This region was detected as a putative genomic duplication within the golden path. Orange, yellow, dark-light gray represent similarities of >99\%, 99-98\% and 98-90% respectively. Duplications greater than 98% similarity that lack sufficient SDD evidence (likely missed overlaps) are shown as red. Cut off values were at least 1 kb of total sequence aligned (containing at least 500 bp non-RepeatMasked sequence) and at least 90% sequence identity.