Overview

This super-track combines related tracks of genome-wide Transcriptome Phase 3 data generated by Affymetrix. There are four member tracks:

• Affymetrix Transcriptome Phase 3 Long RNA Fragments - the transcribed fragments (transfrags) representing long RNAs.
• Affymetrix Transcriptome Phase 3 Long RNA Signal - the signal level estimated for each mapped probe position after hybridization with long RNA samples.
• Affymetrix Transcriptome Phase 3 Short RNA Fragments - the transcribed fragments (transfrags) representing short RNAs.
• Affymetrix Transcriptome Phase 3 Short RNA Signal - the signal level estimated for each mapped probe position after hybridization with short RNA samples.

Credits

Data generation and analysis were performed by the transcriptome group at Affymetrix with assistance from colleagues at the University of Leipzig, Fraunhofer Institute, and University of Vienna: P. Kapranov, J. Cheng, S. Dike, D.A. Nix, R. Duttagupta, A.T. Willingham, P.F. Stadler, J. Hertel, J. Hackermüller, I.L. Hofacker, I. Bell, E. Cheung, J. Drenkow, E. Dumais, S. Patel, G. Helt, M. Ganesh, S. Ghosh, A. Piccolboni, V. Sementchenko, H. Tammana, T.R. Gingeras.

Questions or comments about this annotation? Email genome@soe.ucsc.edu.

References

Kapranov P, Cheng J, Dike S, Nix DA, Duttagupta R, Willingham AT, Stadler PF, Hertel J, Hackermüller J, Hofacker IL, et al. RNA maps reveal new RNA classes and a possible function for pervasive transcription. Science. 2007 Jun 8;316(5830):1484-8.