#!/bin/sh -ex
# make a mini genbank and refseq download for development, run from 
# a processed root directory
OUTDIR=../genbank.fake
RELVER=132.0

echo this do not currently work
exit 1

NUM_GB_MRNAS=250
NUM_GB_ESTS=250
NUM_RS_MRNAS=200
VERB=''
VERB='-verbose=1'
#VERB='-verbose=2'

# Ensure this dir and bin directory are in the path
dir=`dirname $0`
PATH="$dir:$dir/../bin:$dir/../bin/${MACHTYPE}:${PATH}"

DATABASE=hgSomething  # value doesn't matter, just need with organism
ORGANISM='Homo sapiens'

gbGetTestSubset $VERB -numMrnas=$NUM_GB_MRNAS -numEsts=$NUM_GB_ESTS \
    genbank.$RELVER $DATABASE "$ORGANISM" $OUTDIR

gbGetTestSubset $VERB -numMrnas=$NUM_RS_MRNAS -numEsts=0 refseq.$RELVER \
    $DATABASE "$ORGANISM" $OUTDIR