Description

This track shows the location of both the consensus sequences and target sequences used for the selection of probes on the Affymetrix Zebrafish genome chip.

Display Conventions and Configuration

This track follows the display conventions for composite tracks. To display only selected subtracks, uncheck the boxes next to the tracks you wish to hide.

Methods

Consensus and target sequences were downloaded from the Affymetrix Product Support web page. The sequences were mapped to the genome with blat followed by pslCDnaFilter using the following parameters:
-localNearBest=0.005, -minQSize=20, -minNonRepSize=16, -ignoreNs, -bestOverlap, -minId=0.95 and -minCover=0.15

Credits

Thanks to Affymetrix for the data underlying this track.