Description

This track shows alignments of $organism UniGene sequences to the $organism genome.

Methods

The alignments were done with blat, with a minimum sequence identity of 95%. The alignments were filtered to keep only those with at least 20% coverage, at least 96.5% alignment ratio, and scores within 0.2% of best-in-genome. The $organism genome was masked with RepeatMasker and Tandem Repeats Finder before running blat.