This track shows the human/$organism chains for syntenic regions of the human assembly (July 2003 - hg16) and $organism assembly.
The human/$organism alignment net track (netHg16) was processed with netFilter -syn to produce this set of syntenic alignments.
The chainNet, netSyntenic, netFilter and netClass programs were developed at the University of California at Santa Cruz by Jim Kent. For more information, see Schwartz, S., Kent, W.J., Smit, A., Zhang, Z., Baertsch, R., Hardison, R., Haussler, D., and Miller, W. Human-Mouse Alignments with BLASTZ. Genome Res. 13(1), 103-7 (2003).