This track shows alignments of $organism mRNAs from the Zebrafish Gene Collection (ZGC) having full-length open reading frames (ORFs) to the genome. This is a subproject of the Mammalian Gene Collection (MGC) project.
The track follows the display conventions for gene prediction tracks.
An optional codon coloring feature is available for quick validation and comparison of gene predictions. To display codon colors, select the genomic codons option from the Color track by codons pull-down menu. Click here for more information about this feature.
GenBank $organism ZGC mRNAs identified as having full-length ORFs were aligned against the genome using blat. When a single mRNA aligned in multiple places, the alignment having the highest base identity was found. Only alignments having a base identity level within 1% of the best and at least 95% base identity with the genomic sequence were kept.
The $organism ZGC full-length mRNA track was produced at UCSC from mRNA sequence data submitted to GenBank by the Zebrafish Gene Collection project.
Mammalian Gene Collection project references.
Kent, W.J. BLAT - the BLAST-like alignment tool. Genome Res. 12(4), 656-664 (2002).