This track displays translated alignments of 728 million bases of Tetraodon whole genome shotgun reads vs. the $organism genome. Areas highlighted by this track are quite likely to be coding regions.
The alignments were made with blat in translated protein mode requiring two nearby 4-mer matches to trigger a detailed alignment. The human genome was masked with RepeatMasker and Tandem Repeat Finder before running blat.
Many thanks to Genoscope for providing the Tetraodon sequence.
Kent, W.J. BLAT - the BLAST-like alignment tool. Genome Res. 12(4), 656-664 (2002).