(Photo courtesy of The Jackson Laboratory)
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Mus musculus (Photo courtesy of The Jackson Laboratory) |
The Dec. 2011 Mus musculus assembly (Genome Reference Consortium Mouse Build 38 (GCA_000001635.2)) was produced by the Mouse Genome Reference Consortium. For more information about this assembly, see GRCm38 in the NCBI Assembly database.
A genome position can be specified by the accession number of a sequenced genomic region, an mRNA or EST, a chromosomal coordinate range, or keywords from the GenBank description of an mRNA. The following list shows examples of valid position queries for the Mouse genome. See the User's Guide for more information.
| Request: |
Genome Browser Response: |
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| chr16 | Displays all of chromosome 16 | |
| chr16:1-5000000 | Displays first 5 million bases of chr 16 | |
| chr16:1000000+2000 | Displays a region of chr 16 that spans 2000 bases, starting with position 1000000 | |
| GL456161.2 | Displays region of contig GL456161.2 | |
| BC012683 | Displays alignment location of mRNA with GenBank accession BC012683 | |
| AW045217 | Displays alignment location of EST with GenBank accession AW045217 | |
| Ncam2 | Displays region of genome with official MGI mouse genetic nomenclature Ncam2 | |
| pseudogene mRNA | Lists transcribed pseudogenes but not cDNAs | |
| zinc finger | Lists many zinc finger mRNAs | |
| kruppel zinc finger | Lists only kruppel-like zinc fingers | |
| huntington | Lists candidate genes associated with Huntington's disease | |
| Smith,D. | Lists mRNAs deposited by co-author D. Smith | |
| Use this last format for author queries. Although GenBank requires the search format Smith D, internally it uses the format Smith,D.. | ||
Genome Reference Consortium GRCm38, which includes approximately 2.6 Gb of sequence, is considered to be "essentially complete". The assembly includes chromosomes 1-19, X, Y, M (mitochondrial DNA) and chr*_random (unlocalized) and chrUn_* (unplaced clone contigs). For information about the process used to assemble this version, see the GRC website. Note that the UCSC mm10 database contains only the reference strain C57BL/6J.
Bulk downloads of the sequence and annotation data are available via the Genome Browser FTP server or the Downloads page. The Mouse browser annotation tracks were generated by UCSC and collaborators worldwide. See the Credits page for a detailed list of the organizations and individuals who contributed to the success of this release.