The Sep. 2008 Meloidogyne hapla draft assembly was produced by The Center for the Biology of Nematode Parasitism, N.C. State, sequencing center.
A genome position can be specified by the accession number of a sequenced genomic region, an mRNA or EST, a chromosomal coordinate range, or keywords from the GenBank description of an mRNA. The following list shows examples of valid position queries for the M. hapla genome. See the User's Guide for more information.
| Request: | Genome Browser Response: | |
|---|---|---|
| MhA1_Contig127:1-100,000 | Displays first hundred thousand bases of contig MhA1_Contig127 | |
| MhA1_Contig127:100,000+2,000 | Displays a region of contig MhA1_Contig127 that spans 2000 bases, starting with position 100,000 | |
| | ||
| AF117339 | Displays region of mRNA with GenBank accession number AF117339 | |
| BM883020 | Displays region of EST with GenBank accession BM883020 | |
| | ||
| pseudogene | Lists transcribed pseudogenes | |
| homeobox caudal | Lists mRNAs for caudal homeobox genes | |
| zinc finger | Lists many zinc finger mRNAs | |
| kruppel zinc finger | Lists only kruppel-like zinc fingers | |
| zahler | Lists mRNAs deposited by scientist named zahler | |
| Taguchi,T. | Lists mRNAs deposited by co-author T. Taguchi | |
| Use this last format for author queries. Although GenBank requires the search format Taguchi T, internally it uses the format Taguchi,T.. | ||
See also, ABLG01 WGS information.
This draft assembly is composed of 3,452 contigs for a total size of 53,017,507 nucleotides. The largest contig, MhA1_Contig88, is 360,446 nucleotides. One half of the sequence, 26,508,753 bases, is contained in 372 contigs, all of at least 37,608 bases (N50). There are no gaps in these contigs.
The included mitochondrial sequence is from the genbank accession NC_010383.2.
Bulk downloads of the sequence and annotation data are available via the Genome Browser FTP server or the Downloads page. The Meloidogyne hapla browser annotation tracks were generated by UCSC and collaborators worldwide. See the Credits page for a detailed list of the organizations and individuals who contributed to the success of this release.