Description
The data are shown in a tabular format in which each column of
colored boxes represents the variation in genomic DNA levels from a
normal cell line for a
given clone across all of the NCI60 cell lines, and each row
represents the measured genomic DNA levels for clones in a single
sample. The variation in genomic DNA levels for each clone is
represented by a color scale, in which green indicates an increase in
genomic DNA levels, and red indicates a decrease in genomic DNA
levels, relative to the reference sample. The saturation of the color
corresponds to the magnitude of transcript variation. A black color
indicates an undetectable change in genomic DNA, while a gray box
indicates missing data.
Display Options
This track has options to customize tissue types presented and
the color of the display.
Cell Line: This option is only valid when the track is
displayed in full. It determines how the experiments are displayed. The
options are:
- Tissue Averages: Displays the average of the log ratio scores of all cell lines
from the different tissue types.
- All Cell Lines: Displays the log ratio score for all cell line experiments.
- Specific Tissues: Displays the log ratio score for all cell lines belonging
to a given tissue type.
Color Scheme:
Data are presented using two color false display. By default
the colors of green -> positive log ratio, red -> negative log ratio are
used.
However, blue can be substituted for green for those who are color blind.
Details Page
On the details page the probes presented
correspond to those contained in window range seen on the Genome
Browser, the exon probe and experiment selected are highlighted in
blue.