This track displays blastz alignments of the Feb. 2003 mouse draft assembly to the human genome.
A C G T A 91 -114 -31 -123 C -114 100 -125 -31 G -31 -125 100 -114 T -123 -31 -114 91 O = 400, E = 30, K = 3000, L = 3000, M = 50
Blastz uses 12 of 19 seeds and this matrix: A second pass is done at reduced stringency (7mer seeds and MSP threshold of K=2200) to attempt to fill in gaps of up to about 10K bp. Lineage specific repeats are abridged during this alignment.
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The alignments are contributed by Scott Schwartz from the Penn State Bioinformatics Group. Mouse sequence data are provided by the Mouse Genome Sequencing Consortium.