This is a second release of the "ENCODE UW DNase track" The composite track is wgEncodeUwDnaseSeq Categories of tables and files: A) Untouched - are on public browser and shall remain 66 tables, 110 files B) Elmininated - are currently on RR but will no longer be needed and should not be referenced by the public site See "Replced" and remove 9 tables, 0 files, 3 wibs C) Replaced - are on public browser but will be replaced by something with another name (nothing should be replace by something with the same name) 9 tables, 15 files, 3 wibs D) Versioned (replacing) - are only currently on test but will need to be pushed to RR as replacements for existing datasets (with a different name) 9 tables, 15 files, 3 wibs E) New - are only currently on test but will need to be pushed to the RR. 42 tables, 70 files, 14 wibs F) Additional items of note A) Untouched A.a) Untouched tables: 66 wgEncodeUwDnaseSeqHotspotsRep1Bjtert wgEncodeUwDnaseSeqHotspotsRep1Caco2 wgEncodeUwDnaseSeqHotspotsRep1Gm06990 wgEncodeUwDnaseSeqHotspotsRep1Gm12878 wgEncodeUwDnaseSeqHotspotsRep1Helas3 wgEncodeUwDnaseSeqHotspotsRep1Hepg2 wgEncodeUwDnaseSeqHotspotsRep1Hrcepic wgEncodeUwDnaseSeqHotspotsRep1Hre wgEncodeUwDnaseSeqHotspotsRep1Huvec wgEncodeUwDnaseSeqHotspotsRep1K562 wgEncodeUwDnaseSeqHotspotsRep1Sknshra wgEncodeUwDnaseSeqHotspotsRep1Th1 wgEncodeUwDnaseSeqHotspotsRep1Th2 wgEncodeUwDnaseSeqHotspotsRep2Bjtert wgEncodeUwDnaseSeqHotspotsRep2Caco2 wgEncodeUwDnaseSeqHotspotsRep2Gm06990 wgEncodeUwDnaseSeqHotspotsRep2Gm12878 wgEncodeUwDnaseSeqHotspotsRep2Helas3 wgEncodeUwDnaseSeqHotspotsRep2Hepg2 wgEncodeUwDnaseSeqHotspotsRep2Hrcepic wgEncodeUwDnaseSeqHotspotsRep2Hre wgEncodeUwDnaseSeqHotspotsRep2K562 wgEncodeUwDnaseSeqPeaksRep1Bjtert wgEncodeUwDnaseSeqPeaksRep1Caco2 wgEncodeUwDnaseSeqPeaksRep1Gm06990 wgEncodeUwDnaseSeqPeaksRep1Gm12878 wgEncodeUwDnaseSeqPeaksRep1Helas3 wgEncodeUwDnaseSeqPeaksRep1Hepg2 wgEncodeUwDnaseSeqPeaksRep1Hrcepic wgEncodeUwDnaseSeqPeaksRep1Hre wgEncodeUwDnaseSeqPeaksRep1Huvec wgEncodeUwDnaseSeqPeaksRep1K562 wgEncodeUwDnaseSeqPeaksRep1Sknshra wgEncodeUwDnaseSeqPeaksRep1Th1 wgEncodeUwDnaseSeqPeaksRep1Th2 wgEncodeUwDnaseSeqPeaksRep2Bjtert wgEncodeUwDnaseSeqPeaksRep2Caco2 wgEncodeUwDnaseSeqPeaksRep2Gm06990 wgEncodeUwDnaseSeqPeaksRep2Gm12878 wgEncodeUwDnaseSeqPeaksRep2Helas3 wgEncodeUwDnaseSeqPeaksRep2Hepg2 wgEncodeUwDnaseSeqPeaksRep2Hrcepic wgEncodeUwDnaseSeqPeaksRep2Hre wgEncodeUwDnaseSeqPeaksRep2K562 wgEncodeUwDnaseSeqRawSignalRep1Bjtert wgEncodeUwDnaseSeqRawSignalRep1Caco2 wgEncodeUwDnaseSeqRawSignalRep1Gm06990 wgEncodeUwDnaseSeqRawSignalRep1Gm12878 wgEncodeUwDnaseSeqRawSignalRep1Helas3 wgEncodeUwDnaseSeqRawSignalRep1Hepg2 wgEncodeUwDnaseSeqRawSignalRep1Hrcepic wgEncodeUwDnaseSeqRawSignalRep1Hre wgEncodeUwDnaseSeqRawSignalRep1Huvec wgEncodeUwDnaseSeqRawSignalRep1K562 wgEncodeUwDnaseSeqRawSignalRep1Sknshra wgEncodeUwDnaseSeqRawSignalRep1Th1 wgEncodeUwDnaseSeqRawSignalRep1Th2 wgEncodeUwDnaseSeqRawSignalRep2Bjtert wgEncodeUwDnaseSeqRawSignalRep2Caco2 wgEncodeUwDnaseSeqRawSignalRep2Gm06990 wgEncodeUwDnaseSeqRawSignalRep2Gm12878 wgEncodeUwDnaseSeqRawSignalRep2Helas3 wgEncodeUwDnaseSeqRawSignalRep2Hepg2 wgEncodeUwDnaseSeqRawSignalRep2Hrcepic wgEncodeUwDnaseSeqRawSignalRep2Hre wgEncodeUwDnaseSeqRawSignalRep2K562 A.b) Untouched files: 110 wgEncodeUwDnaseSeqAlignmentsRep1Bjtert.tagAlign.gz wgEncodeUwDnaseSeqAlignmentsRep1Caco2.tagAlign.gz wgEncodeUwDnaseSeqAlignmentsRep1Gm06990.tagAlign.gz wgEncodeUwDnaseSeqAlignmentsRep1Gm12878.tagAlign.gz wgEncodeUwDnaseSeqAlignmentsRep1Helas3.tagAlign.gz wgEncodeUwDnaseSeqAlignmentsRep1Hepg2.tagAlign.gz wgEncodeUwDnaseSeqAlignmentsRep1Hrcepic.tagAlign.gz wgEncodeUwDnaseSeqAlignmentsRep1Hre.tagAlign.gz wgEncodeUwDnaseSeqAlignmentsRep1Huvec.tagAlign.gz wgEncodeUwDnaseSeqAlignmentsRep1K562.tagAlign.gz wgEncodeUwDnaseSeqAlignmentsRep1Sknshra.tagAlign.gz wgEncodeUwDnaseSeqAlignmentsRep1Th1.tagAlign.gz wgEncodeUwDnaseSeqAlignmentsRep1Th2.tagAlign.gz wgEncodeUwDnaseSeqAlignmentsRep2Bjtert.tagAlign.gz wgEncodeUwDnaseSeqAlignmentsRep2Caco2.tagAlign.gz wgEncodeUwDnaseSeqAlignmentsRep2Gm06990.tagAlign.gz wgEncodeUwDnaseSeqAlignmentsRep2Gm12878.tagAlign.gz wgEncodeUwDnaseSeqAlignmentsRep2Helas3.tagAlign.gz wgEncodeUwDnaseSeqAlignmentsRep2Hepg2.tagAlign.gz wgEncodeUwDnaseSeqAlignmentsRep2Hrcepic.tagAlign.gz wgEncodeUwDnaseSeqAlignmentsRep2Hre.tagAlign.gz wgEncodeUwDnaseSeqAlignmentsRep2K562.tagAlign.gz wgEncodeUwDnaseSeqHotspotsRep1Bjtert.broadPeak.gz wgEncodeUwDnaseSeqHotspotsRep1Caco2.broadPeak.gz wgEncodeUwDnaseSeqHotspotsRep1Gm06990.broadPeak.gz wgEncodeUwDnaseSeqHotspotsRep1Gm12878.broadPeak.gz wgEncodeUwDnaseSeqHotspotsRep1Helas3.broadPeak.gz wgEncodeUwDnaseSeqHotspotsRep1Hepg2.broadPeak.gz wgEncodeUwDnaseSeqHotspotsRep1Hrcepic.broadPeak.gz wgEncodeUwDnaseSeqHotspotsRep1Hre.broadPeak.gz wgEncodeUwDnaseSeqHotspotsRep1Huvec.broadPeak.gz wgEncodeUwDnaseSeqHotspotsRep1K562.broadPeak.gz wgEncodeUwDnaseSeqHotspotsRep1Sknshra.broadPeak.gz wgEncodeUwDnaseSeqHotspotsRep1Th1.broadPeak.gz wgEncodeUwDnaseSeqHotspotsRep1Th2.broadPeak.gz wgEncodeUwDnaseSeqHotspotsRep2Bjtert.broadPeak.gz wgEncodeUwDnaseSeqHotspotsRep2Caco2.broadPeak.gz wgEncodeUwDnaseSeqHotspotsRep2Gm06990.broadPeak.gz wgEncodeUwDnaseSeqHotspotsRep2Gm12878.broadPeak.gz wgEncodeUwDnaseSeqHotspotsRep2Helas3.broadPeak.gz wgEncodeUwDnaseSeqHotspotsRep2Hepg2.broadPeak.gz wgEncodeUwDnaseSeqHotspotsRep2Hrcepic.broadPeak.gz wgEncodeUwDnaseSeqHotspotsRep2Hre.broadPeak.gz wgEncodeUwDnaseSeqHotspotsRep2K562.broadPeak.gz wgEncodeUwDnaseSeqPeaksRep1Bjtert.narrowPeak.gz wgEncodeUwDnaseSeqPeaksRep1Caco2.narrowPeak.gz wgEncodeUwDnaseSeqPeaksRep1Gm06990.narrowPeak.gz wgEncodeUwDnaseSeqPeaksRep1Gm12878.narrowPeak.gz wgEncodeUwDnaseSeqPeaksRep1Helas3.narrowPeak.gz wgEncodeUwDnaseSeqPeaksRep1Hepg2.narrowPeak.gz wgEncodeUwDnaseSeqPeaksRep1Hrcepic.narrowPeak.gz wgEncodeUwDnaseSeqPeaksRep1Hre.narrowPeak.gz wgEncodeUwDnaseSeqPeaksRep1Huvec.narrowPeak.gz wgEncodeUwDnaseSeqPeaksRep1K562.narrowPeak.gz wgEncodeUwDnaseSeqPeaksRep1Sknshra.narrowPeak.gz wgEncodeUwDnaseSeqPeaksRep1Th1.narrowPeak.gz wgEncodeUwDnaseSeqPeaksRep1Th2.narrowPeak.gz wgEncodeUwDnaseSeqPeaksRep2Bjtert.narrowPeak.gz wgEncodeUwDnaseSeqPeaksRep2Caco2.narrowPeak.gz wgEncodeUwDnaseSeqPeaksRep2Gm06990.narrowPeak.gz wgEncodeUwDnaseSeqPeaksRep2Gm12878.narrowPeak.gz wgEncodeUwDnaseSeqPeaksRep2Helas3.narrowPeak.gz wgEncodeUwDnaseSeqPeaksRep2Hepg2.narrowPeak.gz wgEncodeUwDnaseSeqPeaksRep2Hrcepic.narrowPeak.gz wgEncodeUwDnaseSeqPeaksRep2Hre.narrowPeak.gz wgEncodeUwDnaseSeqPeaksRep2K562.narrowPeak.gz wgEncodeUwDnaseSeqRawDataRep1Bjtert.fastq.gz wgEncodeUwDnaseSeqRawDataRep1Caco2.fastq.gz wgEncodeUwDnaseSeqRawDataRep1Gm06990.fastq.gz wgEncodeUwDnaseSeqRawDataRep1Gm12878.fastq.gz wgEncodeUwDnaseSeqRawDataRep1Helas3.fastq.gz wgEncodeUwDnaseSeqRawDataRep1Hepg2.fastq.gz wgEncodeUwDnaseSeqRawDataRep1Hrcepic.fastq.gz wgEncodeUwDnaseSeqRawDataRep1Hre.fastq.gz wgEncodeUwDnaseSeqRawDataRep1Huvec.fastq.gz wgEncodeUwDnaseSeqRawDataRep1K562.fastq.gz wgEncodeUwDnaseSeqRawDataRep1Sknshra.fastq.gz wgEncodeUwDnaseSeqRawDataRep1Th1.fastq.gz wgEncodeUwDnaseSeqRawDataRep1Th2.fastq.gz wgEncodeUwDnaseSeqRawDataRep2Bjtert.fastq.gz wgEncodeUwDnaseSeqRawDataRep2Caco2.fastq.gz wgEncodeUwDnaseSeqRawDataRep2Gm06990.fastq.gz wgEncodeUwDnaseSeqRawDataRep2Gm12878.fastq.gz wgEncodeUwDnaseSeqRawDataRep2Helas3.fastq.gz wgEncodeUwDnaseSeqRawDataRep2Hepg2.fastq.gz wgEncodeUwDnaseSeqRawDataRep2Hrcepic.fastq.gz wgEncodeUwDnaseSeqRawDataRep2Hre.fastq.gz wgEncodeUwDnaseSeqRawDataRep2K562.fastq.gz wgEncodeUwDnaseSeqRawSignalRep1Bjtert.wig.gz wgEncodeUwDnaseSeqRawSignalRep1Caco2.wig.gz wgEncodeUwDnaseSeqRawSignalRep1Gm06990.wig.gz wgEncodeUwDnaseSeqRawSignalRep1Gm12878.wig.gz wgEncodeUwDnaseSeqRawSignalRep1Helas3.wig.gz wgEncodeUwDnaseSeqRawSignalRep1Hepg2.wig.gz wgEncodeUwDnaseSeqRawSignalRep1Hrcepic.wig.gz wgEncodeUwDnaseSeqRawSignalRep1Hre.wig.gz wgEncodeUwDnaseSeqRawSignalRep1Huvec.wig.gz wgEncodeUwDnaseSeqRawSignalRep1K562.wig.gz wgEncodeUwDnaseSeqRawSignalRep1Sknshra.wig.gz wgEncodeUwDnaseSeqRawSignalRep1Th1.wig.gz wgEncodeUwDnaseSeqRawSignalRep1Th2.wig.gz wgEncodeUwDnaseSeqRawSignalRep2Bjtert.wig.gz wgEncodeUwDnaseSeqRawSignalRep2Caco2.wig.gz wgEncodeUwDnaseSeqRawSignalRep2Gm06990.wig.gz wgEncodeUwDnaseSeqRawSignalRep2Gm12878.wig.gz wgEncodeUwDnaseSeqRawSignalRep2Helas3.wig.gz wgEncodeUwDnaseSeqRawSignalRep2Hepg2.wig.gz wgEncodeUwDnaseSeqRawSignalRep2Hrcepic.wig.gz wgEncodeUwDnaseSeqRawSignalRep2Hre.wig.gz wgEncodeUwDnaseSeqRawSignalRep2K562.wig.gz B) Elmininated C.a) Eliminated tables: 9 ( See "Replaced" and remove those ) C.a) Eliminated files: 0 (do not remove replaced files) C.a) Eliminated wibs: 3 ( See "Replaced" and remove those ) C) Replaced C.a) Replaced tables: 9 ( should be removed from RR ) wgEncodeUwDnaseSeqHotspotsRep1Hl60 wgEncodeUwDnaseSeqHotspotsRep2Sknshra wgEncodeUwDnaseSeqHotspotsRep1Skmc wgEncodeUwDnaseSeqPeaksRep1Hl60 wgEncodeUwDnaseSeqPeaksRep2Sknshra wgEncodeUwDnaseSeqPeaksRep1Skmc wgEncodeUwDnaseSeqRawSignalRep1Hl60 wgEncodeUwDnaseSeqRawSignalRep2Sknshra wgEncodeUwDnaseSeqRawSignalRep1Skmc C.b) Replaced files: 15 wgEncodeUwDnaseSeqAlignmentsRep1Hl60.tagAlign.gz wgEncodeUwDnaseSeqHotspotsRep1Hl60.broadPeak.gz wgEncodeUwDnaseSeqPeaksRep1Hl60.narrowPeak.gz wgEncodeUwDnaseSeqRawDataRep1Hl60.fastq.gz wgEncodeUwDnaseSeqRawSignalRep1Hl60.wig.gz wgEncodeUwDnaseSeqAlignmentsRep2Sknshra.tagAlign.gz wgEncodeUwDnaseSeqHotspotsRep2Sknshra.broadPeak.gz wgEncodeUwDnaseSeqPeaksRep2Sknshra.narrowPeak.gz wgEncodeUwDnaseSeqRawDataRep2Sknshra.fastq.gz wgEncodeUwDnaseSeqRawSignalRep2Sknshra.wig.gz wgEncodeUwDnaseSeqAlignmentsRep1Skmc.tagAlign.gz wgEncodeUwDnaseSeqHotspotsRep1Skmc.broadPeak.gz wgEncodeUwDnaseSeqPeaksRep1Skmc.narrowPeak.gz wgEncodeUwDnaseSeqRawDataRep1Skmc.fastq.gz wgEncodeUwDnaseSeqRawSignalRep1Skmc.wig.gz C.c) Replaced wibs: 3 ( should be removed from RR ) /gbdb/hg18/wib/wgEncodeUwDnaseSeqRawSignalRep1Hl60.wib /gbdb/hg18/wib/wgEncodeUwDnaseSeqRawSignalRep2Sknshra.wib /gbdb/hg18/wib/wgEncodeUwDnaseSeqRawSignalRep1Skmc.wib D) Versioned: D.a) Versioned tables (replacing): 9 wgEncodeUwDnaseSeqHotspotsRep1Hl60V2 ( wgEncodeUwDnaseSeqHotspotsRep1Hl60 ) wgEncodeUwDnaseSeqHotspotsRep2SknshraV2 ( wgEncodeUwDnaseSeqHotspotsRep2Sknshra ) wgEncodeUwDnaseSeqHotspotsRep1SkmcV2 ( wgEncodeUwDnaseSeqHotspotsRep1Skmc ) wgEncodeUwDnaseSeqPeaksRep1Hl60V2 ( wgEncodeUwDnaseSeqPeaksRep1Hl60 ) wgEncodeUwDnaseSeqPeaksRep2SknshraV2 ( wgEncodeUwDnaseSeqPeaksRep2Sknshra ) wgEncodeUwDnaseSeqPeaksRep1SkmcV2 ( wgEncodeUwDnaseSeqPeaksRep1Skmc ) wgEncodeUwDnaseSeqRawSignalRep1Hl60V2 ( wgEncodeUwDnaseSeqRawSignalRep1Hl60 ) wgEncodeUwDnaseSeqRawSignalRep2SknshraV2 ( wgEncodeUwDnaseSeqRawSignalRep2Sknshra ) wgEncodeUwDnaseSeqRawSignalRep1SkmcV2 ( wgEncodeUwDnaseSeqRawSignalRep1Skmc ) D.b) Versioned files (replacing): 15 current location on alpha: /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/ NOT yet on RR: (but to be put in htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/) /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqAlignmentsRep1Hl60V2.tagAlign.gz ( release1/wgEncodeUwDnaseSeqAlignmentsRep1Hl60.tagAlign.gz ) /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqAlignmentsRep2SknshraV2.tagAlign.gz ( release1/wgEncodeUwDnaseSeqAlignmentsRep2Sknshra.tagAlign.gz ) /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqAlignmentsRep1SkmcV2.tagAlign.gz ( release1/wgEncodeUwDnaseSeqAlignmentsRep1Skmc.tagAlign.gz ) /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqHotspotsRep1Hl60V2.broadPeak.gz ( release1/wgEncodeUwDnaseSeqHotspotsRep1Hl60.broadPeak.gz ) /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqHotspotsRep2SknshraV2.broadPeak.gz ( release1/wgEncodeUwDnaseSeqHotspotsRep2Sknshra.broadPeak.gz ) /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqHotspotsRep1SkmcV2.broadPeak.gz ( release1/wgEncodeUwDnaseSeqHotspotsRep1Skmc.broadPeak.gz ) /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqPeaksRep1Hl60V2.narrowPeak.gz ( release1/wgEncodeUwDnaseSeqPeaksRep1Hl60.narrowPeak.gz ) /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqPeaksRep2SknshraV2.narrowPeak.gz ( release1/wgEncodeUwDnaseSeqPeaksRep2Sknshra.narrowPeak.gz ) /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqPeaksRep1SkmcV2.narrowPeak.gz ( release1/wgEncodeUwDnaseSeqPeaksRep1Skmc.narrowPeak.gz ) /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqRawDataRep1Hl60V2.fastq.gz ( release1/wgEncodeUwDnaseSeqRawDataRep1Hl60.fastq.gz ) /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqRawDataRep2SknshraV2.fastq.gz ( release1/wgEncodeUwDnaseSeqRawDataRep2Sknshra.fastq.gz ) /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqRawDataRep1SkmcV2.fastq.gz ( release1/wgEncodeUwDnaseSeqRawDataRep1Skmc.fastq.gz ) /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqRawSignalRep1Hl60V2.wig.gz ( release1/wgEncodeUwDnaseSeqRawSignalRep1Hl60.wig.gz ) /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqRawSignalRep2SknshraV2.wig.gz ( release1/wgEncodeUwDnaseSeqRawSignalRep2Sknshra.wig.gz ) /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqRawSignalRep1SkmcV2.wig.gz ( release1/wgEncodeUwDnaseSeqRawSignalRep1Skmc.wig.gz ) D.c) Versioned wibs (replacing): 3 /gbdb/hg18/wib/wgEncodeUwDnaseSeqRawSignalRep1Hl60V2.wib ( /gbdb/hg18/wib/wgEncodeUwDnaseSeqRawSignalRep1Hl60.wib ) /gbdb/hg18/wib/wgEncodeUwDnaseSeqRawSignalRep2SknshraV2.wib ( /gbdb/hg18/wib/wgEncodeUwDnaseSeqRawSignalRep2Sknshra.wib ) /gbdb/hg18/wib/wgEncodeUwDnaseSeqRawSignalRep1SkmcV2.wib ( /gbdb/hg18/wib/wgEncodeUwDnaseSeqRawSignalRep1Skmc.wib ) E) New tables: E.a) New tables: 42 wgEncodeUwDnaseSeqHotspotsRep1H1es wgEncodeUwDnaseSeqHotspotsRep1Hgf wgEncodeUwDnaseSeqHotspotsRep1Hmec wgEncodeUwDnaseSeqHotspotsRep1Jurkat wgEncodeUwDnaseSeqHotspotsRep1Mcf7 wgEncodeUwDnaseSeqHotspotsRep1Nb4 wgEncodeUwDnaseSeqHotspotsRep1Nhek wgEncodeUwDnaseSeqHotspotsRep1Panc1 wgEncodeUwDnaseSeqHotspotsRep1Saec wgEncodeUwDnaseSeqHotspotsRep2Hgf wgEncodeUwDnaseSeqHotspotsRep2Hl60 wgEncodeUwDnaseSeqHotspotsRep2Panc1 wgEncodeUwDnaseSeqHotspotsRep2Saec wgEncodeUwDnaseSeqHotspotsRep2Skmc wgEncodeUwDnaseSeqPeaksRep1H1es wgEncodeUwDnaseSeqPeaksRep1Hgf wgEncodeUwDnaseSeqPeaksRep1Hmec wgEncodeUwDnaseSeqPeaksRep1Jurkat wgEncodeUwDnaseSeqPeaksRep1Mcf7 wgEncodeUwDnaseSeqPeaksRep1Nb4 wgEncodeUwDnaseSeqPeaksRep1Nhek wgEncodeUwDnaseSeqPeaksRep1Panc1 wgEncodeUwDnaseSeqPeaksRep1Saec wgEncodeUwDnaseSeqPeaksRep2Hgf wgEncodeUwDnaseSeqPeaksRep2Hl60 wgEncodeUwDnaseSeqPeaksRep2Panc1 wgEncodeUwDnaseSeqPeaksRep2Saec wgEncodeUwDnaseSeqPeaksRep2Skmc wgEncodeUwDnaseSeqRawSignalRep1H1es wgEncodeUwDnaseSeqRawSignalRep1Hgf wgEncodeUwDnaseSeqRawSignalRep1Hmec wgEncodeUwDnaseSeqRawSignalRep1Jurkat wgEncodeUwDnaseSeqRawSignalRep1Mcf7 wgEncodeUwDnaseSeqRawSignalRep1Nb4 wgEncodeUwDnaseSeqRawSignalRep1Nhek wgEncodeUwDnaseSeqRawSignalRep1Panc1 wgEncodeUwDnaseSeqRawSignalRep1Saec wgEncodeUwDnaseSeqRawSignalRep2Hgf wgEncodeUwDnaseSeqRawSignalRep2Hl60 wgEncodeUwDnaseSeqRawSignalRep2Panc1 wgEncodeUwDnaseSeqRawSignalRep2Saec wgEncodeUwDnaseSeqRawSignalRep2Skmc E.b) New files: 70 current location on alpha: /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/ NOT yet on RR: (but to be put in htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/) /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqAlignmentsRep1H1es.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqAlignmentsRep1Hgf.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqAlignmentsRep1Hmec.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqAlignmentsRep1Jurkat.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqAlignmentsRep1Mcf7.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqAlignmentsRep1Nb4.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqAlignmentsRep1Nhek.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqAlignmentsRep1Panc1.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqAlignmentsRep1Saec.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqAlignmentsRep2Hgf.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqAlignmentsRep2Hl60.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqAlignmentsRep2Panc1.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqAlignmentsRep2Saec.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqAlignmentsRep2Skmc.tagAlign.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqHotspotsRep1H1es.broadPeak.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqHotspotsRep1Hgf.broadPeak.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqHotspotsRep1Hmec.broadPeak.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqHotspotsRep1Jurkat.broadPeak.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqHotspotsRep1Mcf7.broadPeak.gz 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/usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqRawSignalRep1Hgf.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqRawSignalRep1Hmec.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqRawSignalRep1Jurkat.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqRawSignalRep1Mcf7.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqRawSignalRep1Nb4.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqRawSignalRep1Nhek.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqRawSignalRep1Panc1.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqRawSignalRep1Saec.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqRawSignalRep2Hgf.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqRawSignalRep2Hl60.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqRawSignalRep2Panc1.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqRawSignalRep2Saec.wig.gz /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/wgEncodeUwDnaseSeqRawSignalRep2Skmc.wig.gz E.c) new wibs (hgwdev and alpha): 14 /gbdb/hg18/wib/wgEncodeUwDnaseSeqRawSignalRep1H1es.wib /gbdb/hg18/wib/wgEncodeUwDnaseSeqRawSignalRep1Hgf.wib /gbdb/hg18/wib/wgEncodeUwDnaseSeqRawSignalRep1Hmec.wib /gbdb/hg18/wib/wgEncodeUwDnaseSeqRawSignalRep1Jurkat.wib /gbdb/hg18/wib/wgEncodeUwDnaseSeqRawSignalRep1Mcf7.wib /gbdb/hg18/wib/wgEncodeUwDnaseSeqRawSignalRep1Nb4.wib /gbdb/hg18/wib/wgEncodeUwDnaseSeqRawSignalRep1Nhek.wib /gbdb/hg18/wib/wgEncodeUwDnaseSeqRawSignalRep1Panc1.wib /gbdb/hg18/wib/wgEncodeUwDnaseSeqRawSignalRep1Saec.wib /gbdb/hg18/wib/wgEncodeUwDnaseSeqRawSignalRep2Hgf.wib /gbdb/hg18/wib/wgEncodeUwDnaseSeqRawSignalRep2Hl60.wib /gbdb/hg18/wib/wgEncodeUwDnaseSeqRawSignalRep2Panc1.wib /gbdb/hg18/wib/wgEncodeUwDnaseSeqRawSignalRep2Saec.wib /gbdb/hg18/wib/wgEncodeUwDnaseSeqRawSignalRep2Skmc.wib F) Additional items: /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/index.html /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/files.txt /usr/local/apache/htdocs/goldenPath/hg18/encodeDCC/wgEncodeUwDnaseSeq/release2/md5sum.txt trackDb table ( o course )