This is a release2 of the "ENCODE WU DGF" The composite track is wgEncodeUwDGF Categories of tables and files('): A) Untouched - are on public browser and should remain B) Deprecated - are currently on RR but will no longer be needed and should not be referenced by the public site. NOTE: NO FILES SHOULD BE REMOVED from the downloads directory on hgdownloads (RR). This list is provided for completeness. Any files marked here as in gbdb may be eliminated. C) New - are only currently on test but will need to be pushed to the RR. D) Additional items of note A) Untouched Tables (12): wgEncodeUwDGFHotspotsHepg2 wgEncodeUwDGFHotspotsSknshra wgEncodeUwDGFHotspotsTh1 wgEncodeUwDGFPeaksHepg2 wgEncodeUwDGFPeaksSknshra wgEncodeUwDGFPeaksTh1 wgEncodeUwDGFRawSignalHepg2 wgEncodeUwDGFRawSignalSknshra wgEncodeUwDGFRawSignalTh1 wgEncodeUwDGFSignalHepg2 wgEncodeUwDGFSignalSknshra wgEncodeUwDGFSignalTh1 A') Untouched Files (18 downloadables, 3 wibs): current location on alpha: /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDGF/release2/ on RR: {...}/goldenPath/encodeDCC/wgEncodeUwDGF/ wgEncodeUwDGFAlignmentsHepg2.tagAlign.gz wgEncodeUwDGFAlignmentsSknshra.tagAlign.gz wgEncodeUwDGFAlignmentsTh1.tagAlign.gz wgEncodeUwDGFHotspotsHepg2.broadPeak.gz wgEncodeUwDGFHotspotsSknshra.broadPeak.gz wgEncodeUwDGFHotspotsTh1.broadPeak.gz wgEncodeUwDGFPeaksHepg2.narrowPeak.gz wgEncodeUwDGFPeaksSknshra.narrowPeak.gz wgEncodeUwDGFPeaksTh1.narrowPeak.gz wgEncodeUwDGFRawDataHepg2.fastq.gz wgEncodeUwDGFRawDataSknshra.fastq.gz wgEncodeUwDGFRawDataTh1.fastq.gz wgEncodeUwDGFRawSignalHepg2.wig.gz wgEncodeUwDGFRawSignalSknshra.wig.gz wgEncodeUwDGFRawSignalTh1.wig.gz wgEncodeUwDGFSignalHepg2.bedGraph4.gz wgEncodeUwDGFSignalSknshra.bedGraph4.gz wgEncodeUwDGFSignalTh1.bedGraph4.gz /gbdb/hg18/wib/wgEncodeUwDGFRawSignalHepg2.wib /gbdb/hg18/wib/wgEncodeUwDGFRawSignalSknshra.wib /gbdb/hg18/wib/wgEncodeUwDGFRawSignalTh1.wib B) Deprecated tables (0): B') Deprecated files (0 downloadables, 0 wibs): NOTE: NO FILES SHOULD BE REMOVED from the downloads directory on hgdownloads (RR). This list is provided for completeness. Any files marked here as in gbdb may be eliminated. current location on alpha: /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDGF/release1/ on RR: {...}/goldenPath/encodeDCC/wgEncodeUwDGF/ C) New tables (8): wgEncodeUwDGFHotspotsGm06990 wgEncodeUwDGFHotspotsK562 wgEncodeUwDGFPeaksGm06990 wgEncodeUwDGFPeaksK562 wgEncodeUwDGFRawSignalGm06990 wgEncodeUwDGFRawSignalK562 wgEncodeUwDGFSignalGm06990 wgEncodeUwDGFSignalK562 C') New files (10 downloadables, 2 wibs): current location on alpha: /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDGF/release2/ NOT on RR but must be placed in: {...}/goldenPath/encodeDCC/wgEncodeUwDGF/ /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDGF/release2/wgEncodeUwDGFAlignmentsGm06990.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDGF/release2/wgEncodeUwDGFAlignmentsK562.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDGF/release2/wgEncodeUwDGFHotspotsGm06990.broadPeak.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDGF/release2/wgEncodeUwDGFHotspotsK562.broadPeak.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDGF/release2/wgEncodeUwDGFPeaksGm06990.narrowPeak.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDGF/release2/wgEncodeUwDGFPeaksK562.narrowPeak.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDGF/release2/wgEncodeUwDGFRawSignalGm06990.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDGF/release2/wgEncodeUwDGFRawSignalK562.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDGF/release2/wgEncodeUwDGFSignalGm06990.bedGraph4.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDGF/release2/wgEncodeUwDGFSignalK562.bedGraph4.gz /gbdb/hg18/wib/wgEncodeUwDGFRawSignalGm06990.wib /gbdb/hg18/wib/wgEncodeUwDGFRawSignalK562.wib D) Additional items: current location on alpha: /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDGF/release2/ should be placed on the RR in (overwritting any existing copy): {...}/goldenPath/encodeDCC/wgEncodeUwDGF/ index.html files.txt md5sum.txt