This track displays alignments of the Dec. 2001 human genome vs. the mouse genome.
The alignments were done with blat in translated protein mode using the parameters -q=dnax -t=dnax. The default settings were used otherwise. Both genomes were masked with RepeatMasker and Tandem Repeat Finder before running blat. Places where more than 250 alignments occurred over the same place were filtered out. Beware of alignments of greater than 97% identity: these may reflect mouse contamination in the human genome or human contamination in the mouse genome.
This track is produced at UCSC. Mouse sequence data are provided by the Mouse Genome Sequencing Consortium.