Sus scrofa Photo courtesy of Keith Weller, (USDA image gallery)

The Apr. 2009 Sus scrofa draft assembly (SGSC Sscrofa9 (NCBI project 10718, CM000812)) was produced by the Swine Genome Sequencing Consortium

Sample position queries

A genome position can be specified by the accession number of a sequenced genomic region, an mRNA or EST, a chromosomal coordinate range, or keywords from the GenBank description of an mRNA. The following list shows examples of valid position queries for the Pig genome. See the User's Guide for more information.

Request:		Genome Browser Response:
chrZ		Displays all of chromosome Z
chr3:1-1000000		Displays first million bases of chr 3
chr3:1000000+2000		Displays a region of chr 3 that spans 2000 bases, starting with position 1000000
BX950328		Displays region of mRNA with GenBank accession number BX950328
BU335953		Displays region of EST with GenBank accession BU335953 on chr Z
pseudogene mRNA		Lists transcribed pseudogenes, but not cDNAs
homeobox caudal		Lists mRNAs for caudal homeobox genes
zinc finger		Lists many zinc finger mRNAs
kruppel zinc finger		Lists only kruppel-like zinc fingers
zhang		Lists mRNAs deposited by scientist named Zhang
Taguchi,T.		Lists mRNAs deposited by co-author T. Taguchi
Use this last format for author queries. Although GenBank requires the search format Taguchi T, internally it uses the format Taguchi,T..

Assembly details

The genome has been sequenced to 4X coverage. See also: Sscrofa9 README assembly information.

Bulk downloads of the sequence and annotation data are available via the Genome Browser FTP server or the Downloads page. *** Developer -- remove this if no conditions for use: These data have specific conditions for use. The Pig browser annotation tracks were generated by UCSC and collaborators worldwide. See the Credits page for a detailed list of the organizations and individuals who contributed to the success of this release.