Description

This track depicts gaps in the assembly (Mar. 2012, RGSC Rnor_5.0 (GCA_000001895.3)) of the $organism genome.

Gaps are represented as black boxes in this track. If the relative order and orientation of the contigs on either side of the gap are known, it is a bridged gap and a white line is drawn through the black box representing the gap.

This assembly contains the following principal types of gaps:

• Contig - Gaps between the scaffolds of a draft clone. (In this context, a contig is a set of overlapping sequence reads.)
• Scaffold - Gaps between scaffolds in an assembled chromosome.
• Other - Sequences of gaps not marked in the assembly AGP files.