This is a second release of the "ENCODE RIKEN CAGE Loc track" The composite track is wgEncodeRikenCage Categories of tables and files: A) Untouched - are on public browser and shall remain 33 tables, 47 files B) Elmininated - are currently on RR but will no longer be needed and should not be referenced by the public site 0 tables, 0 files C) Replaced - are on public browser but will be replaced by something with another name (nothing should be replace by something with the same name) 0 tables, 0 files D) Versioned (replacing) - are only currently on test but will need to be pushed to RR as replacements for existing datasets (with a different name) 0 tables, 0 files E) New - are only currently on test but will need to be pushed to the RR. 24 tables, 32 files, 8 gbdb F) Additional items of note A) Untouched A.a) Untouched tables: 33 wgEncodeRikenCageAlignmentsGm12878CytosolLongnonpolya wgEncodeRikenCageAlignmentsGm12878NucleusLongnonpolya wgEncodeRikenCageAlignmentsK562ChromatinTotal wgEncodeRikenCageAlignmentsK562CytosolLongnonpolya wgEncodeRikenCageAlignmentsK562CytosolLongpolya wgEncodeRikenCageAlignmentsK562NucleolusTotal wgEncodeRikenCageAlignmentsK562NucleoplasmTotal wgEncodeRikenCageAlignmentsK562NucleusLongnonpolya wgEncodeRikenCageAlignmentsK562NucleusLongpolya wgEncodeRikenCageAlignmentsK562PolysomeLongnonpolya wgEncodeRikenCageAlignmentsProstateCellLongnonpolya wgEncodeRikenCageMinusClustersGm12878CytosolLongnonpolya wgEncodeRikenCageMinusClustersGm12878NucleusLongnonpolya wgEncodeRikenCageMinusClustersK562ChromatinTotal wgEncodeRikenCageMinusClustersK562CytosolLongnonpolya wgEncodeRikenCageMinusClustersK562CytosolLongpolya wgEncodeRikenCageMinusClustersK562NucleolusTotal wgEncodeRikenCageMinusClustersK562NucleoplasmTotal wgEncodeRikenCageMinusClustersK562NucleusLongnonpolya wgEncodeRikenCageMinusClustersK562NucleusLongpolya wgEncodeRikenCageMinusClustersK562PolysomeLongnonpolya wgEncodeRikenCageMinusClustersProstateCellLongnonpolya wgEncodeRikenCagePlusClustersGm12878CytosolLongnonpolya wgEncodeRikenCagePlusClustersGm12878NucleusLongnonpolya wgEncodeRikenCagePlusClustersK562ChromatinTotal wgEncodeRikenCagePlusClustersK562CytosolLongnonpolya wgEncodeRikenCagePlusClustersK562CytosolLongpolya wgEncodeRikenCagePlusClustersK562NucleolusTotal wgEncodeRikenCagePlusClustersK562NucleoplasmTotal wgEncodeRikenCagePlusClustersK562NucleusLongnonpolya wgEncodeRikenCagePlusClustersK562NucleusLongpolya wgEncodeRikenCagePlusClustersK562PolysomeLongnonpolya wgEncodeRikenCagePlusClustersProstateCellLongnonpolya A.b) Untouched files: 47 wgEncodeRikenCageAlignmentsGm12878CytosolLongnonpolya.tagAlign.gz wgEncodeRikenCageAlignmentsGm12878NucleusLongnonpolya.tagAlign.gz wgEncodeRikenCageAlignmentsK562ChromatinTotal.tagAlign.gz wgEncodeRikenCageAlignmentsK562CytosolLongnonpolya.tagAlign.gz wgEncodeRikenCageAlignmentsK562CytosolLongpolya.tagAlign.gz wgEncodeRikenCageAlignmentsK562NucleolusTotal.tagAlign.gz wgEncodeRikenCageAlignmentsK562NucleoplasmTotal.tagAlign.gz wgEncodeRikenCageAlignmentsK562NucleusLongnonpolya.tagAlign.gz wgEncodeRikenCageAlignmentsK562NucleusLongpolya.tagAlign.gz wgEncodeRikenCageAlignmentsK562PolysomeLongnonpolya.tagAlign.gz wgEncodeRikenCageAlignmentsProstateCellLongnonpolya.tagAlign.gz wgEncodeRikenCageMinusClustersGm12878CytosolLongnonpolya.bedGraph4.gz wgEncodeRikenCageMinusClustersGm12878NucleusLongnonpolya.bedGraph4.gz wgEncodeRikenCageMinusClustersK562ChromatinTotal.bedGraph4.gz wgEncodeRikenCageMinusClustersK562CytosolLongnonpolya.bedGraph4.gz wgEncodeRikenCageMinusClustersK562CytosolLongpolya.bedGraph4.gz wgEncodeRikenCageMinusClustersK562NucleolusTotal.bedGraph4.gz wgEncodeRikenCageMinusClustersK562NucleoplasmTotal.bedGraph4.gz wgEncodeRikenCageMinusClustersK562NucleusLongnonpolya.bedGraph4.gz wgEncodeRikenCageMinusClustersK562NucleusLongpolya.bedGraph4.gz wgEncodeRikenCageMinusClustersK562PolysomeLongnonpolya.bedGraph4.gz wgEncodeRikenCageMinusClustersProstateCellLongnonpolya.bedGraph4.gz wgEncodeRikenCagePlusClustersGm12878CytosolLongnonpolya.bedGraph4.gz wgEncodeRikenCagePlusClustersGm12878NucleusLongnonpolya.bedGraph4.gz wgEncodeRikenCagePlusClustersK562ChromatinTotal.bedGraph4.gz wgEncodeRikenCagePlusClustersK562CytosolLongnonpolya.bedGraph4.gz wgEncodeRikenCagePlusClustersK562CytosolLongpolya.bedGraph4.gz wgEncodeRikenCagePlusClustersK562NucleolusTotal.bedGraph4.gz wgEncodeRikenCagePlusClustersK562NucleoplasmTotal.bedGraph4.gz wgEncodeRikenCagePlusClustersK562NucleusLongnonpolya.bedGraph4.gz wgEncodeRikenCagePlusClustersK562NucleusLongpolya.bedGraph4.gz wgEncodeRikenCagePlusClustersK562PolysomeLongnonpolya.bedGraph4.gz wgEncodeRikenCagePlusClustersProstateCellLongnonpolya.bedGraph4.gz wgEncodeRikenCageRawData2K562CytosolLongnonpolya.csqual.gz wgEncodeRikenCageRawData2K562NucleusLongnonpolya.csqual.gz wgEncodeRikenCageRawData2ProstateCellLongnonpolya.csqual.gz wgEncodeRikenCageRawDataGm12878CytosolLongnonpolya.fastq.gz wgEncodeRikenCageRawDataGm12878NucleusLongnonpolya.fastq.gz wgEncodeRikenCageRawDataK562ChromatinTotal.fastq.gz wgEncodeRikenCageRawDataK562CytosolLongnonpolya.csfasta.gz wgEncodeRikenCageRawDataK562CytosolLongpolya.fastq.gz wgEncodeRikenCageRawDataK562NucleolusTotal.fastq.gz wgEncodeRikenCageRawDataK562NucleoplasmTotal.fastq.gz wgEncodeRikenCageRawDataK562NucleusLongnonpolya.csfasta.gz wgEncodeRikenCageRawDataK562NucleusLongpolya.fastq.gz wgEncodeRikenCageRawDataK562PolysomeLongnonpolya.fastq.gz wgEncodeRikenCageRawDataProstateCellLongnonpolya.csfasta.gz E) New tables: E.a) New tables : 24 wgEncodeRikenCageAlignmentsGm12878NucleolusTotal wgEncodeRikenCageAlignmentsH1hescCellLongnonpolya wgEncodeRikenCageAlignmentsHepg2CytosolLongnonpolya wgEncodeRikenCageAlignmentsHepg2NucleolusTotal wgEncodeRikenCageAlignmentsHepg2NucleusLongnonpolya wgEncodeRikenCageAlignmentsHuvecCytosolLongnonpolya wgEncodeRikenCageAlignmentsNhekCytosolLongnonpolya wgEncodeRikenCageAlignmentsNhekNucleusLongnonpolya wgEncodeRikenCageMinusClustersGm12878NucleolusTotal wgEncodeRikenCageMinusClustersH1hescCellLongnonpolya wgEncodeRikenCageMinusClustersHepg2CytosolLongnonpolya wgEncodeRikenCageMinusClustersHepg2NucleolusTotal wgEncodeRikenCageMinusClustersHepg2NucleusLongnonpolya wgEncodeRikenCageMinusClustersHuvecCytosolLongnonpolya wgEncodeRikenCageMinusClustersNhekCytosolLongnonpolya wgEncodeRikenCageMinusClustersNhekNucleusLongnonpolya wgEncodeRikenCagePlusClustersGm12878NucleolusTotal wgEncodeRikenCagePlusClustersH1hescCellLongnonpolya wgEncodeRikenCagePlusClustersHepg2CytosolLongnonpolya wgEncodeRikenCagePlusClustersHepg2NucleolusTotal wgEncodeRikenCagePlusClustersHepg2NucleusLongnonpolya wgEncodeRikenCagePlusClustersHuvecCytosolLongnonpolya wgEncodeRikenCagePlusClustersNhekCytosolLongnonpolya wgEncodeRikenCagePlusClustersNhekNucleusLongnonpolya E.b) New files: 32 /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeRikenCage/wgEncodeRikenCageAlignmentsGm12878NucleolusTotal.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeRikenCage/wgEncodeRikenCageAlignmentsH1hescCellLongnonpolya.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeRikenCage/wgEncodeRikenCageAlignmentsHepg2CytosolLongnonpolya.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeRikenCage/wgEncodeRikenCageAlignmentsHepg2NucleolusTotal.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeRikenCage/wgEncodeRikenCageAlignmentsHepg2NucleusLongnonpolya.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeRikenCage/wgEncodeRikenCageAlignmentsHuvecCytosolLongnonpolya.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeRikenCage/wgEncodeRikenCageAlignmentsNhekCytosolLongnonpolya.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeRikenCage/wgEncodeRikenCageAlignmentsNhekNucleusLongnonpolya.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeRikenCage/wgEncodeRikenCageMinusClustersGm12878NucleolusTotal.bedGraph4.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeRikenCage/wgEncodeRikenCageMinusClustersH1hescCellLongnonpolya.bedGraph4.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeRikenCage/wgEncodeRikenCageMinusClustersHepg2CytosolLongnonpolya.bedGraph4.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeRikenCage/wgEncodeRikenCageMinusClustersHepg2NucleolusTotal.bedGraph4.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeRikenCage/wgEncodeRikenCageMinusClustersHepg2NucleusLongnonpolya.bedGraph4.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeRikenCage/wgEncodeRikenCageMinusClustersHuvecCytosolLongnonpolya.bedGraph4.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeRikenCage/wgEncodeRikenCageMinusClustersNhekCytosolLongnonpolya.bedGraph4.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeRikenCage/wgEncodeRikenCageMinusClustersNhekNucleusLongnonpolya.bedGraph4.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeRikenCage/wgEncodeRikenCagePlusClustersGm12878NucleolusTotal.bedGraph4.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeRikenCage/wgEncodeRikenCagePlusClustersH1hescCellLongnonpolya.bedGraph4.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeRikenCage/wgEncodeRikenCagePlusClustersHepg2CytosolLongnonpolya.bedGraph4.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeRikenCage/wgEncodeRikenCagePlusClustersHepg2NucleolusTotal.bedGraph4.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeRikenCage/wgEncodeRikenCagePlusClustersHepg2NucleusLongnonpolya.bedGraph4.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeRikenCage/wgEncodeRikenCagePlusClustersHuvecCytosolLongnonpolya.bedGraph4.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeRikenCage/wgEncodeRikenCagePlusClustersNhekCytosolLongnonpolya.bedGraph4.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeRikenCage/wgEncodeRikenCagePlusClustersNhekNucleusLongnonpolya.bedGraph4.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeRikenCage/wgEncodeRikenCageRawData3Gm12878NucleolusTotal.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeRikenCage/wgEncodeRikenCageRawData3H1hescCellLongnonpolya.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeRikenCage/wgEncodeRikenCageRawData3Hepg2CytosolLongnonpolya.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeRikenCage/wgEncodeRikenCageRawData3Hepg2NucleolusTotal.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeRikenCage/wgEncodeRikenCageRawData3Hepg2NucleusLongnonpolya.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeRikenCage/wgEncodeRikenCageRawData3HuvecCytosolLongnonpolya.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeRikenCage/wgEncodeRikenCageRawData3NhekCytosolLongnonpolya.fastq.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeRikenCage/wgEncodeRikenCageRawData3NhekNucleusLongnonpolya.fastq.gz