Photo courtesy of David Haring, Duke University Primate Center
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Otolemur garnetti Photo courtesy of David Haring, Duke University Primate Center |
This is the first release (Dec 2006) of the low-coverage 1.5X assembly of the bushbaby Otolemur garnetti. The genome sequencing and assembly is provided by the Broad Institute. The N50 size is the length such that 50% of the assembled genome lies in blocks of the N50 size or longer. The N50 length for supercontigs is 101.35 kb and is 3.13 kb for contigs. The total number of bases in supercontigs is 3.39 Gb and in contigs is 1.97 Gb.
A genome position can be specified by the accession number of a sequenced genomic region, an mRNA or EST, a chromosomal coordinate range, or keywords from the GenBank description of an mRNA. The following list shows examples of valid position queries for the Bushbaby genome. See the User's Guide for more information.
| Request: | Genome Browser Response: | |
|---|---|---|
| chrZ | Displays all of chromosome Z | |
| chr3:1-1000000 | Displays first million bases of chr 3 | |
| chr3:1000000+2000 | Displays a region of chr 3 that spans 2000 bases, starting with position 1000000 | |
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| BX950328 | Displays region of mRNA with GenBank accession number BX950328 | |
| BU335953 | Displays region of EST with GenBank accession BU335953 on chr Z | |
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| pseudogene mRNA | Lists transcribed pseudogenes, but not cDNAs | |
| homeobox caudal | Lists mRNAs for caudal homeobox genes | |
| zinc finger | Lists many zinc finger mRNAs | |
| kruppel zinc finger | Lists only kruppel-like zinc fingers | |
| zhang | Lists mRNAs deposited by scientist named Zhang | |
| Taguchi,T. | Lists mRNAs deposited by co-author T. Taguchi | |
| Use this last format for author queries. Although GenBank requires the search format Taguchi T, internally it uses the format Taguchi,T.. | ||
The genome has been sequenced to 1.5X coverage.
Bulk downloads of the sequence and annotation data are available via the Genome Browser FTP server or the Downloads page. *** Developer -- remove this if no conditions for use: These data have specific conditions for use. The Bushbaby browser annotation tracks were generated by UCSC and collaborators worldwide. See the Credits page for a detailed list of the organizations and individuals who contributed to the success of this release.