Description

There are 154,810 gaps of size 100 bases or more for a total of 98,876,036 bases. The largest gap is 3,000 bases. See also: WUSTL Callithrix jacchus assembly details.

Gaps are represented as black boxes in this track. If the relative order and orientation of the contigs on either side of the gap is known, it is a bridged gap and a white line is drawn through the black box representing the gap.

All gaps in this assembly are bridged fragment gaps:

• Fragment - gaps between the Whole Genome Shotgun contigs of a supercontig. (In this context, a contig is a set of overlapping sequence reads. A supercontig is a set of contigs ordered and oriented during the Whole Genome Shotgun process using paired-end reads.) These are represented by varying numbers of Ns in the assembly. Fragment gap sizes are usually taken from read pair data.