Helas3 ; drop table wgEncodeDukeDNaseSeqRawSignalRep1Hepg2 ; drop table wgEncodeDukeDNaseSeqRawSignalRep1K562 ; drop table wgEncodeDukeDNaseSeqRawSignalRep2Gm12878; drop table wgEncodeDukeDNaseSeqRawSignalRep2Helas3 ; drop table wgEncodeDukeDNaseSeqRawSignalRep2Hepg2 ; drop table wgEncodeDukeDNaseSeqRawSignalRep2K562 ; drop table wgEncodeDukeDNaseSeqRawSignalRep3Gm12878; drop table wgEncodeDukeDNaseSeqRawSignalRep3Helas3 ; drop table wgEncodeDukeDNaseSeqRawSignalRep3Hepg2 ; drop table wgEncodeDukeDNaseSeqRawSignalRep3K562 ; rename table wgEncodeDukeDNaseSeqRawSignalRep1Gm12878_325 to wgEncodeDukeDNaseSeqRawSignalRep1Gm12878; rename table wgEncodeDukeDNaseSeqRawSignalRep1Helas3_325 to wgEncodeDukeDNaseSeqRawSignalRep1Helas3 ; rename table wgEncodeDukeDNaseSeqRawSignalRep1Hepg2_325 to wgEncodeDukeDNaseSeqRawSignalRep1Hepg2 ; rename table wgEncodeDukeDNaseSeqRawSignalRep1K562_325 to wgEncodeDukeDNaseSeqRawSignalRep1K562 ; rename table wgEncodeDukeDNaseSeqRawSignalRep2Gm12878_325 to wgEncodeDukeDNaseSeqRawSignalRep2Gm12878; rename table wgEncodeDukeDNaseSeqRawSignalRep2Helas3_325 to wgEncodeDukeDNaseSeqRawSignalRep2Helas3 ; rename table wgEncodeDukeDNaseSeqRawSignalRep2Hepg2_325 to wgEncodeDukeDNaseSeqRawSignalRep2Hepg2 ; rename table wgEncodeDukeDNaseSeqRawSignalRep2K562_325 to wgEncodeDukeDNaseSeqRawSignalRep2K562 ; rename table wgEncodeDukeDNaseSeqRawSignalRep3Gm12878_325 to wgEncodeDukeDNaseSeqRawSignalRep3Gm12878; rename table wgEncodeDukeDNaseSeqRawSignalRep3Helas3_325 to wgEncodeDukeDNaseSeqRawSignalRep3Helas3 ; rename table wgEncodeDukeDNaseSeqRawSignalRep3Hepg2_325 to wgEncodeDukeDNaseSeqRawSignalRep3Hepg2 ; rename table wgEncodeDukeDNaseSeqRawSignalRep3K562_325 to wgEncodeDukeDNaseSeqRawSignalRep3K562 ; drop table wgEncodeUncFAIREseqRawSignalRep1Gm12878; drop table wgEncodeUncFAIREseqRawSignalRep1Helas3 ; drop table wgEncodeUncFAIREseqRawSignalRep1Hepg2 ; drop table wgEncodeUncFAIREseqRawSignalRep1K562 ; drop table wgEncodeUncFAIREseqRawSignalRep2Gm12878; drop table wgEncodeUncFAIREseqRawSignalRep2Helas3 ; drop table wgEncodeUncFAIREseqRawSignalRep2Hepg2 ; drop table wgEncodeUncFAIREseqRawSignalRep2K562 ; drop table wgEncodeUncFAIREseqRawSignalRep3Gm12878; drop table wgEncodeUncFAIREseqRawSignalRep3Helas3 ; drop table wgEncodeUncFAIREseqRawSignalRep3Hepg2 ; drop table wgEncodeUncFAIREseqRawSignalRep3K562 ; rename table wgEncodeUncFAIREseqRawSignalRep1Gm12878_326 to wgEncodeUncFAIREseqRawSignalRep1Gm12878; rename table wgEncodeUncFAIREseqRawSignalRep1Helas3_326 to wgEncodeUncFAIREseqRawSignalRep1Helas3 ; rename table wgEncodeUncFAIREseqRawSignalRep1Hepg2_326 to wgEncodeUncFAIREseqRawSignalRep1Hepg2 ; rename table wgEncodeUncFAIREseqRawSignalRep1K562_326 to wgEncodeUncFAIREseqRawSignalRep1K562 ; rename table wgEncodeUncFAIREseqRawSignalRep2Gm12878_326 to wgEncodeUncFAIREseqRawSignalRep2Gm12878; rename table wgEncodeUncFAIREseqRawSignalRep2Helas3_326 to wgEncodeUncFAIREseqRawSignalRep2Helas3 ; rename table wgEncodeUncFAIREseqRawSignalRep2Hepg2_326 to wgEncodeUncFAIREseqRawSignalRep2Hepg2 ; rename table wgEncodeUncFAIREseqRawSignalRep2K562_326 to wgEncodeUncFAIREseqRawSignalRep2K562 ; rename table wgEncodeUncFAIREseqRawSignalRep3Gm12878_326 to wgEncodeUncFAIREseqRawSignalRep3Gm12878; rename table wgEncodeUncFAIREseqRawSignalRep3Helas3_326 to wgEncodeUncFAIREseqRawSignalRep3Helas3 ; rename table wgEncodeUncFAIREseqRawSignalRep3Hepg2_326 to wgEncodeUncFAIREseqRawSignalRep3Hepg2 ; rename table wgEncodeUncFAIREseqRawSignalRep3K562_326 to wgEncodeUncFAIREseqRawSignalRep3K562 ; drop table wgEncodeUtaChIPseqRawSignalRep1Gm12878Ctcf; drop table wgEncodeUtaChIPseqRawSignalRep1Helas3Cmyc ; drop table wgEncodeUtaChIPseqRawSignalRep1Helas3Ctcf ; drop table wgEncodeUtaChIPseqRawSignalRep1Hepg2Cmyc ; drop table wgEncodeUtaChIPseqRawSignalRep1Hepg2Ctcf ; drop table wgEncodeUtaChIPseqRawSignalRep1K562Cmyc ; drop table wgEncodeUtaChIPseqRawSignalRep1K562Ctcf ; drop table wgEncodeUtaChIPseqRawSignalRep2Gm12878Ctcf; drop table wgEncodeUtaChIPseqRawSignalRep2Helas3Cmyc ; drop table wgEncodeUtaChIPseqRawSignalRep2Helas3Ctcf ; drop table wgEncodeUtaChIPseqRawSignalRep2Hepg2Cmyc ; drop table wgEncodeUtaChIPseqRawSignalRep2Hepg2Ctcf ; drop table wgEncodeUtaChIPseqRawSignalRep2K562Cmyc ; drop table wgEncodeUtaChIPseqRawSignalRep2K562Ctcf ; drop table wgEncodeUtaChIPseqRawSignalRep3Gm12878Ctcf; drop table wgEncodeUtaChIPseqRawSignalRep3Hepg2Cmyc ; drop table wgEncodeUtaChIPseqRawSignalRep3K562Cmyc ; drop table wgEncodeUtaChIPseqRawSignalRep3K562Ctcf ; rename table wgEncodeUtaChIPseqRawSignalRep1Gm12878Ctcf_327 to wgEncodeUtaChIPseqRawSignalRep1Gm12878Ctcf; rename table wgEncodeUtaChIPseqRawSignalRep1Helas3Cmyc_327 to wgEncodeUtaChIPseqRawSignalRep1Helas3Cmyc ; rename table wgEncodeUtaChIPseqRawSignalRep1Helas3Ctcf_327 to wgEncodeUtaChIPseqRawSignalRep1Helas3Ctcf ; rename table wgEncodeUtaChIPseqRawSignalRep1Hepg2Cmyc_327 to wgEncodeUtaChIPseqRawSignalRep1Hepg2Cmyc ; rename table wgEncodeUtaChIPseqRawSignalRep1Hepg2Ctcf_327 to wgEncodeUtaChIPseqRawSignalRep1Hepg2Ctcf ; rename table wgEncodeUtaChIPseqRawSignalRep1K562Cmyc_327 to wgEncodeUtaChIPseqRawSignalRep1K562Cmyc ; rename table wgEncodeUtaChIPseqRawSignalRep1K562Ctcf_327 to wgEncodeUtaChIPseqRawSignalRep1K562Ctcf ; rename table wgEncodeUtaChIPseqRawSignalRep2Gm12878Ctcf_327 to wgEncodeUtaChIPseqRawSignalRep2Gm12878Ctcf; rename table wgEncodeUtaChIPseqRawSignalRep2Helas3Cmyc_327 to wgEncodeUtaChIPseqRawSignalRep2Helas3Cmyc ; rename table wgEncodeUtaChIPseqRawSignalRep2Helas3Ctcf_327 to wgEncodeUtaChIPseqRawSignalRep2Helas3Ctcf ; rename table wgEncodeUtaChIPseqRawSignalRep2Hepg2Cmyc_327 to wgEncodeUtaChIPseqRawSignalRep2Hepg2Cmyc ; rename table wgEncodeUtaChIPseqRawSignalRep2Hepg2Ctcf_327 to wgEncodeUtaChIPseqRawSignalRep2Hepg2Ctcf ; rename table wgEncodeUtaChIPseqRawSignalRep2K562Cmyc_327 to wgEncodeUtaChIPseqRawSignalRep2K562Cmyc ; rename table wgEncodeUtaChIPseqRawSignalRep2K562Ctcf_327 to wgEncodeUtaChIPseqRawSignalRep2K562Ctcf ; rename table wgEncodeUtaChIPseqRawSignalRep3Gm12878Ctcf_327 to wgEncodeUtaChIPseqRawSignalRep3Gm12878Ctcf; rename table wgEncodeUtaChIPseqRawSignalRep3Hepg2Cmyc_327 to wgEncodeUtaChIPseqRawSignalRep3Hepg2Cmyc ; rename table wgEncodeUtaChIPseqRawSignalRep3K562Cmyc_327 to wgEncodeUtaChIPseqRawSignalRep3K562Cmyc ; rename table wgEncodeUtaChIPseqRawSignalRep3K562Ctcf_327 to wgEncodeUtaChIPseqRawSignalRep3K562Ctcf ; drop table wgEncodeUtaChIPseqRawSignalGm12878Input; drop table wgEncodeUtaChIPseqRawSignalHelas3Input ; drop table wgEncodeUtaChIPseqRawSignalHepg2Input ; drop table wgEncodeUtaChIPseqRawSignalK562Input ; rename table wgEncodeUtaChIPseqRawSignalGm12878Input_328 to wgEncodeUtaChIPseqRawSignalGm12878Input; rename table wgEncodeUtaChIPseqRawSignalHelas3Input_328 to wgEncodeUtaChIPseqRawSignalHelas3Input ; rename table wgEncodeUtaChIPseqRawSignalHepg2Input_328 to wgEncodeUtaChIPseqRawSignalHepg2Input ; rename table wgEncodeUtaChIPseqRawSignalK562Input_328 to wgEncodeUtaChIPseqRawSignalK562Input ; cd /hive/groups/encode/dcc/pipeline/encpipeline_prod/325 mv wgEncodeDukeDNaseSeqRawSignalRep1Gm12878_325.wib wgEncodeDukeDNaseSeqRawSignalRep1Gm12878.wib mv wgEncodeDukeDNaseSeqRawSignalRep1Helas3_325.wib wgEncodeDukeDNaseSeqRawSignalRep1Helas3.wib mv wgEncodeDukeDNaseSeqRawSignalRep1Hepg2_325.wib wgEncodeDukeDNaseSeqRawSignalRep1Hepg2.wib mv wgEncodeDukeDNaseSeqRawSignalRep1K562_325.wib wgEncodeDukeDNaseSeqRawSignalRep1K562.wib mv wgEncodeDukeDNaseSeqRawSignalRep2Gm12878_325.wib wgEncodeDukeDNaseSeqRawSignalRep2Gm12878.wib mv wgEncodeDukeDNaseSeqRawSignalRep2Helas3_325.wib wgEncodeDukeDNaseSeqRawSignalRep2Helas3.wib mv wgEncodeDukeDNaseSeqRawSignalRep2Hepg2_325.wib wgEncodeDukeDNaseSeqRawSignalRep2Hepg2.wib mv wgEncodeDukeDNaseSeqRawSignalRep2K562_325.wib wgEncodeDukeDNaseSeqRawSignalRep2K562.wib mv wgEncodeDukeDNaseSeqRawSignalRep3Gm12878_325.wib wgEncodeDukeDNaseSeqRawSignalRep3Gm12878.wib mv wgEncodeDukeDNaseSeqRawSignalRep3Helas3_325.wib wgEncodeDukeDNaseSeqRawSignalRep3Helas3.wib mv wgEncodeDukeDNaseSeqRawSignalRep3Hepg2_325.wib wgEncodeDukeDNaseSeqRawSignalRep3Hepg2.wib mv wgEncodeDukeDNaseSeqRawSignalRep3K562_325.wib wgEncodeDukeDNaseSeqRawSignalRep3K562.wib cd /gbdb/hg18/wib/ ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/325/wgEncodeDukeDNaseSeqRawSignalRep1Gm12878.wib wgEncodeDukeDNaseSeqRawSignalRep1Gm12878.wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/325/wgEncodeDukeDNaseSeqRawSignalRep1Helas3.wib wgEncodeDukeDNaseSeqRawSignalRep1Helas3.wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/325/wgEncodeDukeDNaseSeqRawSignalRep1Hepg2.wib wgEncodeDukeDNaseSeqRawSignalRep1Hepg2.wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/325/wgEncodeDukeDNaseSeqRawSignalRep1K562.wib wgEncodeDukeDNaseSeqRawSignalRep1K562.wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/325/wgEncodeDukeDNaseSeqRawSignalRep2Gm12878.wib wgEncodeDukeDNaseSeqRawSignalRep2Gm12878.wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/325/wgEncodeDukeDNaseSeqRawSignalRep2Helas3.wib wgEncodeDukeDNaseSeqRawSignalRep2Helas3.wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/325/wgEncodeDukeDNaseSeqRawSignalRep2Hepg2.wib wgEncodeDukeDNaseSeqRawSignalRep2Hepg2.wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/325/wgEncodeDukeDNaseSeqRawSignalRep2K562.wib wgEncodeDukeDNaseSeqRawSignalRep2K562.wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/325/wgEncodeDukeDNaseSeqRawSignalRep3Gm12878.wib wgEncodeDukeDNaseSeqRawSignalRep3Gm12878.wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/325/wgEncodeDukeDNaseSeqRawSignalRep3Helas3.wib wgEncodeDukeDNaseSeqRawSignalRep3Helas3.wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/325/wgEncodeDukeDNaseSeqRawSignalRep3Hepg2.wib wgEncodeDukeDNaseSeqRawSignalRep3Hepg2.wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/325/wgEncodeDukeDNaseSeqRawSignalRep3K562.wib wgEncodeDukeDNaseSeqRawSignalRep3K562.wib update wgEncodeDukeDNaseSeqRawSignalRep1Gm12878 set file = "/gbdb/hg18/wib/wgEncodeDukeDNaseSeqRawSignalRep1Gm12878.wib"; update wgEncodeDukeDNaseSeqRawSignalRep1Helas3 set file = "/gbdb/hg18/wib/wgEncodeDukeDNaseSeqRawSignalRep1Helas3.wib"; update wgEncodeDukeDNaseSeqRawSignalRep1Hepg2 set file = "/gbdb/hg18/wib/wgEncodeDukeDNaseSeqRawSignalRep1Hepg2.wib"; update wgEncodeDukeDNaseSeqRawSignalRep1K562 set file = "/gbdb/hg18/wib/wgEncodeDukeDNaseSeqRawSignalRep1K562.wib"; update wgEncodeDukeDNaseSeqRawSignalRep2Gm12878 set file = "/gbdb/hg18/wib/wgEncodeDukeDNaseSeqRawSignalRep2Gm12878.wib"; update wgEncodeDukeDNaseSeqRawSignalRep2Helas3 set file = "/gbdb/hg18/wib/wgEncodeDukeDNaseSeqRawSignalRep2Helas3.wib"; update wgEncodeDukeDNaseSeqRawSignalRep2Hepg2 set file = "/gbdb/hg18/wib/wgEncodeDukeDNaseSeqRawSignalRep2Hepg2.wib"; update wgEncodeDukeDNaseSeqRawSignalRep2K562 set file = "/gbdb/hg18/wib/wgEncodeDukeDNaseSeqRawSignalRep2K562.wib"; update wgEncodeDukeDNaseSeqRawSignalRep3Gm12878 set file = "/gbdb/hg18/wib/wgEncodeDukeDNaseSeqRawSignalRep3Gm12878.wib"; update wgEncodeDukeDNaseSeqRawSignalRep3Helas3 set file = "/gbdb/hg18/wib/wgEncodeDukeDNaseSeqRawSignalRep3Helas3.wib"; update wgEncodeDukeDNaseSeqRawSignalRep3Hepg2 set file = "/gbdb/hg18/wib/wgEncodeDukeDNaseSeqRawSignalRep3Hepg2.wib"; update wgEncodeDukeDNaseSeqRawSignalRep3K562 set file = "/gbdb/hg18/wib/wgEncodeDukeDNaseSeqRawSignalRep3K562.wib"; cd /hive/groups/encode/dcc/pipeline/encpipeline_prod/326 mv wgEncodeUncFAIREseqRawSignalRep1Gm12878_326.wib wgEncodeUncFAIREseqRawSignalRep1Gm12878.wib mv wgEncodeUncFAIREseqRawSignalRep1Helas3_326.wib wgEncodeUncFAIREseqRawSignalRep1Helas3.wib mv wgEncodeUncFAIREseqRawSignalRep1Hepg2_326.wib wgEncodeUncFAIREseqRawSignalRep1Hepg2.wib mv wgEncodeUncFAIREseqRawSignalRep1K562_326.wib wgEncodeUncFAIREseqRawSignalRep1K562.wib mv wgEncodeUncFAIREseqRawSignalRep2Gm12878_326.wib wgEncodeUncFAIREseqRawSignalRep2Gm12878.wib mv wgEncodeUncFAIREseqRawSignalRep2Helas3_326.wib wgEncodeUncFAIREseqRawSignalRep2Helas3.wib mv wgEncodeUncFAIREseqRawSignalRep2Hepg2_326.wib wgEncodeUncFAIREseqRawSignalRep2Hepg2.wib mv wgEncodeUncFAIREseqRawSignalRep2K562_326.wib wgEncodeUncFAIREseqRawSignalRep2K562.wib mv wgEncodeUncFAIREseqRawSignalRep3Gm12878_326.wib wgEncodeUncFAIREseqRawSignalRep3Gm12878.wib mv wgEncodeUncFAIREseqRawSignalRep3Helas3_326.wib wgEncodeUncFAIREseqRawSignalRep3Helas3.wib mv wgEncodeUncFAIREseqRawSignalRep3Hepg2_326.wib wgEncodeUncFAIREseqRawSignalRep3Hepg2.wib mv wgEncodeUncFAIREseqRawSignalRep3K562_326.wib wgEncodeUncFAIREseqRawSignalRep3K562.wib cd /gbdb/hg18/wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/326/wgEncodeUncFAIREseqRawSignalRep1Gm12878.wib wgEncodeUncFAIREseqRawSignalRep1Gm12878.wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/326/wgEncodeUncFAIREseqRawSignalRep1Helas3.wib wgEncodeUncFAIREseqRawSignalRep1Helas3.wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/326/wgEncodeUncFAIREseqRawSignalRep1Hepg2.wib wgEncodeUncFAIREseqRawSignalRep1Hepg2.wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/326/wgEncodeUncFAIREseqRawSignalRep1K562.wib wgEncodeUncFAIREseqRawSignalRep1K562.wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/326/wgEncodeUncFAIREseqRawSignalRep2Gm12878.wib wgEncodeUncFAIREseqRawSignalRep2Gm12878.wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/326/wgEncodeUncFAIREseqRawSignalRep2Helas3.wib wgEncodeUncFAIREseqRawSignalRep2Helas3.wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/326/wgEncodeUncFAIREseqRawSignalRep2Hepg2.wib wgEncodeUncFAIREseqRawSignalRep2Hepg2.wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/326/wgEncodeUncFAIREseqRawSignalRep2K562.wib wgEncodeUncFAIREseqRawSignalRep2K562.wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/326/wgEncodeUncFAIREseqRawSignalRep3Gm12878.wib wgEncodeUncFAIREseqRawSignalRep3Gm12878.wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/326/wgEncodeUncFAIREseqRawSignalRep3Helas3.wib wgEncodeUncFAIREseqRawSignalRep3Helas3.wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/326/wgEncodeUncFAIREseqRawSignalRep3Hepg2.wib wgEncodeUncFAIREseqRawSignalRep3Hepg2.wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/326/wgEncodeUncFAIREseqRawSignalRep3K562.wib wgEncodeUncFAIREseqRawSignalRep3K562.wib update wgEncodeUncFAIREseqRawSignalRep1Gm12878 set file = "/gbdb/hg18/wib/wgEncodeUncFAIREseqRawSignalRep1Gm12878.wib"; update wgEncodeUncFAIREseqRawSignalRep1Helas3 set file = "/gbdb/hg18/wib/wgEncodeUncFAIREseqRawSignalRep1Helas3.wib"; update wgEncodeUncFAIREseqRawSignalRep1Hepg2 set file = "/gbdb/hg18/wib/wgEncodeUncFAIREseqRawSignalRep1Hepg2.wib"; update wgEncodeUncFAIREseqRawSignalRep1K562 set file = "/gbdb/hg18/wib/wgEncodeUncFAIREseqRawSignalRep1K562.wib"; update wgEncodeUncFAIREseqRawSignalRep2Gm12878 set file = "/gbdb/hg18/wib/wgEncodeUncFAIREseqRawSignalRep2Gm12878.wib"; update wgEncodeUncFAIREseqRawSignalRep2Helas3 set file = "/gbdb/hg18/wib/wgEncodeUncFAIREseqRawSignalRep2Helas3.wib"; update wgEncodeUncFAIREseqRawSignalRep2Hepg2 set file = "/gbdb/hg18/wib/wgEncodeUncFAIREseqRawSignalRep2Hepg2.wib"; update wgEncodeUncFAIREseqRawSignalRep2K562 set file = "/gbdb/hg18/wib/wgEncodeUncFAIREseqRawSignalRep2K562.wib"; update wgEncodeUncFAIREseqRawSignalRep3Gm12878 set file = "/gbdb/hg18/wib/wgEncodeUncFAIREseqRawSignalRep3Gm12878.wib"; update wgEncodeUncFAIREseqRawSignalRep3Helas3 set file = "/gbdb/hg18/wib/wgEncodeUncFAIREseqRawSignalRep3Helas3.wib"; update wgEncodeUncFAIREseqRawSignalRep3Hepg2 set file = "/gbdb/hg18/wib/wgEncodeUncFAIREseqRawSignalRep3Hepg2.wib"; update wgEncodeUncFAIREseqRawSignalRep3K562 set file = "/gbdb/hg18/wib/wgEncodeUncFAIREseqRawSignalRep3K562.wib"; cd /hive/groups/encode/dcc/pipeline/encpipeline_prod/327 mv wgEncodeUtaChIPseqRawSignalRep1Gm12878Ctcf_327.wib wgEncodeUtaChIPseqRawSignalRep1Gm12878Ctcf.wib mv wgEncodeUtaChIPseqRawSignalRep1Helas3Cmyc_327.wib wgEncodeUtaChIPseqRawSignalRep1Helas3Cmyc.wib mv wgEncodeUtaChIPseqRawSignalRep1Helas3Ctcf_327.wib wgEncodeUtaChIPseqRawSignalRep1Helas3Ctcf.wib mv wgEncodeUtaChIPseqRawSignalRep1Hepg2Cmyc_327.wib wgEncodeUtaChIPseqRawSignalRep1Hepg2Cmyc.wib mv wgEncodeUtaChIPseqRawSignalRep1Hepg2Ctcf_327.wib wgEncodeUtaChIPseqRawSignalRep1Hepg2Ctcf.wib mv wgEncodeUtaChIPseqRawSignalRep1K562Cmyc_327.wib wgEncodeUtaChIPseqRawSignalRep1K562Cmyc.wib mv wgEncodeUtaChIPseqRawSignalRep1K562Ctcf_327.wib wgEncodeUtaChIPseqRawSignalRep1K562Ctcf.wib mv wgEncodeUtaChIPseqRawSignalRep2Gm12878Ctcf_327.wib wgEncodeUtaChIPseqRawSignalRep2Gm12878Ctcf.wib mv wgEncodeUtaChIPseqRawSignalRep2Helas3Cmyc_327.wib wgEncodeUtaChIPseqRawSignalRep2Helas3Cmyc.wib mv wgEncodeUtaChIPseqRawSignalRep2Helas3Ctcf_327.wib wgEncodeUtaChIPseqRawSignalRep2Helas3Ctcf.wib mv wgEncodeUtaChIPseqRawSignalRep2Hepg2Cmyc_327.wib wgEncodeUtaChIPseqRawSignalRep2Hepg2Cmyc.wib mv wgEncodeUtaChIPseqRawSignalRep2Hepg2Ctcf_327.wib wgEncodeUtaChIPseqRawSignalRep2Hepg2Ctcf.wib mv wgEncodeUtaChIPseqRawSignalRep2K562Cmyc_327.wib wgEncodeUtaChIPseqRawSignalRep2K562Cmyc.wib mv wgEncodeUtaChIPseqRawSignalRep2K562Ctcf_327.wib wgEncodeUtaChIPseqRawSignalRep2K562Ctcf.wib mv wgEncodeUtaChIPseqRawSignalRep3Gm12878Ctcf_327.wib wgEncodeUtaChIPseqRawSignalRep3Gm12878Ctcf.wib mv wgEncodeUtaChIPseqRawSignalRep3Hepg2Cmyc_327.wib wgEncodeUtaChIPseqRawSignalRep3Hepg2Cmyc.wib mv wgEncodeUtaChIPseqRawSignalRep3K562Cmyc_327.wib wgEncodeUtaChIPseqRawSignalRep3K562Cmyc.wib mv wgEncodeUtaChIPseqRawSignalRep3K562Ctcf_327.wib wgEncodeUtaChIPseqRawSignalRep3K562Ctcf.wib cd /gbdb/hg18/wib/ ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/327/wgEncodeUtaChIPseqRawSignalRep1Gm12878Ctcf.wib wgEncodeUtaChIPseqRawSignalRep1Gm12878Ctcf.wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/327/wgEncodeUtaChIPseqRawSignalRep1Helas3Cmyc.wib wgEncodeUtaChIPseqRawSignalRep1Helas3Cmyc.wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/327/wgEncodeUtaChIPseqRawSignalRep1Helas3Ctcf.wib wgEncodeUtaChIPseqRawSignalRep1Helas3Ctcf.wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/327/wgEncodeUtaChIPseqRawSignalRep1Hepg2Cmyc.wib wgEncodeUtaChIPseqRawSignalRep1Hepg2Cmyc.wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/327/wgEncodeUtaChIPseqRawSignalRep1Hepg2Ctcf.wib wgEncodeUtaChIPseqRawSignalRep1Hepg2Ctcf.wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/327/wgEncodeUtaChIPseqRawSignalRep1K562Cmyc.wib wgEncodeUtaChIPseqRawSignalRep1K562Cmyc.wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/327/wgEncodeUtaChIPseqRawSignalRep1K562Ctcf.wib wgEncodeUtaChIPseqRawSignalRep1K562Ctcf.wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/327/wgEncodeUtaChIPseqRawSignalRep2Gm12878Ctcf.wib wgEncodeUtaChIPseqRawSignalRep2Gm12878Ctcf.wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/327/wgEncodeUtaChIPseqRawSignalRep2Helas3Cmyc.wib wgEncodeUtaChIPseqRawSignalRep2Helas3Cmyc.wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/327/wgEncodeUtaChIPseqRawSignalRep2Helas3Ctcf.wib wgEncodeUtaChIPseqRawSignalRep2Helas3Ctcf.wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/327/wgEncodeUtaChIPseqRawSignalRep2Hepg2Cmyc.wib wgEncodeUtaChIPseqRawSignalRep2Hepg2Cmyc.wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/327/wgEncodeUtaChIPseqRawSignalRep2Hepg2Ctcf.wib wgEncodeUtaChIPseqRawSignalRep2Hepg2Ctcf.wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/327/wgEncodeUtaChIPseqRawSignalRep2K562Cmyc.wib wgEncodeUtaChIPseqRawSignalRep2K562Cmyc.wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/327/wgEncodeUtaChIPseqRawSignalRep2K562Ctcf.wib wgEncodeUtaChIPseqRawSignalRep2K562Ctcf.wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/327/wgEncodeUtaChIPseqRawSignalRep3Gm12878Ctcf.wib wgEncodeUtaChIPseqRawSignalRep3Gm12878Ctcf.wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/327/wgEncodeUtaChIPseqRawSignalRep3Hepg2Cmyc.wib wgEncodeUtaChIPseqRawSignalRep3Hepg2Cmyc.wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/327/wgEncodeUtaChIPseqRawSignalRep3K562Cmyc.wib wgEncodeUtaChIPseqRawSignalRep3K562Cmyc.wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/327/wgEncodeUtaChIPseqRawSignalRep3K562Ctcf.wib wgEncodeUtaChIPseqRawSignalRep3K562Ctcf.wib update wgEncodeUtaChIPseqRawSignalRep1Gm12878Ctcf set file = "/gbdb/hg18/wib/wgEncodeUtaChIPseqRawSignalRep1Gm12878Ctcf.wib"; update wgEncodeUtaChIPseqRawSignalRep1Helas3Cmyc set file = "/gbdb/hg18/wib/wgEncodeUtaChIPseqRawSignalRep1Helas3Cmyc.wib"; update wgEncodeUtaChIPseqRawSignalRep1Helas3Ctcf set file = "/gbdb/hg18/wib/wgEncodeUtaChIPseqRawSignalRep1Helas3Ctcf.wib"; update wgEncodeUtaChIPseqRawSignalRep1Hepg2Cmyc set file = "/gbdb/hg18/wib/wgEncodeUtaChIPseqRawSignalRep1Hepg2Cmyc.wib"; update wgEncodeUtaChIPseqRawSignalRep1Hepg2Ctcf set file = "/gbdb/hg18/wib/wgEncodeUtaChIPseqRawSignalRep1Hepg2Ctcf.wib"; update wgEncodeUtaChIPseqRawSignalRep1K562Cmyc set file = "/gbdb/hg18/wib/wgEncodeUtaChIPseqRawSignalRep1K562Cmyc.wib"; update wgEncodeUtaChIPseqRawSignalRep1K562Ctcf set file = "/gbdb/hg18/wib/wgEncodeUtaChIPseqRawSignalRep1K562Ctcf.wib"; update wgEncodeUtaChIPseqRawSignalRep2Gm12878Ctcf set file = "/gbdb/hg18/wib/wgEncodeUtaChIPseqRawSignalRep2Gm12878Ctcf.wib"; update wgEncodeUtaChIPseqRawSignalRep2Helas3Cmyc set file = "/gbdb/hg18/wib/wgEncodeUtaChIPseqRawSignalRep2Helas3Cmyc.wib"; update wgEncodeUtaChIPseqRawSignalRep2Helas3Ctcf set file = "/gbdb/hg18/wib/wgEncodeUtaChIPseqRawSignalRep2Helas3Ctcf.wib"; update wgEncodeUtaChIPseqRawSignalRep2Hepg2Cmyc set file = "/gbdb/hg18/wib/wgEncodeUtaChIPseqRawSignalRep2Hepg2Cmyc.wib"; update wgEncodeUtaChIPseqRawSignalRep2Hepg2Ctcf set file = "/gbdb/hg18/wib/wgEncodeUtaChIPseqRawSignalRep2Hepg2Ctcf.wib"; update wgEncodeUtaChIPseqRawSignalRep2K562Cmyc set file = "/gbdb/hg18/wib/wgEncodeUtaChIPseqRawSignalRep2K562Cmyc.wib"; update wgEncodeUtaChIPseqRawSignalRep2K562Ctcf set file = "/gbdb/hg18/wib/wgEncodeUtaChIPseqRawSignalRep2K562Ctcf.wib"; update wgEncodeUtaChIPseqRawSignalRep3Gm12878Ctcf set file = "/gbdb/hg18/wib/wgEncodeUtaChIPseqRawSignalRep3Gm12878Ctcf.wib"; update wgEncodeUtaChIPseqRawSignalRep3Hepg2Cmyc set file = "/gbdb/hg18/wib/wgEncodeUtaChIPseqRawSignalRep3Hepg2Cmyc.wib"; update wgEncodeUtaChIPseqRawSignalRep3K562Cmyc set file = "/gbdb/hg18/wib/wgEncodeUtaChIPseqRawSignalRep3K562Cmyc.wib"; update wgEncodeUtaChIPseqRawSignalRep3K562Ctcf set file = "/gbdb/hg18/wib/wgEncodeUtaChIPseqRawSignalRep3K562Ctcf.wib"; cd /hive/groups/encode/dcc/pipeline/encpipeline_prod/328 mv wgEncodeUtaChIPseqRawSignalGm12878Input_328.wib wgEncodeUtaChIPseqRawSignalGm12878Input.wib mv wgEncodeUtaChIPseqRawSignalHelas3Input_328.wib wgEncodeUtaChIPseqRawSignalHelas3Input.wib mv wgEncodeUtaChIPseqRawSignalHepg2Input_328.wib wgEncodeUtaChIPseqRawSignalHepg2Input.wib mv wgEncodeUtaChIPseqRawSignalK562Input_328.wib wgEncodeUtaChIPseqRawSignalK562Input.wib cd /gbdb/hg18/wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/328/wgEncodeUtaChIPseqRawSignalGm12878Input.wib wgEncodeUtaChIPseqRawSignalGm12878Input.wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/328/wgEncodeUtaChIPseqRawSignalHelas3Input.wib wgEncodeUtaChIPseqRawSignalHelas3Input.wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/328/wgEncodeUtaChIPseqRawSignalHepg2Input.wib wgEncodeUtaChIPseqRawSignalHepg2Input.wib ln -sf /hive/groups/encode/dcc/pipeline/encpipeline_prod/328/wgEncodeUtaChIPseqRawSignalK562Input.wib wgEncodeUtaChIPseqRawSignalK562Input.wib update wgEncodeUtaChIPseqRawSignalGm12878Input set file = "/gbdb/hg18/wib/wgEncodeUtaChIPseqRawSignalGm12878Input.wib"; update wgEncodeUtaChIPseqRawSignalHelas3Input set file = "/gbdb/hg18/wib/wgEncodeUtaChIPseqRawSignalHelas3Input.wib"; update wgEncodeUtaChIPseqRawSignalHepg2Input set file = "/gbdb/hg18/wib/wgEncodeUtaChIPseqRawSignalHepg2Input.wib"; update wgEncodeUtaChIPseqRawSignalK562Input set file = "/gbdb/hg18/wib/wgEncodeUtaChIPseqRawSignalK562Input.wib"; Load FAIRE Hela-S3 peaks which are missing 2009-05-22 ===================================================== # validation error on 336 because table in trackDb delete from trackDb where tableName like "wgEncodeUncFAIREseqPeaksHelas3"; # validation error because of zero length peak: Ask Terry. /cluster/data/encode/pipeline/bin/encodeStatus.pl 336 displayed Generate RawSignal files for download 2009-5-28 =============================================== from pip grep RawSignal 325/out/load.ra | grep auto >> 325/out/mkRawSigsFiles.sh grep RawSignal 325/out/load.ra | grep wgEncode >> 325/out/mkRawSigsFiles.sh ... Edit and then run 325/out/mkRawSigsFiles.sh placing *.wig.gz into downloads/wgEncodeChromatinMap/raw cd downloads/wgEncodeChromatinMap/raw cp ../preamble.html cp ../fileDb.ra edit preamble.html to note the subdirectory only contains Raw Signals encodeDownloadsPage.pl index.html Pushed into QA 2009-06-02 ========================= /cluster/data/encode/pipeline/bin/encodeStatus.pl 336 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 31 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 34 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 109 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 112 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 113 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 116 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 117 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 127 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 131 reviewing 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/cluster/data/encode/pipeline/bin/encodeStatus.pl 284 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 285 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 286 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 287 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 325 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 326 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 327 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 328 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 336 reviewing Pushed Mapability into QA 2009-06-15 ==================================== /cluster/data/encode/pipeline/bin/encodeStatus.pl 104 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 344 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 345 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 104 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 344 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 345 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 277 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 277 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 31 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 34 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 109 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 112 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 113 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 116 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 117 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 127 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 131 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 228 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 231 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 234 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 235 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 244 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 245 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 258 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 272 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 274 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 275 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 277 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 278 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 280 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 281 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 282 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 283 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 284 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 285 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 286 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 287 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 325 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 326 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 327 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 328 released Not yet: /cluster/data/encode/pipeline/bin/encodeStatus.pl 104 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 336 released New submissions 2009-09-01-07 ========================== select id,name,status, user_id from projects where user_id = 17 and status = "loaded"; +-----+-----------------------------------+--------+---------+ | id | name | status | user_id | +-----+-----------------------------------+--------+---------+ | 461 | DukeDnaseSeq GM12878 20090901 | loaded | 17 | | 468 | UTA CTCF GM12878 20090903 | loaded | 17 | | 471 | UNC FAIRE-Seq GM12878 20090906 | loaded | 17 | | 472 | UTA c-Myc GM12878 20090906 | loaded | 17 | | 482 | UTA ChIP-Seq c-Myc K562 20090906 | loaded | 17 | | 480 | Duke DNase-Seq K562 20090906 | loaded | 17 | | 481 | UTA ChIP-Seq CTCF K562 20090906 | loaded | 17 | | 483 | UNC FAIRE-Seq K562 20090906 | loaded | 17 | | 493 | UTA ChIP-Seq CTCF HelaS3 20090907 | loaded | 17 | | 494 | UNC FAIRE-Seq HelaS3 20090907 | loaded | 17 | | 495 | Duke DNase-Seq HelaS3 20090907 | loaded | 17 | +-----+-----------------------------------+--------+---------+ After some DAF manipulation and training Terry to new methods, all submitted fine. I did some massaging if the trackDb and fileDb.ra recs. /cluster/data/encode/pipeline/bin/encodeStatus.pl 461 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 468 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 471 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 472 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 480 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 481 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 482 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 483 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 493 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 494 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 495 displayed 2009-10-02 Data trickling which is not quite part of the freeze =============================================================== | 544 | DNCT UTA Input HUVEC 20090923 | loaded | | 545 | DNCT Duke DNaseHS HUVEC 20090924 | loaded | | 546 | DNCT UNC FAIRE-Seq HUVEC 20090924 | loaded | | 548 | DNCT UTA CTCF HUVEC 20090924 | loaded | | 552 | DNCT UTA PolII HUVEC 20090924 | loaded | | 555 | DNCT UTA CTCF HepG2 20090928 | loaded | | 556 | DNCT Duke DNaseHS HepG2 20090928 | loaded | | 557 | DNCT UNC FAIRE-Seq HepG2 20090928 | loaded | | 589 | DNCT UTA PolII HepG2 20090929 | loaded | | 588 | DNCT UTA PolII K562 20090929 | loaded | | 593 | DNCT UTA c-Myc HepG2 20090929 | loaded | | 594 | DNCT Duke DNaseHS Keratinocyte 20090929 | loaded | | 624 | DNCT UTA CTCF NHEK 20090929 | loaded | | 628 | DNCT Duke DNaseHS H1_hESC 20090930 | loaded | | 629 | DNCT UNC FAIRE-Seq H1-hESC 20090930 | loaded | | 630 | DNCT UNC FAIRE-Seq NHEK 20090930 | loaded | | 635 | DNCT UTA c-Myc HUVEC 20091001 | loaded | | 636 | DNCT UTA CTCF H1_hESC 20091001 | loaded | | 638 | DNCT UTA CTCF GM12892 20091002 | loaded | | 639 | DNCT UNC FAIRE-Seq HelaS3 20091002 | loaded | | 640 | DNCT UNC FAIRE-Seq K562 20091002 | loaded | | 641 | DNCT UTA PolII H1_hESC 20091002 | loaded | Tracy Ballinger has been working tirelessly to put the trackDb.wgEncode.ra and downloads dir into shape. 2009-10-12 Bring the trackDb.wgEncode/ra up-to-date =================================================== make alpha DBS=hg18 cd {downloadsDir} ### First prepare old release1 directory: mkdir release1 # save source of the RR index.html mv ../old/wgEncodeUtaChIPseqRawDataRep1Gm12878Ctcf.fastq.gz . mv ../old/wgEncodeUtaChIPseqRawDataRep2Gm12878Ctcf.fastq.gz . mv ../old/wgEncodeUtaChIPseqRawDataRep3Gm12878Ctcf.fastq.gz . mv ../old/wgEncodeUtaChIPseqPeaksGm12878Ctcf.narrowPeak.gz . mv ../old/wgEncodeUtaChIPseqAlignmentsRep1Gm12878Ctcf.tagAlign.gz . mv ../old/wgEncodeUtaChIPseqAlignmentsRep2Gm12878Ctcf.tagAlign.gz . mv ../old/wgEncodeUtaChIPseqAlignmentsRep3Gm12878Ctcf.tagAlign.gz . mv ../old/wgEncodeUtaChIPseqBaseOverlapSignalGm12878Ctcf.wig.gz . mv ../old/wgEncodeUtaChIPseqSignalGm12878Ctcf.wig.gz . ln ../wgEncodeUtaustinChIPseqRawDataGm12878Input.fastq.gz . ln ../wgEncodeUtaustinChIPseqAlignmentsGm12878Input.tagAlign.gz . ln ../wgEncodeUtaustinChIPseqSignalGm12878Input.wig.gz . mv ../old/wgEncodeDukeDNaseSeqRawDataRep1Gm12878.fastq.gz . mv ../old/wgEncodeDukeDNaseSeqRawDataRep2Gm12878.fastq.gz . mv ../old/wgEncodeDukeDNaseSeqRawDataRep3Gm12878.fastq.gz . mv ../old/wgEncodeDukeDNaseSeqPeaksGm12878.narrowPeak.gz . mv ../old/wgEncodeDukeDNaseSeqAlignmentsRep1Gm12878.tagAlign.gz . mv ../old/wgEncodeDukeDNaseSeqAlignmentsRep2Gm12878.tagAlign.gz . mv ../old/wgEncodeDukeDNaseSeqAlignmentsRep3Gm12878.tagAlign.gz . mv ../old/wgEncodeDukeDNaseSeqBaseOverlapSignalGm12878.wig.gz . mv ../old/wgEncodeDukeDNaseSeqSignalGm12878.wig.gz . mv ../old/wgEncodeUncFAIREseqRawDataRep1Gm12878.fastq.gz . mv ../old/wgEncodeUncFAIREseqRawDataRep2Gm12878.fastq.gz . mv ../old/wgEncodeUncFAIREseqRawDataRep3Gm12878.fastq.gz . mv ../old/wgEncodeUncFAIREseqPeaksGm12878.narrowPeak.gz . mv ../old/wgEncodeUncFAIREseqAlignmentsRep1Gm12878.tagAlign.gz . mv ../old/wgEncodeUncFAIREseqAlignmentsRep2Gm12878.tagAlign.gz . mv ../old/wgEncodeUncFAIREseqAlignmentsRep3Gm12878.tagAlign.gz . mv ../old/wgEncodeUncFAIREseqBaseOverlapSignalGm12878.wig.gz . mv ../old/wgEncodeUncFAIREseqSignalGm12878.wig.gz . mv ../old/wgEncodeUtaChIPseqRawDataRep1Helas3Ctcf.fastq.gz . mv ../old/wgEncodeUtaChIPseqRawDataRep2Helas3Ctcf.fastq.gz . mv ../old/wgEncodeUtaChIPseqPeaksHelas3Ctcf.narrowPeak.gz . mv ../old/wgEncodeUtaChIPseqAlignmentsRep1Helas3Ctcf.tagAlign.gz . mv ../old/wgEncodeUtaChIPseqAlignmentsRep2Helas3Ctcf.tagAlign.gz . mv ../old/wgEncodeUtaChIPseqBaseOverlapSignalHelas3Ctcf.wig.gz . mv ../old/wgEncodeUtaChIPseqSignalHelas3Ctcf.wig.gz . ln ../wgEncodeUtaustinChIPseqRawDataHelas3Input.fastq.gz . ln ../wgEncodeUtaustinChIPseqAlignmentsHelas3Input.tagAlign.gz . ln ../wgEncodeUtaustinChIPseqSignalHelas3Input.wig.gz . ln ../wgEncodeUtaChIPseqRawDataRep1Helas3Cmyc.fastq.gz . ln ../wgEncodeUtaChIPseqRawDataRep2Helas3Cmyc.fastq.gz . ln ../wgEncodeUtaChIPseqPeaksHelas3Cmyc.narrowPeak.gz . ln ../wgEncodeUtaChIPseqAlignmentsRep1Helas3Cmyc.tagAlign.gz . ln ../wgEncodeUtaChIPseqAlignmentsRep2Helas3Cmyc.tagAlign.gz . ln ../wgEncodeUtaChIPseqBaseOverlapSignalHelas3Cmyc.wig.gz . ln ../wgEncodeUtaChIPseqSignalHelas3Cmyc.wig.gz . mv ../old/wgEncodeDukeDNaseSeqRawDataRep1Helas3.fastq.gz . mv ../old/wgEncodeDukeDNaseSeqRawDataRep2Helas3.fastq.gz . mv ../old/wgEncodeDukeDNaseSeqRawDataRep3Helas3.fastq.gz . mv ../old/wgEncodeDukeDNaseSeqPeaksHelas3.narrowPeak.gz . mv ../old/wgEncodeDukeDNaseSeqAlignmentsRep1Helas3.tagAlign.gz . mv ../old/wgEncodeDukeDNaseSeqAlignmentsRep2Helas3.tagAlign.gz . mv ../old/wgEncodeDukeDNaseSeqAlignmentsRep3Helas3.tagAlign.gz . mv ../old/wgEncodeDukeDNaseSeqBaseOverlapSignalHelas3.wig.gz . mv ../old/wgEncodeDukeDNaseSeqSignalHelas3.wig.gz . mv ../old/wgEncodeUncFAIREseqRawDataRep1Helas3.fastq.gz . mv ../old/wgEncodeUncFAIREseqRawDataRep2Helas3.fastq.gz . mv ../old/wgEncodeUncFAIREseqRawDataRep3Helas3.fastq.gz . mv ../old/wgEncodeUncFAIREseqPeaksHelas3.narrowPeak.gz . mv ../old/wgEncodeUncFAIREseqAlignmentsRep1Helas3.tagAlign.gz . mv ../old/wgEncodeUncFAIREseqAlignmentsRep2Helas3.tagAlign.gz . mv ../old/wgEncodeUncFAIREseqAlignmentsRep3Helas3.tagAlign.gz . mv ../old/wgEncodeUncFAIREseqBaseOverlapSignalHelas3.wig.gz . mv ../old/wgEncodeUncFAIREseqSignalHelas3.wig.gz . mv ../old/wgEncodeUtaChIPseqRawDataRep1Hepg2Ctcf.fastq.gz . mv ../old/wgEncodeUtaChIPseqRawDataRep2Hepg2Ctcf.fastq.gz . mv ../old/wgEncodeUtaChIPseqPeaksHepg2Ctcf.narrowPeak.gz . mv ../old/wgEncodeUtaChIPseqAlignmentsRep1Hepg2Ctcf.tagAlign.gz . mv ../old/wgEncodeUtaChIPseqAlignmentsRep2Hepg2Ctcf.tagAlign.gz . mv ../old/wgEncodeUtaChIPseqBaseOverlapSignalHepg2Ctcf.wig.gz . mv ../old/wgEncodeUtaChIPseqSignalHepg2Ctcf.wig.gz . ln ../wgEncodeUtaustinChIPseqRawDataHepg2Input.fastq.gz . ln ../wgEncodeUtaustinChIPseqAlignmentsHepg2Input.tagAlign.gz . ln ../wgEncodeUtaustinChIPseqSignalHepg2Input.wig.gz . mv ../old/wgEncodeUtaChIPseqRawDataRep1Hepg2Cmyc.fastq.gz . mv ../old/wgEncodeUtaChIPseqRawDataRep2Hepg2Cmyc.fastq.gz . mv ../old/wgEncodeUtaChIPseqRawDataRep3Hepg2Cmyc.fastq.gz . mv ../old/wgEncodeUtaChIPseqPeaksHepg2Cmyc.narrowPeak.gz . mv ../old/wgEncodeUtaChIPseqAlignmentsRep1Hepg2Cmyc.tagAlign.gz . mv ../old/wgEncodeUtaChIPseqAlignmentsRep2Hepg2Cmyc.tagAlign.gz . mv ../old/wgEncodeUtaChIPseqAlignmentsRep3Hepg2Cmyc.tagAlign.gz . mv ../old/wgEncodeUtaChIPseqBaseOverlapSignalHepg2Cmyc.wig.gz . mv ../old/wgEncodeUtaChIPseqSignalHepg2Cmyc.wig.gz . mv ../old/wgEncodeDukeDNaseSeqRawDataRep1Hepg2.fastq.gz . mv ../old/wgEncodeDukeDNaseSeqRawDataRep2Hepg2.fastq.gz . mv ../old/wgEncodeDukeDNaseSeqRawDataRep3Hepg2.fastq.gz . mv ../old/wgEncodeDukeDNaseSeqPeaksHepg2.narrowPeak.gz . mv ../old/wgEncodeDukeDNaseSeqAlignmentsRep1Hepg2.tagAlign.gz . mv ../old/wgEncodeDukeDNaseSeqAlignmentsRep2Hepg2.tagAlign.gz . mv ../old/wgEncodeDukeDNaseSeqAlignmentsRep3Hepg2.tagAlign.gz . mv ../old/wgEncodeDukeDNaseSeqBaseOverlapSignalHepg2.wig.gz . mv ../old/wgEncodeDukeDNaseSeqSignalHepg2.wig.gz . mv ../old/wgEncodeUncFAIREseqRawDataRep1Hepg2.fastq.gz . mv ../old/wgEncodeUncFAIREseqRawDataRep2Hepg2.fastq.gz . mv ../old/wgEncodeUncFAIREseqRawDataRep3Hepg2.fastq.gz . mv ../old/wgEncodeUncFAIREseqPeaksHepg2.narrowPeak.gz . mv ../old/wgEncodeUncFAIREseqAlignmentsRep1Hepg2.tagAlign.gz . mv ../old/wgEncodeUncFAIREseqAlignmentsRep2Hepg2.tagAlign.gz . mv ../old/wgEncodeUncFAIREseqAlignmentsRep3Hepg2.tagAlign.gz . mv ../old/wgEncodeUncFAIREseqBaseOverlapSignalHepg2.wig.gz . mv ../old/wgEncodeUncFAIREseqSignalHepg2.wig.gz . mv ../old/wgEncodeUtaChIPseqRawDataRep1K562Ctcf.fastq.gz . mv ../old/wgEncodeUtaChIPseqRawDataRep2K562Ctcf.fastq.gz . mv ../old/wgEncodeUtaChIPseqRawDataRep3K562Ctcf.fastq.gz . mv ../old/wgEncodeUtaChIPseqPeaksK562Ctcf.narrowPeak.gz . mv ../old/wgEncodeUtaChIPseqAlignmentsRep1K562Ctcf.tagAlign.gz . mv ../old/wgEncodeUtaChIPseqAlignmentsRep2K562Ctcf.tagAlign.gz . mv ../old/wgEncodeUtaChIPseqAlignmentsRep3K562Ctcf.tagAlign.gz . mv ../old/wgEncodeUtaChIPseqBaseOverlapSignalK562Ctcf.wig.gz . mv ../old/wgEncodeUtaChIPseqSignalK562Ctcf.wig.gz . ln ../wgEncodeUtaustinChIPseqRawDataK562Input.fastq.gz . ln ../wgEncodeUtaustinChIPseqAlignmentsK562Input.tagAlign.gz . ln ../wgEncodeUtaustinChIPseqSignalK562Input.wig.gz . mv ../old/wgEncodeUtaChIPseqRawDataRep1K562Cmyc.fastq.gz . mv ../old/wgEncodeUtaChIPseqRawDataRep2K562Cmyc.fastq.gz . mv ../old/wgEncodeUtaChIPseqRawDataRep3K562Cmyc.fastq.gz . mv ../old/wgEncodeUtaChIPseqPeaksK562Cmyc.narrowPeak.gz . mv ../old/wgEncodeUtaChIPseqAlignmentsRep1K562Cmyc.tagAlign.gz . mv ../old/wgEncodeUtaChIPseqAlignmentsRep2K562Cmyc.tagAlign.gz . mv ../old/wgEncodeUtaChIPseqAlignmentsRep3K562Cmyc.tagAlign.gz . mv ../old/wgEncodeUtaChIPseqBaseOverlapSignalK562Cmyc.wig.gz . mv ../old/wgEncodeUtaChIPseqSignalK562Cmyc.wig.gz . mv ../old/wgEncodeDukeDNaseSeqRawDataRep1K562.fastq.gz . mv ../old/wgEncodeDukeDNaseSeqRawDataRep2K562.fastq.gz . mv ../old/wgEncodeDukeDNaseSeqRawDataRep3K562.fastq.gz . mv ../old/wgEncodeDukeDNaseSeqPeaksK562.narrowPeak.gz . mv ../old/wgEncodeDukeDNaseSeqAlignmentsRep1K562.tagAlign.gz . mv ../old/wgEncodeDukeDNaseSeqAlignmentsRep2K562.tagAlign.gz . mv ../old/wgEncodeDukeDNaseSeqAlignmentsRep3K562.tagAlign.gz . mv ../old/wgEncodeDukeDNaseSeqBaseOverlapSignalK562.wig.gz . mv ../old/wgEncodeDukeDNaseSeqSignalK562.wig.gz . mv ../old/wgEncodeUncFAIREseqRawDataRep1K562.fastq.gz . mv ../old/wgEncodeUncFAIREseqRawDataRep2K562.fastq.gz . mv ../old/wgEncodeUncFAIREseqRawDataRep3K562.fastq.gz . mv ../old/wgEncodeUncFAIREseqPeaksK562.narrowPeak.gz . mv ../old/wgEncodeUncFAIREseqAlignmentsRep1K562.tagAlign.gz . mv ../old/wgEncodeUncFAIREseqAlignmentsRep2K562.tagAlign.gz . mv ../old/wgEncodeUncFAIREseqAlignmentsRep3K562.tagAlign.gz . mv ../old/wgEncodeUncFAIREseqBaseOverlapSignalK562.wig.gz . mv ../old/wgEncodeUncFAIREseqSignalK562.wig.gz . ### Now move in all of the newly submitted files cd .. mv -i ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqAlignmentsRep1Gm12891.tagAlign.gz . mv -i ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqAlignmentsRep1Gm12892.tagAlign.gz . mv -i ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqAlignmentsRep1Gm19238.tagAlign.gz . mv -i ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqAlignmentsRep1Gm19239.tagAlign.gz . mv -i ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqAlignmentsRep1Gm19240.tagAlign.gz . mv -i ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqAlignmentsRep1H1hesc.tagAlign.gz . mv -i ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqAlignmentsRep2Gm12891.tagAlign.gz . mv -i ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqAlignmentsRep2Gm12892.tagAlign.gz . mv -i ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqAlignmentsRep2Gm19238.tagAlign.gz . mv -i ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqAlignmentsRep2Gm19239.tagAlign.gz . mv -i ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqAlignmentsRep2Gm19240.tagAlign.gz . mv -i ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqAlignmentsRep2H1hesc.tagAlign.gz . mv -i ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqBaseOverlapSignalH1hesc.wig.gz . mv -i ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqBaseOverlapSignalRep1Gm12891.wig.gz . mv -i ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqBaseOverlapSignalRep1Gm12892.wig.gz . mv -i ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqBaseOverlapSignalRep1Gm19238.wig.gz . mv -i ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqBaseOverlapSignalRep1Gm19239.wig.gz . mv -i ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqBaseOverlapSignalRep1Gm19240.wig.gz . mv -i ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqPeaksH1hesc.narrowPeak.gz . mv -i ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqPeaksRep1Gm12891.narrowPeak.gz . mv -i ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqPeaksRep1Gm12892.narrowPeak.gz . mv -i ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqPeaksRep1Gm19238.narrowPeak.gz . mv -i ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqPeaksRep1Gm19239.narrowPeak.gz . mv -i ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqPeaksRep1Gm19240.narrowPeak.gz . mv -i ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqRawDataRep1Gm12891.fastq.gz . mv -i ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqRawDataRep1Gm12892.fastq.gz . mv -i ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqRawDataRep1Gm19238.fastq.gz . mv -i ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqRawDataRep1Gm19239.fastq.gz . mv -i ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqRawDataRep1Gm19240.fastq.gz . mv -i ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqRawDataRep1H1hesc.fastq.gz . mv -i ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqRawDataRep2Gm12891.fastq.gz . mv -i ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqRawDataRep2Gm12892.fastq.gz . mv -i ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqRawDataRep2Gm19238.fastq.gz . mv -i ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqRawDataRep2Gm19239.fastq.gz . mv -i ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqRawDataRep2Gm19240.fastq.gz . mv -i ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqRawDataRep2H1hesc.fastq.gz . mv -i ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqSignalH1hesc.wig.gz . mv -i ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqSignalRep1Gm12891.wig.gz . mv -i ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqSignalRep1Gm12892.wig.gz . mv -i ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqSignalRep1Gm19238.wig.gz . mv -i ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqSignalRep1Gm19239.wig.gz . mv -i ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqSignalRep1Gm19240.wig.gz . mv -i ../wgEncodeUncFAIREseq/wgEncodeUncFAIREseqAlignmentsRep1H1hesc.tagAlign.gz . mv -i ../wgEncodeUncFAIREseq/wgEncodeUncFAIREseqAlignmentsRep1Helas3V2.tagAlign.gz . y mv -i ../wgEncodeUncFAIREseq/wgEncodeUncFAIREseqAlignmentsRep1K562V2.tagAlign.gz . y mv -i ../wgEncodeUncFAIREseq/wgEncodeUncFAIREseqAlignmentsRep1Nhek.tagAlign.gz . mv -i ../wgEncodeUncFAIREseq/wgEncodeUncFAIREseqAlignmentsRep2H1hesc.tagAlign.gz . mv -i ../wgEncodeUncFAIREseq/wgEncodeUncFAIREseqAlignmentsRep2Helas3V2.tagAlign.gz . y mv -i ../wgEncodeUncFAIREseq/wgEncodeUncFAIREseqAlignmentsRep2K562V2.tagAlign.gz . mv -i ../wgEncodeUncFAIREseq/wgEncodeUncFAIREseqAlignmentsRep2Nhek.tagAlign.gz . mv -i ../wgEncodeUncFAIREseq/wgEncodeUncFAIREseqBaseOverlapSignalH1hesc.wig.gz . mv -i ../wgEncodeUncFAIREseq/wgEncodeUncFAIREseqBaseOverlapSignalRep1Helas3V2.wig.gz . mv -i ../wgEncodeUncFAIREseq/wgEncodeUncFAIREseqBaseOverlapSignalRep1K562V2.wig.gz . mv -i ../wgEncodeUncFAIREseq/wgEncodeUncFAIREseqBaseOverlapSignalRep1Nhek.wig.gz . mv -i ../wgEncodeUncFAIREseq/wgEncodeUncFAIREseqPeaksH1hesc.narrowPeak.gz . mv -i ../wgEncodeUncFAIREseq/wgEncodeUncFAIREseqPeaksRep1Helas3V2.narrowPeak.gz . mv -i ../wgEncodeUncFAIREseq/wgEncodeUncFAIREseqPeaksRep1K562V2.narrowPeak.gz . mv -i ../wgEncodeUncFAIREseq/wgEncodeUncFAIREseqPeaksRep1Nhek.narrowPeak.gz . mv -i ../wgEncodeUncFAIREseq/wgEncodeUncFAIREseqRawDataRep1H1hesc.fastq.gz . mv -i ../wgEncodeUncFAIREseq/wgEncodeUncFAIREseqRawDataRep1Helas3V2.fastq.gz . mv -i ../wgEncodeUncFAIREseq/wgEncodeUncFAIREseqRawDataRep1K562V2.fastq.gz . mv -i ../wgEncodeUncFAIREseq/wgEncodeUncFAIREseqRawDataRep1Nhek.fastq.gz . mv -i ../wgEncodeUncFAIREseq/wgEncodeUncFAIREseqRawDataRep2H1hesc.fastq.gz . mv -i ../wgEncodeUncFAIREseq/wgEncodeUncFAIREseqRawDataRep2Helas3V2.fastq.gz . y mv -i ../wgEncodeUncFAIREseq/wgEncodeUncFAIREseqRawDataRep2K562V2.fastq.gz . mv -i ../wgEncodeUncFAIREseq/wgEncodeUncFAIREseqRawDataRep2Nhek.fastq.gz . mv -i ../wgEncodeUncFAIREseq/wgEncodeUncFAIREseqSignalH1hesc.wig.gz . mv -i ../wgEncodeUncFAIREseq/wgEncodeUncFAIREseqSignalRep1Helas3V2.wig.gz . mv -i ../wgEncodeUncFAIREseq/wgEncodeUncFAIREseqSignalRep1K562V2.wig.gz . mv -i ../wgEncodeUncFAIREseq/wgEncodeUncFAIREseqSignalRep1Nhek.wig.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqAlignmentsH1hescCtcf.tagAlign.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqAlignmentsH1hescPol2.tagAlign.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqAlignmentsHuvecCmyc.tagAlign.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqAlignmentsRep1Gm12891Ctcf.tagAlign.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqAlignmentsRep1Gm12892Ctcf.tagAlign.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqAlignmentsRep1Gm19238Ctcf.tagAlign.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqAlignmentsRep1Gm19239Ctcf.tagAlign.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqAlignmentsRep1Gm19240Ctcf.tagAlign.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqAlignmentsRep1Helas3CmycV2.tagAlign.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqAlignmentsRep1NhekCtcf.tagAlign.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqAlignmentsRep2Gm12891Ctcf.tagAlign.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqAlignmentsRep2Gm12892Ctcf.tagAlign.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqAlignmentsRep2Gm19238Ctcf.tagAlign.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqAlignmentsRep2Gm19239Ctcf.tagAlign.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqAlignmentsRep2Gm19240Ctcf.tagAlign.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqAlignmentsRep2Helas3CmycV2.tagAlign.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqAlignmentsRep2NhekCtcf.tagAlign.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqBaseOverlapSignalH1hescCtcf.wig.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqBaseOverlapSignalH1hescPol2.wig.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqBaseOverlapSignalHuvecCmyc.wig.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqBaseOverlapSignalNhekCtcf.wig.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqBaseOverlapSignalRep1Gm12891Ctcf.wig.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqBaseOverlapSignalRep1Gm12892Ctcf.wig.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqBaseOverlapSignalRep1Gm19238Ctcf.wig.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqBaseOverlapSignalRep1Gm19239Ctcf.wig.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqBaseOverlapSignalRep1Gm19240Ctcf.wig.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqBaseOverlapSignalRep1Helas3CmycV2.wig.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqPeaksH1hescCtcf.narrowPeak.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqPeaksH1hescPol2.narrowPeak.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqPeaksHuvecCmyc.narrowPeak.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqPeaksNhekCtcf.narrowPeak.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqPeaksRep1Gm12891Ctcf.narrowPeak.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqPeaksRep1Gm12892Ctcf.narrowPeak.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqPeaksRep1Gm19238Ctcf.narrowPeak.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqPeaksRep1Gm19239Ctcf.narrowPeak.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqPeaksRep1Gm19240Ctcf.narrowPeak.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqPeaksRep1Helas3CmycV2.narrowPeak.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqRawDataH1hescCtcf.fastq.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqRawDataH1hescPol2.fastq.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqRawDataHuvecCmyc.fastq.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqRawDataRep1Gm12891Ctcf.fastq.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqRawDataRep1Gm12892Ctcf.fastq.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqRawDataRep1Gm19238Ctcf.fastq.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqRawDataRep1Gm19239Ctcf.fastq.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqRawDataRep1Gm19240Ctcf.fastq.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqRawDataRep1Helas3CmycV2.fastq.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqRawDataRep1NhekCtcf.fastq.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqRawDataRep2Gm12891Ctcf.fastq.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqRawDataRep2Gm12892Ctcf.fastq.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqRawDataRep2Gm19238Ctcf.fastq.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqRawDataRep2Gm19239Ctcf.fastq.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqRawDataRep2Gm19240Ctcf.fastq.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqRawDataRep2Helas3CmycV2.fastq.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqRawDataRep2NhekCtcf.fastq.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqSignalH1hescCtcf.wig.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqSignalH1hescPol2.wig.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqSignalHuvecCmyc.wig.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqSignalNhekCtcf.wig.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqSignalRep1Gm12891Ctcf.wig.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqSignalRep1Gm12892Ctcf.wig.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqSignalRep1Gm19238Ctcf.wig.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqSignalRep1Gm19239Ctcf.wig.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqSignalRep1Gm19240Ctcf.wig.gz . mv -i ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqSignalRep1Helas3CmycV2.wig.gz . ### Next, get the download only file metadata set properly rm tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/544/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/545/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/546/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/548/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/552/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/555/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/556/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/557/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/589/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/588/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/593/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/594/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/624/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/628/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/629/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/630/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/635/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/636/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/638/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/639/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/640/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/641/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/642/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/643/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/644/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/645/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/646/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/647/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/648/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/650/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/649/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/651/out/fileDb.ra | grep parentTable >> tmp.txt # edit tmp.txt cp fileDb.ra fileDb.ra.2009-10-12 cat tmp.txt >> fileDb.ra encodeDownloadsPage.pl index.html # fix some problems # 1) noticed 649 and 651 had been left off the list # 2) superceding actions left behind files when names did not conflict! mkdir superceded # Resubmit V2 with (Rep1 in name!) mv wgEncodeUncFAIREseqBaseOverlapSignalHelas3V2.wig.gz superceded/ mv wgEncodeUncFAIREseqSignalHelas3V2.wig.gz superceded/ # Submit V2, but V1 was not released yet mv wgEncodeUtaChIPseqBaseOverlapSignalHelas3Cmyc.wig.gz superceded/ mv wgEncodeUtaChIPseqPeaksHelas3Cmyc.narrowPeak.gz superceded/ mv wgEncodeUtaChIPseqSignalHelas3Cmyc.wig.gz superceded/ # Resubmit V2 with (Rep1 in name!) mv wgEncodeUncFAIREseqBaseOverlapSignalK562V2.wig.gz superceded/ mv wgEncodeUncFAIREseqSignalK562V2.wig.gz superceded/ /cluster/data/encode/pipeline/bin/encodeStatus.pl 544 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 545 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 546 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 548 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 552 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 555 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 556 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 557 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 589 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 588 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 593 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 594 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 624 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 628 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 629 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 630 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 635 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 636 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 638 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 639 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 640 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 641 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 642 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 643 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 644 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 645 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 646 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 647 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 648 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 649 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 650 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 651 displayed 2009-10-14 One more =================== rm tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/686/out/fileDb.ra | grep parentTable >> tmp.txt edit tmp.txt cp fileDb.ra fileDb.ra.2009-10-14 cat tmp.txt >> fileDb..ra encodeDownloadsPage.pl index.html /cluster/data/encode/pipeline/bin/encodeStatus.pl 686 displayed 2009-10-23 Get ready for release 2 ================================== # edit wgEncodeChromatinMap.html to add release notes provided by Terry Furey # edit metadata in trackDb to give version reasons #Filter ranges: select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeDukeDNaseSeqPeaksGm12878 ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeDukeDNaseSeqPeaksGm12878V2 ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeDukeDNaseSeqPeaksH1hesc ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeDukeDNaseSeqPeaksHelas3 ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeDukeDNaseSeqPeaksHelas3V2 ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeDukeDNaseSeqPeaksHepg2 ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeDukeDNaseSeqPeaksHepg2V2 ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeDukeDNaseSeqPeaksHuvec ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeDukeDNaseSeqPeaksK562 ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeDukeDNaseSeqPeaksK562V2 ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeDukeDNaseSeqPeaksNhek ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeDukeDNaseSeqPeaksRep1Gm12891 ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeDukeDNaseSeqPeaksRep1Gm12892 ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeDukeDNaseSeqPeaksRep1Gm19238 ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeDukeDNaseSeqPeaksRep1Gm19239 ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeDukeDNaseSeqPeaksRep1Gm19240 ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeUtaChIPseqPeaksGm12878Cmyc ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeUtaChIPseqPeaksGm12878Ctcf ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeUtaChIPseqPeaksGm12878CtcfV2 ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeUtaChIPseqPeaksH1hescCtcf ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeUtaChIPseqPeaksH1hescPol2 ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeUtaChIPseqPeaksHelas3Cmyc ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeUtaChIPseqPeaksHelas3Ctcf ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeUtaChIPseqPeaksHelas3CtcfV2 ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeUtaChIPseqPeaksHepg2Cmyc ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeUtaChIPseqPeaksHepg2CmycV2 ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeUtaChIPseqPeaksHepg2Ctcf ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeUtaChIPseqPeaksHepg2CtcfV2 ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeUtaChIPseqPeaksHepg2Pol2 ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeUtaChIPseqPeaksHuvecCmyc ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeUtaChIPseqPeaksHuvecCtcf ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeUtaChIPseqPeaksHuvecPol2 ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeUtaChIPseqPeaksK562Cmyc ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeUtaChIPseqPeaksK562CmycV2 ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeUtaChIPseqPeaksK562Ctcf ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeUtaChIPseqPeaksK562CtcfV2 ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeUtaChIPseqPeaksK562Pol2 ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeUtaChIPseqPeaksNhekCtcf ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeUtaChIPseqPeaksRep1Gm12891Ctcf ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeUtaChIPseqPeaksRep1Gm12892Ctcf ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeUtaChIPseqPeaksRep1Gm19238Ctcf ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeUtaChIPseqPeaksRep1Gm19239Ctcf ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeUtaChIPseqPeaksRep1Gm19240Ctcf ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeUtaChIPseqPeaksRep1Helas3CmycV2; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeUncFAIREseqPeaksGm12878 ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeUncFAIREseqPeaksGm12878V2 ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeUncFAIREseqPeaksH1hesc ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeUncFAIREseqPeaksHelas3 ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeUncFAIREseqPeaksHelas3V2 ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeUncFAIREseqPeaksHepg2 ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeUncFAIREseqPeaksHepg2V2 ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeUncFAIREseqPeaksHuvec ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeUncFAIREseqPeaksK562 ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeUncFAIREseqPeaksK562V2 ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeUncFAIREseqPeaksPanislets ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeUncFAIREseqPeaksRep1Helas3V2; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeUncFAIREseqPeaksRep1K562V2 ; select min(score),max(score),min(signalValue),max(signalValue),min(pValue),max(pValue),min(qValue),max(qValue) from wgEncodeUncFAIREseqPeaksRep1Nhek ; # Result score 100:1000, signalValue 0:16 (but too variable to be useful) pValue 0:100, qValue -1:-1 # thus don't change filterBy settings in trackDb # check in trackDb.wgEncode.ra, wgEncodeChomatinMap.html make alpha DBS=hg18 # updating versioning info in downloads index.html cd {downlodsDir} cp fileDb.ra fileDb.ra.2009-10-23 grep parent fileDb.tmp.ra | sort | uniq > fileDb.ra grep V2 fileDb.ra | sort | uniq > fileV2.ra grep -v V2 fileDb.ra | sort | uniq > fileNV2.ra # edit fileV2.ra # do some massaging for duplicate lines or missing data cp fileNV2.ra fileDb.ra cat fileV2.ra >> fileDb.ra encodeDownloadsPage.pl index.html # something missing grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/686/out/fileDb.ra | grep parentTable >> tmp.txt cat tmp.txt >> fileDb.ra sort < fileDb.ra > fileDbS.ra rm fileDb.ra mv fileDbS.ra fileDb.ra encodeDownloadsPage.pl index.html # Duplicates: versioned files with originals still in live dir (no no) ls wgEncodeUtaChIPseqRawDataRep1Helas3Cmyc.fastq.gz ls wgEncodeUtaChIPseqRawDataRep2Helas3Cmyc.fastq.gz ls wgEncodeUtaChIPseqAlignmentsRep2Helas3Cmyc.tagAlign.gz ls wgEncodeUtaChIPseqAlignmentsRep1Helas3Cmyc.tagAlign.gz ls release1/wgEncodeUtaChIPseqRawDataRep1Helas3Cmyc.fastq.gz ls release1/wgEncodeUtaChIPseqRawDataRep2Helas3Cmyc.fastq.gz ls release1/wgEncodeUtaChIPseqAlignmentsRep2Helas3Cmyc.tagAlign.gz ls release1/wgEncodeUtaChIPseqAlignmentsRep1Helas3Cmyc.tagAlign.gz rm wgEncodeUtaChIPseqRawDataRep1Helas3Cmyc.fastq.gz rm wgEncodeUtaChIPseqRawDataRep2Helas3Cmyc.fastq.gz rm wgEncodeUtaChIPseqAlignmentsRep2Helas3Cmyc.tagAlign.gz rm wgEncodeUtaChIPseqAlignmentsRep1Helas3Cmyc.tagAlign.gz encodeDownloadsPage.pl index.html # edit preamble.html to add release note. encodeDownloadsPage.pl index.html cd {downloadsDir} mkdir release2 cd release2 cp ../index.html . cp ../preamble.html . cp ../fileDb.ra . ls -1 ../*.gz | wl 318 ln ../*.gz . ls -1 *.gz | wl 318 drop table wgEncodeUncFAIREseqPeaksHelas3V2; rename table wgEncodeUncFAIREseqPeaksRep1Helas3V2 to wgEncodeUncFAIREseqPeaksHelas3V2; rename table wgEncodeUncFAIREseqPeaksRep1Nhek to wgEncodeUncFAIREseqPeaksNhek; drop table wgEncodeUncFAIREseqPeaksK562V2; rename table wgEncodeUncFAIREseqPeaksRep1K562V2 to wgEncodeUncFAIREseqPeaksK562V2; ll wgEncodeUncFAIREseqPeaksRep1K562V2.narrowPeak.gz ll wgEncodeUncFAIREseqPeaksRep1Helas3V2.narrowPeak.gz ll wgEncodeUncFAIREseqPeaksRep1Nhek.narrowPeak.gz rm wgEncodeUncFAIREseqPeaksRep1K562V2.narrowPeak.gz rm wgEncodeUncFAIREseqPeaksRep1Helas3V2.narrowPeak.gz rm wgEncodeUncFAIREseqPeaksRep1Nhek.narrowPeak.gz cd .. mv wgEncodeUncFAIREseqPeaksRep1K562V2.narrowPeak.gz wgEncodeUncFAIREseqPeaksK562V2.narrowPeak.gz mv wgEncodeUncFAIREseqPeaksRep1Helas3V2.narrowPeak.gz wgEncodeUncFAIREseqPeaksHelas3V2.narrowPeak.gz mv wgEncodeUncFAIREseqPeaksRep1Nhek.narrowPeak.gz wgEncodeUncFAIREseqPeaksNhek.narrowPeak.gz cd release2/ ln ../wgEncodeUncFAIREseqPeaksK562V2.narrowPeak.gz . ln ../wgEncodeUncFAIREseqPeaksHelas3V2.narrowPeak.gz . ln ../wgEncodeUncFAIREseqPeaksNhek.narrowPeak.gz . ll wgEncodeUncFAIREseqPeaksK562V2.narrowPeak.gz ll wgEncodeUncFAIREseqPeaksHelas3V2.narrowPeak.gz ll wgEncodeUncFAIREseqPeaksNhek.narrowPeak.gz Problem names: | wgEncodeDukeDNaseSeqBaseOverlapSignalRep1Gm12891 | | wgEncodeDukeDNaseSeqBaseOverlapSignalRep1Gm12892 | | wgEncodeDukeDNaseSeqBaseOverlapSignalRep1Gm19238 | | wgEncodeDukeDNaseSeqBaseOverlapSignalRep1Gm19239 | | wgEncodeDukeDNaseSeqBaseOverlapSignalRep1Gm19240 | | wgEncodeDukeDNaseSeqSignalRep1Gm12891 | | wgEncodeDukeDNaseSeqSignalRep1Gm12892 | | wgEncodeDukeDNaseSeqSignalRep1Gm19238 | | wgEncodeDukeDNaseSeqSignalRep1Gm19239 | | wgEncodeDukeDNaseSeqSignalRep1Gm19240 | | wgEncodeUtaChIPseqBaseOverlapSignalRep1Gm12891Ctcf | | wgEncodeUtaChIPseqBaseOverlapSignalRep1Gm12892Ctcf | | wgEncodeUtaChIPseqBaseOverlapSignalRep1Gm19238Ctcf | | wgEncodeUtaChIPseqBaseOverlapSignalRep1Gm19239Ctcf | | wgEncodeUtaChIPseqBaseOverlapSignalRep1Gm19240Ctcf | | wgEncodeUtaChIPseqBaseOverlapSignalRep1Helas3CmycV2 | | wgEncodeUtaChIPseqSignalRep1Gm12891Ctcf | | wgEncodeUtaChIPseqSignalRep1Gm12892Ctcf | | wgEncodeUtaChIPseqSignalRep1Gm19238Ctcf | | wgEncodeUtaChIPseqSignalRep1Gm19239Ctcf | | wgEncodeUtaChIPseqSignalRep1Gm19240Ctcf | | wgEncodeUtaChIPseqSignalRep1Helas3CmycV2 | | wgEncodeUncFAIREseqBaseOverlapSignalRep1Helas3V2 | | wgEncodeUncFAIREseqBaseOverlapSignalRep1K562V2 | | wgEncodeUncFAIREseqBaseOverlapSignalRep1Nhek | | wgEncodeUncFAIREseqSignalRep1Helas3V2 | | wgEncodeUncFAIREseqSignalRep1K562V2 | | wgEncodeUncFAIREseqSignalRep1Nhek | | wgEncodeDukeDNaseSeqPeaksRep1Gm12891 | | wgEncodeDukeDNaseSeqPeaksRep1Gm12892 | | wgEncodeDukeDNaseSeqPeaksRep1Gm19238 | | wgEncodeDukeDNaseSeqPeaksRep1Gm19239 | | wgEncodeDukeDNaseSeqPeaksRep1Gm19240 | | wgEncodeUtaChIPseqPeaksRep1Gm12891Ctcf | | wgEncodeUtaChIPseqPeaksRep1Gm12892Ctcf | | wgEncodeUtaChIPseqPeaksRep1Gm19238Ctcf | | wgEncodeUtaChIPseqPeaksRep1Gm19239Ctcf | | wgEncodeUtaChIPseqPeaksRep1Gm19240Ctcf | | wgEncodeUtaChIPseqPeaksRep1Helas3CmycV2 | rename table wgEncodeDukeDNaseSeqPeaksRep1Gm12891 to wgEncodeDukeDNaseSeqPeaksGm12891; rename table wgEncodeDukeDNaseSeqPeaksRep1Gm12892 to wgEncodeDukeDNaseSeqPeaksGm12892; rename table wgEncodeDukeDNaseSeqPeaksRep1Gm19238 to wgEncodeDukeDNaseSeqPeaksGm19238; rename table wgEncodeDukeDNaseSeqPeaksRep1Gm19239 to wgEncodeDukeDNaseSeqPeaksGm19239; rename table wgEncodeDukeDNaseSeqPeaksRep1Gm19240 to wgEncodeDukeDNaseSeqPeaksGm19240; rename table wgEncodeUtaChIPseqPeaksRep1Gm12891Ctcf to wgEncodeUtaChIPseqPeaksGm12891Ctcf; rename table wgEncodeUtaChIPseqPeaksRep1Gm12892Ctcf to wgEncodeUtaChIPseqPeaksGm12892Ctcf; rename table wgEncodeUtaChIPseqPeaksRep1Gm19238Ctcf to wgEncodeUtaChIPseqPeaksGm19238Ctcf; rename table wgEncodeUtaChIPseqPeaksRep1Gm19239Ctcf to wgEncodeUtaChIPseqPeaksGm19239Ctcf; rename table wgEncodeUtaChIPseqPeaksRep1Gm19240Ctcf to wgEncodeUtaChIPseqPeaksGm19240Ctcf; rename table wgEncodeUtaChIPseqPeaksRep1Helas3CmycV2 to wgEncodeUtaChIPseqPeaksHelas3CmycV2; mv wgEncodeDukeDNaseSeqPeaksRep1Gm12891.narrowPeak.gz wgEncodeDukeDNaseSeqPeaksGm12891.narrowPeak.gz mv wgEncodeDukeDNaseSeqPeaksRep1Gm12892.narrowPeak.gz wgEncodeDukeDNaseSeqPeaksGm12892.narrowPeak.gz mv wgEncodeDukeDNaseSeqPeaksRep1Gm19238.narrowPeak.gz wgEncodeDukeDNaseSeqPeaksGm19238.narrowPeak.gz mv wgEncodeDukeDNaseSeqPeaksRep1Gm19239.narrowPeak.gz wgEncodeDukeDNaseSeqPeaksGm19239.narrowPeak.gz mv wgEncodeDukeDNaseSeqPeaksRep1Gm19240.narrowPeak.gz wgEncodeDukeDNaseSeqPeaksGm19240.narrowPeak.gz mv wgEncodeUtaChIPseqPeaksRep1Gm12891Ctcf.narrowPeak.gz wgEncodeUtaChIPseqPeaksGm12891Ctcf.narrowPeak.gz mv wgEncodeUtaChIPseqPeaksRep1Gm12892Ctcf.narrowPeak.gz wgEncodeUtaChIPseqPeaksGm12892Ctcf.narrowPeak.gz mv wgEncodeUtaChIPseqPeaksRep1Gm19238Ctcf.narrowPeak.gz wgEncodeUtaChIPseqPeaksGm19238Ctcf.narrowPeak.gz mv wgEncodeUtaChIPseqPeaksRep1Gm19239Ctcf.narrowPeak.gz wgEncodeUtaChIPseqPeaksGm19239Ctcf.narrowPeak.gz mv wgEncodeUtaChIPseqPeaksRep1Gm19240Ctcf.narrowPeak.gz wgEncodeUtaChIPseqPeaksGm19240Ctcf.narrowPeak.gz mv wgEncodeUtaChIPseqPeaksRep1Helas3CmycV2.narrowPeak.gz wgEncodeUtaChIPseqPeaksHelas3CmycV2.narrowPeak.gz drop table wgEncodeUncFAIREseqBaseOverlapSignalHelas3V2; rm /gbdb/hg18/wib/wgEncodeUncFAIREseqBaseOverlapSignalHelas3V2.wib drop table wgEncodeUncFAIREseqBaseOverlapSignalK562V2; rm /gbdb/hg18/wib/wgEncodeUncFAIREseqBaseOverlapSignalK562V2.wib drop table wgEncodeUncFAIREseqSignalHelas3V2; rm /gbdb/hg18/wib/wgEncodeUncFAIREseqSignalHelas3V2.wib drop table wgEncodeUncFAIREseqSignalK562V2; rm /gbdb/hg18/wib/wgEncodeUncFAIREseqSignalK562V2.wib rename table wgEncodeDukeDNaseSeqBaseOverlapSignalRep1Gm12891 to wgEncodeDukeDNaseSeqBaseOverlapSignalGm12891 ; rename table wgEncodeDukeDNaseSeqBaseOverlapSignalRep1Gm12892 to wgEncodeDukeDNaseSeqBaseOverlapSignalGm12892 ; rename table wgEncodeDukeDNaseSeqBaseOverlapSignalRep1Gm19238 to wgEncodeDukeDNaseSeqBaseOverlapSignalGm19238 ; rename table wgEncodeDukeDNaseSeqBaseOverlapSignalRep1Gm19239 to wgEncodeDukeDNaseSeqBaseOverlapSignalGm19239 ; rename table wgEncodeDukeDNaseSeqBaseOverlapSignalRep1Gm19240 to wgEncodeDukeDNaseSeqBaseOverlapSignalGm19240 ; rename table wgEncodeDukeDNaseSeqSignalRep1Gm12891 to wgEncodeDukeDNaseSeqSignalGm12891 ; rename table wgEncodeDukeDNaseSeqSignalRep1Gm12892 to wgEncodeDukeDNaseSeqSignalGm12892 ; rename table wgEncodeDukeDNaseSeqSignalRep1Gm19238 to wgEncodeDukeDNaseSeqSignalGm19238 ; rename table wgEncodeDukeDNaseSeqSignalRep1Gm19239 to wgEncodeDukeDNaseSeqSignalGm19239 ; rename table wgEncodeDukeDNaseSeqSignalRep1Gm19240 to wgEncodeDukeDNaseSeqSignalGm19240 ; rename table wgEncodeUtaChIPseqBaseOverlapSignalRep1Gm12891Ctcf to wgEncodeUtaChIPseqBaseOverlapSignalGm12891Ctcf ; rename table wgEncodeUtaChIPseqBaseOverlapSignalRep1Gm12892Ctcf to wgEncodeUtaChIPseqBaseOverlapSignalGm12892Ctcf ; rename table wgEncodeUtaChIPseqBaseOverlapSignalRep1Gm19238Ctcf to wgEncodeUtaChIPseqBaseOverlapSignalGm19238Ctcf ; rename table wgEncodeUtaChIPseqBaseOverlapSignalRep1Gm19239Ctcf to wgEncodeUtaChIPseqBaseOverlapSignalGm19239Ctcf ; rename table wgEncodeUtaChIPseqBaseOverlapSignalRep1Gm19240Ctcf to wgEncodeUtaChIPseqBaseOverlapSignalGm19240Ctcf ; rename table wgEncodeUtaChIPseqBaseOverlapSignalRep1Helas3CmycV2 to wgEncodeUtaChIPseqBaseOverlapSignalHelas3CmycV2; rename table wgEncodeUtaChIPseqSignalRep1Gm12891Ctcf to wgEncodeUtaChIPseqSignalGm12891Ctcf ; rename table wgEncodeUtaChIPseqSignalRep1Gm12892Ctcf to wgEncodeUtaChIPseqSignalGm12892Ctcf ; rename table wgEncodeUtaChIPseqSignalRep1Gm19238Ctcf to wgEncodeUtaChIPseqSignalGm19238Ctcf ; rename table wgEncodeUtaChIPseqSignalRep1Gm19239Ctcf to wgEncodeUtaChIPseqSignalGm19239Ctcf ; rename table wgEncodeUtaChIPseqSignalRep1Gm19240Ctcf to wgEncodeUtaChIPseqSignalGm19240Ctcf ; rename table wgEncodeUtaChIPseqSignalRep1Helas3CmycV2 to wgEncodeUtaChIPseqSignalHelas3CmycV2 ; rename table wgEncodeUncFAIREseqBaseOverlapSignalRep1Helas3V2 to wgEncodeUncFAIREseqBaseOverlapSignalHelas3V2 ; rename table wgEncodeUncFAIREseqBaseOverlapSignalRep1K562V2 to wgEncodeUncFAIREseqBaseOverlapSignalK562V2 ; rename table wgEncodeUncFAIREseqBaseOverlapSignalRep1Nhek to wgEncodeUncFAIREseqBaseOverlapSignalNhek ; rename table wgEncodeUncFAIREseqSignalRep1Helas3V2 to wgEncodeUncFAIREseqSignalHelas3V2 ; rename table wgEncodeUncFAIREseqSignalRep1K562V2 to wgEncodeUncFAIREseqSignalK562V2 ; rename table wgEncodeUncFAIREseqSignalRep1Nhek to wgEncodeUncFAIREseqSignalNhek ; cd {dowloadsDir} mv wgEncodeDukeDNaseSeqBaseOverlapSignalRep1Gm12891.wig.gz wgEncodeDukeDNaseSeqBaseOverlapSignalGm12891.wig.gz mv wgEncodeDukeDNaseSeqBaseOverlapSignalRep1Gm12892.wig.gz wgEncodeDukeDNaseSeqBaseOverlapSignalGm12892.wig.gz mv wgEncodeDukeDNaseSeqBaseOverlapSignalRep1Gm19238.wig.gz wgEncodeDukeDNaseSeqBaseOverlapSignalGm19238.wig.gz mv wgEncodeDukeDNaseSeqBaseOverlapSignalRep1Gm19239.wig.gz wgEncodeDukeDNaseSeqBaseOverlapSignalGm19239.wig.gz mv wgEncodeDukeDNaseSeqBaseOverlapSignalRep1Gm19240.wig.gz wgEncodeDukeDNaseSeqBaseOverlapSignalGm19240.wig.gz mv wgEncodeDukeDNaseSeqSignalRep1Gm12891.wig.gz wgEncodeDukeDNaseSeqSignalGm12891.wig.gz mv wgEncodeDukeDNaseSeqSignalRep1Gm12892.wig.gz wgEncodeDukeDNaseSeqSignalGm12892.wig.gz mv wgEncodeDukeDNaseSeqSignalRep1Gm19238.wig.gz wgEncodeDukeDNaseSeqSignalGm19238.wig.gz mv wgEncodeDukeDNaseSeqSignalRep1Gm19239.wig.gz wgEncodeDukeDNaseSeqSignalGm19239.wig.gz mv wgEncodeDukeDNaseSeqSignalRep1Gm19240.wig.gz wgEncodeDukeDNaseSeqSignalGm19240.wig.gz mv wgEncodeUtaChIPseqBaseOverlapSignalRep1Gm12891Ctcf.wig.gz wgEncodeUtaChIPseqBaseOverlapSignalGm12891Ctcf.wig.gz mv wgEncodeUtaChIPseqBaseOverlapSignalRep1Gm12892Ctcf.wig.gz wgEncodeUtaChIPseqBaseOverlapSignalGm12892Ctcf.wig.gz mv wgEncodeUtaChIPseqBaseOverlapSignalRep1Gm19238Ctcf.wig.gz wgEncodeUtaChIPseqBaseOverlapSignalGm19238Ctcf.wig.gz mv wgEncodeUtaChIPseqBaseOverlapSignalRep1Gm19239Ctcf.wig.gz wgEncodeUtaChIPseqBaseOverlapSignalGm19239Ctcf.wig.gz mv wgEncodeUtaChIPseqBaseOverlapSignalRep1Gm19240Ctcf.wig.gz wgEncodeUtaChIPseqBaseOverlapSignalGm19240Ctcf.wig.gz mv wgEncodeUtaChIPseqBaseOverlapSignalRep1Helas3CmycV2.wig.gz wgEncodeUtaChIPseqBaseOverlapSignalHelas3CmycV2.wig.gz mv wgEncodeUtaChIPseqSignalRep1Gm12891Ctcf.wig.gz wgEncodeUtaChIPseqSignalGm12891Ctcf.wig.gz mv wgEncodeUtaChIPseqSignalRep1Gm12892Ctcf.wig.gz wgEncodeUtaChIPseqSignalGm12892Ctcf.wig.gz mv wgEncodeUtaChIPseqSignalRep1Gm19238Ctcf.wig.gz wgEncodeUtaChIPseqSignalGm19238Ctcf.wig.gz mv wgEncodeUtaChIPseqSignalRep1Gm19239Ctcf.wig.gz wgEncodeUtaChIPseqSignalGm19239Ctcf.wig.gz mv wgEncodeUtaChIPseqSignalRep1Gm19240Ctcf.wig.gz wgEncodeUtaChIPseqSignalGm19240Ctcf.wig.gz mv wgEncodeUtaChIPseqSignalRep1Helas3CmycV2.wig.gz wgEncodeUtaChIPseqSignalHelas3CmycV2.wig.gz mv wgEncodeUncFAIREseqBaseOverlapSignalRep1Helas3V2.wig.gz wgEncodeUncFAIREseqBaseOverlapSignalHelas3V2.wig.gz mv wgEncodeUncFAIREseqBaseOverlapSignalRep1K562V2.wig.gz wgEncodeUncFAIREseqBaseOverlapSignalK562V2.wig.gz mv wgEncodeUncFAIREseqBaseOverlapSignalRep1Nhek.wig.gz wgEncodeUncFAIREseqBaseOverlapSignalNhek.wig.gz mv wgEncodeUncFAIREseqSignalRep1Helas3V2.wig.gz wgEncodeUncFAIREseqSignalHelas3V2.wig.gz mv wgEncodeUncFAIREseqSignalRep1K562V2.wig.gz wgEncodeUncFAIREseqSignalK562V2.wig.gz mv wgEncodeUncFAIREseqSignalRep1Nhek.wig.gz wgEncodeUncFAIREseqSignalNhek.wig.gz cd release2/ mv wgEncodeDukeDNaseSeqBaseOverlapSignalRep1Gm12891.wig.gz wgEncodeDukeDNaseSeqBaseOverlapSignalGm12891.wig.gz mv wgEncodeDukeDNaseSeqBaseOverlapSignalRep1Gm12892.wig.gz wgEncodeDukeDNaseSeqBaseOverlapSignalGm12892.wig.gz mv wgEncodeDukeDNaseSeqBaseOverlapSignalRep1Gm19238.wig.gz wgEncodeDukeDNaseSeqBaseOverlapSignalGm19238.wig.gz mv wgEncodeDukeDNaseSeqBaseOverlapSignalRep1Gm19239.wig.gz wgEncodeDukeDNaseSeqBaseOverlapSignalGm19239.wig.gz mv wgEncodeDukeDNaseSeqBaseOverlapSignalRep1Gm19240.wig.gz wgEncodeDukeDNaseSeqBaseOverlapSignalGm19240.wig.gz mv wgEncodeDukeDNaseSeqSignalRep1Gm12891.wig.gz wgEncodeDukeDNaseSeqSignalGm12891.wig.gz mv wgEncodeDukeDNaseSeqSignalRep1Gm12892.wig.gz wgEncodeDukeDNaseSeqSignalGm12892.wig.gz mv wgEncodeDukeDNaseSeqSignalRep1Gm19238.wig.gz wgEncodeDukeDNaseSeqSignalGm19238.wig.gz mv wgEncodeDukeDNaseSeqSignalRep1Gm19239.wig.gz wgEncodeDukeDNaseSeqSignalGm19239.wig.gz mv wgEncodeDukeDNaseSeqSignalRep1Gm19240.wig.gz wgEncodeDukeDNaseSeqSignalGm19240.wig.gz mv wgEncodeUtaChIPseqBaseOverlapSignalRep1Gm12891Ctcf.wig.gz wgEncodeUtaChIPseqBaseOverlapSignalGm12891Ctcf.wig.gz mv wgEncodeUtaChIPseqBaseOverlapSignalRep1Gm12892Ctcf.wig.gz wgEncodeUtaChIPseqBaseOverlapSignalGm12892Ctcf.wig.gz mv wgEncodeUtaChIPseqBaseOverlapSignalRep1Gm19238Ctcf.wig.gz wgEncodeUtaChIPseqBaseOverlapSignalGm19238Ctcf.wig.gz mv wgEncodeUtaChIPseqBaseOverlapSignalRep1Gm19239Ctcf.wig.gz wgEncodeUtaChIPseqBaseOverlapSignalGm19239Ctcf.wig.gz mv wgEncodeUtaChIPseqBaseOverlapSignalRep1Gm19240Ctcf.wig.gz wgEncodeUtaChIPseqBaseOverlapSignalGm19240Ctcf.wig.gz mv wgEncodeUtaChIPseqBaseOverlapSignalRep1Helas3CmycV2.wig.gz wgEncodeUtaChIPseqBaseOverlapSignalHelas3CmycV2.wig.gz mv wgEncodeUtaChIPseqSignalRep1Gm12891Ctcf.wig.gz wgEncodeUtaChIPseqSignalGm12891Ctcf.wig.gz mv wgEncodeUtaChIPseqSignalRep1Gm12892Ctcf.wig.gz wgEncodeUtaChIPseqSignalGm12892Ctcf.wig.gz mv wgEncodeUtaChIPseqSignalRep1Gm19238Ctcf.wig.gz wgEncodeUtaChIPseqSignalGm19238Ctcf.wig.gz mv wgEncodeUtaChIPseqSignalRep1Gm19239Ctcf.wig.gz wgEncodeUtaChIPseqSignalGm19239Ctcf.wig.gz mv wgEncodeUtaChIPseqSignalRep1Gm19240Ctcf.wig.gz wgEncodeUtaChIPseqSignalGm19240Ctcf.wig.gz mv wgEncodeUtaChIPseqSignalRep1Helas3CmycV2.wig.gz wgEncodeUtaChIPseqSignalHelas3CmycV2.wig.gz mv wgEncodeUncFAIREseqBaseOverlapSignalRep1Helas3V2.wig.gz wgEncodeUncFAIREseqBaseOverlapSignalHelas3V2.wig.gz mv wgEncodeUncFAIREseqBaseOverlapSignalRep1K562V2.wig.gz wgEncodeUncFAIREseqBaseOverlapSignalK562V2.wig.gz mv wgEncodeUncFAIREseqBaseOverlapSignalRep1Nhek.wig.gz wgEncodeUncFAIREseqBaseOverlapSignalNhek.wig.gz mv wgEncodeUncFAIREseqSignalRep1Helas3V2.wig.gz wgEncodeUncFAIREseqSignalHelas3V2.wig.gz mv wgEncodeUncFAIREseqSignalRep1K562V2.wig.gz wgEncodeUncFAIREseqSignalK562V2.wig.gz mv wgEncodeUncFAIREseqSignalRep1Nhek.wig.gz wgEncodeUncFAIREseqSignalNhek.wig.gz # edit trackDb.wgEncode.ra with table name make alpha DBS=hg18 # update downloads Dir cd {downloadsDir} encodeDownloadsPage.pl index.html cp index.html release2/ ### FINALLY put release2 into the pushQ Versioned: # submission 461 (versioning by 277) # submission 471 (versioning by 287) # submission 468 (versioning 278) # submission 495 (versioning 280) # submission 639 (versioning 336, replacing 494) 494 marked superseded # submission 493 (versioning 281) # submission 642 (versioning 282) # submission 556 (versioning 277) # submission 557 (versioning 286) # submission 555 (versioning 283) # submission 593 (versioning 284) # submission 480 (versioning 235,277,116) # submission 640 (versioning 287, replacing 483) 483 marked superseded # submission 481 (versioning 278,244) # submission 482 (versioning 278,245) ### The versioned ones could be superseded when release2 goes public 2009-11-03 Resubmision of base overlaps ======================================= # fix minor validation problems and add "allowReload" to DAFs for 762,763,764,765,766,767 # Update trackDb with new subIds and dateResubmitted # Not submitted?? wgEncodeUtaChIPseqBaseOverlapSignalGm12878Cmyc wgEncodeUtaChIPseqBaseOverlapSignalH1hescPol2 wgEncodeUtaChIPseqBaseOverlapSignalHepg2Pol2 wgEncodeUtaChIPseqBaseOverlapSignalHuvecCmyc wgEncodeUtaChIPseqBaseOverlapSignalHuvecPol2 wgEncodeUtaChIPseqBaseOverlapSignalK562Pol2 # confirmed that these are missing in the bowser on chrX cvs ci trackDb.wgEncode.ra make alpha DBS=hg18 # Now update downloadsDir cd {downloadsDir} ll *Base*.gz # All show 2 links: one in root, one in release2/ ll *Base*.gz | wl 41 ll release2/*Base*.gz | wl 41 ll *Base*.gz | grep "2 qateam" | wl 41 ll release2/*Base*.gz | grep "2 qateam" | wl 41 mv ../wgEncodeDukeDNaseSeq/*Base*.gz . ll *Base*.gz | grep "2 qateam" | wl 29 ll *Base*.gz | grep "1 qateam" | wl 12 mv ../wgEncodeUncFAIREseq/*Base*.gz . ll *Base*.gz | grep "2 qateam" | wl 21 ll *Base*.gz | grep "1 qateam" | wl 20 mv ../wgEncodeUt-aChIPseq/*Base*.gz . ll *Base*.gz | grep "2 qateam" | wl 6 ll *Base*.gz | grep "1 qateam" | wl 35 # Now fix release2/ cd release2/ ll *Base*.gz | grep "2 qateam" | wl 6 ll *Base*.gz | grep "1 qateam" | wl 35 ln ../*Base*.gz . ll *Base*.gz | grep "2 qateam" | wl 6 ll *Base*.gz | grep "1 qateam" | wl 35 # doesn't work, since file is in the way. rm *Base*.gz ln ../*Base*.gz . ll *Base*.gz | grep "2 qateam" | wl 41 ll *Base*.gz | grep "1 qateam" | wl 0 cd .. ll *Base*.gz | grep "2 qateam" | wl 41 ll *Base*.gz | grep "1 qateam" | wl 0 # success # No need to update fileDb, as BO are all tables encodeDownloadsPage.pl index.html /cluster/data/encode/pipeline/bin/encodeStatus.pl 762 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 763 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 764 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 765 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 766 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 767 displayed 2009-11-06 Major screwup. REPAIR ================================ # last 7 submissions were for BO chrX and chrY, but did not include chrs 1-22! # Get files from previous submissions: cd {pip}/770 cd HUVEC/Pol2 ls ls ../../../552/ucsc/*BaseOverlap*.wig # makes a set mv ../../../552/ucsc/*BaseOverlap*.wig . cd ../c-Myc ls ls ../../../635/uc/*BaseOverlap*.wig mv ../../../635/ucsc/*BaseOverlap*.wig . cd ../../GM12878/c-Myc ls ls ../../../472/ucsc/*BaseOverlap*.wig mv ../../../472/ucsc/*BaseOverlap*.wig . cd ../K562/Pol2 ls ls ../../../588/ucsc/*BaseOverlap*.wig mv ../../../588/ucsc/*BaseOverlap*.wig . cd ../H1-hESC/Pol2 ls ls ../../../641/ucsc/*BaseOverlap*.wig mv ../../../641/ucsc/*BaseOverlap*.wig . # unload and resubmit cd {pip}/766 cd GM12891/CTCF ls ls ../../../644/ucsc/*BaseOverlap*.wig mv ../../../644/ucsc/*BaseOverlap*.wig . cd ../../GM12892/CTCF ls ls ../../../638/ucsc/*BaseOverlap*.wig mv ../../../638/ucsc/*BaseOverlap*.wig . ### WARNING only chr1 and chrX found!!! cd ../../GM19238/CTCF ls ls ../../../646/ucsc/*BaseOverlap*.wig mv ../../../646/ucsc/*BaseOverlap*.wig . cd ../../GM19239/CTCF ls ls ../../../648/ucsc/*BaseOverlap*.wig mv ../../../648/ucsc/*BaseOverlap*.wig . cd ../../GM19240/CTCF ls ls ../../../650/ucsc/*BaseOverlap*.wig mv ../../../650/ucsc/*BaseOverlap*.wig . cd ../../H1-hESC/CTCF ls ls ../../../636/ucsc/*BaseOverlap*.wig mv ../../../636/ucsc/*BaseOverlap*.wig . cd ../../HUVEC/CTCF ls ls ../../../548/ucsc/*BaseOverlap*.wig mv ../../../548/ucsc/*BaseOverlap*.wig . cd ../../NHEK/CTCF ls ls ../../../624/ucsc/*BaseOverlap*.wig mv ../../../624/ucsc/*BaseOverlap*.wig . # unload and resubmit cd {pip}/767 cd GM12878/CTCF ls ls ../../../468/ucsc/*BaseOverlap*.wig mv ../../../468/ucsc/*BaseOverlap*.wig . cd ../../HeLa-S3/CTCF ls ls ../../../493/ucsc/*BaseOverlap*.wig mv ../../../493/ucsc/*BaseOverlap*.wig . cd ../c-Myc ls ls ../../../642/ucsc/*BaseOverlap*.wig mv ../../../642/ucsc/*BaseOverlap*.wig . cd ../../HepG2/CTCF ls ls ../../../555/ucsc/*BaseOverlap*.wig mv ../../../555/ucsc/*BaseOverlap*.wig . cd ../c-Myc ls ls ../../../593/ucsc/*BaseOverlap*.wig mv ../../../593/ucsc/*BaseOverlap*.wig . cd ../../K562/CTCF ls ls ../../../481/ucsc/*BaseOverlap*.wig mv ../../../481/ucsc/*BaseOverlap*.wig . cd ../c-Myc ls ls ../../../482/ucsc/*BaseOverlap*.wig mv ../../../482/ucsc/*BaseOverlap*.wig . # unload and resubmit cd {pip}/764 cd H1-hESC ls ls ../../629/ucsc/*BaseOverlap*.wig mv ../../629/ucsc/*BaseOverlap*.wig . cd ../HUVEC ls ls ../../546/ucsc/*BaseOverlap*.wig mv ../../546/ucsc/*BaseOverlap*.wig . cd ../NHEK ls ls ../../630/ucsc/*BaseOverlap*.wig mv ../../630/ucsc/*BaseOverlap*.wig . cd ../PanIslets ls ls ../../686/ucsc/*BaseOverlap*.wig mv ../../686/ucsc/*BaseOverlap*.wig . # unload and resubmit cd {pip}/765 cd GM12878 ls ls ../../471/ucsc/*BaseOverlap*.wig mv ../../471/ucsc/*BaseOverlap*.wig . cd ../HeLa-S3 ls ls ../../639/ucsc/*BaseOverlap*.wig mv ../../639/ucsc/*BaseOverlap*.wig . cd ../HepG2 ls ls ../../557/ucsc/*BaseOverlap*.wig mv ../../557/ucsc/*BaseOverlap*.wig . cd ../K562 ls ls ../../640/ucsc/*BaseOverlap*.wig mv ../../640/ucsc/*BaseOverlap*.wig . # unload and resubmit cd {pip}/762 cd GM12891 ls ls ../../643/ucsc/*BaseOverlap*.wig mv ../../643/ucsc/*BaseOverlap*.wig . cd ../GM12892 ls ls ../../645/ucsc/*BaseOverlap*.wig mv ../../645/ucsc/*BaseOverlap*.wig . cd ../GM19238 ls ls ../../647/ucsc/*BaseOverlap*.wig mv ../../647/ucsc/*BaseOverlap*.wig . cd ../GM19239 ls ls ../../649/ucsc/*BaseOverlap*.wig mv ../../649/ucsc/*BaseOverlap*.wig . cd ../GM19240 ls ls ../../651/ucsc/*BaseOverlap*.wig mv ../../651/ucsc/*BaseOverlap*.wig . cd ../H1-hESC ls ls ../../628/ucsc/*BaseOverlap*.wig mv ../../628/ucsc/*BaseOverlap*.wig . cd ../HUVEC ls ls ../../545/ucsc/*BaseOverlap*.wig mv ../../545/ucsc/*BaseOverlap*.wig . cd ../NHEK ls ls ../../594/ucsc/*BaseOverlap*.wig mv ../../594/ucsc/*BaseOverlap*.wig . # unload and resubmit cd {pip}/763 cd GM12878 ls ls ../../461/ucsc/*BaseOverlap*.wig mv ../../461/ucsc/*BaseOverlap*.wig . cd ../HeLa-S3 ls ls ../../495/ucsc/*BaseOverlap*.wig mv ../../495/ucsc/*BaseOverlap*.wig . ### WARNING Does not have chrX ! Original submission of chrX was labelled H1_ES cd ../HepG2 ls ls ../../556/ucsc/*BaseOverlap*.wig mv ../../556/ucsc/*BaseOverlap*.wig . cd ../K562 ls ls ../../480/ucsc/*BaseOverlap*.wig mv ../../480/ucsc/*BaseOverlap*.wig . # unload and resubmit # Update downloads: cd {downloadsDir} mv ../wgEncodeUncFAIREseq/*.gz . cd release2/ ls ../wgEncodeUncFAIREseqBaseOverlapSignal*.gz rm wgEncodeUncFAIREseqBaseOverlapSignal*.gz ln ../wgEncodeUncFAIREseqBaseOverlapSignal*.gz . cv {downloadsDir} mv /hive/groups/encode/dcc/pipeline/encpipeline_prod/764/wgEncodeUncFAIREseqBaseOverlapSignal*.gz . mv /hive/groups/encode/dcc/pipeline/encpipeline_prod/765/wgEncodeUncFAIREseqBaseOverlapSignal*.gz . cd release2/ ll wgEncodeUncFAIREseqBaseOverlapSignal*.gz # 8 singlr link ll ../wgEncodeUncFAIREseqBaseOverlapSignal*.gz # 8 rm wgEncodeUncFAIREseqBaseOverlapSignal*.gz ln ../wgEncodeUncFAIREseqBaseOverlapSignal*.gz . ll wgEncodeUncFAIREseqBaseOverlapSignal*.gz # 8 double linked cd .. ll ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqBaseOverlapSignal*.gz | wl # 20 ll wgEncodeUtaChIPseqBaseOverlapSignal*.gz | wl # doubly linked 21 HepG2/Pol2 mv ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqBaseOverlapSignal*.gz . cd release2/ ll wgEncodeUtaChIPseqBaseOverlapSignal*.gz | wl # single linked 20, doubly HepG2/Pol2 ll ../wgEncodeUtaChIPseqBaseOverlapSignal*.gz | wl # single linked 20, doubly HepG2/Pol2 rm wgEncodeUtaChIPseqBaseOverlapSignal*.gz ln ../wgEncodeUtaChIPseqBaseOverlapSignal*.gz . ll ../wgEncodeUtaChIPseqBaseOverlapSignal*.gz | wl # double linked 21 HepG2/Pol2 cd .. ll ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqBaseOverlapSignal*.gz | wl # 12 ll wgEncodeDukeDNaseSeqBaseOverlapSignal*.gz | wl # 12 doubly linked mv ../wgEncodeDukeDNaseSeq/wgEncodeDukeDNaseSeqBaseOverlapSignal*.gz . ll wgEncodeDukeDNaseSeqBaseOverlapSignal*.gz | wl # 12 singly linked cd release2/ ll wgEncodeDukeDNaseSeqBaseOverlapSignal*.gz | wl # 12 singly linked ll ../wgEncodeDukeDNaseSeqBaseOverlapSignal*.gz | wl # 12 singly linked rm wgEncodeDukeDNaseSeqBaseOverlapSignal*.gz ln ../wgEncodeDukeDNaseSeqBaseOverlapSignal*.gz . ll ../wgEncodeDukeDNaseSeqBaseOverlapSignal*.gz | wl # 12 doubly linked ## The submission of the missing HepG2/Pol2 773 cd 773 cd HepG2 ls ls ../589/ucsc/HepG2_UtaChIPseq_PolII_BaseOverlap_chr*.wig mv ../589/ucsc/HepG2_UtaChIPseq_PolII_BaseOverlap_chr*.wig . # allowReloads and resubmit # Edit trackDb.wgEncode.ra with 770,771,772,773 # confirm all BO wig values are correct (several needed fixing) # confirm all BO and FD viewLimits are correct (all were correct) make alpha DBS=hg18 # fix up downloads dir cd {downloadDir} ll wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqBaseOverlapSignalHepg2Pol2.wig.gz ll ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqBaseOverlapSignalHepg2Pol2.wig.gz mv ../wgEncodeUt-aChIPseq/wgEncodeUtaChIPseqBaseOverlapSignalHepg2Pol2.wig.gz . cd release2/ rm wgEncodeUtaChIPseqBaseOverlapSignalHepg2Pol2.wig.gz ln ../wgEncodeUtaChIPseqBaseOverlapSignalHepg2Pol2.wig.gz . cd .. encodeDownloadsPage.pl index.html cp index.html release2/ # verify subId=773 on index.html /cluster/data/encode/pipeline/bin/encodeStatus.pl 762 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 763 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 764 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 765 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 766 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 767 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 770 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 771 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 772 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 773 displayed ### At this point all issues for Open Chromatin release 2 should be closed /cluster/data/encode/pipeline/bin/encodeStatus.pl 461 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 468 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 471 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 472 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 480 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 481 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 482 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 493 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 495 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 544 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 545 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 546 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 548 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 552 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 555 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 556 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 557 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 588 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 589 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 593 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 594 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 624 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 628 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 629 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 630 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 635 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 636 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 638 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 639 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 640 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 641 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 642 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 643 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 644 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 645 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 646 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 647 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 648 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 649 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 650 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 651 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 686 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 762 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 763 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 764 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 765 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 766 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 767 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 770 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 771 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 772 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 773 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 461 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 468 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 471 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 472 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 480 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 481 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 482 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 493 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 495 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 544 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 545 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 546 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 548 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 552 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 555 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 556 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 557 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 588 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 589 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 593 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 594 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 624 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 628 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 629 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 630 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 635 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 636 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 638 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 639 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 640 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 641 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 642 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 643 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 644 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 645 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 646 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 647 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 648 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 649 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 650 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 651 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 686 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 762 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 763 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 764 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 765 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 766 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 767 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 770 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 771 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 772 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 773 reviewing 2009-12-14 Released "Release 2" =============================== /cluster/data/encode/pipeline/bin/encodeStatus.pl 104 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 336 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 461 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 468 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 472 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 471 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 481 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 480 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 482 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 493 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 495 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 545 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 546 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 544 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 548 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 552 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 555 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 556 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 557 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 588 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 589 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 593 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 594 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 624 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 628 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 630 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 629 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 635 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 636 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 638 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 641 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 639 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 640 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 643 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 642 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 644 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 645 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 646 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 647 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 649 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 651 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 648 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 650 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 686 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 770 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 764 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 767 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 763 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 765 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 762 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 766 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 771 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 772 released /cluster/data/encode/pipeline/bin/encodeStatus.pl 773 released 2009-12-17 Beginning of Jan 2010 freeze! ======================================== # Incoming is private data which will have no sequence in tagAligns # fails on validateFiles. First error chopByWhile() instead of chopByTab() ~/bin/x86_64/validateFiles -type=tagAlign -chromDb=hg18 -genome=/cluster/data/hg18/hg18.2bit -quick=10 -privateData Raw_FB0167P_DukeDNaseSeq_rep1.taf # 831 DNCT Duke DNaseHS Medullo 20091216 # 834 DNCT Duke DNaseHS ProgFib 20091217 # 835 DNCT Duke DNaseHS PanIslets 20091217 # 836 DNCT Duke DNaseHS HeLa-S3 IFNa4h 20091217 # 847 DNCT UNC FAIRE-Seq GM19239 20091218 # 848 DNCT Duke DNaseHS LHSR 20091218 # 849 DNCT Duke DNaseHS MCF-7 20091218 # 850 DNCT Duke DNaseHS GM18507 20091218 # 851 DNCT Duke DNaseHS LHSR androgen 20091218 # 852 DNCT UNC FAIRE-Seq GM18507 20091219 # 855 DNCT Duke DNaseHS Myoblast 20091219 # 856 DNCT Duke DNaseHS Myotube 20091219 # 857 DNCT Duke DNaseHS Fibrobla 20091220 # 858 DNCT UNC FAIRE-Seq HelaS3 IFNA 20091219 # 859 DNCT UNC FAIRE-Seq HelaS3 IFNG 20091219 # 866 DNCT UTA Input MCF-7 20091222 # 868 DNCT UTA PolII GM12878 20091222 # 871 DNCT UTA Input ProgFib 20091222 # 873 DNCT UNC FAIRE-Seq LHSR 20091222 # 874 DNCT UNC FAIRE-Seq LHSR androgen 20091222 # 877 DNCT Duke DNaseHS H9ES 20091223 # 881 DNCT Duke DNaseHS Chorion 20091227 # 882 DNCT UTA c-Myc H1_hESC 20091227 # 883 DNCT UTA c-Myc MCF-7 20091227 # 884 DNCT UTA CTCF MCF-7 20091227 # 885 DNCT UTA PolII HeLa-S3 20091228 # 886 DNCT UTA CTCF ProgFib 20100101 e /hive/groups/encode/dcc/pipeline/encpipeline_prod/831/out/trackDb.ra ... encodePatchTdb /hive/groups/encode/dcc/pipeline/encpipeline_prod/831/out/trackDb.ra trackDb.wgEncode.ra encodePatchTdb /hive/groups/encode/dcc/pipeline/encpipeline_prod/834/out/trackDb.ra trackDb.wgEncode.ra encodePatchTdb /hive/groups/encode/dcc/pipeline/encpipeline_prod/835/out/trackDb.ra trackDb.wgEncode.ra encodePatchTdb /hive/groups/encode/dcc/pipeline/encpipeline_prod/836/out/trackDb.ra trackDb.wgEncode.ra encodePatchTdb /hive/groups/encode/dcc/pipeline/encpipeline_prod/847/out/trackDb.ra trackDb.wgEncode.ra encodePatchTdb /hive/groups/encode/dcc/pipeline/encpipeline_prod/848/out/trackDb.ra trackDb.wgEncode.ra encodePatchTdb /hive/groups/encode/dcc/pipeline/encpipeline_prod/849/out/trackDb.ra trackDb.wgEncode.ra encodePatchTdb /hive/groups/encode/dcc/pipeline/encpipeline_prod/850/out/trackDb.ra trackDb.wgEncode.ra encodePatchTdb /hive/groups/encode/dcc/pipeline/encpipeline_prod/851/out/trackDb.ra trackDb.wgEncode.ra encodePatchTdb /hive/groups/encode/dcc/pipeline/encpipeline_prod/852/out/trackDb.ra trackDb.wgEncode.ra encodePatchTdb /hive/groups/encode/dcc/pipeline/encpipeline_prod/855/out/trackDb.ra trackDb.wgEncode.ra encodePatchTdb /hive/groups/encode/dcc/pipeline/encpipeline_prod/856/out/trackDb.ra trackDb.wgEncode.ra encodePatchTdb /hive/groups/encode/dcc/pipeline/encpipeline_prod/857/out/trackDb.ra trackDb.wgEncode.ra encodePatchTdb /hive/groups/encode/dcc/pipeline/encpipeline_prod/858/out/trackDb.ra trackDb.wgEncode.ra encodePatchTdb /hive/groups/encode/dcc/pipeline/encpipeline_prod/859/out/trackDb.ra trackDb.wgEncode.ra encodePatchTdb /hive/groups/encode/dcc/pipeline/encpipeline_prod/866/out/trackDb.ra trackDb.wgEncode.ra encodePatchTdb /hive/groups/encode/dcc/pipeline/encpipeline_prod/868/out/trackDb.ra trackDb.wgEncode.ra encodePatchTdb /hive/groups/encode/dcc/pipeline/encpipeline_prod/871/out/trackDb.ra trackDb.wgEncode.ra encodePatchTdb /hive/groups/encode/dcc/pipeline/encpipeline_prod/873/out/trackDb.ra trackDb.wgEncode.ra encodePatchTdb /hive/groups/encode/dcc/pipeline/encpipeline_prod/874/out/trackDb.ra trackDb.wgEncode.ra encodePatchTdb /hive/groups/encode/dcc/pipeline/encpipeline_prod/877/out/trackDb.ra trackDb.wgEncode.ra encodePatchTdb /hive/groups/encode/dcc/pipeline/encpipeline_prod/881/out/trackDb.ra trackDb.wgEncode.ra encodePatchTdb /hive/groups/encode/dcc/pipeline/encpipeline_prod/882/out/trackDb.ra trackDb.wgEncode.ra encodePatchTdb /hive/groups/encode/dcc/pipeline/encpipeline_prod/883/out/trackDb.ra trackDb.wgEncode.ra encodePatchTdb /hive/groups/encode/dcc/pipeline/encpipeline_prod/884/out/trackDb.ra trackDb.wgEncode.ra encodePatchTdb /hive/groups/encode/dcc/pipeline/encpipeline_prod/885/out/trackDb.ra trackDb.wgEncode.ra encodePatchTdb /hive/groups/encode/dcc/pipeline/encpipeline_prod/886/out/trackDb.ra trackDb.wgEncode.ra cd {downloadsDir} cp fileDb.ra fileDb.ra.2010-10-06 grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/831/out/fileDb.ra | grep parentTable > tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/834/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/835/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/836/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/847/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/848/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/849/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/850/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/851/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/852/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/855/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/856/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/857/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/858/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/859/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/866/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/868/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/871/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/873/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/874/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/877/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/881/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/882/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/883/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/884/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/885/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/886/out/fileDb.ra | grep parentTable >> tmp.txt cat tmp.txt >> fileDb.ra encodeDownloadsPage.pl index.html ### Melissa is doing the trackDb updates for the last set. Terry takes the silver. Advice for Melissa: Download dir: # go to download dir: cd /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap # Save the fileDb.ra file before altering it: cp fileDb.ra fileDb.ra.2010-01-14 # Gather all the download only metadata lines from the submission dirs: rm tmp.txt grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/939/out/fileDb.ra | grep parentTable >> tmp.txt grep metadata ... # examine the metadata and edit as needed (I don't think you will have any that needs to be edited) # add to the loacl fileDb.ra (APPEND is very important here) cat tmp.txt >> fileDb.ra # make the html page encodeDonwlasPage.pl index.html # examine the page in the browser. Look for any files (likely at the bottom) which have no metadata # if all is well mark all submission dirs as displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 939 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl ... ### 2010-01-20 Melissa reports that she has all the Open Chromatin submissions displayed! ## At the freeze: select id,name,status, created_at from projects where user_id = 17 and created_at > date('2009-12-01'); +-----+-------------------------------------------+-----------+---------------------+ | id | name | status | created_at | +-----+-------------------------------------------+-----------+---------------------+ | 939 | DNCT Duke DNaseHS AoSMC SFM 20100108 | displayed | 2010-01-08 18:31:51 | | 881 | DNCT Duke DNaseHS Chorion 20091227 | displayed | 2009-12-27 17:35:57 | | 857 | DNCT Duke DNaseHS Fibrobla 20091220 | displayed | 2009-12-20 05:57:18 | | 960 | DNCT Duke DNaseHS FibroP 20100109 | displayed | 2010-01-09 16:56:29 | | 850 | DNCT Duke DNaseHS GM18507 20091218 | displayed | 2009-12-18 19:28:40 | | 877 | DNCT Duke DNaseHS H9ES 20091223 | displayed | 2009-12-23 19:15:10 | | 836 | DNCT Duke DNaseHS HeLa-S3 IFNa4h 20091217 | displayed | 2009-12-18 05:37:27 | | 848 | DNCT Duke DNaseHS LHSR 20091218 | displayed | 2009-12-18 13:42:02 | | 851 | DNCT Duke DNaseHS LHSR androgen 20091218 | displayed | 2009-12-18 19:55:55 | | 849 | DNCT Duke DNaseHS MCF-7 20091218 | displayed | 2009-12-18 14:13:22 | | 831 | DNCT Duke DNaseHS Medullo 20091216 | displayed | 2009-12-16 14:44:25 | | 953 | DNCT Duke DNaseHS Melano 20100108 | displayed | 2010-01-09 04:08:55 | | 855 | DNCT Duke DNaseHS Myoblast 20091219 | displayed | 2009-12-19 20:22:04 | | 940 | DNCT Duke DNaseHS Myometr 20100108 | displayed | 2010-01-08 18:32:45 | | 856 | DNCT Duke DNaseHS Myotube 20091219 | displayed | 2009-12-19 20:56:33 | | 835 | DNCT Duke DNaseHS PanIslets 20091217 | displayed | 2009-12-17 11:19:05 | | 834 | DNCT Duke DNaseHS ProgFib 20091217 | displayed | 2009-12-17 06:02:07 | | 852 | DNCT UNC FAIRE-Seq GM18507 20091219 | displayed | 2009-12-19 15:55:20 | | 847 | DNCT UNC FAIRE-Seq GM19239 20091218 | displayed | 2009-12-18 13:41:10 | | 858 | DNCT UNC FAIRE-Seq HelaS3 IFNA 20091219 | displayed | 2009-12-20 06:35:34 | | 859 | DNCT UNC FAIRE-Seq HelaS3 IFNG 20091219 | displayed | 2009-12-20 06:40:12 | | 873 | DNCT UNC FAIRE-Seq LHSR 20091222 | displayed | 2009-12-22 18:03:01 | | 874 | DNCT UNC FAIRE-Seq LHSR androgen 20091222 | displayed | 2009-12-23 04:17:48 | | 955 | DNCT UNC FAIRE-Seq NHBE 20100108 | displayed | 2010-01-09 04:10:55 | | 882 | DNCT UTA c-Myc H1_hESC 20091227 | displayed | 2009-12-27 18:06:21 | | 883 | DNCT UTA c-Myc MCF-7 20091227 | displayed | 2009-12-28 07:16:35 | | 884 | DNCT UTA CTCF MCF-7 20091227 | displayed | 2009-12-28 07:17:18 | | 886 | DNCT UTA CTCF ProgFib 20100101 | displayed | 2010-01-02 07:57:08 | | 866 | DNCT UTA Input MCF-7 20091222 | displayed | 2009-12-22 12:23:16 | | 871 | DNCT UTA Input ProgFib 20091222 | displayed | 2009-12-22 17:53:14 | | 868 | DNCT UTA PolII GM12878 20091222 | displayed | 2009-12-22 16:28:37 | | 885 | DNCT UTA PolII HeLa-S3 20091228 | displayed | 2009-12-28 07:17:58 | | 969 | DNCT UTA PolII ProgFib 20100109 | displayed | 2010-01-10 07:31:02 | | 829 | DNCT_DukeExonArrays_20091216 | displayed | 2009-12-16 13:33:25 | +-----+-------------------------------------------+-----------+---------------------+ 34 rows ### Phone call on Monday: # Issues: 1) Inconsistent short label: fixed 2) "zinba" peaks for FAIRE: On hold! 3) Version Sep 2009 peaks: Needed by DAC! 4) Minor display issues: Terry will send list 5) Three cell protocols just submitted for approval! # Need to submit/version some older peaks Create sub dirs as me 1097 DNCT Duke DNaseHS V2 Peaks 20100128 1098 DNCT Duke DNaseHS V3 Peaks 20100128 1099 DNCT UNC FAIRE-Seq V2 Peaks 20100128 1100 DNCT UNC FAIRE-Seq V3 Peaks 20100128 1101 DNCT UTA ChIP V2 Peaks 20100128 1102 DNCT UTA ChIP V3 Peaks 20100128 mv ftp'd archives into 1098 1100, 1102 cd 1097 tar -xzf 001_NewPeaks_DAF_DDF & cd ../1098 tar -xzf 001_Duke_Peaks_V3.tgz & cd ../1100 tar -xzf 001_UNC_Peaks_V3.tgz & cd ../1102 tar -xzf 001_UTA_Peaks_V3.tgz & cd ../1097 mv DukeDNaseSeqPeaksOnlyV3.* ../1098 mv UncFAIREseqPeaksOnlyV2.D* ../1099 mv UncFAIREseqPeaksOnlyV3.D* ../1100 mv UtaChIPseqPeaksOnlyV2.D* ../1101 mv UtaChIPseqPeaksOnlyV3.D* ../1102 mkdir DNaseHS cd ../1098 mv DNaseHS/GM12891_DNaseHS.pk ../1097/DNaseHS/ mv DNaseHS/GM12892_DNaseHS.pk ../1097/DNaseHS/ mv DNaseHS/GM19238_DNaseHS.pk ../1097/DNaseHS/ mv DNaseHS/GM19239_DNaseHS.pk ../1097/DNaseHS/ mv DNaseHS/GM19240_DNaseHS.pk ../1097/DNaseHS/ cd ../1099 mkdir FAIRE mv ../1100/FAIRE/HUVEC_FAIRE.pk FAIRE/ mv ../1100/FAIRE/NHEK_FAIRE.pk FAIRE/ mv ../1100/FAIRE/H1ES_FAIRE.pk FAIRE/ cd ../1101 mkdir ChIP mv ../1102/ChIP/HUVEC_CTCF.pk . mv ../1102/ChIP/H1ES_CTCF.pk . mv ../1102/ChIP/GM12891_CTCF.pk . mv ../1102/ChIP/GM12892_CTCF.pk . mv ../1102/ChIP/GM19238_CTCF.pk . mv ../1102/ChIP/GM19239_CTCF.pk . mv ../1102/ChIP/GM19240_CTCF.pk . mv ../1102/ChIP/GM12878_cMyc.pk . mv ../1102/ChIP/HUVEC_cMyc.pk . mv ../1102/ChIP/K562_PolII.pk . mv ../1102/ChIP/HepG2_PolII.pk . mv ../1102/ChIP/HUVEC_PolII.pk . mv ../1102/ChIP/H1ES_PolII.pk . # Submitted # edit trackDb entries for tags, composite, etc. e ../1097/out/trackDb.ra ../1098/out/trackDb.ra ../1099/out/trackDb.ra ../1100/out/trackDb.ra ../1101/out/trackDb.ra ../1102/out/trackDb.ra encodePatchTdb -test=tmp.ra /hive/groups/encode/dcc/pipeline/encpipeline_prod/1097/out/trackDb.ra trackDb.wgEncode.ra encodePatchTdb -test=tmp.ra /hive/groups/encode/dcc/pipeline/encpipeline_prod/1098/out/trackDb.ra trackDb.wgEncode.ra encodePatchTdb -test=tmp.ra /hive/groups/encode/dcc/pipeline/encpipeline_prod/1099/out/trackDb.ra trackDb.wgEncode.ra encodePatchTdb -test=tmp.ra /hive/groups/encode/dcc/pipeline/encpipeline_prod/1100/out/trackDb.ra trackDb.wgEncode.ra encodePatchTdb -test=tmp.ra /hive/groups/encode/dcc/pipeline/encpipeline_prod/1101/out/trackDb.ra trackDb.wgEncode.ra encodePatchTdb -test=tmp.ra /hive/groups/encode/dcc/pipeline/encpipeline_prod/1102/out/trackDb.ra trackDb.wgEncode.ra # edit trackDb.wgEncode.ra to remove older versions! ### Can't get make DBS=hg18 to work: tdbQuery -check rejects 2 OpenChromatins! tdbQuery -check 'select count(*) from hg18' -root=/cluster/home/tdreszer/kent/src/hg/makeDb/trackDb wgEncodeDukeDNaseSeqPeaksGm12878V2 is a subTrack of wgEncodeChromatinMapViewPeaks, but wgEncodeChromatinMapViewPeaks doesn't exist in track wgEncodeDukeDNaseSeqPeaksGm12878V2 stanza starting line 1894 of /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra wgEncodeUncFAIREseqPeaksGm12878V2 is a subTrack of wgEncodeChromatinMapViewPeaks, but wgEncodeChromatinMapViewPeaks doesn't exist ... ### Solved by putting the alpha composite BEFORE the beta composite. However, tdbQuery still has a bug. # however, the tdbQuery bug should be solved by the same changes required to fix the problem requiring 2 composites! cvs ci make alpha DBS=hg18 # remove older versions from downloadsDir mv wgEncodeDukeDNaseSeqPeaksHuvec versioned mv wgEncodeDukeDNaseSeqPeaksNhek versioned mv wgEncodeDukeDNaseSeqPeaksH1hesc versioned mv wgEncodeDukeDNaseSeqPeaksGm12891 versioned mv wgEncodeDukeDNaseSeqPeaksGm12892 versioned mv wgEncodeDukeDNaseSeqPeaksGm19238 versioned mv wgEncodeDukeDNaseSeqPeaksGm19239 versioned mv wgEncodeDukeDNaseSeqPeaksGm19240 versioned mv wgEncodeDukeDNaseSeqPeaksGm12878V2 versioned mv wgEncodeDukeDNaseSeqPeaksK562V2 versioned mv wgEncodeDukeDNaseSeqPeaksHepg2V2 versioned mv wgEncodeDukeDNaseSeqPeaksHelas3V2 versioned mv wgEncodeUncFAIREseqPeaksHuvec versioned mv wgEncodeUncFAIREseqPeaksNhek versioned mv wgEncodeUncFAIREseqPeaksH1hesc versioned mv wgEncodeUncFAIREseqPeaksGm12878V2 versioned mv wgEncodeUncFAIREseqPeaksK562V2 versioned mv wgEncodeUncFAIREseqPeaksHepg2V2 versioned mv wgEncodeUncFAIREseqPeaksHelas3V2 versioned mv wgEncodeUtaChIPseqPeaksHuvecCtcf versioned mv wgEncodeUtaChIPseqPeaksNhekCtcf versioned mv wgEncodeUtaChIPseqPeaksH1hescCtcf versioned mv wgEncodeUtaChIPseqPeaksGm12891Ctcf versioned mv wgEncodeUtaChIPseqPeaksGm12892Ctcf versioned mv wgEncodeUtaChIPseqPeaksGm19238Ctcf versioned mv wgEncodeUtaChIPseqPeaksGm19239Ctcf versioned mv wgEncodeUtaChIPseqPeaksGm19240Ctcf versioned mv wgEncodeUtaChIPseqPeaksGm12878Cmyc versioned mv wgEncodeUtaChIPseqPeaksHuvecCmyc versioned mv wgEncodeUtaChIPseqPeaksK562Pol2 versioned mv wgEncodeUtaChIPseqPeaksHepg2Pol2 versioned mv wgEncodeUtaChIPseqPeaksHuvecPol2 versioned mv wgEncodeUtaChIPseqPeaksH1hescPol2 versioned mv wgEncodeUtaChIPseqPeaksGm12878CtcfV2 versioned mv wgEncodeUtaChIPseqPeaksK562CtcfV2 versioned mv wgEncodeUtaChIPseqPeaksHepg2CtcfV2 versioned mv wgEncodeUtaChIPseqPeaksHelas3CtcfV2 versioned mv wgEncodeUtaChIPseqPeaksK562CmycV2 versioned mv wgEncodeUtaChIPseqPeaksHepg2CmycV2 versioned mv wgEncodeUtaChIPseqPeaksHelas3CmycV2 versioned ## No need: all are peaks: grep metadata /hive/groups/encode/dcc/pipeline/encpipeline_prod/1097/out/fileDbCombined.ra | grep parentTable >> fileDb.ra encodeDownloadsPage.pl index.html . update projects set user_id = 17 where id in (1097,1098,1099,1100,1101,1102); /cluster/data/encode/pipeline/bin/encodeStatus.pl 1097 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 1098 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 1099 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 1100 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 1101 displayed /cluster/data/encode/pipeline/bin/encodeStatus.pl 1102 displayed ## Finishing up freeze: /cluster/data/encode/pipeline/bin/encodeStatus.pl 829 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 831 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 834 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 835 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 836 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 847 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 848 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 849 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 850 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 851 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 852 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 855 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 856 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 857 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 858 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 859 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 866 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 868 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 871 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 873 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 874 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 877 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 881 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 882 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 883 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 884 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 885 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 886 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 939 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 940 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 953 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 955 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 960 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 969 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 1097 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 1098 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 1099 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 1100 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 1101 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 1102 approved # 2010-02-09 Clean up old peaks files from downloads dir. ll wgEncodeDukeDNaseSeqPeaksGm12878V2.narrowPeak.gz wgEncodeDukeDNaseSeqPeaksGm12878V3.narrowPeak.gz ll wgEncodeDukeDNaseSeqPeaksGm12891.narrowPeak.gz wgEncodeDukeDNaseSeqPeaksGm12891V2.narrowPeak.gz ll wgEncodeDukeDNaseSeqPeaksGm12892.narrowPeak.gz wgEncodeDukeDNaseSeqPeaksGm12892V2.narrowPeak.gz ll wgEncodeDukeDNaseSeqPeaksGm19238.narrowPeak.gz wgEncodeDukeDNaseSeqPeaksGm19238V2.narrowPeak.gz ll wgEncodeDukeDNaseSeqPeaksGm19239.narrowPeak.gz wgEncodeDukeDNaseSeqPeaksGm19239V2.narrowPeak.gz ll wgEncodeDukeDNaseSeqPeaksGm19240.narrowPeak.gz wgEncodeDukeDNaseSeqPeaksGm19240V2.narrowPeak.gz ll wgEncodeDukeDNaseSeqPeaksH1hesc.narrowPeak.gz wgEncodeDukeDNaseSeqPeaksH1hescV2.narrowPeak.gz ll wgEncodeDukeDNaseSeqPeaksHelas3V2.narrowPeak.gz wgEncodeDukeDNaseSeqPeaksHelas3V3.narrowPeak.gz ll wgEncodeDukeDNaseSeqPeaksHepg2V2.narrowPeak.gz wgEncodeDukeDNaseSeqPeaksHepg2V3.narrowPeak.gz ll wgEncodeDukeDNaseSeqPeaksHuvec.narrowPeak.gz wgEncodeDukeDNaseSeqPeaksHuvecV2.narrowPeak.gz ll wgEncodeDukeDNaseSeqPeaksK562V2.narrowPeak.gz wgEncodeDukeDNaseSeqPeaksK562V3.narrowPeak.gz ll wgEncodeDukeDNaseSeqPeaksNhek.narrowPeak.gz wgEncodeDukeDNaseSeqPeaksNhekV2.narrowPeak.gz ll wgEncodeUncFAIREseqPeaksGm12878V2.narrowPeak.gz wgEncodeUncFAIREseqPeaksGm12878V3.narrowPeak.gz ll wgEncodeUncFAIREseqPeaksH1hesc.narrowPeak.gz wgEncodeUncFAIREseqPeaksH1hescV2.narrowPeak.gz ll wgEncodeUncFAIREseqPeaksHelas3V2.narrowPeak.gz wgEncodeUncFAIREseqPeaksHelas3V3.narrowPeak.gz ll wgEncodeUncFAIREseqPeaksHepg2V2.narrowPeak.gz wgEncodeUncFAIREseqPeaksHepg2V3.narrowPeak.gz ll wgEncodeUncFAIREseqPeaksHuvec.narrowPeak.gz wgEncodeUncFAIREseqPeaksHuvecV2.narrowPeak.gz ll wgEncodeUncFAIREseqPeaksK562V2.narrowPeak.gz wgEncodeUncFAIREseqPeaksK562V3.narrowPeak.gz ll wgEncodeUncFAIREseqPeaksNhek.narrowPeak.gz wgEncodeUncFAIREseqPeaksNhekV2.narrowPeak.gz ll wgEncodeUtaChIPseqPeaksGm12878Cmyc.narrowPeak.gz wgEncodeUtaChIPseqPeaksGm12878CmycV2.narrowPeak.gz ll wgEncodeUtaChIPseqPeaksGm12878CtcfV2.narrowPeak.gz wgEncodeUtaChIPseqPeaksGm12878CtcfV3.narrowPeak.gz ll wgEncodeUtaChIPseqPeaksGm12891Ctcf.narrowPeak.gz wgEncodeUtaChIPseqPeaksGm12891CtcfV2.narrowPeak.gz ll wgEncodeUtaChIPseqPeaksGm12892Ctcf.narrowPeak.gz wgEncodeUtaChIPseqPeaksGm12892CtcfV2.narrowPeak.gz ll wgEncodeUtaChIPseqPeaksGm19238Ctcf.narrowPeak.gz wgEncodeUtaChIPseqPeaksGm19238CtcfV2.narrowPeak.gz ll wgEncodeUtaChIPseqPeaksGm19239Ctcf.narrowPeak.gz wgEncodeUtaChIPseqPeaksGm19239CtcfV2.narrowPeak.gz ll wgEncodeUtaChIPseqPeaksGm19240Ctcf.narrowPeak.gz wgEncodeUtaChIPseqPeaksGm19240CtcfV2.narrowPeak.gz ll wgEncodeUtaChIPseqPeaksH1hescCtcf.narrowPeak.gz wgEncodeUtaChIPseqPeaksH1hescCtcfV2.narrowPeak.gz ll wgEncodeUtaChIPseqPeaksH1hescPol2.narrowPeak.gz wgEncodeUtaChIPseqPeaksH1hescPol2V2.narrowPeak.gz ll wgEncodeUtaChIPseqPeaksHelas3CmycV2.narrowPeak.gz wgEncodeUtaChIPseqPeaksHelas3CmycV3.narrowPeak.gz ll wgEncodeUtaChIPseqPeaksHelas3CtcfV2.narrowPeak.gz wgEncodeUtaChIPseqPeaksHelas3CtcfV3.narrowPeak.gz ll wgEncodeUtaChIPseqPeaksHepg2CmycV2.narrowPeak.gz wgEncodeUtaChIPseqPeaksHepg2CmycV3.narrowPeak.gz ll wgEncodeUtaChIPseqPeaksHepg2CtcfV2.narrowPeak.gz wgEncodeUtaChIPseqPeaksHepg2CtcfV3.narrowPeak.gz ll wgEncodeUtaChIPseqPeaksHepg2Pol2.narrowPeak.gz wgEncodeUtaChIPseqPeaksHepg2Pol2V2.narrowPeak.gz ll wgEncodeUtaChIPseqPeaksHuvecCmyc.narrowPeak.gz wgEncodeUtaChIPseqPeaksHuvecCmycV2.narrowPeak.gz ll wgEncodeUtaChIPseqPeaksHuvecCtcf.narrowPeak.gz wgEncodeUtaChIPseqPeaksHuvecCtcfV2.narrowPeak.gz ll wgEncodeUtaChIPseqPeaksHuvecPol2.narrowPeak.gz wgEncodeUtaChIPseqPeaksHuvecPol2V2.narrowPeak.gz ll wgEncodeUtaChIPseqPeaksK562CmycV2.narrowPeak.gz wgEncodeUtaChIPseqPeaksK562CmycV3.narrowPeak.gz ll wgEncodeUtaChIPseqPeaksK562CtcfV2.narrowPeak.gz wgEncodeUtaChIPseqPeaksK562CtcfV3.narrowPeak.gz ll wgEncodeUtaChIPseqPeaksK562Pol2.narrowPeak.gz wgEncodeUtaChIPseqPeaksK562Pol2V3.narrowPeak.gz ll wgEncodeUtaChIPseqPeaksNhekCtcf.narrowPeak.gz wgEncodeUtaChIPseqPeaksNhekCtcfV2.narrowPeak.gz rm wgEncodeDukeDNaseSeqPeaksGm12878V2.narrowPeak.gz rm wgEncodeDukeDNaseSeqPeaksGm12891.narrowPeak.gz rm wgEncodeDukeDNaseSeqPeaksGm12892.narrowPeak.gz rm wgEncodeDukeDNaseSeqPeaksGm19238.narrowPeak.gz rm wgEncodeDukeDNaseSeqPeaksGm19239.narrowPeak.gz rm wgEncodeDukeDNaseSeqPeaksGm19240.narrowPeak.gz rm wgEncodeDukeDNaseSeqPeaksH1hesc.narrowPeak.gz rm wgEncodeDukeDNaseSeqPeaksHelas3V2.narrowPeak.gz rm wgEncodeDukeDNaseSeqPeaksHepg2V2.narrowPeak.gz rm wgEncodeDukeDNaseSeqPeaksHuvec.narrowPeak.gz rm wgEncodeDukeDNaseSeqPeaksK562V2.narrowPeak.gz rm wgEncodeDukeDNaseSeqPeaksNhek.narrowPeak.gz rm wgEncodeUncFAIREseqPeaksGm12878V2.narrowPeak.gz rm wgEncodeUncFAIREseqPeaksH1hesc.narrowPeak.gz rm wgEncodeUncFAIREseqPeaksHelas3V2.narrowPeak.gz rm wgEncodeUncFAIREseqPeaksHepg2V2.narrowPeak.gz rm wgEncodeUncFAIREseqPeaksHuvec.narrowPeak.gz rm wgEncodeUncFAIREseqPeaksK562V2.narrowPeak.gz rm wgEncodeUncFAIREseqPeaksNhek.narrowPeak.gz rm wgEncodeUtaChIPseqPeaksGm12878Cmyc.narrowPeak.gz rm wgEncodeUtaChIPseqPeaksGm12878CtcfV2.narrowPeak.gz rm wgEncodeUtaChIPseqPeaksGm12891Ctcf.narrowPeak.gz rm wgEncodeUtaChIPseqPeaksGm12892Ctcf.narrowPeak.gz rm wgEncodeUtaChIPseqPeaksGm19238Ctcf.narrowPeak.gz rm wgEncodeUtaChIPseqPeaksGm19239Ctcf.narrowPeak.gz rm wgEncodeUtaChIPseqPeaksGm19240Ctcf.narrowPeak.gz rm wgEncodeUtaChIPseqPeaksH1hescCtcf.narrowPeak.gz rm wgEncodeUtaChIPseqPeaksH1hescPol2.narrowPeak.gz rm wgEncodeUtaChIPseqPeaksHelas3CmycV2.narrowPeak.gz rm wgEncodeUtaChIPseqPeaksHelas3CtcfV2.narrowPeak.gz rm wgEncodeUtaChIPseqPeaksHepg2CmycV2.narrowPeak.gz rm wgEncodeUtaChIPseqPeaksHepg2CtcfV2.narrowPeak.gz rm wgEncodeUtaChIPseqPeaksHepg2Pol2.narrowPeak.gz rm wgEncodeUtaChIPseqPeaksHuvecCmyc.narrowPeak.gz rm wgEncodeUtaChIPseqPeaksHuvecCtcf.narrowPeak.gz rm wgEncodeUtaChIPseqPeaksHuvecPol2.narrowPeak.gz rm wgEncodeUtaChIPseqPeaksK562CmycV2.narrowPeak.gz rm wgEncodeUtaChIPseqPeaksK562CtcfV2.narrowPeak.gz rm wgEncodeUtaChIPseqPeaksK562Pol2.narrowPeak.gz rm wgEncodeUtaChIPseqPeaksNhekCtcf.narrowPeak.gz /cluster/data/encode/pipeline/bin/encodeStatus.pl 856 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 874 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 829 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 831 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 834 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 835 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 836 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/cluster/data/encode/pipeline/bin/encodeStatus.pl 955 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 969 reviewing 2010-03-24 Zinba Peaks ====================== make submission dir 1127 move ftp'd tar into place. tar -xzf 001_UncFAIREseq_zinba.tgz & # patch up some DAF/DDF ~qateam/bin/scripts/doEncodeValidate.pl . /hive/groups/encode/dcc/pipeline/encpipeline_prod/1127 # various work to use old pipline stuff supporting wgEncode naming style ~qateam/bin/scripts/doEncodeLoad.pl . /hive/groups/encode/dcc/pipeline/encpipeline_prod/1127 update projects set status = "loaded" where id= 1127; update projects set user_id = 17 where id = 1127; # loaded into my sandbox. Need to discuss adding them into PushQ /cluster/data/encode/pipeline/bin/encodeStatus.pl 1127 displayed cd {downloadsDir} mv ../wgEncodeUncFAIRE/*.gz . cd release3/ ln ../*Zinba* . cd .. encodeDownloadsPage.pl index.html . Old: /cluster/data/encode/pipeline/bin/encodeStatus.pl 857 reviewing ### had to reload because of mising NHEK ~qateam/bin/scripts/doEncodeLoad.pl . /hive/groups/encode/dcc/pipeline/encpipeline_prod/1127 2010-04-23 Standardize to setType, inputType ============================================ mdbPrint hg18 -vars="composite=wgEncodeChromatinMap" -countObjs Using table named 'hg18.mdb_tdreszer'. 615 objects mdbPrint hg18 -vars="composite=wgEncodeChromatinMap dataType=ChIPseq" -countObjs 250 objects mdbPrint hg18 -vars="composite=wgEncodeChromatinMap antibody=Input" -countObjs 20 objects mdbPrint hg18 -vars="composite=wgEncodeChromatinMap dataType=ChIPseq antibody=Input" -countObjs 20 objects ## So some ChIP cell lines have input and others use a model of input select distinct t1.val cell from mdb_tdreszer t1,mdb_tdreszer t2 where t1.obj like "wgEncodeUta%" and t1.obj = t2.obj and t1.var = "cell" and t2.var = "antibody" and t2.val = "Input" order by t1.val,t2.val; +---------+ | GM12878 | | HUVEC | | HeLa-S3 | | HepG2 | | K562 | | MCF-7 | | ProgFib | +---------+ 7 rows in set (0.02 sec) select distinct t3.val cell from mdb_tdreszer t3 where t3.var = "cell" and t3.obj like "wgEncodeUta%" and t3.val not in (select t1.val from mdb_tdreszer t1,mdb_tdreszer t2 where t1.obj like "wgEncodeUta%" and t1.obj = t2.obj and t1.var = "cell" and t2.var = "antibody" and t2.val = "Input") order by t3.val; +---------+ | GM12891 | | GM12892 | | GM19238 | | GM19239 | | GM19240 | | H1-hESC | | NHEK | +---------+ 7 rows in set (0.27 sec) select distinct t3.val cell from mdb_tdreszer t3 where t3.var = "cell" and t3.obj like "wgEncodeUta%"; 14 rows in set (0.03 sec) mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=ChIPseq antibody=Input" -var=setType -val=input Affected 20 row(s) in hg18.mdb_tdreszer mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=ChIPseq antibody!=Input" -var=setType -val=exp Affected 230 row(s) in hg18.mdb_tdreszer mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=ChIPseq cell=GM12878" -var=inputType val=GM12878/Input mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=ChIPseq cell=HUVEC " -var=inputType val=HUVEC/Input mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=ChIPseq cell=HeLa-S3" -var=inputType val=HeLa-S3/Input mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=ChIPseq cell=HepG2 " -var=inputType val=HepG2/Input mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=ChIPseq cell=K562 " -var=inputType val=K562/Input mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=ChIPseq cell=MCF-7 " -var=inputType val=MCF-7/Input mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=ChIPseq cell=ProgFib" -var=inputType val=ProgFib/Input Affected 32 row(s) in hg18.mdb_tdreszer Affected 22 row(s) in hg18.mdb_tdreszer Affected 32 row(s) in hg18.mdb_tdreszer Affected 38 row(s) in hg18.mdb_tdreszer Affected 40 row(s) in hg18.mdb_tdreszer Affected 17 row(s) in hg18.mdb_tdreszer Affected 12 row(s) in hg18.mdb_tdreszer mdbPrint hg18 -vars="composite=wgEncodeChromatinMap dataType=ChIPseq inputType=?" -countObjs 193 objects mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=ChIPseq cell=GM12891" -var=inputType val=modelled mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=ChIPseq cell=GM12892" -var=inputType val=modelled mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=ChIPseq cell=GM19238" -var=inputType val=modelled mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=ChIPseq cell=GM19239" -var=inputType val=modelled mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=ChIPseq cell=GM19240" -var=inputType val=modelled mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=ChIPseq cell=H1-hESC" -var=inputType val=modelled mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=ChIPseq cell=NHEK " -var=inputType val=modelled Affected 7 row(s) in hg18.mdb_tdreszer Affected 7 row(s) in hg18.mdb_tdreszer Affected 7 row(s) in hg18.mdb_tdreszer Affected 7 row(s) in hg18.mdb_tdreszer Affected 7 row(s) in hg18.mdb_tdreszer Affected 15 row(s) in hg18.mdb_tdreszer Affected 7 row(s) in hg18.mdb_tdreszer mdbPrint hg18 -vars="composite=wgEncodeChromatinMap dataType=ChIPseq inputType=?" -countObjs 250 objects ## What about DNase? What about FAIRE? mdbPrint hg18 -vars="composite=wgEncodeChromatinMap dataType=DNaseSeq" -countObjs 223 objects mdbPrint hg18 -vars="composite=wgEncodeChromatinMap dataType=FAIREseq" -countObjs 142 objects # Don't bother with these because DNase and FAIRE are always setTpe=exp ! #mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=DNaseSeq" -var=setType -val=exp -test #mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=FAIREseq" -var=setType -val=exp -test mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=DNaseSeq cell=GM12878" -var=inputType val=GM12878/Input mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=DNaseSeq cell=HUVEC " -var=inputType val=HUVEC/Input mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=DNaseSeq cell=HeLa-S3" -var=inputType val=HeLa-S3/Input mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=DNaseSeq cell=HepG2 " -var=inputType val=HepG2/Input mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=DNaseSeq cell=K562 " -var=inputType val=K562/Input mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=DNaseSeq cell=MCF-7 " -var=inputType val=modelled mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=DNaseSeq cell=ProgFib" -var=inputType val=modelled mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=DNaseSeq cell=GM12891" -var=inputType val=modelled mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=DNaseSeq cell=GM12892" -var=inputType val=modelled mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=DNaseSeq cell=GM19238" -var=inputType val=modelled mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=DNaseSeq cell=GM19239" -var=inputType val=modelled mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=DNaseSeq cell=GM19240" -var=inputType val=modelled mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=DNaseSeq cell=H1-hESC" -var=inputType val=modelled mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=DNaseSeq cell=NHEK " -var=inputType val=modelled mdbPrint hg18 -vars="composite=wgEncodeChromatinMap dataType=DNaseSeq inputType=?" -countObjs 133 objects ??? expecting 223! mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=FAIREseq cell=GM12878" -var=inputType val=GM12878/Input mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=FAIREseq cell=HUVEC " -var=inputType val=HUVEC/Input mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=FAIREseq cell=HeLa-S3" -var=inputType val=HeLa-S3/Input mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=FAIREseq cell=HepG2 " -var=inputType val=HepG2/Input mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=FAIREseq cell=K562 " -var=inputType val=K562/Input mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=FAIREseq cell=MCF-7 " -var=inputType val=modelled mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=FAIREseq cell=ProgFib" -var=inputType val=modelled mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=FAIREseq cell=GM12891" -var=inputType val=modelled mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=FAIREseq cell=GM12892" -var=inputType val=modelled mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=FAIREseq cell=GM19238" -var=inputType val=modelled mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=FAIREseq cell=GM19239" -var=inputType val=modelled mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=FAIREseq cell=GM19240" -var=inputType val=modelled mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=FAIREseq cell=H1-hESC" -var=inputType val=modelled mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=FAIREseq cell=NHEK " -var=inputType val=modelled mdbPrint hg18 -vars="composite=wgEncodeChromatinMap dataType=FAIREseq inputType=?" -countObjs 109 objects ??? expecting 142! # answer is that DNase and FAIRE both have cell types that are not in this ggroup of 14 select distinct val cell from mdb_tdreszer where obj like "wgEncodeDuke%" and var = "cell" and val not in ("GM12878","HUVEC","HeLa-S3","HepG2","K562","MCF-7","ProgFib","GM12891","GM12892","GM19238","GM19239","GM19240","H1-hESC","NHEK"); 13 rows in set (0.01 sec) select distinct val cell from mdb_tdreszer where obj like "wgEncodeUnc%" and var = "cell" and val not in ("GM12878","HUVEC","HeLa-S3","HepG2","K562","MCF-7","ProgFib","GM12891","GM12892","GM19238","GM19239","GM19240","H1-hESC","NHEK"); 4 rows in set (0.02 sec) # Simplest: default all then set few mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=DNaseSeq" -var=inputType val=modelled mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=DNaseSeq cell=GM12878" -var=inputType val=GM12878/Input mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=DNaseSeq cell=HUVEC " -var=inputType val=HUVEC/Input mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=DNaseSeq cell=HeLa-S3" -var=inputType val=HeLa-S3/Input mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=DNaseSeq cell=HepG2 " -var=inputType val=HepG2/Input mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=DNaseSeq cell=K562 " -var=inputType val=K562/Input mdbPrint hg18 -vars="composite=wgEncodeChromatinMap dataType=DNaseSeq inputType=?" -countObjs 223 objects mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=FAIREseq" -var=inputType val=modelled mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=FAIREseq cell=GM12878" -var=inputType val=GM12878/Input mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=FAIREseq cell=HUVEC " -var=inputType val=HUVEC/Input mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=FAIREseq cell=HeLa-S3" -var=inputType val=HeLa-S3/Input mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=FAIREseq cell=HepG2 " -var=inputType val=HepG2/Input mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap dataType=FAIREseq cell=K562 " -var=inputType val=K562/Input mdbPrint hg18 -vars="composite=wgEncodeChromatinMap dataType=FAIREseq inputType=?" -countObjs 142 objects mdbPrint hg18 -vars="composite=wgEncodeChromatinMap" > mdbOpenChrom.ra Using table named 'hg18.mdb_tdreszer'. objects:615 vars:10908 mdbUpdate hg18 -table=mdb mdbOpenChrom.ra -force Read 615 metadata objects from hg18 Affected 865 row(s) in hg18.mdb ### Note that mdbOpenChrom contqains something that violates the magic. Something that is treated differently if it is read from the mdb as opposed to read from a file? cvs ci -m "Extended setType and inputType to Open Chromatin" mdbOpenChrom.ra cd {downloadsDir}ChromatinMap encodeDownloadsPage.pl -mdb=mdb index.html . ### Tests to find offending string offending magic mdbPrint hg18 -vars="composite=wgEncodeChromatinMap dataType=FAIREseq" > testOpenChrom.ra mdbUpdate hg18 -table=mdb testOpenChrom.ra -test Update to shared table 'mdb' requires file directly written by mdbPrint from sandbox file. mdbPrint hg18 -vars="composite=wgEncodeChromatinMap dataType=DNaseSeq" > testOpenChrom.ra mdbUpdate hg18 -table=mdb testOpenChrom.ra -test Update to shared table 'mdb' requires file directly written by mdbPrint from sandbox file. mdbPrint hg18 -vars="composite=wgEncodeChromatinMap dataType=ChIPseq" > testOpenChrom.ra mdbUpdate hg18 -table=mdb testOpenChrom.ra -test Update to shared table 'mdb' requires file directly written by mdbPrint from sandbox file. All three suffer!!! mdbPrint hg18 -vars="composite=wgEncodeChromatinMap cell=GM12878" > testOpenChrom.ra mdbUpdate hg18 -table=mdb testOpenChrom.ra -test mdbPrint hg18 -vars="composite=wgEncodeChromatinMap cell!=GM12878" > testOpenChrom.ra mdbUpdate hg18 -table=mdb testOpenChrom.ra -test All GM12878 suffers along with others mdbPrint hg18 -vars="composite=wgEncodeChromatinMap cell=GM12878 view=Signal" > testOpenChrom.ra mdbUpdate hg18 -table=mdb testOpenChrom.ra -test mdbPrint hg18 -vars="composite=wgEncodeChromatinMap view=Signal" > testOpenChrom.ra mdbUpdate hg18 -table=mdb testOpenChrom.ra -test # Signals are fine mdbPrint hg18 -vars="composite=wgEncodeChromatinMap view=Peaks" > testOpenChrom.ra mdbUpdate hg18 -table=mdb testOpenChrom.ra -test # Peaks are fine mdbPrint hg18 -vars="composite=wgEncodeChromatinMap view=peaksZinba" > testOpenChrom.ra mdbUpdate hg18 -table=mdb testOpenChrom.ra -test # Zinba Peaks are fine mdbPrint hg18 -vars="composite=wgEncodeChromatinMap view=Base_Overlap_Signal" > testOpenChrom.ra mdbUpdate hg18 -table=mdb testOpenChrom.ra -test # BO Signals are fine mdbPrint hg18 -vars="composite=wgEncodeChromatinMap view=RawData" > testOpenChrom.ra mdbUpdate hg18 -table=mdb testOpenChrom.ra -test # Raw Data is fine mdbPrint hg18 -vars="composite=wgEncodeChromatinMap view=Alignments" > testOpenChrom.ra mdbUpdate hg18 -table=mdb testOpenChrom.ra -test Update to shared table 'mdb' requires file directly written by mdbPrint from sandbox file. mdbPrint hg18 -vars="composite=wgEncodeChromatinMap view!=Alignments" > testOpenChrom.ra mdbUpdate hg18 -table=mdb testOpenChrom.ra -test # Alignmens and ONLY Alignments fail! mdbPrint hg18 -vars="composite=wgEncodeChromatinMap view=Alignments cell=GM12878 antibody=Pol2" > testOpenChrom.ra mdbUpdate hg18 -table=mdb testOpenChrom.ra -test mdbPrint hg18 -vars="composite=wgEncodeChromatinMap view=Alignments" | grep labVersion | m mdbPrint hg18 -vars="composite=wgEncodeChromatinMap view=Alignments labVersion!=%align_on_cluster%" > testOpenChrom.ra mdbUpdate hg18 -table=mdb testOpenChrom.ra -test mdbPrint hg18 -vars="composite=wgEncodeChromatinMap view=Alignments labVersion=%align_on_cluster%" > testOpenChrom.ra mdbUpdate hg18 -table=mdb testOpenChrom.ra -test # %align_on_cluster% is the cluprit select distinct val from mdb_tdreszer where var = "labVersion" and val like "%align_on_cluster%"; +----------------------------------+ | val | +----------------------------------+ | align_on_cluster.pl v 1 | | DNaseHS, align_on_cluster.pl v 1 | +----------------------------------+ mdbUpdate hg18 -vars="composite=wgEncodeChromatinMap view=Alignments labVersion=%align_on_cluster%" -var=labVersion -val="align_on_cluster.pl v 1" Using table named 'hg18.mdb_tdreszer'. Affected 159 row(s) in hg18.mdb_tdreszer mdbPrint hg18 -vars="composite=wgEncodeChromatinMap" > mdbOpenChrom.ra mdbUpdate hg18 -table=mdb mdbOpenChrom.ra -test ## Problem solved!! cvs ci -m "Fixed labVersions with leading blank that were screwing up MAGIC" mdbOpenChrom.ra 2010-05-26 Oops! Forgot to set status ====================================== /cluster/data/encode/pipeline/bin/encodeStatus.pl 1127 approved /cluster/data/encode/pipeline/bin/encodeStatus.pl 1127 reviewing /cluster/data/encode/pipeline/bin/encodeStatus.pl 1127 released 2011-04-20 Experimentify ======================== cd trackDb/human/hg18/metaDb/alpha mdbPrint hg18 -composite=%ChromatinMap -experimentify > tmp.txt Using hgFixed.encodeExp Using table named 'hg18.metaDb_tdreszer'. objects:534 vars:9169 mdbUpdate hg18 -composite=%ChromatinMap -encodeExp=std -test Using hgFixed.encodeExp Using table named 'hg18.metaDb_tdreszer'. Composite 'wgEncodeChromatinMap' has 79 recognizable experiments with 79 missing an expId. objects/experiment: min:2 max:10 mean:6.746835. Found 533 of 534 object(s) would have their experiment ID updated. Command would affected 533 row(s) in hg18.metaDb_tdreszer mdbUpdate hg18 -composite=%ChromatinMap -encodeExp=std Using hgFixed.encodeExp Using table named 'hg18.metaDb_tdreszer'. Composite 'wgEncodeChromatinMap' has 79 recognizable experiments with 79 missing an expId. objects/experiment: min:2 max:10 mean:6.746835. Affected 533 row(s) in hg18.metaDb_tdreszer mdbUpdate hg18 -composite=%ChromatinMap -encodeExp=std -accession -test Using hgFixed.encodeExp Using table named 'hg18.metaDb_tdreszer'. Composite 'wgEncodeChromatinMap' has 79 recognizable experiments with 0 missing an expId. objects/experiment: min:2 max:10 mean:6.746835. Found 533 of 534 object(s) would have their experiment ID updated. Command would affected 533 row(s) in hg18.metaDb_tdreszer mdbUpdate hg18 -composite=%ChromatinMap -encodeExp=std -accession Using hgFixed.encodeExp Using table named 'hg18.metaDb_tdreszer'. Composite 'wgEncodeChromatinMap' has 79 recognizable experiments with 0 missing an expId. objects/experiment: min:2 max:10 mean:6.746835. Affected 533 row(s) in hg18.metaDb_tdreszer mdbPrint hg18 -composite=wgEncodeChromatinMap > wgEncodeChromatinMap.ra Using table named 'hg18.metaDb_tdreszer'. objects:534 vars:10235 gold wgEncodeChromatinMap.ra gold, gadd, gci, gup,gpush cd {downloads}/wgEncodeChromatinMap encodeDownloadsPage.pl -db=hg18 index.html