Description

These tracks were produced as part of the ENCODE Transcriptome Project. They compare RNA levels in different sub-cellular localizations and cell lines, as measured by a diverse set of technologies. 

Display Conventions

These tracks are multi-view composite tracks that contains multiple data types (views). For each view, there are multiple subtracks that display individually on the browser.  Each view within each track has separate display controls, as described here.  Each view represents RNA abundance within the indicated subcellular compartments.  Specific aspects of the views vary by track.

Credits

These data were generated and analyzed as part of the ENCODE project, a genome-wide consortium project with the aim of cataloging all functional elements in the human genome.  This effort includes collecting a variety of data over a specific set of cell types.  Consequently, data related to these tracks be available under ENCODE tracks.   

References

Holt CE, Bullock SL. Subcellular mRNA localization in animal cells and why it matters.  Science. 2009 Nov 27;326(5957):1212-6.

Jansen RP. mRNA localization: message on the move. Nat Rev Mol Cell Biol. 2001 Apr;2(4):247-56.

Data Release Policy

Data users may freely use ENCODE data, but may not, without prior consent, submit publications that use an unpublished ENCODE dataset until nine months following the release of the dataset. This date is listed in the Restricted Until column on the track configuration page and the download page. The full data release policy for ENCODE is available here.