hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /san/sanvol1/pfam/Pfam_fs
Sequence file:            ../splitProt/00011.fa
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Query sequence: uc001aeg.1
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RMMBL    RNA-metabolising metallo-beta-lactamase         64.1    7.5e-19   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RMMBL      1/1     252   294 ..     1    45 []    64.1  7.5e-19

Alignments of top-scoring domains:
RMMBL: domain 1 of 1, from 252 to 294: score 64.1, E = 7.5e-19
                   *->evipvrarVetidgfSGHADqreLlefikllpkPkkvilVHGEpr<-
                      +v++v+++Ve++ +fS+HAD++++++++ +   P+ v+lVHGE++  
  uc001aeg.1   252    QVLEVKMQVEYM-SFSAHADAKGIMQLVGQA-EPESVLLVHGEAK   294  

                   *
                    
  uc001aeg.1     -   -    

//

Query sequence: uc001aeh.1
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
RMMBL       RNA-metabolising metallo-beta-lactamase      64.1    7.5e-19   1
Lactamase_B Metallo-beta-lactamase superfamily           13.3     0.0015   2

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
Lactamase_B   1/2      16    51 ..     1    37 [.    10.6   0.0089
Lactamase_B   2/2      53   106 ..    80   121 ..     2.6      2.1
RMMBL         1/1     275   317 ..     1    45 []    64.1  7.5e-19

Alignments of top-scoring domains:
Lactamase_B: domain 1 of 2, from 16 to 51: score 10.6, E = 0.0089
                   *->gvnsyLveggggavLiDtGlg.daallllgldpkdida<-*
                      g++++Lv   g++v+ D+G++ ++++    +d ++i+a   
  uc001aeh.1    16    GRSCILVSIAGKNVMLDCGMHmGFNDD--VDDELEIKA    51   

Lactamase_B: domain 2 of 2, from 53 to 106: score 2.6, E = 2.1
                   *->thhpghgpghvvvylp.gkvlftGDllfs.gcgr.dl.........l
                      ++++  g+  + + +++++v++tGD   ++++ ++ +  ++ +++ l
  uc001aeh.1    53    YAGHVLGAAMFQIKVGsESVVYTGDYNMTpDRHLgAAwidkcrpnlL 99   

                   iaestys<-*
                   i esty+   
  uc001aeh.1   100 ITESTYA    106  

RMMBL: domain 1 of 1, from 275 to 317: score 64.1, E = 7.5e-19
                   *->evipvrarVetidgfSGHADqreLlefikllpkPkkvilVHGEpr<-
                      +v++v+++Ve++ +fS+HAD++++++++ +   P+ v+lVHGE++  
  uc001aeh.1   275    QVLEVKMQVEYM-SFSAHADAKGIMQLVGQA-EPESVLLVHGEAK   317  

                   *
                    
  uc001aeh.1     -   -    

//

Query sequence: uc001aei.1
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RMMBL    RNA-metabolising metallo-beta-lactamase         64.1    7.5e-19   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RMMBL      1/1     278   320 ..     1    45 []    64.1  7.5e-19

Alignments of top-scoring domains:
RMMBL: domain 1 of 1, from 278 to 320: score 64.1, E = 7.5e-19
                   *->evipvrarVetidgfSGHADqreLlefikllpkPkkvilVHGEpr<-
                      +v++v+++Ve++ +fS+HAD++++++++ +   P+ v+lVHGE++  
  uc001aei.1   278    QVLEVKMQVEYM-SFSAHADAKGIMQLVGQA-EPESVLLVHGEAK   320  

                   *
                    
  uc001aei.1     -   -    

//

Query sequence: uc001aej.1
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RMMBL    RNA-metabolising metallo-beta-lactamase         64.1    7.5e-19   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RMMBL      1/1     203   245 ..     1    45 []    64.1  7.5e-19

Alignments of top-scoring domains:
RMMBL: domain 1 of 1, from 203 to 245: score 64.1, E = 7.5e-19
                   *->evipvrarVetidgfSGHADqreLlefikllpkPkkvilVHGEpr<-
                      +v++v+++Ve++ +fS+HAD++++++++ +   P+ v+lVHGE++  
  uc001aej.1   203    QVLEVKMQVEYM-SFSAHADAKGIMQLVGQA-EPESVLLVHGEAK   245  

                   *
                    
  uc001aej.1     -   -    

//

Query sequence: uc001aek.1
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RMMBL    RNA-metabolising metallo-beta-lactamase         64.1    7.5e-19   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RMMBL      1/1     118   160 ..     1    45 []    64.1  7.5e-19

Alignments of top-scoring domains:
RMMBL: domain 1 of 1, from 118 to 160: score 64.1, E = 7.5e-19
                   *->evipvrarVetidgfSGHADqreLlefikllpkPkkvilVHGEpr<-
                      +v++v+++Ve++ +fS+HAD++++++++ +   P+ v+lVHGE++  
  uc001aek.1   118    QVLEVKMQVEYM-SFSAHADAKGIMQLVGQA-EPESVLLVHGEAK   160  

                   *
                    
  uc001aek.1     -   -    

//

Query sequence: uc001ael.1
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
	[no hits above thresholds]

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
	[no hits above thresholds]

Alignments of top-scoring domains:
	[no hits above thresholds]
//