include ../../inc/common.mk

L += -lm $(MYSQLLIBS)
MYLIBDIR = ../../lib/$(MACHTYPE)
MYLIBS =  $(MYLIBDIR)/jkhgap.a $(MYLIBDIR)/jkweb.a $(L)

O = findStanAlignments  stanToBedAndExpRecs

%: %.c 
	${CC} ${COPT} ${CFLAGS}  -Wimplicit  -I../inc -I../../inc  -o ${DESTDIR}${BINDIR}/$@ $(addsuffix .c,$@) $(MYLIBS) ${L}
	${STRIP} ${DESTDIR}${BINDIR}/$@

all: $(O)

#$(O): %: %.c ../lib/$(ARCHTYPE)/libsugnet.a 
#	${CC} ${COPT} ${CFLAGS} -Wimplicit  -I../inc -I$(KENT_DIR)/inc -I$(KENT_DIR)/hg/inc -o $@ $(addsuffix .c,$@)  $(SUGNET_LIBS) $(KENT_LIBS)

clean::
	rm -fr ${O} ${ARCHTYPE}