# generated with encodeMkChangeNotes 0.9 This is a release1 of the "ENCODE wgEncodeGisRnaPet" The composite track is wgEncodeGisRnaPet Categories of tables and files('): A) Untouched - are on public browser and should remain B) Deprecated - are currently on RR but will no longer be needed and should not be referenced by the public site. NOTE: NO FILES SHOULD BE REMOVED from the downloads directory on hgdownloads (RR). This list is provided for completeness. Any files marked here as in gbdb may be eliminated. C) New - are only currently on test but will need to be pushed to the RR. D) Additional items of note Summary total counts for release1 (new+untouched): Tables: 84 Files: 148 Gbdbs: 84 A) Untouched Tables (0): A') Untouched Files (0 downloadables, 0 gbdbs): B) Deprecated tables (0): B') Deprecated files (0 downloadables, 0 gbdbs): C) New tables (84): wgEncodeGisRnaPetGm12878CytosolPapAlnFree wgEncodeGisRnaPetGm12878CytosolPapAlnRep1 wgEncodeGisRnaPetGm12878CytosolPapClustersFree wgEncodeGisRnaPetGm12878CytosolPapClustersRep1 wgEncodeGisRnaPetGm12878CytosolPapMinusRawSigFree wgEncodeGisRnaPetGm12878CytosolPapMinusRawSigRep1 wgEncodeGisRnaPetGm12878CytosolPapPlusRawSigFree wgEncodeGisRnaPetGm12878CytosolPapPlusRawSigRep1 wgEncodeGisRnaPetGm12878NucleusPapAlnRep1 wgEncodeGisRnaPetGm12878NucleusPapClustersRep1 wgEncodeGisRnaPetGm12878NucleusPapMinusRawSigRep1 wgEncodeGisRnaPetGm12878NucleusPapPlusRawSigRep1 wgEncodeGisRnaPetH1hescCellPapAlnRep1 wgEncodeGisRnaPetH1hescCellPapClustersRep1 wgEncodeGisRnaPetH1hescCellPapMinusRawRep1 wgEncodeGisRnaPetH1hescCellPapPlusRawRep1 wgEncodeGisRnaPetHelas3CellPapAlnRep1 wgEncodeGisRnaPetHelas3CellPapAlnRep2 wgEncodeGisRnaPetHelas3CellPapClustersRep1 wgEncodeGisRnaPetHelas3CellPapClustersRep2 wgEncodeGisRnaPetHelas3CellPapMinusRawRep1 wgEncodeGisRnaPetHelas3CellPapMinusRawRep2 wgEncodeGisRnaPetHelas3CellPapPlusRawRep1 wgEncodeGisRnaPetHelas3CellPapPlusRawRep2 wgEncodeGisRnaPetHelas3CytosolPapAlnRep1 wgEncodeGisRnaPetHelas3CytosolPapClustersRep1 wgEncodeGisRnaPetHelas3CytosolPapMinusRawRep1 wgEncodeGisRnaPetHelas3CytosolPapPlusRawRep1 wgEncodeGisRnaPetHelas3NucleusPapAlnRep1 wgEncodeGisRnaPetHelas3NucleusPapClustersRep1 wgEncodeGisRnaPetHelas3NucleusPapMinusRawRep1 wgEncodeGisRnaPetHelas3NucleusPapPlusRawRep1 wgEncodeGisRnaPetHepg2CytosolPapAlnRep1 wgEncodeGisRnaPetHepg2CytosolPapClustersRep1 wgEncodeGisRnaPetHepg2CytosolPapMinusRawSigRep1 wgEncodeGisRnaPetHepg2CytosolPapPlusRawSigRep1 wgEncodeGisRnaPetHepg2NucleusPapAlnRep1 wgEncodeGisRnaPetHepg2NucleusPapClustersRep1 wgEncodeGisRnaPetHepg2NucleusPapMinusRawSigRep1 wgEncodeGisRnaPetHepg2NucleusPapPlusRawSigRep1 wgEncodeGisRnaPetHuvecCytosolPapAlnRep1 wgEncodeGisRnaPetHuvecCytosolPapClustersRep1 wgEncodeGisRnaPetHuvecCytosolPapMinusRawRep1 wgEncodeGisRnaPetHuvecCytosolPapPlusRawRep1 wgEncodeGisRnaPetHuvecNucleusPapAlnRep1 wgEncodeGisRnaPetHuvecNucleusPapClustersRep1 wgEncodeGisRnaPetHuvecNucleusPapMinusRawRep1 wgEncodeGisRnaPetHuvecNucleusPapPlusRawRep1 wgEncodeGisRnaPetK562ChromatinTotalAlnRep1 wgEncodeGisRnaPetK562ChromatinTotalClustersRep1 wgEncodeGisRnaPetK562ChromatinTotalMinusRawSigRep1 wgEncodeGisRnaPetK562ChromatinTotalPlusRawSigRep1 wgEncodeGisRnaPetK562CytosolPapAlnRep1 wgEncodeGisRnaPetK562CytosolPapClustersRep1 wgEncodeGisRnaPetK562CytosolPapMinusRawRep1 wgEncodeGisRnaPetK562CytosolPapPlusRawRep1 wgEncodeGisRnaPetK562NucleolusTotalAlnRep1 wgEncodeGisRnaPetK562NucleolusTotalClustersRep1 wgEncodeGisRnaPetK562NucleolusTotalMinusRawSigRep1 wgEncodeGisRnaPetK562NucleolusTotalPlusRawSigRep1 wgEncodeGisRnaPetK562NucleoplasmTotalAlnRep1 wgEncodeGisRnaPetK562NucleoplasmTotalClustersRep1 wgEncodeGisRnaPetK562NucleoplasmTotalMinusRawSigRep1 wgEncodeGisRnaPetK562NucleoplasmTotalPlusRawSigRep1 wgEncodeGisRnaPetK562NucleusPapAlnRep1 wgEncodeGisRnaPetK562NucleusPapClustersRep1 wgEncodeGisRnaPetK562NucleusPapMinusRawSigRep1 wgEncodeGisRnaPetK562NucleusPapPlusRawSigRep1 wgEncodeGisRnaPetK562PolysomePapAlnRep1 wgEncodeGisRnaPetK562PolysomePapClustersRep1 wgEncodeGisRnaPetK562PolysomePapMinusRawSigRep1 wgEncodeGisRnaPetK562PolysomePapPlusRawSigRep1 wgEncodeGisRnaPetNhekCytosolPapAlnRep1 wgEncodeGisRnaPetNhekCytosolPapClustersRep1 wgEncodeGisRnaPetNhekCytosolPapMinusRawRep1 wgEncodeGisRnaPetNhekCytosolPapPlusRawRep1 wgEncodeGisRnaPetNhekNucleusPapAlnRep1 wgEncodeGisRnaPetNhekNucleusPapClustersRep1 wgEncodeGisRnaPetNhekNucleusPapMinusRawRep1 wgEncodeGisRnaPetNhekNucleusPapPlusRawRep1 wgEncodeGisRnaPetProstateCellPapAlnRep1 wgEncodeGisRnaPetProstateCellPapClustersRep1 wgEncodeGisRnaPetProstateCellPapMinusRawSigRep1 wgEncodeGisRnaPetProstateCellPapPlusRawSigRep1 C') New files (145 downloadables, 84 gbdbs): current location on alpha: /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/ NOT on RR but must be placed in: /usr/local/apache/htdocs/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/ /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetGm12878CytosolPapAlnFree.bam /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetGm12878CytosolPapAlnFree.bam.bai /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetGm12878CytosolPapAlnRep1.bam /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetGm12878CytosolPapAlnRep1.bam.bai /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetGm12878CytosolPapClustersFree.bed.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetGm12878CytosolPapClustersRep1.bed.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetGm12878CytosolPapFastqRd1Free.fastq.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetGm12878CytosolPapFastqRd1Rep1.fastq.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetGm12878CytosolPapFastqRd2Free.fastq.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetGm12878CytosolPapFastqRd2Rep1.fastq.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetGm12878CytosolPapMinusRawSigFree.bigWig /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetGm12878CytosolPapMinusRawSigRep1.bigWig /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetGm12878CytosolPapPlusRawSigFree.bigWig /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetGm12878CytosolPapPlusRawSigRep1.bigWig /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetGm12878NucleusPapAlnRep1.bam /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetGm12878NucleusPapAlnRep1.bam.bai /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetGm12878NucleusPapClustersRep1.bed.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetGm12878NucleusPapFastqRd1Rep1.fastq.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetGm12878NucleusPapFastqRd2Rep1.fastq.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetGm12878NucleusPapMinusRawSigRep1.bigWig /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetGm12878NucleusPapPlusRawSigRep1.bigWig /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetH1hescCellPapAlnRep1.bam /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetH1hescCellPapAlnRep1.bam.bai /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetH1hescCellPapClustersRep1.bed.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetH1hescCellPapFastqRd1Rep1.fastq.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetH1hescCellPapFastqRd2Rep1.fastq.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetH1hescCellPapMinusRawRep1.bigWig /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetH1hescCellPapPlusRawRep1.bigWig /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHelas3CellPapAlnRep1.bam /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHelas3CellPapAlnRep1.bam.bai /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHelas3CellPapAlnRep2.bam /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHelas3CellPapAlnRep2.bam.bai /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHelas3CellPapClustersRep1.bed.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHelas3CellPapClustersRep2.bed.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHelas3CellPapFastqRd1Rep1.fastq.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHelas3CellPapFastqRd1Rep2.fastq.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHelas3CellPapFastqRd2Rep1.fastq.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHelas3CellPapFastqRd2Rep2.fastq.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHelas3CellPapMinusRawRep1.bigWig /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHelas3CellPapMinusRawRep2.bigWig /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHelas3CellPapPlusRawRep1.bigWig /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHelas3CellPapPlusRawRep2.bigWig /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHelas3CytosolPapAlnRep1.bam /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHelas3CytosolPapAlnRep1.bam.bai /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHelas3CytosolPapClustersRep1.bed.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHelas3CytosolPapFastqRd1Rep1.fastq.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHelas3CytosolPapFastqRd2Rep1.fastq.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHelas3CytosolPapMinusRawRep1.bigWig /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHelas3CytosolPapPlusRawRep1.bigWig /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHelas3NucleusPapAlnRep1.bam /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHelas3NucleusPapAlnRep1.bam.bai /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHelas3NucleusPapClustersRep1.bed.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHelas3NucleusPapFastqRd1Rep1.fastq.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHelas3NucleusPapFastqRd2Rep1.fastq.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHelas3NucleusPapMinusRawRep1.bigWig /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHelas3NucleusPapPlusRawRep1.bigWig /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHepg2CytosolPapAlnRep1.bam /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHepg2CytosolPapAlnRep1.bam.bai /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHepg2CytosolPapClustersRep1.bed.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHepg2CytosolPapFastqRd1Rep1.fastq.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHepg2CytosolPapFastqRd2Rep1.fastq.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHepg2CytosolPapMinusRawSigRep1.bigWig /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHepg2CytosolPapPlusRawSigRep1.bigWig /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHepg2NucleusPapAlnRep1.bam /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHepg2NucleusPapAlnRep1.bam.bai /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHepg2NucleusPapClustersRep1.bed.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHepg2NucleusPapFastqRd1Rep1.fastq.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHepg2NucleusPapFastqRd2Rep1.fastq.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHepg2NucleusPapMinusRawSigRep1.bigWig /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHepg2NucleusPapPlusRawSigRep1.bigWig /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHuvecCytosolPapAlnRep1.bam /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHuvecCytosolPapAlnRep1.bam.bai /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHuvecCytosolPapClustersRep1.bed.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHuvecCytosolPapFastqRd1Rep1.fastq.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHuvecCytosolPapFastqRd2Rep1.fastq.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHuvecCytosolPapMinusRawRep1.bigWig /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHuvecCytosolPapPlusRawRep1.bigWig /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHuvecNucleusPapAlnRep1.bam /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHuvecNucleusPapAlnRep1.bam.bai /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHuvecNucleusPapClustersRep1.bed.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHuvecNucleusPapFastqRd1Rep1.fastq.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHuvecNucleusPapFastqRd2Rep1.fastq.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHuvecNucleusPapMinusRawRep1.bigWig /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetHuvecNucleusPapPlusRawRep1.bigWig /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetK562ChromatinTotalAlnRep1.bam /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetK562ChromatinTotalAlnRep1.bam.bai /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetK562ChromatinTotalClustersRep1.bed.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetK562ChromatinTotalFastqRep1.fastq.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetK562ChromatinTotalMinusRawSigRep1.bigWig /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetK562ChromatinTotalPlusRawSigRep1.bigWig /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetK562CytosolPapAlnRep1.bam /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetK562CytosolPapAlnRep1.bam.bai /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetK562CytosolPapClustersRep1.bed.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetK562CytosolPapFastqRd1Rep1.fastq.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetK562CytosolPapFastqRd2Rep1.fastq.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetK562CytosolPapMinusRawRep1.bigWig /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetK562CytosolPapPlusRawRep1.bigWig /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetK562NucleolusTotalAlnRep1.bam /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetK562NucleolusTotalAlnRep1.bam.bai /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetK562NucleolusTotalClustersRep1.bed.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetK562NucleolusTotalFastqRd1Rep1.fastq.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetK562NucleolusTotalFastqRd2Rep1.fastq.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetK562NucleolusTotalMinusRawSigRep1.bigWig /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetK562NucleolusTotalPlusRawSigRep1.bigWig /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetK562NucleoplasmTotalAlnRep1.bam /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetK562NucleoplasmTotalAlnRep1.bam.bai /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetK562NucleoplasmTotalClustersRep1.bed.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetK562NucleoplasmTotalFastqRep1.fastq.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetK562NucleoplasmTotalMinusRawSigRep1.bigWig /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetK562NucleoplasmTotalPlusRawSigRep1.bigWig /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetK562NucleusPapAlnRep1.bam /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetK562NucleusPapAlnRep1.bam.bai /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetK562NucleusPapClustersRep1.bed.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetK562NucleusPapFastqRd1Rep1.fastq.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetK562NucleusPapFastqRd2Rep1.fastq.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetK562NucleusPapMinusRawSigRep1.bigWig /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetK562NucleusPapPlusRawSigRep1.bigWig /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetK562PolysomePapAlnRep1.bam /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetK562PolysomePapAlnRep1.bam.bai /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetK562PolysomePapClustersRep1.bed.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetK562PolysomePapFastqRd1Rep1.fastq.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetK562PolysomePapFastqRd2Rep1.fastq.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetK562PolysomePapMinusRawSigRep1.bigWig /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetK562PolysomePapPlusRawSigRep1.bigWig /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetNhekCytosolPapAlnRep1.bam /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetNhekCytosolPapAlnRep1.bam.bai /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetNhekCytosolPapClustersRep1.bed.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetNhekCytosolPapFastqRd1Rep1.fastq.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetNhekCytosolPapFastqRd2Rep1.fastq.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetNhekCytosolPapMinusRawRep1.bigWig /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetNhekCytosolPapPlusRawRep1.bigWig /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetNhekNucleusPapAlnRep1.bam /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetNhekNucleusPapAlnRep1.bam.bai /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetNhekNucleusPapClustersRep1.bed.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetNhekNucleusPapFastqRd1Rep1.fastq.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetNhekNucleusPapFastqRd2Rep1.fastq.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetNhekNucleusPapMinusRawRep1.bigWig /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetNhekNucleusPapPlusRawRep1.bigWig /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetProstateCellPapAlnRep1.bam /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetProstateCellPapAlnRep1.bam.bai /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetProstateCellPapClustersRep1.bed.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetProstateCellPapFastqRd1Rep1.fastq.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetProstateCellPapFastqRd2Rep1.fastq.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetProstateCellPapMinusRawSigRep1.bigWig /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/wgEncodeGisRnaPetProstateCellPapPlusRawSigRep1.bigWig /gbdb/hg19/bbi/wgEncodeGisRnaPetGm12878CytosolPapAlnFree.bam /gbdb/hg19/bbi/wgEncodeGisRnaPetGm12878CytosolPapAlnFree.bam.bai /gbdb/hg19/bbi/wgEncodeGisRnaPetGm12878CytosolPapAlnRep1.bam /gbdb/hg19/bbi/wgEncodeGisRnaPetGm12878CytosolPapAlnRep1.bam.bai /gbdb/hg19/bbi/wgEncodeGisRnaPetGm12878CytosolPapMinusRawSigFree.bigWig /gbdb/hg19/bbi/wgEncodeGisRnaPetGm12878CytosolPapMinusRawSigRep1.bigWig /gbdb/hg19/bbi/wgEncodeGisRnaPetGm12878CytosolPapPlusRawSigFree.bigWig /gbdb/hg19/bbi/wgEncodeGisRnaPetGm12878CytosolPapPlusRawSigRep1.bigWig /gbdb/hg19/bbi/wgEncodeGisRnaPetGm12878NucleusPapAlnRep1.bam /gbdb/hg19/bbi/wgEncodeGisRnaPetGm12878NucleusPapAlnRep1.bam.bai /gbdb/hg19/bbi/wgEncodeGisRnaPetGm12878NucleusPapMinusRawSigRep1.bigWig /gbdb/hg19/bbi/wgEncodeGisRnaPetGm12878NucleusPapPlusRawSigRep1.bigWig /gbdb/hg19/bbi/wgEncodeGisRnaPetH1hescCellPapAlnRep1.bam /gbdb/hg19/bbi/wgEncodeGisRnaPetH1hescCellPapAlnRep1.bam.bai /gbdb/hg19/bbi/wgEncodeGisRnaPetH1hescCellPapMinusRawRep1.bigWig /gbdb/hg19/bbi/wgEncodeGisRnaPetH1hescCellPapPlusRawRep1.bigWig /gbdb/hg19/bbi/wgEncodeGisRnaPetHelas3CellPapAlnRep1.bam /gbdb/hg19/bbi/wgEncodeGisRnaPetHelas3CellPapAlnRep1.bam.bai /gbdb/hg19/bbi/wgEncodeGisRnaPetHelas3CellPapAlnRep2.bam /gbdb/hg19/bbi/wgEncodeGisRnaPetHelas3CellPapAlnRep2.bam.bai /gbdb/hg19/bbi/wgEncodeGisRnaPetHelas3CellPapMinusRawRep1.bigWig /gbdb/hg19/bbi/wgEncodeGisRnaPetHelas3CellPapMinusRawRep2.bigWig /gbdb/hg19/bbi/wgEncodeGisRnaPetHelas3CellPapPlusRawRep1.bigWig /gbdb/hg19/bbi/wgEncodeGisRnaPetHelas3CellPapPlusRawRep2.bigWig /gbdb/hg19/bbi/wgEncodeGisRnaPetHelas3CytosolPapAlnRep1.bam /gbdb/hg19/bbi/wgEncodeGisRnaPetHelas3CytosolPapAlnRep1.bam.bai /gbdb/hg19/bbi/wgEncodeGisRnaPetHelas3CytosolPapMinusRawRep1.bigWig /gbdb/hg19/bbi/wgEncodeGisRnaPetHelas3CytosolPapPlusRawRep1.bigWig /gbdb/hg19/bbi/wgEncodeGisRnaPetHelas3NucleusPapAlnRep1.bam /gbdb/hg19/bbi/wgEncodeGisRnaPetHelas3NucleusPapAlnRep1.bam.bai /gbdb/hg19/bbi/wgEncodeGisRnaPetHelas3NucleusPapMinusRawRep1.bigWig /gbdb/hg19/bbi/wgEncodeGisRnaPetHelas3NucleusPapPlusRawRep1.bigWig /gbdb/hg19/bbi/wgEncodeGisRnaPetHepg2CytosolPapAlnRep1.bam /gbdb/hg19/bbi/wgEncodeGisRnaPetHepg2CytosolPapAlnRep1.bam.bai /gbdb/hg19/bbi/wgEncodeGisRnaPetHepg2CytosolPapMinusRawSigRep1.bigWig /gbdb/hg19/bbi/wgEncodeGisRnaPetHepg2CytosolPapPlusRawSigRep1.bigWig /gbdb/hg19/bbi/wgEncodeGisRnaPetHepg2NucleusPapAlnRep1.bam /gbdb/hg19/bbi/wgEncodeGisRnaPetHepg2NucleusPapAlnRep1.bam.bai /gbdb/hg19/bbi/wgEncodeGisRnaPetHepg2NucleusPapMinusRawSigRep1.bigWig /gbdb/hg19/bbi/wgEncodeGisRnaPetHepg2NucleusPapPlusRawSigRep1.bigWig /gbdb/hg19/bbi/wgEncodeGisRnaPetHuvecCytosolPapAlnRep1.bam /gbdb/hg19/bbi/wgEncodeGisRnaPetHuvecCytosolPapAlnRep1.bam.bai /gbdb/hg19/bbi/wgEncodeGisRnaPetHuvecCytosolPapMinusRawRep1.bigWig /gbdb/hg19/bbi/wgEncodeGisRnaPetHuvecCytosolPapPlusRawRep1.bigWig /gbdb/hg19/bbi/wgEncodeGisRnaPetHuvecNucleusPapAlnRep1.bam /gbdb/hg19/bbi/wgEncodeGisRnaPetHuvecNucleusPapAlnRep1.bam.bai /gbdb/hg19/bbi/wgEncodeGisRnaPetHuvecNucleusPapMinusRawRep1.bigWig /gbdb/hg19/bbi/wgEncodeGisRnaPetHuvecNucleusPapPlusRawRep1.bigWig /gbdb/hg19/bbi/wgEncodeGisRnaPetK562ChromatinTotalAlnRep1.bam /gbdb/hg19/bbi/wgEncodeGisRnaPetK562ChromatinTotalAlnRep1.bam.bai /gbdb/hg19/bbi/wgEncodeGisRnaPetK562ChromatinTotalMinusRawSigRep1.bigWig /gbdb/hg19/bbi/wgEncodeGisRnaPetK562ChromatinTotalPlusRawSigRep1.bigWig /gbdb/hg19/bbi/wgEncodeGisRnaPetK562CytosolPapAlnRep1.bam /gbdb/hg19/bbi/wgEncodeGisRnaPetK562CytosolPapAlnRep1.bam.bai /gbdb/hg19/bbi/wgEncodeGisRnaPetK562CytosolPapMinusRawRep1.bigWig /gbdb/hg19/bbi/wgEncodeGisRnaPetK562CytosolPapPlusRawRep1.bigWig /gbdb/hg19/bbi/wgEncodeGisRnaPetK562NucleolusTotalAlnRep1.bam /gbdb/hg19/bbi/wgEncodeGisRnaPetK562NucleolusTotalAlnRep1.bam.bai /gbdb/hg19/bbi/wgEncodeGisRnaPetK562NucleolusTotalMinusRawSigRep1.bigWig /gbdb/hg19/bbi/wgEncodeGisRnaPetK562NucleolusTotalPlusRawSigRep1.bigWig /gbdb/hg19/bbi/wgEncodeGisRnaPetK562NucleoplasmTotalAlnRep1.bam /gbdb/hg19/bbi/wgEncodeGisRnaPetK562NucleoplasmTotalAlnRep1.bam.bai /gbdb/hg19/bbi/wgEncodeGisRnaPetK562NucleoplasmTotalMinusRawSigRep1.bigWig /gbdb/hg19/bbi/wgEncodeGisRnaPetK562NucleoplasmTotalPlusRawSigRep1.bigWig /gbdb/hg19/bbi/wgEncodeGisRnaPetK562NucleusPapAlnRep1.bam /gbdb/hg19/bbi/wgEncodeGisRnaPetK562NucleusPapAlnRep1.bam.bai /gbdb/hg19/bbi/wgEncodeGisRnaPetK562NucleusPapMinusRawSigRep1.bigWig /gbdb/hg19/bbi/wgEncodeGisRnaPetK562NucleusPapPlusRawSigRep1.bigWig /gbdb/hg19/bbi/wgEncodeGisRnaPetK562PolysomePapAlnRep1.bam /gbdb/hg19/bbi/wgEncodeGisRnaPetK562PolysomePapAlnRep1.bam.bai /gbdb/hg19/bbi/wgEncodeGisRnaPetK562PolysomePapMinusRawSigRep1.bigWig /gbdb/hg19/bbi/wgEncodeGisRnaPetK562PolysomePapPlusRawSigRep1.bigWig /gbdb/hg19/bbi/wgEncodeGisRnaPetNhekCytosolPapAlnRep1.bam /gbdb/hg19/bbi/wgEncodeGisRnaPetNhekCytosolPapAlnRep1.bam.bai /gbdb/hg19/bbi/wgEncodeGisRnaPetNhekCytosolPapMinusRawRep1.bigWig /gbdb/hg19/bbi/wgEncodeGisRnaPetNhekCytosolPapPlusRawRep1.bigWig /gbdb/hg19/bbi/wgEncodeGisRnaPetNhekNucleusPapAlnRep1.bam /gbdb/hg19/bbi/wgEncodeGisRnaPetNhekNucleusPapAlnRep1.bam.bai /gbdb/hg19/bbi/wgEncodeGisRnaPetNhekNucleusPapMinusRawRep1.bigWig /gbdb/hg19/bbi/wgEncodeGisRnaPetNhekNucleusPapPlusRawRep1.bigWig /gbdb/hg19/bbi/wgEncodeGisRnaPetProstateCellPapAlnRep1.bam /gbdb/hg19/bbi/wgEncodeGisRnaPetProstateCellPapAlnRep1.bam.bai /gbdb/hg19/bbi/wgEncodeGisRnaPetProstateCellPapMinusRawSigRep1.bigWig /gbdb/hg19/bbi/wgEncodeGisRnaPetProstateCellPapPlusRawSigRep1.bigWig D) Additional items: current location on alpha: /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/ should be placed on the RR in (overwritting any existing copy): /usr/local/apache/htdocs/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/ /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/README.txt /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/md5sum.txt /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeGisRnaPet/release1/files.txt