# EnsGeneAutomate: mapping Ensembl species/gff file names to UCSC db
#
# DO NOT EDIT the /cluster/bin/scripts copy of this file --
# edit ~/kent/src/hg/utils/automation/EnsGeneAutomate.pm instead.

# $Id: EnsGeneAutomate.pm,v 1.24 2010/05/27 18:26:52 hiram Exp $
package EnsGeneAutomate;

use warnings;
use strict;
use Carp;
use vars qw(@ISA @EXPORT_OK);
use Exporter;

@ISA = qw(Exporter);

# This is a listing of the public methods and variables (which should be
# treated as constants) exported by this module:
@EXPORT_OK = (
    # Support for common command line options:
    qw( ensVersionList ensGeneVersioning
      ),
);

#	Location of Ensembl FTP site for the releases
my $ensemblFTP = "ftp://ftp.ensembl.org/pub/";

#	version to date relationship for Ensembl archive reference
my @verToDate;
$verToDate[27] = "dec2004";
$verToDate[32] = "jul2005";
$verToDate[33] = "sep2005";
$verToDate[34] = "oct2005";
$verToDate[35] = "nov2005";
$verToDate[37] = "feb2006";
$verToDate[38] = "apr2006";
$verToDate[39] = "jun2006";
$verToDate[41] = "oct2006";
$verToDate[42] = "dec2006";
# before 43 there are no GTF files
$verToDate[43] = "feb2007";
$verToDate[44] = "apr2007";
$verToDate[45] = "jun2007";
$verToDate[46] = "aug2007";
$verToDate[47] = "oct2007";
$verToDate[48] = "dec2007";
$verToDate[49] = "mar2008";
$verToDate[50] = "jul2008";
$verToDate[51] = "nov2008";
$verToDate[52] = "dec2008";
$verToDate[54] = "may2009";
$verToDate[55] = "jul2009";
$verToDate[56] = "sep2009";
$verToDate[57] = "mar2010";
$verToDate[58] = "may2010";
$verToDate[59] = "aug2010";
$verToDate[60] = "nov2010";
$verToDate[61] = "feb2011";
$verToDate[62] = "apr2011";
$verToDate[63] = "jun2011";
$verToDate[64] = "sep2011";
$verToDate[65] = "dec2011";
$verToDate[67] = "jun2012";
$verToDate[68] = "aug2012";
$verToDate[69] = "oct2012";
$verToDate[70] = "jan2013";

#	older versions for archive purposes, there are different
#	directory structures for these, thus, the full path name
#	to append to the release-NN/ top level directory.
#  Fugu fr1 needs help here since there is no GTF file, fetch it from
#	EnsMart
my %ensGeneGtfFileNames_35 = (
'fr1' => 'fugu_rubripes_35_2g/data/fasta/dna/README',
);
my %ensGeneFtpPeptideFileNames_35 = (
'fr1' => 'fugu_rubripes_35_2g/data/fasta/pep/Fugu_rubripes.FUGU2.nov.pep.fa.gz',
);
my %ensGeneFtpMySqlFileNames_35 = (
'fr1' => 'fugu_rubripes_35_2g/data/mysql/fugu_rubripes_core_35_2g/assembly.txt.table.gz',
);

my %ensGeneGtfFileNames_46 = (
'mm8' => 'mus_musculus_46_36g/data/gtf/Mus_musculus.NCBIM36.46.gtf.gz',
);
my %ensGeneFtpPeptideFileNames_46 = (
'mm8' => 'mus_musculus_46_36g/data/fasta/pep/Mus_musculus.NCBIM36.46.pep.all.fa.gz',
);
my %ensGeneFtpMySqlFileNames_46 = (
'mm8' => 'mus_musculus_46_36g/data/mysql/mus_musculus_core_46_36g',
);

#	This listings are created by going to the FTP site and running
#	an ls on the gtf directory.  Edit that listing into this hash.
# key is UCSC db name, result is FTP file name under the gtf directory
my %ensGeneGtfFileNames_47 = (
'aedAeg0' => 'Aedes_aegypti.AaegL1.47.gtf.gz',
'anoGam2' => 'Anopheles_gambiae.AgamP3.47.gtf.gz',
'bosTau3' => 'Bos_taurus.Btau_3.1.47.gtf.gz',
'ce5' => 'Caenorhabditis_elegans.WS180.47.gtf.gz',
'canFam2' => 'Canis_familiaris.BROADD2.47.gtf.gz',
'cavPor2' => 'Cavia_porcellus.GUINEAPIG.47.gtf.gz',
'ci2' => 'Ciona_intestinalis.JGI2.47.gtf.gz',
'cioSav2' => 'Ciona_savignyi.CSAV2.0.47.gtf.gz',
'danRer5' => 'Danio_rerio.ZFISH7.47.gtf.gz',
'dasNov1' => 'Dasypus_novemcinctus.ARMA.47.gtf.gz',
'dm4' => 'Drosophila_melanogaster.BDGP4.3.47.gtf.gz',
'echTel1' => 'Echinops_telfairi.TENREC.47.gtf.gz',
'eriEur1' => 'Erinaceus_europaeus.HEDGEHOG.47.gtf.gz',
'felCat3' => 'Felis_catus.CAT.47.gtf.gz',
'galGal3' => 'Gallus_gallus.WASHUC2.47.gtf.gz',
'gasAcu1' => 'Gasterosteus_aculeatus.BROADS1.47.gtf.gz',
'hg18' => 'Homo_sapiens.NCBI36.47.gtf.gz',
'loxAfr1' => 'Loxodonta_africana.BROADE1.47.gtf.gz',
'rheMac2' => 'Macaca_mulatta.MMUL_1.47.gtf.gz',
'monDom5' => 'Monodelphis_domestica.BROADO5.47.gtf.gz',
'mm9' => 'Mus_musculus.NCBIM37.47.gtf.gz',
'myoLuc1' => 'Myotis_lucifugus.MICROBAT1.47.gtf.gz',
'ornAna1' => 'Ornithorhynchus_anatinus.OANA5.47.gtf.gz',
'oryCun1' => 'Oryctolagus_cuniculus.RABBIT.47.gtf.gz',
'oryLat1' => 'Oryzias_latipes.MEDAKA1.47.gtf.gz',
'otoGar1' => 'Otolemur_garnettii.BUSHBABY1.47.gtf.gz',
'panTro2' => 'Pan_troglodytes.CHIMP2.1.47.gtf.gz',
'rn4' => 'Rattus_norvegicus.RGSC3.4.47.gtf.gz',
'sacCer1' => 'Saccharomyces_cerevisiae.SGD1.01.47.gtf.gz',
'sorAra0' => 'Sorex_araneus.COMMON_SHREW1.47.gtf.gz',
'speTri0' => 'Spermophilus_tridecemlineatus.SQUIRREL.47.gtf.gz',
'fr2' => 'Takifugu_rubripes.FUGU4.47.gtf.gz',
'tetNig1' => 'Tetraodon_nigroviridis.TETRAODON7.47.gtf.gz',
'tupBel1' => 'Tupaia_belangeri.TREESHREW.47.gtf.gz',
'xenTro2' => 'Xenopus_tropicalis.JGI4.1.47.gtf.gz',
);

my %ensGeneFtpPeptideFileNames_47 = (
'aedAeg0' => 'aedes_aegypti_47_1a/pep/Aedes_aegypti.AaegL1.47.pep.all.fa.gz',
'anoGam2' => 'anopheles_gambiae_47_3i/pep/Anopheles_gambiae.AgamP3.47.pep.all.fa.gz',
'bosTau3' => 'bos_taurus_47_3d/pep/Bos_taurus.Btau_3.1.47.pep.all.fa.gz',
'ce5' => 'caenorhabditis_elegans_47_180/pep/Caenorhabditis_elegans.WS180.47.pep.all.fa.gz',
'canFam2' => 'canis_familiaris_47_2e/pep/Canis_familiaris.BROADD2.47.pep.all.fa.gz',
'cavPor2' => 'cavia_porcellus_47_1b/pep/Cavia_porcellus.GUINEAPIG.47.pep.all.fa.gz',
'ci2' => 'ciona_intestinalis_47_2g/pep/Ciona_intestinalis.JGI2.47.pep.all.fa.gz',
'cioSav2' => 'ciona_savignyi_47_2e/pep/Ciona_savignyi.CSAV2.0.47.pep.all.fa.gz',
'danRer5' => 'danio_rerio_47_7a/pep/Danio_rerio.ZFISH7.47.pep.all.fa.gz',
'dasNov1' => 'dasypus_novemcinctus_47_1d/pep/Dasypus_novemcinctus.ARMA.47.pep.all.fa.gz',
'dm4' => 'drosophila_melanogaster_47_43b/pep/Drosophila_melanogaster.BDGP4.3.47.pep.all.fa.gz',
'echTel1' => 'echinops_telfairi_47_1d/pep/Echinops_telfairi.TENREC.47.pep.all.fa.gz',
'eriEur1' => 'erinaceus_europaeus_47_1b/pep/Erinaceus_europaeus.HEDGEHOG.47.pep.all.fa.gz',
'felCat3' => 'felis_catus_47_1b/pep/Felis_catus.CAT.47.pep.all.fa.gz',
'galGal3' => 'gallus_gallus_47_2e/pep/Gallus_gallus.WASHUC2.47.pep.all.fa.gz',
'gasAcu1' => 'gasterosteus_aculeatus_47_1d/pep/Gasterosteus_aculeatus.BROADS1.47.pep.all.fa.gz',
'hg18' => 'homo_sapiens_47_36i/pep/Homo_sapiens.NCBI36.47.pep.all.fa.gz',
'loxAfr1' => 'loxodonta_africana_47_1c/pep/Loxodonta_africana.BROADE1.47.pep.all.fa.gz',
'rheMac2' => 'macaca_mulatta_47_10f/pep/Macaca_mulatta.MMUL_1.47.pep.all.fa.gz',
'monDom5' => 'monodelphis_domestica_47_5b/pep/Monodelphis_domestica.BROADO5.47.pep.all.fa.gz',
'mm9' => 'mus_musculus_47_37/pep/Mus_musculus.NCBIM37.47.pep.all.fa.gz',
'myoLuc0' => 'myotis_lucifugus_47_1c/pep/Myotis_lucifugus.MICROBAT1.47.pep.all.fa.gz',
'ornAna1' => 'ornithorhynchus_anatinus_47_1d/pep/Ornithorhynchus_anatinus.OANA5.47.pep.all.fa.gz',
'oryCun1' => 'oryctolagus_cuniculus_47_1d/pep/Oryctolagus_cuniculus.RABBIT.47.pep.all.fa.gz',
'oryLat1' => 'oryzias_latipes_47_1c/pep/Oryzias_latipes.MEDAKA1.47.pep.all.fa.gz',
'otoGar1' => 'otolemur_garnettii_47_1a/pep/Otolemur_garnettii.BUSHBABY1.47.pep.all.fa',
'panTro2' => 'pan_troglodytes_47_21f/pep/Pan_troglodytes.CHIMP2.1.47.pep.all.fa.gz ',
'rn4' => 'rattus_norvegicus_47_34q/pep/Rattus_norvegicus.RGSC3.4.47.pep.all.fa.gz',
'sacCer1' => 'saccharomyces_cerevisiae_47_1g/pep/Saccharomyces_cerevisiae.SGD1.01.47.pep.all.fa.gz',
'sorAra0' => 'sorex_araneus_47_1a/pep/Sorex_araneus.COMMON_SHREW1.47.pep.all.fa.gz',
'speTri0' => 'spermophilus_tridecemlineatus_47_1c/pep/Spermophilus_tridecemlineatus.SQUIRREL.47.pep.all.fa.gz',
'fr2' => 'takifugu_rubripes_47_4g/pep/Takifugu_rubripes.FUGU4.47.pep.all.fa.gz',
'tetNig1' => 'tetraodon_nigroviridis_47_1i/pep/Tetraodon_nigroviridis.TETRAODON7.47.pep.all.fa.gz',
'tupBel1' => 'tupaia_belangeri_47_1b/pep/Tupaia_belangeri.TREESHREW.47.pep.all.fa.gz',
'xenTro2' => 'xenopus_tropicalis_47_41g/pep/Xenopus_tropicalis.JGI4.1.47.pep.all.fa.gz',
);

#	directory name under release-47/mysql/ to find 'seq_region' and
#	'assembly' table copies for GeneScaffold coordinate conversions
my %ensGeneFtpMySqlFileNames_47 = (
'aedAeg0' => 'aedes_aegypti_core_47_1a',
'anoGam2' => 'anopheles_gambiae_core_47_3i',
'bosTau3' => 'bos_taurus_core_47_3d',
'ce5' => 'caenorhabditis_elegans_core_47_180',
'canFam2' => 'canis_familiaris_core_47_2e',
'cavPor2' => 'cavia_porcellus_core_47_1b',
'ci2' => 'ciona_intestinalis_core_47_2g',
'cioSav2' => 'ciona_savignyi_core_47_2e',
'danRer5' => 'danio_rerio_core_47_7a',
'dasNov1' => 'dasypus_novemcinctus_core_47_1d',
'dm4' => 'drosophila_melanogaster_core_47_43b',
'echTel1' => 'echinops_telfairi_core_47_1d',
'eriEur1' => 'erinaceus_europaeus_core_47_1b',
'felCat3' => 'felis_catus_core_47_1b',
'galGal3' => 'gallus_gallus_core_47_2e',
'gasAcu1' => 'gasterosteus_aculeatus_core_47_1d',
'hg18' => 'homo_sapiens_core_47_36i',
'loxAfr1' => 'loxodonta_africana_core_47_1c',
'rheMac2' => 'macaca_mulatta_core_47_10f',
'monDom5' => 'monodelphis_domestica_core_47_5b',
'mm9' => 'mus_musculus_core_47_37',
'myoLuc0' => 'myotis_lucifugus_core_47_1c',
'ornAna1' => 'ornithorhynchus_anatinus_core_47_1d',
'oryCun1' => 'oryctolagus_cuniculus_core_47_1d',
'oryLat1' => 'oryzias_latipes_core_47_1c',
'otoGar1' => 'otolemur_garnettii_core_47_1a',
'panTro2' => 'pan_troglodytes_core_47_21f',
'rn4' => 'rattus_norvegicus_core_47_34q',
'sacCer1' => 'saccharomyces_cerevisiae_core_47_1g',
'sorAra0' => 'sorex_araneus_core_47_1a',
'speTri0' => 'spermophilus_tridecemlineatus_core_47_1c',
'fr2' => 'takifugu_rubripes_core_47_4g',
'tetNig1' => 'tetraodon_nigroviridis_core_47_1i',
'tupBel1' => 'tupaia_belangeri_core_47_1b',
'xenTro2' => 'xenopus_tropicalis_core_47_41g',
);

# key is UCSC db name, result is FTP file name under the gtf directory
my %ensGeneGtfFileNames_48 = (
'aedAeg0' => 'aedes_aegypti/Aedes_aegypti.AaegL1.48.gtf.gz',
'anoGam2' => 'anopheles_gambiae/Anopheles_gambiae.AgamP3.48.gtf.gz',
'bosTau3' => 'bos_taurus/Bos_taurus.Btau_3.1.48.gtf.gz',
'ce5' => 'caenorhabditis_elegans/Caenorhabditis_elegans.WS180.48.gtf.gz',
'canFam2' => 'canis_familiaris/Canis_familiaris.BROADD2.48.gtf.gz',
'cavPor2' => 'cavia_porcellus/Cavia_porcellus.GUINEAPIG.48.gtf.gz',
'ci2' => 'ciona_intestinalis/Ciona_intestinalis.JGI2.48.gtf.gz',
'cioSav2' => 'ciona_savignyi/Ciona_savignyi.CSAV2.0.48.gtf.gz',
'danRer5' => 'danio_rerio/Danio_rerio.ZFISH7.48.gtf.gz',
'dasNov1' => 'dasypus_novemcinctus/Dasypus_novemcinctus.ARMA.48.gtf.gz',
'dm4' => 'drosophila_melanogaster/Drosophila_melanogaster.BDGP4.3.48.gtf.gz',
'echTel1' => 'echinops_telfairi/Echinops_telfairi.TENREC.48.gtf.gz',
'eriEur1' => 'erinaceus_europaeus/Erinaceus_europaeus.HEDGEHOG.48.gtf.gz',
'felCat3' => 'felis_catus/Felis_catus.CAT.48.gtf.gz',
'galGal3' => 'gallus_gallus/Gallus_gallus.WASHUC2.48.gtf.gz',
'gasAcu1' => 'gasterosteus_aculeatus/Gasterosteus_aculeatus.BROADS1.48.gtf.gz',
'hg18' => 'homo_sapiens/Homo_sapiens.NCBI36.48.gtf.gz',
'loxAfr1' => 'loxodonta_africana/Loxodonta_africana.BROADE1.48.gtf.gz',
'rheMac2' => 'macaca_mulatta/Macaca_mulatta.MMUL_1.48.gtf.gz',
'micMur0' => 'microcebus_murinus/Microcebus_murinus.micMur1.48.gtf.gz',
'monDom5' => 'monodelphis_domestica/Monodelphis_domestica.BROADO5.48.gtf.gz',
'mm9' => 'mus_musculus/Mus_musculus.NCBIM37.48.gtf.gz',
'myoLuc0' => 'myotis_lucifugus/Myotis_lucifugus.MICROBAT1.48.gtf.gz',
'ochPri0' => 'ochotona_princeps/Ochotona_princeps.pika.48.gtf.gz',
'ornAna1' => 'ornithorhynchus_anatinus/Ornithorhynchus_anatinus.OANA5.48.gtf.gz',
'oryCun1' => 'oryctolagus_cuniculus/Oryctolagus_cuniculus.RABBIT.48.gtf.gz',
'oryLat1' => 'oryzias_latipes/Oryzias_latipes.MEDAKA1.48.gtf.gz',
'otoGar1' => 'otolemur_garnettii/Otolemur_garnettii.BUSHBABY1.48.gtf.gz',
'panTro2' => 'pan_troglodytes/Pan_troglodytes.CHIMP2.1.48.gtf.gz',
'rn4' => 'rattus_norvegicus/Rattus_norvegicus.RGSC3.4.48.gtf.gz',
'sacCer1' => 'saccharomyces_cerevisiae/Saccharomyces_cerevisiae.SGD1.48.gtf.gz',
'sorAra0' => 'sorex_araneus/Sorex_araneus.COMMON_SHREW1.48.gtf.gz',
'speTri0' => 'spermophilus_tridecemlineatus/Spermophilus_tridecemlineatus.SQUIRREL.48.gtf.gz',
'fr2' => 'takifugu_rubripes/Takifugu_rubripes.FUGU4.48.gtf.gz',
'tetNig1' => 'tetraodon_nigroviridis/Tetraodon_nigroviridis.TETRAODON7.48.gtf.gz',
'tupBel1' => 'tupaia_belangeri/Tupaia_belangeri.TREESHREW.48.gtf.gz',
'xenTro2' => 'xenopus_tropicalis/Xenopus_tropicalis.JGI4.1.48.gtf.gz',
);

# key is UCSC db name, result is FTP file name under the fasta directory
my %ensGeneFtpPeptideFileNames_48 = (
'aedAeg0' => 'aedes_aegypti/pep/Aedes_aegypti.AaegL1.48.pep.all.fa.gz',
'anoGam2' => 'anopheles_gambiae/pep/Anopheles_gambiae.AgamP3.48.pep.all.fa.gz',
'bosTau3' => 'bos_taurus/pep/Bos_taurus.Btau_3.1.48.pep.all.fa.gz',
'ce5' => 'caenorhabditis_elegans/pep/Caenorhabditis_elegans.WS180.48.pep.all.fa.gz',
'canFam2' => 'canis_familiaris/pep/Canis_familiaris.BROADD2.48.pep.all.fa.gz',
'cavPor2' => 'cavia_porcellus/pep/Cavia_porcellus.GUINEAPIG.48.pep.all.fa.gz',
'ci2' => 'ciona_intestinalis/pep/Ciona_intestinalis.JGI2.48.pep.all.fa.gz',
'cioSav2' => 'ciona_savignyi/pep/Ciona_savignyi.CSAV2.0.48.pep.all.fa.gz',
'danRer5' => 'danio_rerio/pep/Danio_rerio.ZFISH7.48.pep.all.fa.gz',
'dasNov1' => 'dasypus_novemcinctus/pep/Dasypus_novemcinctus.ARMA.48.pep.all.fa.gz',
'dm4' => 'drosophila_melanogaster/pep/Drosophila_melanogaster.BDGP4.3.48.pep.all.fa.gz',
'echTel1' => 'echinops_telfairi/pep/Echinops_telfairi.TENREC.48.pep.all.fa.gz',
'eriEur1' => 'erinaceus_europaeus/pep/Erinaceus_europaeus.HEDGEHOG.48.pep.all.fa.gz',
'felCat3' => 'felis_catus/pep/Felis_catus.CAT.48.pep.all.fa.gz',
'galGal3' => 'gallus_gallus/pep/Gallus_gallus.WASHUC2.48.pep.all.fa.gz',
'gasAcu1' => 'gasterosteus_aculeatus/pep/Gasterosteus_aculeatus.BROADS1.48.pep.all.fa.gz',
'hg18' => 'homo_sapiens/pep/Homo_sapiens.NCBI36.48.pep.all.fa.gz',
'loxAfr1' => 'loxodonta_africana/pep/Loxodonta_africana.BROADE1.48.pep.all.fa.gz',
'rheMac2' => 'macaca_mulatta/pep/Macaca_mulatta.MMUL_1.48.pep.all.fa.gz',
'micMur0' => 'microcebus_murinus/pep/Microcebus_murinus.micMur1.48.pep.all.fa.gz',
'monDom5' => 'monodelphis_domestica/pep/Monodelphis_domestica.BROADO5.48.pep.all.fa.gz',
'mm9' => 'mus_musculus/pep/Mus_musculus.NCBIM37.48.pep.all.fa.gz',
'myoLuc0' => 'myotis_lucifugus/pep/Myotis_lucifugus.MICROBAT1.48.pep.all.fa.gz',
'ochPri0' => 'ochotona_princeps/pep/Ochotona_princeps.pika.48.pep.all.fa.gz',
'ornAna1' => 'ornithorhynchus_anatinus/pep/Ornithorhynchus_anatinus.OANA5.48.pep.all.fa.gz',
'oryCun1' => 'oryctolagus_cuniculus/pep/Oryctolagus_cuniculus.RABBIT.48.pep.all.fa.gz',
'oryLat1' => 'oryzias_latipes/pep/Oryzias_latipes.MEDAKA1.48.pep.all.fa.gz',
'otoGar1' => 'otolemur_garnettii/pep/Otolemur_garnettii.BUSHBABY1.48.pep.all.fa.gz',
'panTro2' => 'pan_troglodytes/pep/Pan_troglodytes.CHIMP2.1.48.pep.all.fa.gz',
'rn4' => 'rattus_norvegicus/pep/Rattus_norvegicus.RGSC3.4.48.pep.all.fa.gz',
'sacCer1' => 'saccharomyces_cerevisiae/pep/Saccharomyces_cerevisiae.SGD1.48.pep.all.fa.gz',
'sorAra0' => 'sorex_araneus/pep/Sorex_araneus.COMMON_SHREW1.48.pep.all.fa.gz',
'speTri0' => 'spermophilus_tridecemlineatus/pep/Spermophilus_tridecemlineatus.SQUIRREL.48.pep.all.fa.gz',
'fr2' => 'takifugu_rubripes/pep/Takifugu_rubripes.FUGU4.48.pep.all.fa.gz',
'tetNig1' => 'tetraodon_nigroviridis/pep/Tetraodon_nigroviridis.TETRAODON7.48.pep.all.fa.gz',
'tupBel1' => 'tupaia_belangeri/pep/Tupaia_belangeri.TREESHREW.48.pep.all.fa.gz',
'xenTro2' => 'xenopus_tropicalis/pep/Xenopus_tropicalis.JGI4.1.48.pep.all.fa.gz',
);

#	directory name under release-48/mysql/ to find 'seq_region' and
#	'assembly' table copies for GeneScaffold coordinate conversions
my %ensGeneFtpMySqlFileNames_48 = (
'aedAeg0' => 'aedes_aegypti_core_48_1b',
'anoGam2' => 'anopheles_gambiae_core_48_3j',
'bosTau3' => 'bos_taurus_core_48_3e',
'ce5' => 'caenorhabditis_elegans_core_48_180a',
'canFam2' => 'canis_familiaris_core_48_2f',
'cavPor2' => 'cavia_porcellus_core_48_1c',
'ci2' => 'ciona_intestinalis_core_48_2h',
'cioSav2' => 'ciona_savignyi_core_48_2f',
'danRer5' => 'danio_rerio_core_48_7b',
'dasNov1' => 'dasypus_novemcinctus_core_48_1e',
'dm4' => 'drosophila_melanogaster_core_48_43b',
'echTel1' => 'echinops_telfairi_core_48_1e',
'eriEur1' => 'erinaceus_europaeus_core_48_1c',
'felCat3' => 'felis_catus_core_48_1c',
'galGal3' => 'gallus_gallus_core_48_2f',
'gasAcu1' => 'gasterosteus_aculeatus_core_48_1e',
'hg18' => 'homo_sapiens_core_48_36j',
'loxAfr1' => 'loxodonta_africana_core_48_1d',
'rheMac2' => 'macaca_mulatta_core_48_10g',
'micMur0' => 'microcebus_murinus_core_48_1',
'monDom5' => 'monodelphis_domestica_core_48_5c',
'mm9' => 'mus_musculus_core_48_37a',
'myoLuc0' => 'myotis_lucifugus_core_48_1d',
'ochPri0' => 'ochotona_princeps_core_48_1',
'ornAna1' => 'ornithorhynchus_anatinus_core_48_1e',
'oryCun1' => 'oryctolagus_cuniculus_core_48_1e',
'oryLat1' => 'oryzias_latipes_core_48_1d',
'otoGar1' => 'otolemur_garnettii_core_48_1b',
'panTro2' => 'pan_troglodytes_core_48_21g',
'rn4' => 'rattus_norvegicus_core_48_34r',
'sacCer1' => 'saccharomyces_cerevisiae_core_48_1h',
'sorAra0' => 'sorex_araneus_core_48_1b',
'speTri0' => 'spermophilus_tridecemlineatus_core_48_1d',
'fr2' => 'takifugu_rubripes_core_48_4h',
'tetNig1' => 'tetraodon_nigroviridis_core_48_1j',
'tupBel1' => 'tupaia_belangeri_core_48_1c',
'xenTro2' => 'xenopus_tropicalis_core_48_41h',
);

# key is UCSC db name, result is FTP file name under the gtf directory
my %ensGeneGtfFileNames_49 = (
'aedAeg0' => 'aedes_aegypti/Aedes_aegypti.AaegL1.49.gtf.gz',
'anoGam2' => 'anopheles_gambiae/Anopheles_gambiae.AgamP3.49.gtf.gz',
'bosTau3' => 'bos_taurus/Bos_taurus.Btau_3.1.49.gtf.gz',
'ce5' => 'caenorhabditis_elegans/Caenorhabditis_elegans.WS180.49.gtf.gz',
'canFam2' => 'canis_familiaris/Canis_familiaris.BROADD2.49.gtf.gz',
'cavPor2' => 'cavia_porcellus/Cavia_porcellus.GUINEAPIG.49.gtf.gz',
'ci2' => 'ciona_intestinalis/Ciona_intestinalis.JGI2.49.gtf.gz',
'cioSav2' => 'ciona_savignyi/Ciona_savignyi.CSAV2.0.49.gtf.gz',
'danRer5' => 'danio_rerio/Danio_rerio.ZFISH7.49.gtf.gz',
'dasNov1' => 'dasypus_novemcinctus/Dasypus_novemcinctus.ARMA.49.gtf.gz',
'dm5' => 'drosophila_melanogaster/Drosophila_melanogaster.BDGP5.4.49.gtf.gz',
'echTel1' => 'echinops_telfairi/Echinops_telfairi.TENREC.49.gtf.gz',
'equCab2' => 'equus_caballus/Equus_caballus.EquCab2.49.gtf.gz',
'eriEur1' => 'erinaceus_europaeus/Erinaceus_europaeus.HEDGEHOG.49.gtf.gz',
'felCat3' => 'felis_catus/Felis_catus.CAT.49.gtf.gz',
'galGal3' => 'gallus_gallus/Gallus_gallus.WASHUC2.49.gtf.gz',
'gasAcu1' => 'gasterosteus_aculeatus/Gasterosteus_aculeatus.BROADS1.49.gtf.gz',
'hg18' => 'homo_sapiens/Homo_sapiens.NCBI36.49.gtf.gz',
'loxAfr1' => 'loxodonta_africana/Loxodonta_africana.BROADE1.49.gtf.gz',
'rheMac2' => 'macaca_mulatta/Macaca_mulatta.MMUL_1.49.gtf.gz',
'micMur0' => 'microcebus_murinus/Microcebus_murinus.micMur1.49.gtf.gz',
'monDom5' => 'monodelphis_domestica/Monodelphis_domestica.BROADO5.49.gtf.gz',
'mm9' => 'mus_musculus/Mus_musculus.NCBIM37.49.gtf.gz',
'myoLuc1' => 'myotis_lucifugus/Myotis_lucifugus.MICROBAT1.49.gtf.gz',
'ochPri0' => 'ochotona_princeps/Ochotona_princeps.pika.49.gtf.gz',
'ornAna1' => 'ornithorhynchus_anatinus/Ornithorhynchus_anatinus.OANA5.49.gtf.gz',
'oryCun1' => 'oryctolagus_cuniculus/Oryctolagus_cuniculus.RABBIT.49.gtf.gz',
'oryLat1' => 'oryzias_latipes/Oryzias_latipes.MEDAKA1.49.gtf.gz',
'otoGar1' => 'otolemur_garnettii/Otolemur_garnettii.BUSHBABY1.49.gtf.gz',
'panTro2' => 'pan_troglodytes/Pan_troglodytes.CHIMP2.1.49.gtf.gz',
'ponAbe2' => 'pongo_pygmaeus/Pongo_pygmaeus.PPYG2.49.gtf.gz',
'rn4' => 'rattus_norvegicus/Rattus_norvegicus.RGSC3.4.49.gtf.gz',
'sacCer1' => 'saccharomyces_cerevisiae/Saccharomyces_cerevisiae.SGD1.01.49.gtf.gz',
'sorAra0' => 'sorex_araneus/Sorex_araneus.COMMON_SHREW1.49.gtf',
'speTri0' => 'spermophilus_tridecemlineatus/Spermophilus_tridecemlineatus.SQUIRREL.49.gtf.gz',
'fr2' => 'takifugu_rubripes/Takifugu_rubripes.FUGU4.49.gtf.gz',
'tetNig1' => 'tetraodon_nigroviridis/Tetraodon_nigroviridis.TETRAODON7.49.gtf.gz',
'tupBel1' => 'tupaia_belangeri/Tupaia_belangeri.TREESHREW.49.gtf.gz',
'xenTro2' => 'xenopus_tropicalis/Xenopus_tropicalis.JGI4.1.49.gtf.gz',
);

# key is UCSC db name, result is FTP file name under the fasta directory
my %ensGeneFtpPeptideFileNames_49 = (
'aedAeg0' => 'aedes_aegypti/pep/Aedes_aegypti.AaegL1.49.pep.all.fa.gz',
'anoGam2' => 'anopheles_gambiae/pep/Anopheles_gambiae.AgamP3.49.pep.all.fa.gz',
'bosTau3' => 'bos_taurus/pep/Bos_taurus.Btau_3.1.49.pep.all.fa.gz',
'ce5' => 'caenorhabditis_elegans/pep/Caenorhabditis_elegans.WS180.49.pep.all.fa.gz',
'canFam2' => 'canis_familiaris/pep/Canis_familiaris.BROADD2.49.pep.all.fa.gz',
'cavPor2' => 'cavia_porcellus/pep/Cavia_porcellus.GUINEAPIG.49.pep.all.fa.gz',
'ci2' => 'ciona_intestinalis/pep/Ciona_intestinalis.JGI2.49.pep.all.fa.gz',
'cioSav2' => 'ciona_savignyi/pep/Ciona_savignyi.CSAV2.0.49.pep.all.fa.gz',
'danRer5' => 'danio_rerio/pep/Danio_rerio.ZFISH7.49.pep.all.fa.gz',
'dasNov1' => 'dasypus_novemcinctus/pep/Dasypus_novemcinctus.ARMA.49.pep.all.fa.gz',
'dm5' => 'drosophila_melanogaster/pep/Drosophila_melanogaster.BDGP5.4.49.pep.all.fa.gz',
'echTel1' => 'echinops_telfairi/pep/Echinops_telfairi.TENREC.49.pep.all.fa.gz',
'equCab2' => 'equus_caballus/pep/Equus_caballus.EquCab2.49.pep.all.fa.gz',
'eriEur1' => 'erinaceus_europaeus/pep/Erinaceus_europaeus.HEDGEHOG.49.pep.all.fa.gz',
'felCat3' => 'felis_catus/pep/Felis_catus.CAT.49.pep.all.fa.gz',
'galGal3' => 'gallus_gallus/pep/Gallus_gallus.WASHUC2.49.pep.all.fa.gz',
'gasAcu1' => 'gasterosteus_aculeatus/pep/Gasterosteus_aculeatus.BROADS1.49.pep.all.fa.gz',
'hg18' => 'homo_sapiens/pep/Homo_sapiens.NCBI36.49.pep.all.fa.gz',
'loxAfr1' => 'loxodonta_africana/pep/Loxodonta_africana.BROADE1.49.pep.all.fa.gz',
'rheMac2' => 'macaca_mulatta/pep/Macaca_mulatta.MMUL_1.49.pep.all.fa.gz',
'micMur0' => 'microcebus_murinus/pep/Microcebus_murinus.micMur1.49.pep.all.fa.gz',
'monDom5' => 'monodelphis_domestica/pep/Monodelphis_domestica.BROADO5.49.pep.all.fa.gz',
'mm9' => 'mus_musculus/pep/Mus_musculus.NCBIM37.49.pep.all.fa.gz',
'myoLuc0' => 'myotis_lucifugus/pep/Myotis_lucifugus.MICROBAT1.49.pep.all.fa.gz',
'ochPri0' => 'ochotona_princeps/pep/Ochotona_princeps.pika.49.pep.all.fa.gz',
'ornAna1' => 'ornithorhynchus_anatinus/pep/Ornithorhynchus_anatinus.OANA5.49.pep.all.fa.gz',
'oryCun1' => 'oryctolagus_cuniculus/pep/Oryctolagus_cuniculus.RABBIT.49.pep.all.fa.gz',
'oryLat1' => 'oryzias_latipes/pep/Oryzias_latipes.MEDAKA1.49.pep.all.fa.gz',
'otoGar1' => 'otolemur_garnettii/pep/Otolemur_garnettii.BUSHBABY1.49.pep.all.fa.gz',
'panTro2' => 'pan_troglodytes/pep/Pan_troglodytes.CHIMP2.1.49.pep.all.fa.gz',
'ponAbe2' => 'pongo_pygmaeus/pep/Pongo_pygmaeus.PPYG2.49.pep.all.fa.gz',
'rn4' => 'rattus_norvegicus/pep/Rattus_norvegicus.RGSC3.4.49.pep.all.fa.gz',
'sacCer1' => 'saccharomyces_cerevisiae/pep/Saccharomyces_cerevisiae.SGD1.01.49.pep.all.fa.gz',
'sorAra0' => 'sorex_araneus/pep/Sorex_araneus.COMMON_SHREW1.49.pep.all.fa.gz',
'speTri0' => 'spermophilus_tridecemlineatus/pep/Spermophilus_tridecemlineatus.SQUIRREL.49.pep.all.fa.gz',
'fr2' => 'takifugu_rubripes/pep/Takifugu_rubripes.FUGU4.49.pep.all.fa.gz',
'tetNig1' => 'tetraodon_nigroviridis/pep/Tetraodon_nigroviridis.TETRAODON7.49.pep.all.fa.gz',
'tupBel1' => 'tupaia_belangeri/pep/Tupaia_belangeri.TREESHREW.49.pep.all.fa.gz',
'xenTro2' => 'xenopus_tropicalis/pep/Xenopus_tropicalis.JGI4.1.49.pep.all.fa.gz',
);

#	directory name under release-49/mysql/ to find 'seq_region' and
#	'assembly' table copies for GeneScaffold coordinate conversions
my %ensGeneFtpMySqlFileNames_49 = (
'aedAeg0' => 'aedes_aegypti_core_49_1b',
'anoGam2' => 'anopheles_gambiae_core_49_3j',
'bosTau3' => 'bos_taurus_core_49_3f',
'ce5' => 'caenorhabditis_elegans_core_49_180a',
'canFam2' => 'canis_familiaris_core_49_2g',
'cavPor2' => 'cavia_porcellus_core_49_1c',
'ci2' => 'ciona_intestinalis_core_49_2i',
'cioSav2' => 'ciona_savignyi_core_49_2f',
'danRer5' => 'danio_rerio_core_49_7c',
'dasNov1' => 'dasypus_novemcinctus_core_49_1f',
'dm5' => 'drosophila_melanogaster_core_49_54',
'echTel1' => 'echinops_telfairi_core_49_1e',
'equCab2' => 'equus_caballus_core_49_2',
'eriEur1' => 'erinaceus_europaeus_core_49_1c',
'felCat3' => 'felis_catus_core_49_1c',
'galGal3' => 'gallus_gallus_core_49_2g',
'gasAcu1' => 'gasterosteus_aculeatus_core_49_1f',
'hg18' => 'homo_sapiens_core_49_36k',
'loxAfr1' => 'loxodonta_africana_core_49_1d',
'rheMac2' => 'macaca_mulatta_core_49_10h',
'micMur0' => 'microcebus_murinus_core_49_1',
'monDom5' => 'monodelphis_domestica_core_49_5d',
'mm9' => 'mus_musculus_core_49_37b',
'myoLuc0' => 'myotis_lucifugus_core_49_1e',
'ochPri0' => 'ochotona_princeps_core_49_1',
'ornAna1' => 'ornithorhynchus_anatinus_core_49_1f',
'oryCun1' => 'oryctolagus_cuniculus_core_49_1f',
'oryLat1' => 'oryzias_latipes_core_49_1e',
'otoGar1' => 'otolemur_garnettii_core_49_1c',
'panTro2' => 'pan_troglodytes_core_49_21h',
'ponAbe2' => 'pongo_pygmaeus_core_49_1',
'rn4' => 'rattus_norvegicus_core_49_34s',
'sacCer1' => 'saccharomyces_cerevisiae_core_49_1h',
'sorAra0' => 'sorex_araneus_core_49_1b',
'speTri0' => 'spermophilus_tridecemlineatus_core_49_1e',
'fr2' => 'takifugu_rubripes_core_49_4i',
'tetNig1' => 'tetraodon_nigroviridis_core_49_1k',
'tupBel1' => 'tupaia_belangeri_core_49_1d',
'xenTro2' => 'xenopus_tropicalis_core_49_41i',
);

# key is UCSC db name, result is FTP file name under the gtf directory
my %ensGeneGtfFileNames_50 = (
'aedAeg0' => 'aedes_aegypti/Aedes_aegypti.AaegL1.50.gtf.gz',
'anoGam2' => 'anopheles_gambiae/Anopheles_gambiae.AgamP3.50.gtf.gz',
'bosTau4' => 'bos_taurus/Bos_taurus.Btau_4.0.50.gtf.gz',
'ce6' => 'caenorhabditis_elegans/Caenorhabditis_elegans.WS190.50.gtf.gz',
'canFam2' => 'canis_familiaris/Canis_familiaris.BROADD2.50.gtf.gz',
'cavPor2' => 'cavia_porcellus/Cavia_porcellus.GUINEAPIG.50.gtf.gz',
'ci2' => 'ciona_intestinalis/Ciona_intestinalis.JGI2.50.gtf.gz',
'cioSav2' => 'ciona_savignyi/Ciona_savignyi.CSAV2.0.50.gtf.gz',
'danRer5' => 'danio_rerio/Danio_rerio.ZFISH7.50.gtf.gz',
'dasNov1' => 'dasypus_novemcinctus/Dasypus_novemcinctus.ARMA.50.gtf.gz',
'dm5' => 'drosophila_melanogaster/Drosophila_melanogaster.BDGP5.4.50.gtf.gz',
'echTel1' => 'echinops_telfairi/Echinops_telfairi.TENREC.50.gtf.gz',
'equCab2' => 'equus_caballus/Equus_caballus.EquCab2.50.gtf.gz',
'eriEur1' => 'erinaceus_europaeus/Erinaceus_europaeus.HEDGEHOG.50.gtf.gz',
'felCat3' => 'felis_catus/Felis_catus.CAT.50.gtf.gz',
'galGal3' => 'gallus_gallus/Gallus_gallus.WASHUC2.50.gtf.gz',
'gasAcu1' => 'gasterosteus_aculeatus/Gasterosteus_aculeatus.BROADS1.50.gtf.gz',
'hg18' => 'homo_sapiens/Homo_sapiens.NCBI36.50.gtf.gz',
'loxAfr1' => 'loxodonta_africana/Loxodonta_africana.BROADE1.50.gtf.gz',
'rheMac2' => 'macaca_mulatta/Macaca_mulatta.MMUL_1.50.gtf.gz',
'micMur1' => 'microcebus_murinus/Microcebus_murinus.micMur1.50.gtf.gz',
'monDom5' => 'monodelphis_domestica/Monodelphis_domestica.BROADO5.50.gtf.gz',
'mm9' => 'mus_musculus/Mus_musculus.NCBIM37.50.gtf.gz',
'myoLuc1' => 'myotis_lucifugus/Myotis_lucifugus.MICROBAT1.50.gtf.gz',
'ochPri2' => 'ochotona_princeps/Ochotona_princeps.pika.50.gtf.gz',
'ornAna1' => 'ornithorhynchus_anatinus/Ornithorhynchus_anatinus.OANA5.50.gtf.gz',
'oryCun1' => 'oryctolagus_cuniculus/Oryctolagus_cuniculus.RABBIT.50.gtf.gz',
'oryLat2' => 'oryzias_latipes/Oryzias_latipes.MEDAKA1.50.gtf.gz',
'otoGar1' => 'otolemur_garnettii/Otolemur_garnettii.BUSHBABY1.50.gtf.gz',
'panTro2' => 'pan_troglodytes/Pan_troglodytes.CHIMP2.1.50.gtf.gz',
'ponAbe2' => 'pongo_pygmaeus/Pongo_pygmaeus.PPYG2.50.gtf.gz',
'rn4' => 'rattus_norvegicus/Rattus_norvegicus.RGSC3.4.50.gtf.gz',
'sacCer1' => 'saccharomyces_cerevisiae/Saccharomyces_cerevisiae.SGD1.01.50.gtf.gz',
'sorAra0' => 'sorex_araneus/Sorex_araneus.COMMON_SHREW1.50.gtf.gz',
'speTri1' => 'spermophilus_tridecemlineatus/Spermophilus_tridecemlineatus.SQUIRREL.50.gtf.gz',
'fr2' => 'takifugu_rubripes/Takifugu_rubripes.FUGU4.50.gtf.gz',
'tetNig2' => 'tetraodon_nigroviridis/Tetraodon_nigroviridis.TETRAODON8.50.gtf.gz',
'tupBel1' => 'tupaia_belangeri/Tupaia_belangeri.TREESHREW.50.gtf.gz',
'xenTro2' => 'xenopus_tropicalis/Xenopus_tropicalis.JGI4.1.50.gtf.gz',
);

# key is UCSC db name, result is FTP file name under the fasta directory
my %ensGeneFtpPeptideFileNames_50 = (
'aedAeg0' => 'aedes_aegypti/pep/Aedes_aegypti.AaegL1.50.pep.all.fa.gz',
'anoGam2' => 'anopheles_gambiae/pep/Anopheles_gambiae.AgamP3.50.pep.all.fa.gz',
'bosTau4' => 'bos_taurus/pep/Bos_taurus.Btau_4.0.50.pep.all.fa.gz',
'ce6' => 'caenorhabditis_elegans/pep/Caenorhabditis_elegans.WS190.50.pep.all.fa.gz',
'canFam2' => 'canis_familiaris/pep/Canis_familiaris.BROADD2.50.pep.all.fa.gz',
'cavPor2' => 'cavia_porcellus/pep/Cavia_porcellus.GUINEAPIG.50.pep.all.fa.gz',
'ci2' => 'ciona_intestinalis/pep/Ciona_intestinalis.JGI2.50.pep.all.fa.gz',
'cioSav2' => 'ciona_savignyi/pep/Ciona_savignyi.CSAV2.0.50.pep.all.fa.gz',
'danRer5' => 'danio_rerio/pep/Danio_rerio.ZFISH7.50.pep.all.fa.gz',
'dasNov1' => 'dasypus_novemcinctus/pep/Dasypus_novemcinctus.ARMA.50.pep.all.fa.gz',
'dm5' => 'drosophila_melanogaster/pep/Drosophila_melanogaster.BDGP5.4.50.pep.all.fa.gz',
'echTel1' => 'echinops_telfairi/pep/Echinops_telfairi.TENREC.50.pep.all.fa.gz',
'equCab2' => 'equus_caballus/pep/Equus_caballus.EquCab2.50.pep.all.fa.gz',
'eriEur1' => 'erinaceus_europaeus/pep/Erinaceus_europaeus.HEDGEHOG.50.pep.all.fa.gz',
'felCat3' => 'felis_catus/pep/Felis_catus.CAT.50.pep.all.fa.gz',
'galGal3' => 'gallus_gallus/pep/Gallus_gallus.WASHUC2.50.pep.all.fa.gz',
'gasAcu1' => 'gasterosteus_aculeatus/pep/Gasterosteus_aculeatus.BROADS1.50.pep.all.fa.gz',
'hg18' => 'homo_sapiens/pep/Homo_sapiens.NCBI36.50.pep.all.fa.gz',
'loxAfr1' => 'loxodonta_africana/pep/Loxodonta_africana.BROADE1.50.pep.all.fa.gz',
'rheMac2' => 'macaca_mulatta/pep/Macaca_mulatta.MMUL_1.50.pep.all.fa.gz',
'micMur1' => 'microcebus_murinus/pep/Microcebus_murinus.micMur1.50.pep.all.fa.gz',
'monDom5' => 'monodelphis_domestica/pep/Monodelphis_domestica.BROADO5.50.pep.all.fa.gz',
'mm9' => 'mus_musculus/pep/Mus_musculus.NCBIM37.50.pep.all.fa.gz',
'myoLuc1' => 'myotis_lucifugus/pep/Myotis_lucifugus.MICROBAT1.50.pep.all.fa.gz',
'ochPri2' => 'ochotona_princeps/pep/Ochotona_princeps.pika.50.pep.all.fa.gz',
'ornAna1' => 'ornithorhynchus_anatinus/pep/Ornithorhynchus_anatinus.OANA5.50.pep.all.fa.gz',
'oryCun1' => 'oryctolagus_cuniculus/pep/Oryctolagus_cuniculus.RABBIT.50.pep.all.fa.gz',
'oryLat2' => 'oryzias_latipes/pep/Oryzias_latipes.MEDAKA1.50.pep.all.fa.gz',
'otoGar1' => 'otolemur_garnettii/pep/Otolemur_garnettii.BUSHBABY1.50.pep.all.fa.gz',
'panTro2' => 'pan_troglodytes/pep/Pan_troglodytes.CHIMP2.1.50.pep.all.fa.gz',
'ponAbe2' => 'pongo_pygmaeus/pep/Pongo_pygmaeus.PPYG2.50.pep.all.fa.gz',
'rn4' => 'rattus_norvegicus/pep/Rattus_norvegicus.RGSC3.4.50.pep.all.fa.gz',
'sacCer1' => 'saccharomyces_cerevisiae/pep/Saccharomyces_cerevisiae.SGD1.01.50.pep.all.fa.gz',
'sorAra0' => 'sorex_araneus/pep/Sorex_araneus.COMMON_SHREW1.50.pep.all.fa.gz',
'speTri1' => 'spermophilus_tridecemlineatus/pep/Spermophilus_tridecemlineatus.SQUIRREL.50.pep.all.fa.gz',
'fr2' => 'takifugu_rubripes/pep/Takifugu_rubripes.FUGU4.50.pep.all.fa.gz',
'tetNig2' => 'tetraodon_nigroviridis/pep/Tetraodon_nigroviridis.TETRAODON8.50.pep.all.fa.gz',
'tupBel1' => 'tupaia_belangeri/pep/Tupaia_belangeri.TREESHREW.50.pep.all.fa.gz',
'xenTro2' => 'xenopus_tropicalis/pep/Xenopus_tropicalis.JGI4.1.50.pep.all.fa.gz',
);

#	directory name under release-50/mysql/ to find 'seq_region' and
#	'assembly' table copies for GeneScaffold coordinate conversions
my %ensGeneFtpMySqlFileNames_50 = (
'aedAeg0' => 'aedes_aegypti_core_50_1c',
'anoGam2' => 'anopheles_gambiae_core_50_3k',
'bosTau4' => 'bos_taurus_core_50_4',
'ce6' => 'caenorhabditis_elegans_core_50_190',
'canFam2' => 'canis_familiaris_core_50_2h',
'cavPor2' => 'cavia_porcellus_core_50_1d',
'ci2' => 'ciona_intestinalis_core_50_2j',
'cioSav2' => 'ciona_savignyi_core_50_2g',
'danRer5' => 'danio_rerio_core_50_7d',
'dasNov1' => 'dasypus_novemcinctus_core_50_1g',
'dm5' => 'drosophila_melanogaster_core_50_54a',
'echTel1' => 'echinops_telfairi_core_50_1f',
'equCab2' => 'equus_caballus_core_50_2a',
'eriEur1' => 'erinaceus_europaeus_core_50_1d',
'felCat3' => 'felis_catus_core_50_1d',
'galGal3' => 'gallus_gallus_core_50_2h',
'gasAcu1' => 'gasterosteus_aculeatus_core_50_1g',
'hg18' => 'homo_sapiens_core_50_36l',
'loxAfr1' => 'loxodonta_africana_core_50_1e',
'rheMac2' => 'macaca_mulatta_core_50_10i',
'micMur1' => 'microcebus_murinus_core_50_1a',
'monDom5' => 'monodelphis_domestica_core_50_5e',
'mm9' => 'mus_musculus_core_50_37c',
'myoLuc1' => 'myotis_lucifugus_core_50_1f',
'ochPri2' => 'ochotona_princeps_core_50_1a',
'ornAna1' => 'ornithorhynchus_anatinus_core_50_1g',
'oryCun1' => 'oryctolagus_cuniculus_core_50_1g',
'oryLat2' => 'oryzias_latipes_core_50_1f',
'otoGar1' => 'otolemur_garnettii_core_50_1d',
'panTro2' => 'pan_troglodytes_core_50_21i',
'ponAbe2' => 'pongo_pygmaeus_core_50_1a',
'rn4' => 'rattus_norvegicus_core_50_34t',
'sacCer1' => 'saccharomyces_cerevisiae_core_50_1i',
'sorAra0' => 'sorex_araneus_core_50_1d',
'speTri1' => 'spermophilus_tridecemlineatus_core_50_1f',
'fr2' => 'takifugu_rubripes_core_50_4j',
'tetNig2' => 'tetraodon_nigroviridis_core_50_8',
'tupBel1' => 'tupaia_belangeri_core_50_1e',
'xenTro2' => 'xenopus_tropicalis_core_50_41j',
);

# key is UCSC db name, result is FTP file name under the gtf directory
my %ensGeneGtfFileNames_51 = (
'aedAeg0' => 'aedes_aegypti/Aedes_aegypti.AaegL1.51.gtf.gz',
'anoGam2' => 'anopheles_gambiae/Anopheles_gambiae.AgamP3.51.gtf.gz',
'bosTau4' => 'bos_taurus/Bos_taurus.Btau_4.0.51.gtf.gz',
'ce6' => 'caenorhabditis_elegans/Caenorhabditis_elegans.WS190.51.gtf.gz',
'canFam2' => 'canis_familiaris/Canis_familiaris.BROADD2.51.gtf.gz',
'cavPor3' => 'cavia_porcellus/Cavia_porcellus.cavPor3.51.gtf.gz',
'ci2' => 'ciona_intestinalis/Ciona_intestinalis.JGI2.51.gtf.gz',
'cioSav2' => 'ciona_savignyi/Ciona_savignyi.CSAV2.0.51.gtf.gz',
'danRer5' => 'danio_rerio/Danio_rerio.ZFISH7.51.gtf.gz',
'dasNov1' => 'dasypus_novemcinctus/Dasypus_novemcinctus.ARMA.51.gtf.gz',
'dipOrd1' => 'dipodomys_ordii/Dipodomys_ordii.dipOrd1.51.gtf.gz',
'dm5' => 'drosophila_melanogaster/Drosophila_melanogaster.BDGP5.4.51.gtf.gz',
'echTel1' => 'echinops_telfairi/Echinops_telfairi.TENREC.51.gtf.gz',
'equCab2' => 'equus_caballus/Equus_caballus.EquCab2.51.gtf.gz',
'eriEur1' => 'erinaceus_europaeus/Erinaceus_europaeus.HEDGEHOG.51.gtf.gz',
'felCat3' => 'felis_catus/Felis_catus.CAT.51.gtf.gz',
'galGal3' => 'gallus_gallus/Gallus_gallus.WASHUC2.51.gtf.gz',
'gasAcu1' => 'gasterosteus_aculeatus/Gasterosteus_aculeatus.BROADS1.51.gtf.gz',
'hg18' => 'homo_sapiens/Homo_sapiens.NCBI36.51.gtf.gz',
'loxAfr1' => 'loxodonta_africana/Loxodonta_africana.BROADE1.51.gtf.gz',
'rheMac2' => 'macaca_mulatta/Macaca_mulatta.MMUL_1.51.gtf.gz',
'micMur1' => 'microcebus_murinus/Microcebus_murinus.micMur1.51.gtf.gz',
'monDom5' => 'monodelphis_domestica/Monodelphis_domestica.BROADO5.51.gtf.gz',
'mm9' => 'mus_musculus/Mus_musculus.NCBIM37.51.gtf.gz',
'myoLuc1' => 'myotis_lucifugus/Myotis_lucifugus.MICROBAT1.51.gtf.gz',
'ochPri2' => 'ochotona_princeps/Ochotona_princeps.pika.51.gtf.gz',
'ornAna1' => 'ornithorhynchus_anatinus/Ornithorhynchus_anatinus.OANA5.51.gtf.gz',
'oryCun1' => 'oryctolagus_cuniculus/Oryctolagus_cuniculus.RABBIT.51.gtf.gz',
'oryLat2' => 'oryzias_latipes/Oryzias_latipes.MEDAKA1.51.gtf.gz',
'otoGar1' => 'otolemur_garnettii/Otolemur_garnettii.BUSHBABY1.51.gtf.gz',
'panTro2' => 'pan_troglodytes/Pan_troglodytes.CHIMP2.1.51.gtf.gz',
'ponAbe2' => 'pongo_pygmaeus/Pongo_pygmaeus.PPYG2.51.gtf.gz',
'proCap1' => 'procavia_capensis/Procavia_capensis.proCap1.51.gtf.gz',
'pteVam1' => 'pteropus_vampyrus/Pteropus_vampyrus.pteVam1.51.gtf.gz',
'rn4' => 'rattus_norvegicus/Rattus_norvegicus.RGSC3.4.51.gtf.gz',
'sacCer1' => 'saccharomyces_cerevisiae/Saccharomyces_cerevisiae.SGD1.01.51.gtf.gz',
'sorAra1' => 'sorex_araneus/Sorex_araneus.COMMON_SHREW1.51.gtf.gz',
'speTri1' => 'spermophilus_tridecemlineatus/Spermophilus_tridecemlineatus.SQUIRREL.51.gtf.gz',
'fr2' => 'takifugu_rubripes/Takifugu_rubripes.FUGU4.51.gtf.gz',
'tarSyr1' => 'tarsius_syrichta/Tarsius_syrichta.tarSyr1.51.gtf.gz',
'tetNig2' => 'tetraodon_nigroviridis/Tetraodon_nigroviridis.TETRAODON8.51.gtf.gz',
'tupBel1' => 'tupaia_belangeri/Tupaia_belangeri.TREESHREW.51.gtf.gz',
'turTru1' => 'tursiops_truncatus/Tursiops_truncatus.turTru1.51.gtf.gz',
'vicPac1' => 'vicugna_pacos/Vicugna_pacos.vicPac1.51.gtf.gz',
'xenTro2' => 'xenopus_tropicalis/Xenopus_tropicalis.JGI4.1.51.gtf.gz',
);

# key is UCSC db name, result is FTP file name under the fasta directory
my %ensGeneFtpPeptideFileNames_51 = (
'aedAeg0' => 'aedes_aegypti/pep/Aedes_aegypti.AaegL1.51.pep.all.fa.gz',
'anoGam2' => 'anopheles_gambiae/pep/Anopheles_gambiae.AgamP3.51.pep.all.fa.gz',
'bosTau4' => 'bos_taurus/pep/Bos_taurus.Btau_4.0.51.pep.all.fa.gz',
'ce6' => 'caenorhabditis_elegans/pep/Caenorhabditis_elegans.WS190.51.pep.all.fa.gz',
'canFam2' => 'canis_familiaris/pep/Canis_familiaris.BROADD2.51.pep.all.fa.gz',
'cavPor3' => 'cavia_porcellus/pep/Cavia_porcellus.cavPor3.51.pep.all.fa.gz',
'ci2' => 'ciona_intestinalis/pep/Ciona_intestinalis.JGI2.51.pep.all.fa.gz',
'cioSav2' => 'ciona_savignyi/pep/Ciona_savignyi.CSAV2.0.51.pep.all.fa.gz',
'danRer5' => 'danio_rerio/pep/Danio_rerio.ZFISH7.51.pep.all.fa.gz',
'dasNov1' => 'dasypus_novemcinctus/pep/Dasypus_novemcinctus.ARMA.51.pep.all.fa.gz',
'dipOrd1' => 'dipodomys_ordii/pep/Dipodomys_ordii.dipOrd1.51.pep.all.fa.gz',
'dm5' => 'drosophila_melanogaster/pep/Drosophila_melanogaster.BDGP5.4.51.pep.all.fa.gz',
'echTel1' => 'echinops_telfairi/pep/Echinops_telfairi.TENREC.51.pep.all.fa.gz',
'equCab2' => 'equus_caballus/pep/Equus_caballus.EquCab2.51.pep.all.fa.gz',
'eriEur1' => 'erinaceus_europaeus/pep/Erinaceus_europaeus.HEDGEHOG.51.pep.all.fa.gz',
'felCat3' => 'felis_catus/pep/Felis_catus.CAT.51.pep.all.fa.gz',
'galGal3' => 'gallus_gallus/pep/Gallus_gallus.WASHUC2.51.pep.all.fa.gz',
'gasAcu1' => 'gasterosteus_aculeatus/pep/Gasterosteus_aculeatus.BROADS1.51.pep.all.fa.gz',
'hg18' => 'homo_sapiens/pep/Homo_sapiens.NCBI36.51.pep.all.fa.gz',
'loxAfr1' => 'loxodonta_africana/pep/Loxodonta_africana.BROADE1.51.pep.all.fa.gz',
'rheMac2' => 'macaca_mulatta/pep/Macaca_mulatta.MMUL_1.51.pep.all.fa.gz',
'micMur1' => 'microcebus_murinus/pep/Microcebus_murinus.micMur1.51.pep.all.fa.gz',
'monDom5' => 'monodelphis_domestica/pep/Monodelphis_domestica.BROADO5.51.pep.all.fa.gz',
'mm9' => 'mus_musculus/pep/Mus_musculus.NCBIM37.51.pep.all.fa.gz',
'myoLuc1' => 'myotis_lucifugus/pep/Myotis_lucifugus.MICROBAT1.51.pep.all.fa.gz',
'ochPri2' => 'ochotona_princeps/pep/Ochotona_princeps.pika.51.pep.all.fa.gz',
'ornAna1' => 'ornithorhynchus_anatinus/pep/Ornithorhynchus_anatinus.OANA5.51.pep.all.fa.gz',
'oryCun1' => 'oryctolagus_cuniculus/pep/Oryctolagus_cuniculus.RABBIT.51.pep.all.fa.gz',
'oryLat2' => 'oryzias_latipes/pep/Oryzias_latipes.MEDAKA1.51.pep.all.fa.gz',
'otoGar1' => 'otolemur_garnettii/pep/Otolemur_garnettii.BUSHBABY1.51.pep.all.fa.gz',
'panTro2' => 'pan_troglodytes/pep/Pan_troglodytes.CHIMP2.1.51.pep.all.fa.gz',
'ponAbe2' => 'pongo_pygmaeus/pep/Pongo_pygmaeus.PPYG2.51.pep.all.fa.gz',
'proCap1' => 'procavia_capensis/pep/Procavia_capensis.proCap1.51.pep.all.fa.gz',
'pteVam1' => 'pteropus_vampyrus/pep/Pteropus_vampyrus.pteVam1.51.pep.all.fa.gz',
'rn4' => 'rattus_norvegicus/pep/Rattus_norvegicus.RGSC3.4.51.pep.all.fa.gz',
'sacCer1' => 'saccharomyces_cerevisiae/pep/Saccharomyces_cerevisiae.SGD1.01.51.pep.all.fa.gz',
'sorAra1' => 'sorex_araneus/pep/Sorex_araneus.COMMON_SHREW1.51.pep.all.fa.gz',
'speTri1' => 'spermophilus_tridecemlineatus/pep/Spermophilus_tridecemlineatus.SQUIRREL.51.pep.all.fa.gz',
'fr2' => 'takifugu_rubripes/pep/Takifugu_rubripes.FUGU4.51.pep.all.fa.gz',
'tarSyr1' => 'tarsius_syrichta/pep/Tarsius_syrichta.tarSyr1.51.pep.all.fa.gz',
'tetNig2' => 'tetraodon_nigroviridis/pep/Tetraodon_nigroviridis.TETRAODON8.51.pep.all.fa.gz',
'tupBel1' => 'tupaia_belangeri/pep/Tupaia_belangeri.TREESHREW.51.pep.all.fa.gz',
'turTru1' => 'tursiops_truncatus/pep/Tursiops_truncatus.turTru1.51.pep.all.fa.gz',
'vicPac1' => 'vicugna_pacos/pep/Vicugna_pacos.vicPac1.51.pep.all.fa.gz',
'xenTro2' => 'xenopus_tropicalis/pep/Xenopus_tropicalis.JGI4.1.51.pep.all.fa.gz',
);

#	directory name under release-51/mysql/ to find 'seq_region' and
#	'assembly' table copies for GeneScaffold coordinate conversions
my %ensGeneFtpMySqlFileNames_51 = (
'aedAeg0' => 'aedes_aegypti_core_51_1c',
'anoGam2' => 'anopheles_gambiae_core_51_3k',
'bosTau4' => 'bos_taurus_core_51_4a',
'ce6' => 'caenorhabditis_elegans_core_51_190',
'canFam2' => 'canis_familiaris_core_51_2i',
'cavPor3' => 'cavia_porcellus_core_51_3',
'ci2' => 'ciona_intestinalis_core_51_2k',
'cioSav2' => 'ciona_savignyi_core_51_2g',
'danRer5' => 'danio_rerio_core_51_7d',
'dasNov1' => 'dasypus_novemcinctus_core_51_1g',
'dipOrd1' => 'dipodomys_ordii_core_51_1',
'dm5' => 'drosophila_melanogaster_core_51_54a',
'echTel1' => 'echinops_telfairi_core_51_1f',
'equCab2' => 'equus_caballus_core_51_2a',
'eriEur1' => 'erinaceus_europaeus_core_51_1d',
'felCat3' => 'felis_catus_core_51_1e',
'galGal3' => 'gallus_gallus_core_51_2i',
'gasAcu1' => 'gasterosteus_aculeatus_core_51_1h',
'hg18' => 'homo_sapiens_core_51_36m',
'loxAfr1' => 'loxodonta_africana_core_51_1f',
'rheMac2' => 'macaca_mulatta_core_51_10i',
'micMur1' => 'microcebus_murinus_core_51_1a',
'monDom5' => 'monodelphis_domestica_core_51_5f',
'mm9' => 'mus_musculus_core_51_37d',
'myoLuc1' => 'myotis_lucifugus_core_51_1f',
'ochPri2' => 'ochotona_princeps_core_51_1b',
'ornAna1' => 'ornithorhynchus_anatinus_core_51_1h',
'oryCun1' => 'oryctolagus_cuniculus_core_51_1g',
'oryLat2' => 'oryzias_latipes_core_51_1g',
'otoGar1' => 'otolemur_garnettii_core_51_1d',
'panTro2' => 'pan_troglodytes_core_51_21i',
'ponAbe2' => 'pongo_pygmaeus_core_51_1b',
'proCap1' => 'procavia_capensis_core_51_1',
'pteVam1' => 'pteropus_vampyrus_core_51_1',
'rn4' => 'rattus_norvegicus_core_51_34t',
'sacCer1' => 'saccharomyces_cerevisiae_core_51_1i',
'sorAra1' => 'sorex_araneus_core_51_1d',
'speTri1' => 'spermophilus_tridecemlineatus_core_51_1f',
'fr2' => 'takifugu_rubripes_core_51_4j',
'tarSyr1' => 'tarsius_syrichta_core_51_1',
'tetNig2' => 'tetraodon_nigroviridis_core_51_8',
'tupBel1' => 'tupaia_belangeri_core_51_1e',
'turTru1' => 'tursiops_truncatus_core_51_1',
'vicPac1' => 'vicugna_pacos_core_51_1',
'xenTro2' => 'xenopus_tropicalis_core_51_41j',
);

# key is UCSC db name, result is FTP file name under the gtf directory
my %ensGeneGtfFileNames_52 = (
'aedAeg0' => 'aedes_aegypti/Aedes_aegypti.AaegL1.52.gtf.gz',
'anoGam2' => 'anopheles_gambiae/Anopheles_gambiae.AgamP3.52.gtf.gz',
'bosTau4' => 'bos_taurus/Bos_taurus.Btau_4.0.52.gtf.gz',
'ce6' => 'caenorhabditis_elegans/Caenorhabditis_elegans.WS190.52.gtf.gz',
'canFam2' => 'canis_familiaris/Canis_familiaris.BROADD2.52.gtf.gz',
'cavPor3' => 'cavia_porcellus/Cavia_porcellus.cavPor3.52.gtf.gz',
'ci2' => 'ciona_intestinalis/Ciona_intestinalis.JGI2.52.gtf.gz',
'cioSav2' => 'ciona_savignyi/Ciona_savignyi.CSAV2.0.52.gtf.gz',
'danRer5' => 'danio_rerio/Danio_rerio.ZFISH7.52.gtf.gz',
'dasNov1' => 'dasypus_novemcinctus/Dasypus_novemcinctus.ARMA.52.gtf.gz',
'dipOrd1' => 'dipodomys_ordii/Dipodomys_ordii.dipOrd1.52.gtf.gz',
'dm5' => 'drosophila_melanogaster/Drosophila_melanogaster.BDGP5.4.52.gtf.gz',
'echTel1' => 'echinops_telfairi/Echinops_telfairi.TENREC.52.gtf.gz',
'equCab2' => 'equus_caballus/Equus_caballus.EquCab2.52.gtf.gz',
'eriEur1' => 'erinaceus_europaeus/Erinaceus_europaeus.HEDGEHOG.52.gtf.gz',
'felCat3' => 'felis_catus/Felis_catus.CAT.52.gtf.gz',
'galGal3' => 'gallus_gallus/Gallus_gallus.WASHUC2.52.gtf.gz',
'gasAcu1' => 'gasterosteus_aculeatus/Gasterosteus_aculeatus.BROADS1.52.gtf.gz',
'gorGor1' => 'gorilla_gorilla/Gorilla_gorilla.gorGor1.52.gtf.gz',
'hg18' => 'homo_sapiens/Homo_sapiens.NCBI36.52.gtf.gz',
'loxAfr1' => 'loxodonta_africana/Loxodonta_africana.BROADE1.52.gtf.gz',
'rheMac2' => 'macaca_mulatta/Macaca_mulatta.MMUL_1.52.gtf.gz',
'micMur1' => 'microcebus_murinus/Microcebus_murinus.micMur1.52.gtf.gz',
'monDom5' => 'monodelphis_domestica/Monodelphis_domestica.BROADO5.52.gtf.gz',
'mm9' => 'mus_musculus/Mus_musculus.NCBIM37.52.gtf.gz',
'myoLuc1' => 'myotis_lucifugus/Myotis_lucifugus.MICROBAT1.52.gtf.gz',
'ochPri2' => 'ochotona_princeps/Ochotona_princeps.pika.52.gtf.gz',
'ornAna1' => 'ornithorhynchus_anatinus/Ornithorhynchus_anatinus.OANA5.52.gtf.gz',
'oryCun1' => 'oryctolagus_cuniculus/Oryctolagus_cuniculus.RABBIT.52.gtf.gz',
'oryLat2' => 'oryzias_latipes/Oryzias_latipes.MEDAKA1.52.gtf.gz',
'otoGar1' => 'otolemur_garnettii/Otolemur_garnettii.BUSHBABY1.52.gtf.gz',
'panTro2' => 'pan_troglodytes/Pan_troglodytes.CHIMP2.1.52.gtf.gz',
'ponAbe2' => 'pongo_pygmaeus/Pongo_pygmaeus.PPYG2.52.gtf.gz',
'proCap1' => 'procavia_capensis/Procavia_capensis.proCap1.52.gtf.gz',
'pteVam1' => 'pteropus_vampyrus/Pteropus_vampyrus.pteVam1.52.gtf.gz',
'rn4' => 'rattus_norvegicus/Rattus_norvegicus.RGSC3.4.52.gtf.gz',
'sacCer2' => 'saccharomyces_cerevisiae/Saccharomyces_cerevisiae.SGD1.01.52.gtf.gz',
'sorAra1' => 'sorex_araneus/Sorex_araneus.COMMON_SHREW1.52.gtf.gz',
'speTri1' => 'spermophilus_tridecemlineatus/Spermophilus_tridecemlineatus.SQUIRREL.52.gtf.gz',
'fr2' => 'takifugu_rubripes/Takifugu_rubripes.FUGU4.52.gtf.gz',
'tarSyr1' => 'tarsius_syrichta/Tarsius_syrichta.tarSyr1.52.gtf.gz',
'tetNig2' => 'tetraodon_nigroviridis/Tetraodon_nigroviridis.TETRAODON8.52.gtf.gz',
'tupBel1' => 'tupaia_belangeri/Tupaia_belangeri.TREESHREW.52.gtf.gz',
'turTru1' => 'tursiops_truncatus/Tursiops_truncatus.turTru1.52.gtf.gz',
'vicPac1' => 'vicugna_pacos/Vicugna_pacos.vicPac1.52.gtf.gz',
'xenTro2' => 'xenopus_tropicalis/Xenopus_tropicalis.JGI4.1.52.gtf.gz',
);


# key is UCSC db name, result is FTP file name under the fasta directory
my %ensGeneFtpPeptideFileNames_52 = (
'aedAeg0' => 'aedes_aegypti/pep/Aedes_aegypti.AaegL1.52.pep.all.fa.gz',
'anoGam2' => 'anopheles_gambiae/pep/Anopheles_gambiae.AgamP3.52.pep.all.fa.gz',
'bosTau4' => 'bos_taurus/pep/Bos_taurus.Btau_4.0.52.pep.all.fa.gz',
'ce6' => 'caenorhabditis_elegans/pep/Caenorhabditis_elegans.WS190.52.pep.all.fa.gz',
'canFam2' => 'canis_familiaris/pep/Canis_familiaris.BROADD2.52.pep.all.fa.gz',
'cavPor3' => 'cavia_porcellus/pep/Cavia_porcellus.cavPor3.52.pep.all.fa.gz',
'ci2' => 'ciona_intestinalis/pep/Ciona_intestinalis.JGI2.52.pep.all.fa.gz',
'cioSav2' => 'ciona_savignyi/pep/Ciona_savignyi.CSAV2.0.52.pep.all.fa.gz',
'danRer5' => 'danio_rerio/pep/Danio_rerio.ZFISH7.52.pep.all.fa.gz',
'dasNov1' => 'dasypus_novemcinctus/pep/Dasypus_novemcinctus.ARMA.52.pep.all.fa.gz',
'dipOrd1' => 'dipodomys_ordii/pep/Dipodomys_ordii.dipOrd1.52.pep.all.fa.gz',
'dm5' => 'drosophila_melanogaster/pep/Drosophila_melanogaster.BDGP5.4.52.pep.all.fa.gz',
'echTel1' => 'echinops_telfairi/pep/Echinops_telfairi.TENREC.52.pep.all.fa.gz',
'equCab2' => 'equus_caballus/pep/Equus_caballus.EquCab2.52.pep.all.fa.gz',
'eriEur1' => 'erinaceus_europaeus/pep/Erinaceus_europaeus.HEDGEHOG.52.pep.all.fa.gz',
'felCat3' => 'felis_catus/pep/Felis_catus.CAT.52.pep.all.fa.gz',
'galGal3' => 'gallus_gallus/pep/Gallus_gallus.WASHUC2.52.pep.all.fa.gz',
'gasAcu1' => 'gasterosteus_aculeatus/pep/Gasterosteus_aculeatus.BROADS1.52.pep.all.fa.gz',
'gorGor1' => 'gorilla_gorilla/pep/Gorilla_gorilla.gorGor1.52.pep.all.fa.gz',
'hg18' => 'homo_sapiens/pep/Homo_sapiens.NCBI36.52.pep.all.fa.gz',
'loxAfr1' => 'loxodonta_africana/pep/Loxodonta_africana.BROADE1.52.pep.all.fa.gz',
'rheMac2' => 'macaca_mulatta/pep/Macaca_mulatta.MMUL_1.52.pep.all.fa.gz',
'micMur1' => 'microcebus_murinus/pep/Microcebus_murinus.micMur1.52.pep.all.fa.gz',
'monDom5' => 'monodelphis_domestica/pep/Monodelphis_domestica.BROADO5.52.pep.all.fa.gz',
'mm9' => 'mus_musculus/pep/Mus_musculus.NCBIM37.52.pep.all.fa.gz',
'myoLuc1' => 'myotis_lucifugus/pep/Myotis_lucifugus.MICROBAT1.52.pep.all.fa.gz',
'ochPri2' => 'ochotona_princeps/pep/Ochotona_princeps.pika.52.pep.all.fa.gz',
'ornAna1' => 'ornithorhynchus_anatinus/pep/Ornithorhynchus_anatinus.OANA5.52.pep.all.fa.gz',
'oryCun1' => 'oryctolagus_cuniculus/pep/Oryctolagus_cuniculus.RABBIT.52.pep.all.fa.gz',
'oryLat2' => 'oryzias_latipes/pep/Oryzias_latipes.MEDAKA1.52.pep.all.fa.gz',
'otoGar1' => 'otolemur_garnettii/pep/Otolemur_garnettii.BUSHBABY1.52.pep.all.fa.gz',
'panTro2' => 'pan_troglodytes/pep/Pan_troglodytes.CHIMP2.1.52.pep.all.fa.gz',
'ponAbe2' => 'pongo_pygmaeus/pep/Pongo_pygmaeus.PPYG2.52.pep.all.fa.gz',
'proCap1' => 'procavia_capensis/pep/Procavia_capensis.proCap1.52.pep.all.fa.gz',
'pteVam1' => 'pteropus_vampyrus/pep/Pteropus_vampyrus.pteVam1.52.pep.all.fa.gz',
'rn4' => 'rattus_norvegicus/pep/Rattus_norvegicus.RGSC3.4.52.pep.all.fa.gz',
'sacCer2' => 'saccharomyces_cerevisiae/pep/Saccharomyces_cerevisiae.SGD1.01.52.pep.all.fa.gz',
'sorAra1' => 'sorex_araneus/pep/Sorex_araneus.COMMON_SHREW1.52.pep.all.fa.gz',
'speTri1' => 'spermophilus_tridecemlineatus/pep/Spermophilus_tridecemlineatus.SQUIRREL.52.pep.all.fa.gz',
'fr2' => 'takifugu_rubripes/pep/Takifugu_rubripes.FUGU4.52.pep.all.fa.gz',
'tarSyr1' => 'tarsius_syrichta/pep/Tarsius_syrichta.tarSyr1.52.pep.all.fa.gz',
'tetNig2' => 'tetraodon_nigroviridis/pep/Tetraodon_nigroviridis.TETRAODON8.52.pep.all.fa.gz',
'tupBel1' => 'tupaia_belangeri/pep/Tupaia_belangeri.TREESHREW.52.pep.all.fa.gz',
'turTru1' => 'tursiops_truncatus/pep/Tursiops_truncatus.turTru1.52.pep.all.fa.gz',
'vicPac1' => 'vicugna_pacos/pep/Vicugna_pacos.vicPac1.52.pep.all.fa.gz',
'xenTro2' => 'xenopus_tropicalis/pep/Xenopus_tropicalis.JGI4.1.52.pep.all.fa.gz',
);

#	directory name under release-52/mysql/ to find 'seq_region' and
#	'assembly' table copies for GeneScaffold coordinate conversions
my %ensGeneFtpMySqlFileNames_52 = (
'aedAeg0' => 'aedes_aegypti_core_52_1d',
'anoGam2' => 'anopheles_gambiae_core_52_3k',
'bosTau4' => 'bos_taurus_core_52_4b',
'ce6' => 'caenorhabditis_elegans_core_52_190',
'canFam2' => 'canis_familiaris_core_52_2j',
'cavPor3' => 'cavia_porcellus_core_52_3a',
'ci2' => 'ciona_intestinalis_core_52_2l',
'cioSav2' => 'ciona_savignyi_core_52_2h',
'danRer5' => 'danio_rerio_core_52_7e',
'dasNov1' => 'dasypus_novemcinctus_core_52_1h',
'dipOrd1' => 'dipodomys_ordii_core_52_1a',
'dm5' => 'drosophila_melanogaster_core_52_54a',
'echTel1' => 'echinops_telfairi_core_52_1g',
'equCab2' => 'equus_caballus_core_52_2b',
'eriEur1' => 'erinaceus_europaeus_core_52_1e',
'felCat3' => 'felis_catus_core_52_1f',
'galGal3' => 'gallus_gallus_core_52_2j',
'gasAcu1' => 'gasterosteus_aculeatus_core_52_1i',
'gorGor1' => 'gorilla_gorilla_core_52_1',
'hg18' => 'homo_sapiens_core_52_36n',
'loxAfr1' => 'loxodonta_africana_core_52_1g',
'rheMac2' => 'macaca_mulatta_core_52_10j',
'micMur1' => 'microcebus_murinus_core_52_1b',
'monDom5' => 'monodelphis_domestica_core_52_5g',
'mm9' => 'mus_musculus_core_52_37e',
'myoLuc1' => 'myotis_lucifugus_core_52_1g',
'ochPri2' => 'ochotona_princeps_core_52_1c',
'ornAna1' => 'ornithorhynchus_anatinus_core_52_1i',
'oryCun1' => 'oryctolagus_cuniculus_core_52_1h',
'oryLat2' => 'oryzias_latipes_core_52_1h',
'otoGar1' => 'otolemur_garnettii_core_52_1e',
'panTro2' => 'pan_troglodytes_core_52_21j',
'ponAbe2' => 'pongo_pygmaeus_core_52_1c',
'proCap1' => 'procavia_capensis_core_52_1a',
'pteVam1' => 'pteropus_vampyrus_core_52_1a',
'rn4' => 'rattus_norvegicus_core_52_34u',
'sacCer2' => 'saccharomyces_cerevisiae_core_52_1i',
'sorAra1' => 'sorex_araneus_core_52_1e',
'speTri1' => 'spermophilus_tridecemlineatus_core_52_1g',
'fr2' => 'takifugu_rubripes_core_52_4k',
'tarSyr1' => 'tarsius_syrichta_core_52_1a',
'tetNig2' => 'tetraodon_nigroviridis_core_52_8b',
'tupBel1' => 'tupaia_belangeri_core_52_1f',
'turTru1' => 'tursiops_truncatus_core_52_1a',
'vicPac1' => 'vicugna_pacos_core_52_1a',
'xenTro2' => 'xenopus_tropicalis_core_52_41l',
);

# key is UCSC db name, result is FTP file name under the gtf directory
my %ensGeneGtfFileNames_54 = (
'hg18' => 'homo_sapiens/Homo_sapiens.NCBI36.54.gtf.gz',
);

# key is UCSC db name, result is FTP file name under the fasta directory
my %ensGeneFtpPeptideFileNames_54 = (
'hg18' => 'homo_sapiens/pep/Homo_sapiens.NCBI36.54.pep.all.fa.gz',
);

#	directory name under release-53/mysql/ to find 'seq_region' and
#	'assembly' table copies for GeneScaffold coordinate conversions
my %ensGeneFtpMySqlFileNames_54 = (
'hg18' => 'homo_sapiens_core_54_36p',
);

# key is UCSC db name, result is FTP file name under the gtf directory
my %ensGeneGtfFileNames_55 = (
'aedAeg0' => 'aedes_aegypti/Aedes_aegypti.AaegL1.55.gtf.gz',
'anoCar1' => 'anolis_carolinensis/Anolis_carolinensis.AnoCar1.0.55.gtf.gz',
'anoGam2' => 'anopheles_gambiae/Anopheles_gambiae.AgamP3.55.gtf.gz',
'bosTau4' => 'bos_taurus/Bos_taurus.Btau_4.0.55.gtf.gz',
'ce7' => 'caenorhabditis_elegans/Caenorhabditis_elegans.WS200.55.gtf.gz',
'canFam2' => 'canis_familiaris/Canis_familiaris.BROADD2.55.gtf.gz',
'cavPor3' => 'cavia_porcellus/Cavia_porcellus.cavPor3.55.gtf.gz',
'choHof1' => 'choloepus_hoffmanni/Choloepus_hoffmanni.choHof1.55.gtf.gz',
'ci2' => 'ciona_intestinalis/Ciona_intestinalis.JGI2.55.gtf.gz',
'cioSav2' => 'ciona_savignyi/Ciona_savignyi.CSAV2.0.55.gtf.gz',
'danRer6' => 'danio_rerio/Danio_rerio.Zv8.55.gtf.gz',
'dasNov2' => 'dasypus_novemcinctus/Dasypus_novemcinctus.dasNov2.55.gtf.gz',
'dipOrd1' => 'dipodomys_ordii/Dipodomys_ordii.dipOrd1.55.gtf.gz',
'dm5' => 'drosophila_melanogaster/Drosophila_melanogaster.BDGP5.4.55.gtf.gz',
'echTel1' => 'echinops_telfairi/Echinops_telfairi.TENREC.55.gtf.gz',
'equCab2' => 'equus_caballus/Equus_caballus.EquCab2.55.gtf.gz',
'eriEur1' => 'erinaceus_europaeus/Erinaceus_europaeus.HEDGEHOG.55.gtf.gz',
'felCat3' => 'felis_catus/Felis_catus.CAT.55.gtf.gz',
'galGal3' => 'gallus_gallus/Gallus_gallus.WASHUC2.55.gtf.gz',
'gasAcu1' => 'gasterosteus_aculeatus/Gasterosteus_aculeatus.BROADS1.55.gtf.gz',
'gorGor1' => 'gorilla_gorilla/Gorilla_gorilla.gorGor1.55.gtf.gz',
'hg19' => 'homo_sapiens/Homo_sapiens.GRCh37.55.gtf.gz',
'loxAfr2' => 'loxodonta_africana/Loxodonta_africana.loxAfr2.55.gtf.gz',
'rheMac2' => 'macaca_mulatta/Macaca_mulatta.MMUL_1.55.gtf.gz',
'macEug1' => 'macropus_eugenii/Macropus_eugenii.Meug_1.0.55.gtf.gz',
'micMur1' => 'microcebus_murinus/Microcebus_murinus.micMur1.55.gtf.gz',
'monDom5' => 'monodelphis_domestica/Monodelphis_domestica.BROADO5.55.gtf.gz',
'mm9' => 'mus_musculus/Mus_musculus.NCBIM37.55.gtf.gz',
'myoLuc1' => 'myotis_lucifugus/Myotis_lucifugus.MICROBAT1.55.gtf.gz',
'ochPri2' => 'ochotona_princeps/Ochotona_princeps.pika.55.gtf.gz',
'ornAna1' => 'ornithorhynchus_anatinus/Ornithorhynchus_anatinus.OANA5.55.gtf.gz',
'oryCun1' => 'oryctolagus_cuniculus/Oryctolagus_cuniculus.RABBIT.55.gtf.gz',
'oryLat2' => 'oryzias_latipes/Oryzias_latipes.MEDAKA1.55.gtf.gz',
'otoGar1' => 'otolemur_garnettii/Otolemur_garnettii.BUSHBABY1.55.gtf.gz',
'panTro2' => 'pan_troglodytes/Pan_troglodytes.CHIMP2.1.55.gtf.gz',
'ponAbe2' => 'pongo_pygmaeus/Pongo_pygmaeus.PPYG2.55.gtf.gz',
'proCap1' => 'procavia_capensis/Procavia_capensis.proCap1.55.gtf.gz',
'pteVam1' => 'pteropus_vampyrus/Pteropus_vampyrus.pteVam1.55.gtf.gz',
'rn4' => 'rattus_norvegicus/Rattus_norvegicus.RGSC3.4.55.gtf.gz',
'sacCer2' => 'saccharomyces_cerevisiae/Saccharomyces_cerevisiae.SGD1.01.55.gtf.gz',
'sorAra1' => 'sorex_araneus/Sorex_araneus.COMMON_SHREW1.55.gtf.gz',
'speTri1' => 'spermophilus_tridecemlineatus/Spermophilus_tridecemlineatus.SQUIRREL.55.gtf.gz',
'taeGut1' => 'taeniopygia_guttata/Taeniopygia_guttata.taeGut3.2.4.55.gtf.gz',
'fr2' => 'takifugu_rubripes/Takifugu_rubripes.FUGU4.55.gtf.gz',
'tarSyr1' => 'tarsius_syrichta/Tarsius_syrichta.tarSyr1.55.gtf.gz',
'tetNig2' => 'tetraodon_nigroviridis/Tetraodon_nigroviridis.TETRAODON8.55.gtf.gz',
'tupBel1' => 'tupaia_belangeri/Tupaia_belangeri.TREESHREW.55.gtf.gz',
'turTru1' => 'tursiops_truncatus/Tursiops_truncatus.turTru1.55.gtf.gz',
'vicPac1' => 'vicugna_pacos/Vicugna_pacos.vicPac1.55.gtf.gz',
'xenTro2' => 'xenopus_tropicalis/Xenopus_tropicalis.JGI4.1.55.gtf.gz',
);

# key is UCSC db name, result is FTP file name under the fasta directory
my %ensGeneFtpPeptideFileNames_55 = (
'aedAeg0' => 'aedes_aegypti/pep/Aedes_aegypti.AaegL1.55.pep.all.fa.gz',
'anoCar1' => 'anolis_carolinensis/pep/Anolis_carolinensis.AnoCar1.0.55.pep.all.fa.gz',
'anoGam2' => 'anopheles_gambiae/pep/Anopheles_gambiae.AgamP3.55.pep.all.fa.gz',
'bosTau4' => 'bos_taurus/pep/Bos_taurus.Btau_4.0.55.pep.all.fa.gz',
'ce7' => 'caenorhabditis_elegans/pep/Caenorhabditis_elegans.WS200.55.pep.all.fa.gz',
'canFam2' => 'canis_familiaris/pep/Canis_familiaris.BROADD2.55.pep.all.fa.gz',
'cavPor3' => 'cavia_porcellus/pep/Cavia_porcellus.cavPor3.55.pep.all.fa.gz',
'choHof1' => 'choloepus_hoffmanni/pep/Choloepus_hoffmanni.choHof1.55.pep.all.fa.gz',
'ci2' => 'ciona_intestinalis/pep/Ciona_intestinalis.JGI2.55.pep.all.fa.gz',
'cioSav2' => 'ciona_savignyi/pep/Ciona_savignyi.CSAV2.0.55.pep.all.fa.gz',
'danRer6' => 'danio_rerio/pep/Danio_rerio.Zv8.55.pep.all.fa.gz',
'dasNov2' => 'dasypus_novemcinctus/pep/Dasypus_novemcinctus.dasNov2.55.pep.all.fa.gz',
'dipOrd1' => 'dipodomys_ordii/pep/Dipodomys_ordii.dipOrd1.55.pep.all.fa.gz',
'dm5' => 'drosophila_melanogaster/pep/Drosophila_melanogaster.BDGP5.4.55.pep.all.fa.gz',
'echTel1' => 'echinops_telfairi/pep/Echinops_telfairi.TENREC.55.pep.all.fa.gz',
'equCab2' => 'equus_caballus/pep/Equus_caballus.EquCab2.55.pep.all.fa.gz',
'eriEur1' => 'erinaceus_europaeus/pep/Erinaceus_europaeus.HEDGEHOG.55.pep.all.fa.gz',
'felCat3' => 'felis_catus/pep/Felis_catus.CAT.55.pep.all.fa.gz',
'galGal3' => 'gallus_gallus/pep/Gallus_gallus.WASHUC2.55.pep.all.fa.gz',
'gasAcu1' => 'gasterosteus_aculeatus/pep/Gasterosteus_aculeatus.BROADS1.55.pep.all.fa.gz',
'gorGor1' => 'gorilla_gorilla/pep/Gorilla_gorilla.gorGor1.55.pep.all.fa.gz',
'hg19' => 'homo_sapiens/pep/Homo_sapiens.GRCh37.55.pep.all.fa.gz',
'loxAfr2' => 'loxodonta_africana/pep/Loxodonta_africana.loxAfr2.55.pep.all.fa.gz',
'rheMac2' => 'macaca_mulatta/pep/Macaca_mulatta.MMUL_1.55.pep.all.fa.gz',
'macEug1' => 'macropus_eugenii/pep/Macropus_eugenii.Meug_1.0.55.pep.all.fa.gz',
'micMur1' => 'microcebus_murinus/pep/Microcebus_murinus.micMur1.55.pep.all.fa.gz',
'monDom5' => 'monodelphis_domestica/pep/Monodelphis_domestica.BROADO5.55.pep.all.fa.gz',
'mm9' => 'mus_musculus/pep/Mus_musculus.NCBIM37.55.pep.all.fa.gz',
'myoLuc1' => 'myotis_lucifugus/pep/Myotis_lucifugus.MICROBAT1.55.pep.all.fa.gz',
'ochPri2' => 'ochotona_princeps/pep/Ochotona_princeps.pika.55.pep.all.fa.gz',
'ornAna1' => 'ornithorhynchus_anatinus/pep/Ornithorhynchus_anatinus.OANA5.55.pep.all.fa.gz',
'oryCun1' => 'oryctolagus_cuniculus/pep/Oryctolagus_cuniculus.RABBIT.55.pep.all.fa.gz',
'oryLat2' => 'oryzias_latipes/pep/Oryzias_latipes.MEDAKA1.55.pep.all.fa.gz',
'otoGar1' => 'otolemur_garnettii/pep/Otolemur_garnettii.BUSHBABY1.55.pep.all.fa.gz',
'panTro2' => 'pan_troglodytes/pep/Pan_troglodytes.CHIMP2.1.55.pep.all.fa.gz',
'ponAbe2' => 'pongo_pygmaeus/pep/Pongo_pygmaeus.PPYG2.55.pep.all.fa.gz',
'proCap1' => 'procavia_capensis/pep/Procavia_capensis.proCap1.55.pep.all.fa.gz',
'pteVam1' => 'pteropus_vampyrus/pep/Pteropus_vampyrus.pteVam1.55.pep.all.fa.gz',
'rn4' => 'rattus_norvegicus/pep/Rattus_norvegicus.RGSC3.4.55.pep.all.fa.gz',
'sacCer2' => 'saccharomyces_cerevisiae/pep/Saccharomyces_cerevisiae.SGD1.01.55.pep.all.fa.gz',
'sorAra1' => 'sorex_araneus/pep/Sorex_araneus.COMMON_SHREW1.55.pep.all.fa.gz',
'speTri1' => 'spermophilus_tridecemlineatus/pep/Spermophilus_tridecemlineatus.SQUIRREL.55.pep.all.fa.gz',
'taeGut1' => 'taeniopygia_guttata/pep/Taeniopygia_guttata.taeGut3.2.4.55.pep.all.fa.gz',
'fr2' => 'takifugu_rubripes/pep/Takifugu_rubripes.FUGU4.55.pep.all.fa.gz',
'tarSyr1' => 'tarsius_syrichta/pep/Tarsius_syrichta.tarSyr1.55.pep.all.fa.gz',
'tetNig2' => 'tetraodon_nigroviridis/pep/Tetraodon_nigroviridis.TETRAODON8.55.pep.all.fa.gz',
'tupBel1' => 'tupaia_belangeri/pep/Tupaia_belangeri.TREESHREW.55.pep.all.fa.gz',
'turTru1' => 'tursiops_truncatus/pep/Tursiops_truncatus.turTru1.55.pep.all.fa.gz',
'vicPac1' => 'vicugna_pacos/pep/Vicugna_pacos.vicPac1.55.pep.all.fa.gz',
'xenTro2' => 'xenopus_tropicalis/pep/Xenopus_tropicalis.JGI4.1.55.pep.all.fa.gz',
);

#	directory name under release-55/mysql/ to find 'seq_region' and
#	'assembly' table copies for GeneScaffold coordinate conversions
my %ensGeneFtpMySqlFileNames_55 = (
'aedAeg0' => 'aedes_aegypti_core_55_1d',
'anoCar1' => 'anolis_carolinensis_core_55_1a',
'anoGam2' => 'anopheles_gambiae_core_55_3k',
'bosTau4' => 'bos_taurus_core_55_4e',
'ce7' => 'caenorhabditis_elegans_core_55_200',
'canFam2' => 'canis_familiaris_core_55_2m',
'cavPor3' => 'cavia_porcellus_core_55_3a',
'choHof1' => 'choloepus_hoffmanni_core_55_1a',
'ci2' => 'ciona_intestinalis_core_55_2m',
'cioSav2' => 'ciona_savignyi_core_55_2h',
'danRer6' => 'danio_rerio_core_55_8a',
'dasNov2' => 'dasypus_novemcinctus_core_55_2a',
'dipOrd1' => 'dipodomys_ordii_core_55_1c',
'dm5' => 'drosophila_melanogaster_core_55_54c',
'echTel1' => 'echinops_telfairi_core_55_1g',
'equCab2' => 'equus_caballus_core_55_2d',
'eriEur1' => 'erinaceus_europaeus_core_55_1e',
'felCat3' => 'felis_catus_core_55_1f',
'galGal3' => 'gallus_gallus_core_55_2m',
'gasAcu1' => 'gasterosteus_aculeatus_core_55_1j',
'gorGor1' => 'gorilla_gorilla_core_55_1',
'hg19' => 'homo_sapiens_core_55_37',
'loxAfr2' => 'loxodonta_africana_core_55_2a',
'rheMac2' => 'macaca_mulatta_core_55_10l',
'macEug1' => 'macropus_eugenii_core_55_1',
'micMur1' => 'microcebus_murinus_core_55_1b',
'monDom5' => 'monodelphis_domestica_core_55_5i',
'mm9' => 'mus_musculus_core_55_37h',
'myoLuc1' => 'myotis_lucifugus_core_55_1g',
'ochPri2' => 'ochotona_princeps_core_55_1c',
'ornAna1' => 'ornithorhynchus_anatinus_core_55_1k',
'oryCun1' => 'oryctolagus_cuniculus_core_55_1h',
'oryLat2' => 'oryzias_latipes_core_55_1i',
'otoGar1' => 'otolemur_garnettii_core_55_1e',
'panTro2' => 'pan_troglodytes_core_55_21l',
'ponAbe2' => 'pongo_pygmaeus_core_55_1c',
'proCap1' => 'procavia_capensis_core_55_1c',
'pteVam1' => 'pteropus_vampyrus_core_55_1c',
'rn4' => 'rattus_norvegicus_core_55_34w',
'sacCer2' => 'saccharomyces_cerevisiae_core_55_1j',
'sorAra1' => 'sorex_araneus_core_55_1e',
'speTri1' => 'spermophilus_tridecemlineatus_core_55_1g',
'taeGut1' => 'taeniopygia_guttata_core_55_1b',
'fr2' => 'takifugu_rubripes_core_55_4k',
'tarSyr1' => 'tarsius_syrichta_core_55_1c',
'tetNig2' => 'tetraodon_nigroviridis_core_55_8b',
'tupBel1' => 'tupaia_belangeri_core_55_1f',
'turTru1' => 'tursiops_truncatus_core_55_1c',
'vicPac1' => 'vicugna_pacos_core_55_1c',
'xenTro2' => 'xenopus_tropicalis_core_55_41n',
);

# key is UCSC db name, result is FTP file name under the gtf directory
my %ensGeneGtfFileNames_56 = (
'anoCar1' => 'anolis_carolinensis/Anolis_carolinensis.AnoCar1.0.56.gtf.gz',
'bosTau4' => 'bos_taurus/Bos_taurus.Btau_4.0.56.gtf.gz',
'ce7' => 'caenorhabditis_elegans/Caenorhabditis_elegans.WS200.56.gtf.gz',
'calJac2' => 'callithrix_jacchus/Callithrix_jacchus.calJac3.56.gtf.gz' ,
'canFam2' => 'canis_familiaris/Canis_familiaris.BROADD2.56.gtf.gz',
'cavPor3' => 'cavia_porcellus/Cavia_porcellus.cavPor3.56.gtf.gz',
'choHof1' => 'choloepus_hoffmanni/Choloepus_hoffmanni.choHof1.56.gtf.gz',
'ci2' => 'ciona_intestinalis/Ciona_intestinalis.JGI2.56.gtf.gz',
'cioSav2' => 'ciona_savignyi/Ciona_savignyi.CSAV2.0.56.gtf.gz',
'danRer6' => 'danio_rerio/Danio_rerio.Zv8.56.gtf.gz',
'dasNov2' => 'dasypus_novemcinctus/Dasypus_novemcinctus.dasNov2.56.gtf.gz',
'dipOrd1' => 'dipodomys_ordii/Dipodomys_ordii.dipOrd1.56.gtf.gz',
'dm5' => 'drosophila_melanogaster/Drosophila_melanogaster.BDGP5.13.56.gtf.gz',
'echTel1' => 'echinops_telfairi/Echinops_telfairi.TENREC.56.gtf.gz',
'equCab2' => 'equus_caballus/Equus_caballus.EquCab2.56.gtf.gz',
'eriEur1' => 'erinaceus_europaeus/Erinaceus_europaeus.HEDGEHOG.56.gtf.gz',
'felCat3' => 'felis_catus/Felis_catus.CAT.56.gtf.gz',
'galGal3' => 'gallus_gallus/Gallus_gallus.WASHUC2.56.gtf.gz',
'gasAcu1' => 'gasterosteus_aculeatus/Gasterosteus_aculeatus.BROADS1.56.gtf.gz',
'gorGor1' => 'gorilla_gorilla/Gorilla_gorilla.gorGor1.56.gtf.gz',
'hg19' => 'homo_sapiens/Homo_sapiens.GRCh37.56.gtf.gz',
'loxAfr2' => 'loxodonta_africana/Loxodonta_africana.loxAfr2.56.gtf.gz',
'rheMac2' => 'macaca_mulatta/Macaca_mulatta.MMUL_1.56.gtf.gz',
'macEug1' => 'macropus_eugenii/Macropus_eugenii.Meug_1.0.56.gtf.gz',
'micMur1' => 'microcebus_murinus/Microcebus_murinus.micMur1.56.gtf.gz',
'monDom5' => 'monodelphis_domestica/Monodelphis_domestica.BROADO5.56.gtf.gz',
'mm9' => 'mus_musculus/Mus_musculus.NCBIM37.56.gtf.gz',
'myoLuc1' => 'myotis_lucifugus/Myotis_lucifugus.MICROBAT1.56.gtf.gz',
'ochPri2' => 'ochotona_princeps/Ochotona_princeps.pika.56.gtf.gz',
'ornAna1' => 'ornithorhynchus_anatinus/Ornithorhynchus_anatinus.OANA5.56.gtf.gz',
'oryCun1' => 'oryctolagus_cuniculus/Oryctolagus_cuniculus.RABBIT.56.gtf.gz',
'oryLat2' => 'oryzias_latipes/Oryzias_latipes.MEDAKA1.56.gtf.gz',
'otoGar1' => 'otolemur_garnettii/Otolemur_garnettii.BUSHBABY1.56.gtf.gz',
'panTro2' => 'pan_troglodytes/Pan_troglodytes.CHIMP2.1.56.gtf.gz',
'ponAbe2' => 'pongo_pygmaeus/Pongo_pygmaeus.PPYG2.56.gtf.gz',
'proCap1' => 'procavia_capensis/Procavia_capensis.proCap1.56.gtf.gz',
'pteVam1' => 'pteropus_vampyrus/Pteropus_vampyrus.pteVam1.56.gtf.gz',
'rn4' => 'rattus_norvegicus/Rattus_norvegicus.RGSC3.4.56.gtf.gz',
'sacCer2' => 'saccharomyces_cerevisiae/Saccharomyces_cerevisiae.SGD1.01.56.gtf.gz',
'sorAra1' => 'sorex_araneus/Sorex_araneus.COMMON_SHREW1.56.gtf.gz',
'speTri1' => 'spermophilus_tridecemlineatus/Spermophilus_tridecemlineatus.SQUIRREL.56.gtf.gz',
'susScr1' => 'sus_scrofa/Sus_scrofa.Sscrofa9.56.gtf.gz',
'taeGut1' => 'taeniopygia_guttata/Taeniopygia_guttata.taeGut3.2.4.56.gtf.gz',
'fr2' => 'takifugu_rubripes/Takifugu_rubripes.FUGU4.56.gtf.gz',
'tarSyr1' => 'tarsius_syrichta/Tarsius_syrichta.tarSyr1.56.gtf.gz',
'tetNig2' => 'tetraodon_nigroviridis/Tetraodon_nigroviridis.TETRAODON8.56.gtf.gz',
'tupBel1' => 'tupaia_belangeri/Tupaia_belangeri.TREESHREW.56.gtf.gz',
'turTru1' => 'tursiops_truncatus/Tursiops_truncatus.turTru1.56.gtf.gz',
'vicPac1' => 'vicugna_pacos/Vicugna_pacos.vicPac1.56.gtf.gz',
'xenTro2' => 'xenopus_tropicalis/Xenopus_tropicalis.JGI4.1.56.gtf.gz',
);

# key is UCSC db name, result is FTP file name under the fasta directory
my %ensGeneFtpPeptideFileNames_56 = (
'anoCar1' => 'anolis_carolinensis/pep/Anolis_carolinensis.AnoCar1.0.56.pep.all.fa.gz',
'bosTau4' => 'bos_taurus/pep/Bos_taurus.Btau_4.0.56.pep.all.fa.gz',
'ce7' => 'caenorhabditis_elegans/pep/Caenorhabditis_elegans.WS200.56.pep.all.fa.gz',
'calJac2' => 'callithrix_jacchus/pep/Callithrix_jacchus.calJac3.56.pep.all.fa.gz',
'canFam2' => 'canis_familiaris/pep/Canis_familiaris.BROADD2.56.pep.all.fa.gz',
'cavPor3' => 'cavia_porcellus/pep/Cavia_porcellus.cavPor3.56.pep.all.fa.gz',
'choHof1' => 'choloepus_hoffmanni/pep/Choloepus_hoffmanni.choHof1.56.pep.all.fa.gz',
'ci2' => 'ciona_intestinalis/pep/Ciona_intestinalis.JGI2.56.pep.all.fa.gz',
'cioSav2' => 'ciona_savignyi/pep/Ciona_savignyi.CSAV2.0.56.pep.all.fa.gz',
'danRer6' => 'danio_rerio/pep/Danio_rerio.Zv8.56.pep.all.fa.gz',
'dasNov2' => 'dasypus_novemcinctus/pep/Dasypus_novemcinctus.dasNov2.56.pep.all.fa.gz',
'dipOrd1' => 'dipodomys_ordii/pep/Dipodomys_ordii.dipOrd1.56.pep.all.fa.gz',
'dm5' => 'drosophila_melanogaster/pep/Drosophila_melanogaster.BDGP5.13.56.pep.all.fa.gz',
'echTel1' => 'echinops_telfairi/pep/Echinops_telfairi.TENREC.56.pep.all.fa.gz',
'equCab2' => 'equus_caballus/pep/Equus_caballus.EquCab2.56.pep.all.fa.gz',
'eriEur1' => 'erinaceus_europaeus/pep/Erinaceus_europaeus.HEDGEHOG.56.pep.all.fa.gz',
'felCat3' => 'felis_catus/pep/Felis_catus.CAT.56.pep.all.fa.gz',
'galGal3' => 'gallus_gallus/pep/Gallus_gallus.WASHUC2.56.pep.all.fa.gz',
'gasAcu1' => 'gasterosteus_aculeatus/pep/Gasterosteus_aculeatus.BROADS1.56.pep.all.fa.gz',
'gorGor1' => 'gorilla_gorilla/pep/Gorilla_gorilla.gorGor1.56.pep.all.fa.gz',
'hg19' => 'homo_sapiens/pep/Homo_sapiens.GRCh37.56.pep.all.fa.gz',
'loxAfr2' => 'loxodonta_africana/pep/Loxodonta_africana.loxAfr2.56.pep.all.fa.gz',
'rheMac2' => 'macaca_mulatta/pep/Macaca_mulatta.MMUL_1.56.pep.all.fa.gz',
'macEug1' => 'macropus_eugenii/pep/Macropus_eugenii.Meug_1.0.56.pep.all.fa.gz',
'micMur1' => 'microcebus_murinus/pep/Microcebus_murinus.micMur1.56.pep.all.fa.gz',
'monDom5' => 'monodelphis_domestica/pep/Monodelphis_domestica.BROADO5.56.pep.all.fa.gz',
'mm9' => 'mus_musculus/pep/Mus_musculus.NCBIM37.56.pep.all.fa.gz',
'myoLuc1' => 'myotis_lucifugus/pep/Myotis_lucifugus.MICROBAT1.56.pep.all.fa.gz',
'ochPri2' => 'ochotona_princeps/pep/Ochotona_princeps.pika.56.pep.all.fa.gz',
'ornAna1' => 'ornithorhynchus_anatinus/pep/Ornithorhynchus_anatinus.OANA5.56.pep.all.fa.gz',
'oryCun1' => 'oryctolagus_cuniculus/pep/Oryctolagus_cuniculus.RABBIT.56.pep.all.fa.gz',
'oryLat2' => 'oryzias_latipes/pep/Oryzias_latipes.MEDAKA1.56.pep.all.fa.gz',
'otoGar1' => 'otolemur_garnettii/pep/Otolemur_garnettii.BUSHBABY1.56.pep.all.fa.gz',
'panTro2' => 'pan_troglodytes/pep/Pan_troglodytes.CHIMP2.1.56.pep.all.fa.gz',
'ponAbe2' => 'pongo_pygmaeus/pep/Pongo_pygmaeus.PPYG2.56.pep.all.fa.gz',
'proCap1' => 'procavia_capensis/pep/Procavia_capensis.proCap1.56.pep.all.fa.gz',
'pteVam1' => 'pteropus_vampyrus/pep/Pteropus_vampyrus.pteVam1.56.pep.all.fa.gz',
'rn4' => 'rattus_norvegicus/pep/Rattus_norvegicus.RGSC3.4.56.pep.all.fa.gz',
'sacCer2' => 'saccharomyces_cerevisiae/pep/Saccharomyces_cerevisiae.SGD1.01.56.pep.all.fa.gz',
'sorAra1' => 'sorex_araneus/pep/Sorex_araneus.COMMON_SHREW1.56.pep.all.fa.gz',
'speTri1' => 'spermophilus_tridecemlineatus/pep/Spermophilus_tridecemlineatus.SQUIRREL.56.pep.all.fa.gz',
'susScr1' => 'sus_scrofa/pep/Sus_scrofa.Sscrofa9.56.pep.all.fa.gz',
'taeGut1' => 'taeniopygia_guttata/pep/Taeniopygia_guttata.taeGut3.2.4.56.pep.all.fa.gz',
'fr2' => 'takifugu_rubripes/pep/Takifugu_rubripes.FUGU4.56.pep.all.fa.gz',
'tarSyr1' => 'tarsius_syrichta/pep/Tarsius_syrichta.tarSyr1.56.pep.all.fa.gz',
'tetNig2' => 'tetraodon_nigroviridis/pep/Tetraodon_nigroviridis.TETRAODON8.56.pep.all.fa.gz',
'tupBel1' => 'tupaia_belangeri/pep/Tupaia_belangeri.TREESHREW.56.pep.all.fa.gz',
'turTru1' => 'tursiops_truncatus/pep/Tursiops_truncatus.turTru1.56.pep.all.fa.gz',
'vicPac1' => 'vicugna_pacos/pep/Vicugna_pacos.vicPac1.56.pep.all.fa.gz',
'xenTro2' => 'xenopus_tropicalis/pep/Xenopus_tropicalis.JGI4.1.56.pep.all.fa.gz',
);

#	directory name under release-56/mysql/ to find 'seq_region' and
#	'assembly' table copies for GeneScaffold coordinate conversions
my %ensGeneFtpMySqlFileNames_56 = (
'anoCar1' =>  'anolis_carolinensis_core_56_1a' ,
'bosTau4' => 'bos_taurus_core_56_4e' ,
'calJac2' => 'callithrix_jacchus_core_56_3' ,
'canFam2' => 'canis_familiaris_core_56_2m' ,
'cavPor3' => 'cavia_porcellus_core_56_3a',
'ce7' => 'caenorhabditis_elegans_core_56_200' ,
'choHof1' => 'choloepus_hoffmanni_core_56_1a',
'ci2' => 'ciona_intestinalis_core_56_2m',
'cioSav2' => 'ciona_savignyi_core_56_2h',
'danRer6' => 'danio_rerio_core_56_8b',
'dasNov2' => 'dasypus_novemcinctus_core_56_2a',
'dipOrd1' => 'dipodomys_ordii_core_56_1c',
'dm5' => 'drosophila_melanogaster_core_56_513a' ,
'echTel1' => 'echinops_telfairi_core_56_1g',
'equCab2' => 'equus_caballus_core_56_2d',
'eriEur1' => 'erinaceus_europaeus_core_56_1e',
'felCat3' => 'felis_catus_core_56_1f',
'galGal3' => 'gallus_gallus_core_56_2m',
'gasAcu1' => 'gasterosteus_aculeatus_core_56_1j',
'gorGor1' => 'gorilla_gorilla_core_56_1',
'hg19' => 'homo_sapiens_core_56_37a',
'loxAfr2' => 'loxodonta_africana_core_56_2a',
'rheMac2' => 'macaca_mulatta_core_56_10l',
'macEug1' => 'macropus_eugenii_core_56_1',
'micMur1' => 'microcebus_murinus_core_56_1b',
'monDom5' => 'monodelphis_domestica_core_56_5i',
'mm9' => 'mus_musculus_core_56_37i',
'myoLuc1' => 'myotis_lucifugus_core_56_1g',
'ochPri2' => 'ochotona_princeps_core_56_1c',
'ornAna1' => 'ornithorhynchus_anatinus_core_56_1k',
'oryCun1' => 'oryctolagus_cuniculus_core_56_1h',
'oryLat2' => 'oryzias_latipes_core_56_1i',
'otoGar1' => 'otolemur_garnettii_core_56_1e',
'panTro2' => 'pan_troglodytes_core_56_21l',
'ponAbe2' => 'pongo_pygmaeus_core_56_1c',
'proCap1' => 'procavia_capensis_core_56_1c',
'pteVam1' => 'pteropus_vampyrus_core_56_1c',
'rn4' => 'rattus_norvegicus_core_56_34x',
'sacCer2' => 'saccharomyces_cerevisiae_core_56_1j',
'sorAra1' => 'sorex_araneus_core_56_1e',
'speTri1' => 'spermophilus_tridecemlineatus_core_56_1g',
'susScr1' => 'sus_scrofa_core_56_9' ,
'taeGut1' => 'taeniopygia_guttata_core_56_1c',
'fr2' => 'takifugu_rubripes_core_56_4k',
'tarSyr1' => 'tarsius_syrichta_core_56_1c',
'tetNig2' => 'tetraodon_nigroviridis_core_56_8b',
'tupBel1' => 'tupaia_belangeri_core_56_1f',
'turTru1' => 'tursiops_truncatus_core_56_1c',
'vicPac1' => 'vicugna_pacos_core_56_1c',
'xenTro2' => 'xenopus_tropicalis_core_56_41n',
);

# key is UCSC db name, result is FTP file name under the gtf directory
my %ensGeneGtfFileNames_57 = (
'anoCar1' => 'anolis_carolinensis/Anolis_carolinensis.AnoCar1.0.57.gtf.gz',
'bosTau4' => 'bos_taurus/Bos_taurus.Btau_4.0.57.gtf.gz',
'ce7' => 'caenorhabditis_elegans/Caenorhabditis_elegans.WS200.57.gtf.gz',
'calJac2' => 'callithrix_jacchus/Callithrix_jacchus.calJac3.57.gtf.gz',
'canFam2' => 'canis_familiaris/Canis_familiaris.BROADD2.57.gtf.gz',
'cavPor3' => 'cavia_porcellus/Cavia_porcellus.cavPor3.57.gtf.gz',
'choHof1' => 'choloepus_hoffmanni/Choloepus_hoffmanni.choHof1.57.gtf.gz',
'ci2' => 'ciona_intestinalis/Ciona_intestinalis.JGI2.57.gtf.gz',
'cioSav2' => 'ciona_savignyi/Ciona_savignyi.CSAV2.0.57.gtf.gz',
'danRer6' => 'danio_rerio/Danio_rerio.Zv8.57.gtf.gz',
'dasNov2' => 'dasypus_novemcinctus/Dasypus_novemcinctus.dasNov2.57.gtf.gz',
'dipOrd1' => 'dipodomys_ordii/Dipodomys_ordii.dipOrd1.57.gtf.gz',
'dm5' => 'drosophila_melanogaster/Drosophila_melanogaster.BDGP5.13.57.gtf.gz',
'echTel1' => 'echinops_telfairi/Echinops_telfairi.TENREC.57.gtf.gz',
'equCab2' => 'equus_caballus/Equus_caballus.EquCab2.57.gtf.gz',
'eriEur1' => 'erinaceus_europaeus/Erinaceus_europaeus.HEDGEHOG.57.gtf.gz',
'felCat3' => 'felis_catus/Felis_catus.CAT.57.gtf.gz',
'galGal3' => 'gallus_gallus/Gallus_gallus.WASHUC2.57.gtf.gz',
'gasAcu1' => 'gasterosteus_aculeatus/Gasterosteus_aculeatus.BROADS1.57.gtf.gz',
'gorGor3' => 'gorilla_gorilla/Gorilla_gorilla.gorGor3.57.gtf.gz',
'hg19' => 'homo_sapiens/Homo_sapiens.GRCh37.57.gtf.gz',
'loxAfr3' => 'loxodonta_africana/Loxodonta_africana.loxAfr3.57.gtf.gz',
'rheMac2' => 'macaca_mulatta/Macaca_mulatta.MMUL_1.57.gtf.gz',
'macEug1' => 'macropus_eugenii/Macropus_eugenii.Meug_1.0.57.gtf.gz',
'melGal1' => 'meleagris_gallopavo/Meleagris_gallopavo.UMD2.57.gtf.gz',
'micMur1' => 'microcebus_murinus/Microcebus_murinus.micMur1.57.gtf.gz',
'monDom5' => 'monodelphis_domestica/Monodelphis_domestica.BROADO5.57.gtf.gz',
'mm9' => 'mus_musculus/Mus_musculus.NCBIM37.57.gtf.gz',
'myoLuc1' => 'myotis_lucifugus/Myotis_lucifugus.MICROBAT1.57.gtf.gz',
'ochPri2' => 'ochotona_princeps/Ochotona_princeps.pika.57.gtf.gz',
'ornAna1' => 'ornithorhynchus_anatinus/Ornithorhynchus_anatinus.OANA5.57.gtf.gz',
'oryCun2' => 'oryctolagus_cuniculus/Oryctolagus_cuniculus.oryCun2.57.gtf.gz',
'oryLat2' => 'oryzias_latipes/Oryzias_latipes.MEDAKA1.57.gtf.gz',
'otoGar1' => 'otolemur_garnettii/Otolemur_garnettii.BUSHBABY1.57.gtf.gz',
'panTro2' => 'pan_troglodytes/Pan_troglodytes.CHIMP2.1.57.gtf.gz',
'ponAbe2' => 'pongo_pygmaeus/Pongo_pygmaeus.PPYG2.57.gtf.gz',
'proCap1' => 'procavia_capensis/Procavia_capensis.proCap1.57.gtf.gz',
'pteVam1' => 'pteropus_vampyrus/Pteropus_vampyrus.pteVam1.57.gtf.gz',
'rn4' => 'rattus_norvegicus/Rattus_norvegicus.RGSC3.4.57.gtf.gz',
'sacCer2' => 'saccharomyces_cerevisiae/Saccharomyces_cerevisiae.SGD1.01.57.gtf.gz',
'sorAra1' => 'sorex_araneus/Sorex_araneus.COMMON_SHREW1.57.gtf.gz',
'speTri1' => 'spermophilus_tridecemlineatus/Spermophilus_tridecemlineatus.SQUIRREL.57.gtf.gz',
'susScr1' => 'sus_scrofa/Sus_scrofa.Sscrofa9.57.gtf.gz',
'taeGut1' => 'taeniopygia_guttata/Taeniopygia_guttata.taeGut3.2.4.57.gtf.gz',
'fr2' => 'takifugu_rubripes/Takifugu_rubripes.FUGU4.57.gtf.gz',
'tarSyr1' => 'tarsius_syrichta/Tarsius_syrichta.tarSyr1.57.gtf.gz',
'tetNig2' => 'tetraodon_nigroviridis/Tetraodon_nigroviridis.TETRAODON8.57.gtf.gz',
'tupBel1' => 'tupaia_belangeri/Tupaia_belangeri.TREESHREW.57.gtf.gz',
'turTru1' => 'tursiops_truncatus/Tursiops_truncatus.turTru1.57.gtf.gz',
'vicPac1' => 'vicugna_pacos/Vicugna_pacos.vicPac1.57.gtf.gz',
'xenTro2' => 'xenopus_tropicalis/Xenopus_tropicalis.JGI4.1.57.gtf.gz',
);

# key is UCSC db name, result is FTP file name under the fasta directory
my %ensGeneFtpPeptideFileNames_57 = (
'anoCar1' => 'anolis_carolinensis/pep/Anolis_carolinensis.AnoCar1.0.57.pep.all.fa.gz',
'bosTau4' => 'bos_taurus/pep/Bos_taurus.Btau_4.0.57.pep.all.fa.gz',
'ce7' => 'caenorhabditis_elegans/pep/Caenorhabditis_elegans.WS200.57.pep.all.fa.gz',
'calJac2' => 'callithrix_jacchus/pep/Callithrix_jacchus.calJac3.57.pep.all.fa.gz',
'canFam2' => 'canis_familiaris/pep/Canis_familiaris.BROADD2.57.pep.all.fa.gz',
'cavPor3' => 'cavia_porcellus/pep/Cavia_porcellus.cavPor3.57.pep.all.fa.gz',
'choHof1' => 'choloepus_hoffmanni/pep/Choloepus_hoffmanni.choHof1.57.pep.all.fa.gz',
'ci2' => 'ciona_intestinalis/pep/Ciona_intestinalis.JGI2.57.pep.all.fa.gz',
'cioSav2' => 'ciona_savignyi/pep/Ciona_savignyi.CSAV2.0.57.pep.all.fa.gz',
'danRer6' => 'danio_rerio/pep/Danio_rerio.Zv8.57.pep.all.fa.gz',
'dasNov2' => 'dasypus_novemcinctus/pep/Dasypus_novemcinctus.dasNov2.57.pep.all.fa.gz',
'dipOrd1' => 'dipodomys_ordii/pep/Dipodomys_ordii.dipOrd1.57.pep.all.fa.gz',
'dm5' => 'drosophila_melanogaster/pep/Drosophila_melanogaster.BDGP5.13.57.pep.all.fa.gz',
'echTel1' => 'echinops_telfairi/pep/Echinops_telfairi.TENREC.57.pep.all.fa.gz',
'equCab2' => 'equus_caballus/pep/Equus_caballus.EquCab2.57.pep.all.fa.gz',
'eriEur1' => 'erinaceus_europaeus/pep/Erinaceus_europaeus.HEDGEHOG.57.pep.all.fa.gz',
'felCat3' => 'felis_catus/pep/Felis_catus.CAT.57.pep.all.fa.gz',
'galGal3' => 'gallus_gallus/pep/Gallus_gallus.WASHUC2.57.pep.all.fa.gz',
'gasAcu1' => 'gasterosteus_aculeatus/pep/Gasterosteus_aculeatus.BROADS1.57.pep.all.fa.gz',
'gorGor3' => 'gorilla_gorilla/pep/Gorilla_gorilla.gorGor3.57.pep.all.fa.gz',
'hg19' => 'homo_sapiens/pep/Homo_sapiens.GRCh37.57.pep.all.fa.gz',
'loxAfr3' => 'loxodonta_africana/pep/Loxodonta_africana.loxAfr3.57.pep.all.fa.gz',
'rheMac2' => 'macaca_mulatta/pep/Macaca_mulatta.MMUL_1.57.pep.all.fa.gz',
'macEug1' => 'macropus_eugenii/pep/Macropus_eugenii.Meug_1.0.57.pep.all.fa.gz',
'micMur1' => 'microcebus_murinus/pep/Microcebus_murinus.micMur1.57.pep.all.fa.gz',
'melGal1' => 'meleagris_gallopavo/pep/Meleagris_gallopavo.UMD2.57.pep.all.fa.gz ,',
'monDom5' => 'monodelphis_domestica/pep/Monodelphis_domestica.BROADO5.57.pep.all.fa.gz',
'mm9' => 'mus_musculus/pep/Mus_musculus.NCBIM37.57.pep.all.fa.gz',
'myoLuc1' => 'myotis_lucifugus/pep/Myotis_lucifugus.MICROBAT1.57.pep.all.fa.gz',
'ochPri2' => 'ochotona_princeps/pep/Ochotona_princeps.pika.57.pep.all.fa.gz',
'ornAna1' => 'ornithorhynchus_anatinus/pep/Ornithorhynchus_anatinus.OANA5.57.pep.all.fa.gz',
'oryCun2' => 'oryctolagus_cuniculus/pep/Oryctolagus_cuniculus.oryCun2.57.pep.all.fa.gz',
'oryLat2' => 'oryzias_latipes/pep/Oryzias_latipes.MEDAKA1.57.pep.all.fa.gz',
'otoGar1' => 'otolemur_garnettii/pep/Otolemur_garnettii.BUSHBABY1.57.pep.all.fa.gz',
'panTro2' => 'pan_troglodytes/pep/Pan_troglodytes.CHIMP2.1.57.pep.all.fa.gz',
'ponAbe2' => 'pongo_pygmaeus/pep/Pongo_pygmaeus.PPYG2.57.pep.all.fa.gz',
'proCap1' => 'procavia_capensis/pep/Procavia_capensis.proCap1.57.pep.all.fa.gz',
'pteVam1' => 'pteropus_vampyrus/pep/Pteropus_vampyrus.pteVam1.57.pep.all.fa.gz',
'rn4' => 'rattus_norvegicus/pep/Rattus_norvegicus.RGSC3.4.57.pep.all.fa.gz',
'sacCer2' => 'saccharomyces_cerevisiae/pep/Saccharomyces_cerevisiae.SGD1.01.57.pep.all.fa.gz',
'sorAra1' => 'sorex_araneus/pep/Sorex_araneus.COMMON_SHREW1.57.pep.all.fa.gz',
'speTri1' => 'spermophilus_tridecemlineatus/pep/Spermophilus_tridecemlineatus.SQUIRREL.57.pep.all.fa.gz',
'susScr1' => 'sus_scrofa/pep/Sus_scrofa.Sscrofa9.57.pep.all.fa.gz',
'taeGut1' => 'taeniopygia_guttata/pep/Taeniopygia_guttata.taeGut3.2.4.57.pep.all.fa.gz',
'fr2' => 'takifugu_rubripes/pep/Takifugu_rubripes.FUGU4.57.pep.all.fa.gz',
'tarSyr1' => 'tarsius_syrichta/pep/Tarsius_syrichta.tarSyr1.57.pep.all.fa.gz',
'tetNig2' => 'tetraodon_nigroviridis/pep/Tetraodon_nigroviridis.TETRAODON8.57.pep.all.fa.gz',
'tupBel1' => 'tupaia_belangeri/pep/Tupaia_belangeri.TREESHREW.57.pep.all.fa.gz',
'turTru1' => 'tursiops_truncatus/pep/Tursiops_truncatus.turTru1.57.pep.all.fa.gz',
'vicPac1' => 'vicugna_pacos/pep/Vicugna_pacos.vicPac1.57.pep.all.fa.gz',
'xenTro2' => 'xenopus_tropicalis/pep/Xenopus_tropicalis.JGI4.1.57.pep.all.fa.gz',
);

#	directory name under release-57/mysql/ to find 'seq_region' and
#	'assembly' table copies for GeneScaffold coordinate conversions
my %ensGeneFtpMySqlFileNames_57 = (
'anoCar1' => 'anolis_carolinensis_core_57_1a' ,
'bosTau4' => 'bos_taurus_core_57_4f' ,
'calJac2' => 'callithrix_jacchus_core_57_3' ,
'canFam2' => 'canis_familiaris_core_57_2m' ,
'cavPor3' => 'cavia_porcellus_core_57_3a',
'ce7' => 'caenorhabditis_elegans_core_57_200a' ,
'choHof1' => 'choloepus_hoffmanni_core_57_1a',
'ci2' => 'ciona_intestinalis_core_57_2m',
'cioSav2' => 'ciona_savignyi_core_57_2h',
'danRer6' => 'danio_rerio_core_57_8c',
'dasNov2' => 'dasypus_novemcinctus_core_57_2a',
'dipOrd1' => 'dipodomys_ordii_core_57_1c',
'dm5' => 'drosophila_melanogaster_core_57_513b' ,
'echTel1' => 'echinops_telfairi_core_57_1g',
'equCab2' => 'equus_caballus_core_57_2d',
'eriEur1' => 'erinaceus_europaeus_core_57_1e',
'felCat3' => 'felis_catus_core_57_1f',
'galGal3' => 'gallus_gallus_core_57_2m',
'gasAcu1' => 'gasterosteus_aculeatus_core_57_1j',
'gorGor3' => 'gorilla_gorilla_core_57_3',
'hg19' => 'homo_sapiens_core_57_37b',
'loxAfr3' => 'loxodonta_africana_core_57_3',
'rheMac2' => 'macaca_mulatta_core_57_10l',
'macEug1' => 'macropus_eugenii_core_57_1',
'micMur1' => 'microcebus_murinus_core_57_1b',
'melGal1' => 'meleagris_gallopavo_core_57_2',
'monDom5' => 'monodelphis_domestica_core_57_5i',
'mm9' => 'mus_musculus_core_57_37j',
'myoLuc1' => 'myotis_lucifugus_core_57_1g',
'ochPri2' => 'ochotona_princeps_core_57_1c',
'ornAna1' => 'ornithorhynchus_anatinus_core_57_1k',
'oryCun2' => 'oryctolagus_cuniculus_core_57_2',
'oryLat2' => 'oryzias_latipes_core_57_1i',
'otoGar1' => 'otolemur_garnettii_core_57_1e',
'panTro2' => 'pan_troglodytes_core_57_21l',
'ponAbe2' => 'pongo_pygmaeus_core_57_1c',
'proCap1' => 'procavia_capensis_core_57_1c',
'pteVam1' => 'pteropus_vampyrus_core_57_1c',
'rn4' => 'rattus_norvegicus_core_57_34y',
'sacCer2' => 'saccharomyces_cerevisiae_core_57_1j',
'sorAra1' => 'sorex_araneus_core_57_1e',
'speTri1' => 'spermophilus_tridecemlineatus_core_57_1g',
'susScr1' => 'sus_scrofa_core_57_9a' ,
'taeGut1' => 'taeniopygia_guttata_core_57_1c',
'fr2' => 'takifugu_rubripes_core_57_4k',
'tarSyr1' => 'tarsius_syrichta_core_57_1c',
'tetNig2' => 'tetraodon_nigroviridis_core_57_8b',
'tupBel1' => 'tupaia_belangeri_core_57_1f',
'turTru1' => 'tursiops_truncatus_core_57_1c',
'vicPac1' => 'vicugna_pacos_core_57_1c',
'xenTro2' => 'xenopus_tropicalis_core_57_41n',
);

# key is UCSC db name, result is FTP file name under the gtf directory
my %ensGeneGtfFileNames_58 = (
'anoCar1' => 'anolis_carolinensis/Anolis_carolinensis.AnoCar1.0.58.gtf.gz',
'bosTau4' => 'bos_taurus/Bos_taurus.Btau_4.0.58.gtf.gz',
'ce9' => 'caenorhabditis_elegans/Caenorhabditis_elegans.WS210.58.gtf.gz',
'calJac3' => 'callithrix_jacchus/Callithrix_jacchus.C_jacchus3.2.1.58.gtf.gz',
'canFam2' => 'canis_familiaris/Canis_familiaris.BROADD2.58.gtf.gz',
'cavPor3' => 'cavia_porcellus/Cavia_porcellus.cavPor3.58.gtf.gz',
'choHof1' => 'choloepus_hoffmanni/Choloepus_hoffmanni.choHof1.58.gtf.gz',
'ci2' => 'ciona_intestinalis/Ciona_intestinalis.JGI2.58.gtf.gz',
'cioSav2' => 'ciona_savignyi/Ciona_savignyi.CSAV2.0.58.gtf.gz',
'danRer6' => 'danio_rerio/Danio_rerio.Zv8.58.gtf.gz',
'dasNov2' => 'dasypus_novemcinctus/Dasypus_novemcinctus.dasNov2.58.gtf.gz',
'dipOrd1' => 'dipodomys_ordii/Dipodomys_ordii.dipOrd1.58.gtf.gz',
'dm3' => 'drosophila_melanogaster/Drosophila_melanogaster.BDGP5.13.58.gtf.gz',
'echTel1' => 'echinops_telfairi/Echinops_telfairi.TENREC.58.gtf.gz',
'equCab2' => 'equus_caballus/Equus_caballus.EquCab2.58.gtf.gz',
'eriEur1' => 'erinaceus_europaeus/Erinaceus_europaeus.HEDGEHOG.58.gtf.gz',
'felCat3' => 'felis_catus/Felis_catus.CAT.58.gtf.gz',
'galGal3' => 'gallus_gallus/Gallus_gallus.WASHUC2.58.gtf.gz',
'gasAcu1' => 'gasterosteus_aculeatus/Gasterosteus_aculeatus.BROADS1.58.gtf.gz',
'gorGor3' => 'gorilla_gorilla/Gorilla_gorilla.gorGor3.58.gtf.gz',
'hg19' => 'homo_sapiens/Homo_sapiens.GRCh37.58.gtf.gz',
'loxAfr3' => 'loxodonta_africana/Loxodonta_africana.loxAfr3.58.gtf.gz',
'rheMac2' => 'macaca_mulatta/Macaca_mulatta.MMUL_1.58.gtf.gz',
'macEug1' => 'macropus_eugenii/Macropus_eugenii.Meug_1.0.58.gtf.gz',
'micMur1' => 'microcebus_murinus/Microcebus_murinus.micMur1.58.gtf.gz',
'monDom5' => 'monodelphis_domestica/Monodelphis_domestica.BROADO5.58.gtf.gz',
'mm9' => 'mus_musculus/Mus_musculus.NCBIM37.58.gtf.gz',
'myoLuc1' => 'myotis_lucifugus/Myotis_lucifugus.MICROBAT1.58.gtf.gz',
'ochPri2' => 'ochotona_princeps/Ochotona_princeps.pika.58.gtf.gz',
'ornAna1' => 'ornithorhynchus_anatinus/Ornithorhynchus_anatinus.OANA5.58.gtf.gz',
'oryCun2' => 'oryctolagus_cuniculus/Oryctolagus_cuniculus.oryCun2.58.gtf.gz',
'oryLat2' => 'oryzias_latipes/Oryzias_latipes.MEDAKA1.58.gtf.gz',
'otoGar1' => 'otolemur_garnettii/Otolemur_garnettii.BUSHBABY1.58.gtf.gz',
'panTro2' => 'pan_troglodytes/Pan_troglodytes.CHIMP2.1.58.gtf.gz',
'ponAbe2' => 'pongo_pygmaeus/Pongo_pygmaeus.PPYG2.58.gtf.gz',
'proCap1' => 'procavia_capensis/Procavia_capensis.proCap1.58.gtf.gz',
'pteVam1' => 'pteropus_vampyrus/Pteropus_vampyrus.pteVam1.58.gtf.gz',
'rn4' => 'rattus_norvegicus/Rattus_norvegicus.RGSC3.4.58.gtf.gz',
'sacCer2' => 'saccharomyces_cerevisiae/Saccharomyces_cerevisiae.SGD1.01.58.gtf.gz',
'sorAra1' => 'sorex_araneus/Sorex_araneus.COMMON_SHREW1.58.gtf.gz',
'speTri1' => 'spermophilus_tridecemlineatus/Spermophilus_tridecemlineatus.SQUIRREL.58.gtf.gz',
'susScr1' => 'sus_scrofa/Sus_scrofa.Sscrofa9.58.gtf.gz',
'taeGut1' => 'taeniopygia_guttata/Taeniopygia_guttata.taeGut3.2.4.58.gtf.gz',
'fr2' => 'takifugu_rubripes/Takifugu_rubripes.FUGU4.58.gtf.gz',
'tarSyr1' => 'tarsius_syrichta/Tarsius_syrichta.tarSyr1.58.gtf.gz',
'tetNig2' => 'tetraodon_nigroviridis/Tetraodon_nigroviridis.TETRAODON8.58.gtf.gz',
'tupBel1' => 'tupaia_belangeri/Tupaia_belangeri.TREESHREW.58.gtf.gz',
'turTru1' => 'tursiops_truncatus/Tursiops_truncatus.turTru1.58.gtf.gz',
'vicPac1' => 'vicugna_pacos/Vicugna_pacos.vicPac1.58.gtf.gz',
'xenTro2' => 'xenopus_tropicalis/Xenopus_tropicalis.JGI4.1.58.gtf.gz',
);

# key is UCSC db name, result is FTP file name under the fasta directory
my %ensGeneFtpPeptideFileNames_58 = (
'anoCar1' => 'anolis_carolinensis/pep/Anolis_carolinensis.AnoCar1.0.58.pep.all.fa.gz',
'bosTau4' => 'bos_taurus/pep/Bos_taurus.Btau_4.0.58.pep.all.fa.gz',
'ce9' => 'caenorhabditis_elegans/pep/Caenorhabditis_elegans.WS210.58.pep.all.fa.gz',
'calJac3' => 'callithrix_jacchus/pep/Callithrix_jacchus.C_jacchus3.2.1.58.pep.all.fa.gz' ,
'canFam2' => 'canis_familiaris/pep/Canis_familiaris.BROADD2.58.pep.all.fa.gz',
'cavPor3' => 'cavia_porcellus/pep/Cavia_porcellus.cavPor3.58.pep.all.fa.gz',
'choHof1' => 'choloepus_hoffmanni/pep/Choloepus_hoffmanni.choHof1.58.pep.all.fa.gz',
'ci2' => 'ciona_intestinalis/pep/Ciona_intestinalis.JGI2.58.pep.all.fa.gz',
'cioSav2' => 'ciona_savignyi/pep/Ciona_savignyi.CSAV2.0.58.pep.all.fa.gz',
'danRer6' => 'danio_rerio/pep/Danio_rerio.Zv8.58.pep.all.fa.gz',
'dasNov2' => 'dasypus_novemcinctus/pep/Dasypus_novemcinctus.dasNov2.58.pep.all.fa.gz',
'dipOrd1' => 'dipodomys_ordii/pep/Dipodomys_ordii.dipOrd1.58.pep.all.fa.gz',
'dm3' => 'drosophila_melanogaster/pep/Drosophila_melanogaster.BDGP5.13.58.pep.all.fa.gz',
'echTel1' => 'echinops_telfairi/pep/Echinops_telfairi.TENREC.58.pep.all.fa.gz',
'equCab2' => 'equus_caballus/pep/Equus_caballus.EquCab2.58.pep.all.fa.gz',
'eriEur1' => 'erinaceus_europaeus/pep/Erinaceus_europaeus.HEDGEHOG.58.pep.all.fa.gz',
'felCat3' => 'felis_catus/pep/Felis_catus.CAT.58.pep.all.fa.gz',
'galGal3' => 'gallus_gallus/pep/Gallus_gallus.WASHUC2.58.pep.all.fa.gz',
'gasAcu1' => 'gasterosteus_aculeatus/pep/Gasterosteus_aculeatus.BROADS1.58.pep.all.fa.gz',
'gorGor3' => 'gorilla_gorilla/pep/Gorilla_gorilla.gorGor3.58.pep.all.fa.gz',
'hg19' => 'homo_sapiens/pep/Homo_sapiens.GRCh37.58.pep.all.fa.gz',
'loxAfr3' => 'loxodonta_africana/pep/Loxodonta_africana.loxAfr3.58.pep.all.fa.gz',
'rheMac2' => 'macaca_mulatta/pep/Macaca_mulatta.MMUL_1.58.pep.all.fa.gz',
'macEug1' => 'macropus_eugenii/pep/Macropus_eugenii.Meug_1.0.58.pep.all.fa.gz',
'micMur1' => 'microcebus_murinus/pep/Microcebus_murinus.micMur1.58.pep.all.fa.gz',
'monDom5' => 'monodelphis_domestica/pep/Monodelphis_domestica.BROADO5.58.pep.all.fa.gz',
'mm9' => 'mus_musculus/pep/Mus_musculus.NCBIM37.58.pep.all.fa.gz',
'myoLuc1' => 'myotis_lucifugus/pep/Myotis_lucifugus.MICROBAT1.58.pep.all.fa.gz',
'ochPri2' => 'ochotona_princeps/pep/Ochotona_princeps.pika.58.pep.all.fa.gz',
'ornAna1' => 'ornithorhynchus_anatinus/pep/Ornithorhynchus_anatinus.OANA5.58.pep.all.fa.gz',
'oryCun2' => 'oryctolagus_cuniculus/pep/Oryctolagus_cuniculus.oryCun2.58.pep.all.fa.gz',
'oryLat2' => 'oryzias_latipes/pep/Oryzias_latipes.MEDAKA1.58.pep.all.fa.gz',
'otoGar1' => 'otolemur_garnettii/pep/Otolemur_garnettii.BUSHBABY1.58.pep.all.fa.gz',
'panTro2' => 'pan_troglodytes/pep/Pan_troglodytes.CHIMP2.1.58.pep.all.fa.gz',
'ponAbe2' => 'pongo_pygmaeus/pep/Pongo_pygmaeus.PPYG2.58.pep.all.fa.gz',
'proCap1' => 'procavia_capensis/pep/Procavia_capensis.proCap1.58.pep.all.fa.gz',
'pteVam1' => 'pteropus_vampyrus/pep/Pteropus_vampyrus.pteVam1.58.pep.all.fa.gz',
'rn4' => 'rattus_norvegicus/pep/Rattus_norvegicus.RGSC3.4.58.pep.all.fa.gz',
'sacCer2' => 'saccharomyces_cerevisiae/pep/Saccharomyces_cerevisiae.SGD1.01.58.pep.all.fa.gz',
'sorAra1' => 'sorex_araneus/pep/Sorex_araneus.COMMON_SHREW1.58.pep.all.fa.gz',
'speTri1' => 'spermophilus_tridecemlineatus/pep/Spermophilus_tridecemlineatus.SQUIRREL.58.pep.all.fa.gz',
'susScr1' => 'sus_scrofa/pep/Sus_scrofa.Sscrofa9.58.pep.all.fa.gz',
'taeGut1' => 'taeniopygia_guttata/pep/Taeniopygia_guttata.taeGut3.2.4.58.pep.all.fa.gz',
'fr2' => 'takifugu_rubripes/pep/Takifugu_rubripes.FUGU4.58.pep.all.fa.gz',
'tarSyr1' => 'tarsius_syrichta/pep/Tarsius_syrichta.tarSyr1.58.pep.all.fa.gz',
'tetNig2' => 'tetraodon_nigroviridis/pep/Tetraodon_nigroviridis.TETRAODON8.58.pep.all.fa.gz',
'tupBel1' => 'tupaia_belangeri/pep/Tupaia_belangeri.TREESHREW.58.pep.all.fa.gz',
'turTru1' => 'tursiops_truncatus/pep/Tursiops_truncatus.turTru1.58.pep.all.fa.gz',
'vicPac1' => 'vicugna_pacos/pep/Vicugna_pacos.vicPac1.58.pep.all.fa.gz',
'xenTro2' => 'xenopus_tropicalis/pep/Xenopus_tropicalis.JGI4.1.58.pep.all.fa.gz',
);

#	directory name under release-58/mysql/ to find 'seq_region' and
#	'assembly' table copies for GeneScaffold coordinate conversions
my %ensGeneFtpMySqlFileNames_58 = (
'anoCar1' => 'anolis_carolinensis_core_58_1b' ,
'bosTau4' => 'bos_taurus_core_58_4g' ,
'calJac3' => 'callithrix_jacchus_core_58_321' ,
'canFam2' => 'canis_familiaris_core_58_2n' ,
'cavPor3' => 'cavia_porcellus_core_58_3b',
'ce9' =>  'caenorhabditis_elegans_core_58_210' ,
'choHof1' => 'choloepus_hoffmanni_core_58_1b',
'ci2' => 'ciona_intestinalis_core_58_2n',
'cioSav2' => 'ciona_savignyi_core_58_2i',
'danRer6' => 'danio_rerio_core_58_8d',
'dasNov2' => 'dasypus_novemcinctus_core_58_2b',
'dipOrd1' => 'dipodomys_ordii_core_58_1d',
'dm3' => 'drosophila_melanogaster_core_58_513b' ,
'echTel1' => 'echinops_telfairi_core_58_1h',
'equCab2' => 'equus_caballus_core_58_2e',
'eriEur1' => 'erinaceus_europaeus_core_58_1f',
'felCat3' => 'felis_catus_core_58_1g',
'galGal3' => 'gallus_gallus_core_58_2n',
'gasAcu1' => 'gasterosteus_aculeatus_core_58_1k',
'gorGor3' => 'gorilla_gorilla_core_58_3a',
'hg19' => 'homo_sapiens_core_58_37c',
'loxAfr3' => 'loxodonta_africana_core_58_3a',
'rheMac2' => 'macaca_mulatta_core_58_10m',
'macEug1' => 'macropus_eugenii_core_58_1a',
'micMur1' => 'microcebus_murinus_core_58_1c',
'monDom5' => 'monodelphis_domestica_core_58_5j',
'mm9' => 'mus_musculus_core_58_37k',
'myoLuc1' => 'myotis_lucifugus_core_58_1h',
'ochPri2' => 'ochotona_princeps_core_58_1d',
'ornAna1' => 'ornithorhynchus_anatinus_core_58_1l',
'oryCun2' => 'oryctolagus_cuniculus_core_58_2a',
'oryLat2' => 'oryzias_latipes_core_58_1j',
'otoGar1' => 'otolemur_garnettii_core_58_1f',
'panTro2' => 'pan_troglodytes_core_58_21m',
'ponAbe2' => 'pongo_pygmaeus_core_58_1d',
'proCap1' => 'procavia_capensis_core_58_1d',
'pteVam1' => 'pteropus_vampyrus_core_58_1d',
'rn4' => 'rattus_norvegicus_core_58_34z',
'sacCer2' => 'saccharomyces_cerevisiae_core_58_1j',
'sorAra1' => 'sorex_araneus_core_58_1f',
'speTri1' => 'spermophilus_tridecemlineatus_core_58_1h',
'susScr1' => 'sus_scrofa_core_58_9b' ,
'taeGut1' => 'taeniopygia_guttata_core_58_1d',
'fr2' => 'takifugu_rubripes_core_58_4l',
'tarSyr1' => 'tarsius_syrichta_core_58_1d',
'tetNig2' => 'tetraodon_nigroviridis_core_58_8c',
'tupBel1' => 'tupaia_belangeri_core_58_1g',
'turTru1' => 'tursiops_truncatus_core_58_1d',
'vicPac1' => 'vicugna_pacos_core_58_1d',
'xenTro2' => 'xenopus_tropicalis_core_58_41o',
);

# key is UCSC db name, result is FTP file name under the gtf directory
my %ensGeneGtfFileNames_59 = (
'anoCar1' => 'anolis_carolinensis/Anolis_carolinensis.AnoCar1.0.59.gtf.gz',
'bosTau4' => 'bos_taurus/Bos_taurus.Btau_4.0.59.gtf.gz',
'ce9' => 'caenorhabditis_elegans/Caenorhabditis_elegans.WS210.59.gtf.gz',
'calJac3' => 'callithrix_jacchus/Callithrix_jacchus.C_jacchus3.2.1.59.gtf.gz',
'canFam2' => 'canis_familiaris/Canis_familiaris.BROADD2.59.gtf.gz',
'cavPor3' => 'cavia_porcellus/Cavia_porcellus.cavPor3.59.gtf.gz',
'choHof1' => 'choloepus_hoffmanni/Choloepus_hoffmanni.choHof1.59.gtf.gz',
'ci2' => 'ciona_intestinalis/Ciona_intestinalis.JGI2.59.gtf.gz',
'cioSav2' => 'ciona_savignyi/Ciona_savignyi.CSAV2.0.59.gtf.gz',
'danRer6' => 'danio_rerio/Danio_rerio.Zv8.59.gtf.gz',
'dasNov2' => 'dasypus_novemcinctus/Dasypus_novemcinctus.dasNov2.59.gtf.gz',
'dipOrd1' => 'dipodomys_ordii/Dipodomys_ordii.dipOrd1.59.gtf.gz',
'dm3' => 'drosophila_melanogaster/Drosophila_melanogaster.BDGP5.25.59.gtf.gz',
'echTel1' => 'echinops_telfairi/Echinops_telfairi.TENREC.59.gtf.gz',
'equCab2' => 'equus_caballus/Equus_caballus.EquCab2.59.gtf.gz',
'eriEur1' => 'erinaceus_europaeus/Erinaceus_europaeus.HEDGEHOG.59.gtf.gz',
'felCat3' => 'felis_catus/Felis_catus.CAT.59.gtf.gz',
'galGal3' => 'gallus_gallus/Gallus_gallus.WASHUC2.59.gtf.gz',
'gasAcu1' => 'gasterosteus_aculeatus/Gasterosteus_aculeatus.BROADS1.59.gtf.gz',
'gorGor3' => 'gorilla_gorilla/Gorilla_gorilla.gorGor3.59.gtf.gz',
'hg19' => 'homo_sapiens/Homo_sapiens.GRCh37.59.gtf.gz',
'loxAfr3' => 'loxodonta_africana/Loxodonta_africana.loxAfr3.59.gtf.gz',
'rheMac2' => 'macaca_mulatta/Macaca_mulatta.MMUL_1.59.gtf.gz',
'macEug1' => 'macropus_eugenii/Macropus_eugenii.Meug_1.0.59.gtf.gz',
'micMur1' => 'microcebus_murinus/Microcebus_murinus.micMur1.59.gtf.gz',
'monDom5' => 'monodelphis_domestica/Monodelphis_domestica.BROADO5.59.gtf.gz',
'mm9' => 'mus_musculus/Mus_musculus.NCBIM37.59.gtf.gz',
'myoLuc1' => 'myotis_lucifugus/Myotis_lucifugus.MICROBAT1.59.gtf.gz',
'ochPri2' => 'ochotona_princeps/Ochotona_princeps.pika.59.gtf.gz',
'ornAna1' => 'ornithorhynchus_anatinus/Ornithorhynchus_anatinus.OANA5.59.gtf.gz',
'oryCun2' => 'oryctolagus_cuniculus/Oryctolagus_cuniculus.oryCun2.59.gtf.gz',
'oryLat2' => 'oryzias_latipes/Oryzias_latipes.MEDAKA1.59.gtf.gz',
'otoGar1' => 'otolemur_garnettii/Otolemur_garnettii.BUSHBABY1.59.gtf.gz',
'panTro2' => 'pan_troglodytes/Pan_troglodytes.CHIMP2.1.59.gtf.gz',
'ponAbe2' => 'pongo_pygmaeus/Pongo_pygmaeus.PPYG2.59.gtf.gz',
'proCap1' => 'procavia_capensis/Procavia_capensis.proCap1.59.gtf.gz',
'pteVam1' => 'pteropus_vampyrus/Pteropus_vampyrus.pteVam1.59.gtf.gz',
'rn4' => 'rattus_norvegicus/Rattus_norvegicus.RGSC3.4.59.gtf.gz',
'sacCer2' => 'saccharomyces_cerevisiae/Saccharomyces_cerevisiae.EF2.59.gtf.gz',
'sorAra1' => 'sorex_araneus/Sorex_araneus.COMMON_SHREW1.59.gtf.gz',
'speTri1' => 'spermophilus_tridecemlineatus/Spermophilus_tridecemlineatus.SQUIRREL.59.gtf.gz',
'susScr1' => 'sus_scrofa/Sus_scrofa.Sscrofa9.59.gtf.gz',
'taeGut1' => 'taeniopygia_guttata/Taeniopygia_guttata.taeGut3.2.4.59.gtf.gz',
'fr2' => 'takifugu_rubripes/Takifugu_rubripes.FUGU4.59.gtf.gz',
'tarSyr1' => 'tarsius_syrichta/Tarsius_syrichta.tarSyr1.59.gtf.gz',
'tetNig2' => 'tetraodon_nigroviridis/Tetraodon_nigroviridis.TETRAODON8.59.gtf.gz',
'tupBel1' => 'tupaia_belangeri/Tupaia_belangeri.TREESHREW.59.gtf.gz',
'turTru1' => 'tursiops_truncatus/Tursiops_truncatus.turTru1.59.gtf.gz',
'vicPac1' => 'vicugna_pacos/Vicugna_pacos.vicPac1.59.gtf.gz',
'xenTro2' => 'xenopus_tropicalis/Xenopus_tropicalis.JGI4.1.59.gtf.gz',
);

# key is UCSC db name, result is FTP file name under the fasta directory
my %ensGeneFtpPeptideFileNames_59 = (
'anoCar1' => 'anolis_carolinensis/pep/Anolis_carolinensis.AnoCar1.0.59.pep.all.fa.gz',
'bosTau4' => 'bos_taurus/pep/Bos_taurus.Btau_4.0.59.pep.all.fa.gz',
'ce9' => 'caenorhabditis_elegans/pep/Caenorhabditis_elegans.WS210.59.pep.all.fa.gz',
'calJac3' => 'callithrix_jacchus/pep/Callithrix_jacchus.C_jacchus3.2.1.59.pep.all.fa.gz' ,
'canFam2' => 'canis_familiaris/pep/Canis_familiaris.BROADD2.59.pep.all.fa.gz',
'cavPor3' => 'cavia_porcellus/pep/Cavia_porcellus.cavPor3.59.pep.all.fa.gz',
'choHof1' => 'choloepus_hoffmanni/pep/Choloepus_hoffmanni.choHof1.59.pep.all.fa.gz',
'ci2' => 'ciona_intestinalis/pep/Ciona_intestinalis.JGI2.59.pep.all.fa.gz',
'cioSav2' => 'ciona_savignyi/pep/Ciona_savignyi.CSAV2.0.59.pep.all.fa.gz',
'danRer6' => 'danio_rerio/pep/Danio_rerio.Zv8.59.pep.all.fa.gz',
'dasNov2' => 'dasypus_novemcinctus/pep/Dasypus_novemcinctus.dasNov2.59.pep.all.fa.gz',
'dipOrd1' => 'dipodomys_ordii/pep/Dipodomys_ordii.dipOrd1.59.pep.all.fa.gz',
'dm3' => 'drosophila_melanogaster/pep/Drosophila_melanogaster.BDGP5.25.59.pep.all.fa.gz',
'echTel1' => 'echinops_telfairi/pep/Echinops_telfairi.TENREC.59.pep.all.fa.gz',
'equCab2' => 'equus_caballus/pep/Equus_caballus.EquCab2.59.pep.all.fa.gz',
'eriEur1' => 'erinaceus_europaeus/pep/Erinaceus_europaeus.HEDGEHOG.59.pep.all.fa.gz',
'felCat3' => 'felis_catus/pep/Felis_catus.CAT.59.pep.all.fa.gz',
'galGal3' => 'gallus_gallus/pep/Gallus_gallus.WASHUC2.59.pep.all.fa.gz',
'gasAcu1' => 'gasterosteus_aculeatus/pep/Gasterosteus_aculeatus.BROADS1.59.pep.all.fa.gz',
'gorGor3' => 'gorilla_gorilla/pep/Gorilla_gorilla.gorGor3.59.pep.all.fa.gz',
'hg19' => 'homo_sapiens/pep/Homo_sapiens.GRCh37.59.pep.all.fa.gz',
'loxAfr3' => 'loxodonta_africana/pep/Loxodonta_africana.loxAfr3.59.pep.all.fa.gz',
'rheMac2' => 'macaca_mulatta/pep/Macaca_mulatta.MMUL_1.59.pep.all.fa.gz',
'macEug1' => 'macropus_eugenii/pep/Macropus_eugenii.Meug_1.0.59.pep.all.fa.gz',
'micMur1' => 'microcebus_murinus/pep/Microcebus_murinus.micMur1.59.pep.all.fa.gz',
'monDom5' => 'monodelphis_domestica/pep/Monodelphis_domestica.BROADO5.59.pep.all.fa.gz',
'mm9' => 'mus_musculus/pep/Mus_musculus.NCBIM37.59.pep.all.fa.gz',
'myoLuc1' => 'myotis_lucifugus/pep/Myotis_lucifugus.MICROBAT1.59.pep.all.fa.gz',
'ochPri2' => 'ochotona_princeps/pep/Ochotona_princeps.pika.59.pep.all.fa.gz',
'ornAna1' => 'ornithorhynchus_anatinus/pep/Ornithorhynchus_anatinus.OANA5.59.pep.all.fa.gz',
'oryCun2' => 'oryctolagus_cuniculus/pep/Oryctolagus_cuniculus.oryCun2.59.pep.all.fa.gz',
'oryLat2' => 'oryzias_latipes/pep/Oryzias_latipes.MEDAKA1.59.pep.all.fa.gz',
'otoGar1' => 'otolemur_garnettii/pep/Otolemur_garnettii.BUSHBABY1.59.pep.all.fa.gz',
'panTro2' => 'pan_troglodytes/pep/Pan_troglodytes.CHIMP2.1.59.pep.all.fa.gz',
'ponAbe2' => 'pongo_pygmaeus/pep/Pongo_pygmaeus.PPYG2.59.pep.all.fa.gz',
'proCap1' => 'procavia_capensis/pep/Procavia_capensis.proCap1.59.pep.all.fa.gz',
'pteVam1' => 'pteropus_vampyrus/pep/Pteropus_vampyrus.pteVam1.59.pep.all.fa.gz',
'rn4' => 'rattus_norvegicus/pep/Rattus_norvegicus.RGSC3.4.59.pep.all.fa.gz',
'sacCer2' => 'saccharomyces_cerevisiae/pep/Saccharomyces_cerevisiae.EF2.59.pep.all.fa.gz',
'sorAra1' => 'sorex_araneus/pep/Sorex_araneus.COMMON_SHREW1.59.pep.all.fa.gz',
'speTri1' => 'spermophilus_tridecemlineatus/pep/Spermophilus_tridecemlineatus.SQUIRREL.59.pep.all.fa.gz',
'susScr1' => 'sus_scrofa/pep/Sus_scrofa.Sscrofa9.59.pep.all.fa.gz',
'taeGut1' => 'taeniopygia_guttata/pep/Taeniopygia_guttata.taeGut3.2.4.59.pep.all.fa.gz',
'fr2' => 'takifugu_rubripes/pep/Takifugu_rubripes.FUGU4.59.pep.all.fa.gz',
'tarSyr1' => 'tarsius_syrichta/pep/Tarsius_syrichta.tarSyr1.59.pep.all.fa.gz',
'tetNig2' => 'tetraodon_nigroviridis/pep/Tetraodon_nigroviridis.TETRAODON8.59.pep.all.fa.gz',
'tupBel1' => 'tupaia_belangeri/pep/Tupaia_belangeri.TREESHREW.59.pep.all.fa.gz',
'turTru1' => 'tursiops_truncatus/pep/Tursiops_truncatus.turTru1.59.pep.all.fa.gz',
'vicPac1' => 'vicugna_pacos/pep/Vicugna_pacos.vicPac1.59.pep.all.fa.gz',
'xenTro2' => 'xenopus_tropicalis/pep/Xenopus_tropicalis.JGI4.1.59.pep.all.fa.gz',
);

#	directory name under release-59/mysql/ to find 'seq_region' and
#	'assembly' table copies for GeneScaffold coordinate conversions
my %ensGeneFtpMySqlFileNames_59 = (
'anoCar1' => 'anolis_carolinensis_core_59_1c' ,
'bosTau4' => 'bos_taurus_core_59_4h' ,
'calJac3' => 'callithrix_jacchus_core_59_321a' ,
'canFam2' => 'canis_familiaris_core_59_2o' ,
'cavPor3' => 'cavia_porcellus_core_59_3c',
'ce9' =>  'caenorhabditis_elegans_core_59_210a' ,
'choHof1' => 'choloepus_hoffmanni_core_59_1c',
'ci2' => 'ciona_intestinalis_core_59_2o',
'cioSav2' => 'ciona_savignyi_core_59_2j',
'danRer6' => 'danio_rerio_core_59_8e',
'dasNov2' => 'dasypus_novemcinctus_core_59_2c',
'dipOrd1' => 'dipodomys_ordii_core_59_1e',
'dm3' => 'drosophila_melanogaster_core_59_525a' ,
'echTel1' => 'echinops_telfairi_core_59_1i',
'equCab2' => 'equus_caballus_core_59_2f',
'eriEur1' => 'erinaceus_europaeus_core_59_1g',
'felCat3' => 'felis_catus_core_59_1h',
'galGal3' => 'gallus_gallus_core_59_2o',
'gasAcu1' => 'gasterosteus_aculeatus_core_59_1l',
'gorGor3' => 'gorilla_gorilla_core_59_3b',
'hg19' => 'homo_sapiens_core_59_37d',
'loxAfr3' => 'loxodonta_africana_core_59_3b',
'rheMac2' => 'macaca_mulatta_core_59_10n',
'macEug1' => 'macropus_eugenii_core_59_1b',
'micMur1' => 'microcebus_murinus_core_59_1d',
'monDom5' => 'monodelphis_domestica_core_59_5k',
'mm9' => 'mus_musculus_core_59_37l',
'myoLuc1' => 'myotis_lucifugus_core_59_1i',
'ochPri2' => 'ochotona_princeps_core_59_1e',
'ornAna1' => 'ornithorhynchus_anatinus_core_59_1m',
'oryCun2' => 'oryctolagus_cuniculus_core_59_2b',
'oryLat2' => 'oryzias_latipes_core_59_1k',
'otoGar1' => 'otolemur_garnettii_core_59_1g',
'panTro2' => 'pan_troglodytes_core_59_21n',
'ponAbe2' => 'pongo_pygmaeus_core_59_1e',
'proCap1' => 'procavia_capensis_core_59_1e',
'pteVam1' => 'pteropus_vampyrus_core_59_1e',
'rn4' => 'rattus_norvegicus_core_59_34a',
'sacCer2' => 'saccharomyces_cerevisiae_core_59_2a',
'sorAra1' => 'sorex_araneus_core_59_1g',
'speTri1' => 'spermophilus_tridecemlineatus_core_59_1i',
'susScr1' => 'sus_scrofa_core_59_9c' ,
'taeGut1' => 'taeniopygia_guttata_core_59_1e',
'fr2' => 'takifugu_rubripes_core_59_4m',
'tarSyr1' => 'tarsius_syrichta_core_59_1e',
'tetNig2' => 'tetraodon_nigroviridis_core_59_8d',
'tupBel1' => 'tupaia_belangeri_core_59_1h',
'turTru1' => 'tursiops_truncatus_core_59_1e',
'vicPac1' => 'vicugna_pacos_core_59_1e',
'xenTro2' => 'xenopus_tropicalis_core_59_41p',
);

# key is UCSC db name, result is FTP file name under the gtf directory
my %ensGeneGtfFileNames_60 = (
'ailMel1' => 'ailuropoda_melanoleuca/Ailuropoda_melanoleuca.ailMel1.60.gtf.gz' ,
'anoCar1' => 'anolis_carolinensis/Anolis_carolinensis.AnoCar1.0.60.gtf.gz' ,
'bosTau4' => 'bos_taurus/Bos_taurus.Btau_4.0.60.gtf.gz' ,
'ce9' => 'caenorhabditis_elegans/Caenorhabditis_elegans.WS210.60.gtf.gz' ,
'calJac3' => 'callithrix_jacchus/Callithrix_jacchus.C_jacchus3.2.1.60.gtf.gz' ,
'canFam2' => 'canis_familiaris/Canis_familiaris.BROADD2.60.gtf.gz' ,
'cavPor3' => 'cavia_porcellus/Cavia_porcellus.cavPor3.60.gtf.gz' ,
'choHof1' => 'choloepus_hoffmanni/Choloepus_hoffmanni.choHof1.60.gtf.gz' ,
'ci2' => 'ciona_intestinalis/Ciona_intestinalis.JGI2.60.gtf.gz' ,
'cioSav2' => 'ciona_savignyi/Ciona_savignyi.CSAV2.0.60.gtf.gz' ,
'danRer7' => 'danio_rerio/Danio_rerio.Zv9.60.gtf.gz' ,
'dasNov2' => 'dasypus_novemcinctus/Dasypus_novemcinctus.dasNov2.60.gtf.gz' ,
'dipOrd1' => 'dipodomys_ordii/Dipodomys_ordii.dipOrd1.60.gtf.gz' ,
'dm3' => 'drosophila_melanogaster/Drosophila_melanogaster.BDGP5.25.60.gtf.gz' ,
'echTel1' => 'echinops_telfairi/Echinops_telfairi.TENREC.60.gtf.gz' ,
'equCab2' => 'equus_caballus/Equus_caballus.EquCab2.60.gtf.gz' ,
'eriEur1' => 'erinaceus_europaeus/Erinaceus_europaeus.HEDGEHOG.60.gtf.gz' ,
'felCat3' => 'felis_catus/Felis_catus.CAT.60.gtf.gz' ,
'galGal3' => 'gallus_gallus/Gallus_gallus.WASHUC2.60.gtf.gz' ,
'gasAcu1' => 'gasterosteus_aculeatus/Gasterosteus_aculeatus.BROADS1.60.gtf.gz' ,
'gorGor3' => 'gorilla_gorilla/Gorilla_gorilla.gorGor3.60.gtf.gz' ,
'hg19' => 'homo_sapiens/Homo_sapiens.GRCh37.60.gtf.gz' ,
'loxAfr3' => 'loxodonta_africana/Loxodonta_africana.loxAfr3.60.gtf.gz' ,
'rheMac2' => 'macaca_mulatta/Macaca_mulatta.MMUL_1.60.gtf.gz' ,
'macEug1' => 'macropus_eugenii/Macropus_eugenii.Meug_1.0.60.gtf.gz' ,
'micMur1' => 'microcebus_murinus/Microcebus_murinus.micMur1.60.gtf.gz' ,
'monDom5' => 'monodelphis_domestica/Monodelphis_domestica.BROADO5.60.gtf.gz' ,
'mm9' => 'mus_musculus/Mus_musculus.NCBIM37.60.gtf.gz' ,
'myoLuc1' => 'myotis_lucifugus/Myotis_lucifugus.MICROBAT1.60.gtf.gz' ,
'ochPri2' => 'ochotona_princeps/Ochotona_princeps.pika.60.gtf.gz' ,
'ornAna1' => 'ornithorhynchus_anatinus/Ornithorhynchus_anatinus.OANA5.60.gtf.gz' ,
'oryCun2' => 'oryctolagus_cuniculus/Oryctolagus_cuniculus.oryCun2.60.gtf.gz' ,
'oryLat2' => 'oryzias_latipes/Oryzias_latipes.MEDAKA1.60.gtf.gz' ,
'otoGar1' => 'otolemur_garnettii/Otolemur_garnettii.BUSHBABY1.60.gtf.gz' ,
'panTro2' => 'pan_troglodytes/Pan_troglodytes.CHIMP2.1.60.gtf.gz' ,
'ponAbe2' => 'pongo_pygmaeus/Pongo_pygmaeus.PPYG2.60.gtf.gz' ,
'proCap1' => 'procavia_capensis/Procavia_capensis.proCap1.60.gtf.gz' ,
'pteVam1' => 'pteropus_vampyrus/Pteropus_vampyrus.pteVam1.60.gtf.gz' ,
'rn4' => 'rattus_norvegicus/Rattus_norvegicus.RGSC3.4.60.gtf.gz' ,
'sacCer2' => 'saccharomyces_cerevisiae/Saccharomyces_cerevisiae.EF2.60.gtf.gz' ,
'sorAra1' => 'sorex_araneus/Sorex_araneus.COMMON_SHREW1.60.gtf.gz' ,
'speTri1' => 'spermophilus_tridecemlineatus/Spermophilus_tridecemlineatus.SQUIRREL.60.gtf.gz' ,
'susScr1' => 'sus_scrofa/Sus_scrofa.Sscrofa9.60.gtf.gz' ,
'taeGut1' => 'taeniopygia_guttata/Taeniopygia_guttata.taeGut3.2.4.60.gtf.gz' ,
'fr2' => 'takifugu_rubripes/Takifugu_rubripes.FUGU4.60.gtf.gz' ,
'tarSyr1' => 'tarsius_syrichta/Tarsius_syrichta.tarSyr1.60.gtf.gz' ,
'tetNig2' => 'tetraodon_nigroviridis/Tetraodon_nigroviridis.TETRAODON8.60.gtf.gz' ,
'tupBel1' => 'tupaia_belangeri/Tupaia_belangeri.TREESHREW.60.gtf.gz' ,
'turTru1' => 'tursiops_truncatus/Tursiops_truncatus.turTru1.60.gtf.gz' ,
'vicPac1' => 'vicugna_pacos/Vicugna_pacos.vicPac1.60.gtf.gz' ,
'xenTro2' => 'xenopus_tropicalis/Xenopus_tropicalis.JGI4.1.60.gtf.gz' ,
);

# key is UCSC db name, result is FTP file name under the fasta directory
my %ensGeneFtpPeptideFileNames_60 = (
'ailMel1' => 'ailuropoda_melanoleuca/pep/Ailuropoda_melanoleuca.ailMel1.60.pep.all.fa.gz' ,
'anoCar1' => 'anolis_carolinensis/pep/Anolis_carolinensis.AnoCar1.0.60.pep.all.fa.gz' ,
'bosTau4' => 'bos_taurus/pep/Bos_taurus.Btau_4.0.60.pep.all.fa.gz' ,
'ce9' => 'caenorhabditis_elegans/pep/Caenorhabditis_elegans.WS210.60.pep.all.fa.gz' ,
'calJac3' => 'callithrix_jacchus/pep/Callithrix_jacchus.C_jacchus3.2.1.60.pep.all.fa.gz' ,
'canFam2' => 'canis_familiaris/pep/Canis_familiaris.BROADD2.60.pep.all.fa.gz' ,
'cavPor3' => 'cavia_porcellus/pep/Cavia_porcellus.cavPor3.60.pep.all.fa.gz' ,
'choHof1' => 'choloepus_hoffmanni/pep/Choloepus_hoffmanni.choHof1.60.pep.all.fa.gz' ,
'ci2' => 'ciona_intestinalis/pep/Ciona_intestinalis.JGI2.60.pep.all.fa.gz' ,
'cioSav2' => 'ciona_savignyi/pep/Ciona_savignyi.CSAV2.0.60.pep.all.fa.gz' ,
'danRer7' => 'danio_rerio/pep/Danio_rerio.Zv9.60.pep.all.fa.gz' ,
'dasNov2' => 'dasypus_novemcinctus/pep/Dasypus_novemcinctus.dasNov2.60.pep.all.fa.gz' ,
'dipOrd1' => 'dipodomys_ordii/pep/Dipodomys_ordii.dipOrd1.60.pep.all.fa.gz' ,
'dm3' => 'drosophila_melanogaster/pep/Drosophila_melanogaster.BDGP5.25.60.pep.all.fa.gz' ,
'echTel1' => 'echinops_telfairi/pep/Echinops_telfairi.TENREC.60.pep.all.fa.gz' ,
'equCab2' => 'equus_caballus/pep/Equus_caballus.EquCab2.60.pep.all.fa.gz' ,
'eriEur1' => 'erinaceus_europaeus/pep/Erinaceus_europaeus.HEDGEHOG.60.pep.all.fa.gz' ,
'felCat3' => 'felis_catus/pep/Felis_catus.CAT.60.pep.all.fa.gz' ,
'galGal3' => 'gallus_gallus/pep/Gallus_gallus.WASHUC2.60.pep.all.fa.gz' ,
'gasAcu1' => 'gasterosteus_aculeatus/pep/Gasterosteus_aculeatus.BROADS1.60.pep.all.fa.gz' ,
'gorGor3' => 'gorilla_gorilla/pep/Gorilla_gorilla.gorGor3.60.pep.all.fa.gz' ,
'hg19' => 'homo_sapiens/pep/Homo_sapiens.GRCh37.60.pep.all.fa.gz' ,
'loxAfr3' => 'loxodonta_africana/pep/Loxodonta_africana.loxAfr3.60.pep.all.fa.gz' ,
'rheMac2' => 'macaca_mulatta/pep/Macaca_mulatta.MMUL_1.60.pep.all.fa.gz' ,
'macEug1' => 'macropus_eugenii/pep/Macropus_eugenii.Meug_1.0.60.pep.all.fa.gz' ,
'micMur1' => 'microcebus_murinus/pep/Microcebus_murinus.micMur1.60.pep.all.fa.gz' ,
'monDom5' => 'monodelphis_domestica/pep/Monodelphis_domestica.BROADO5.60.pep.all.fa.gz' ,
'mm9' => 'mus_musculus/pep/Mus_musculus.NCBIM37.60.pep.all.fa.gz' ,
'myoLuc1' => 'myotis_lucifugus/pep/Myotis_lucifugus.MICROBAT1.60.pep.all.fa.gz' ,
'ochPri2' => 'ochotona_princeps/pep/Ochotona_princeps.pika.60.pep.all.fa.gz' ,
'ornAna1' => 'ornithorhynchus_anatinus/pep/Ornithorhynchus_anatinus.OANA5.60.pep.all.fa.gz' ,
'oryCun2' => 'oryctolagus_cuniculus/pep/Oryctolagus_cuniculus.oryCun2.60.pep.all.fa.gz' ,
'oryLat2' => 'oryzias_latipes/pep/Oryzias_latipes.MEDAKA1.60.pep.all.fa.gz' ,
'otoGar1' => 'otolemur_garnettii/pep/Otolemur_garnettii.BUSHBABY1.60.pep.all.fa.gz' ,
'panTro2' => 'pan_troglodytes/pep/Pan_troglodytes.CHIMP2.1.60.pep.all.fa.gz' ,
'ponAbe2' => 'pongo_pygmaeus/pep/Pongo_pygmaeus.PPYG2.60.pep.all.fa.gz' ,
'proCap1' => 'procavia_capensis/pep/Procavia_capensis.proCap1.60.pep.all.fa.gz' ,
'pteVam1' => 'pteropus_vampyrus/pep/Pteropus_vampyrus.pteVam1.60.pep.all.fa.gz' ,
'rn4' => 'rattus_norvegicus/pep/Rattus_norvegicus.RGSC3.4.60.pep.all.fa.gz' ,
'sacCer2' => 'saccharomyces_cerevisiae/pep/Saccharomyces_cerevisiae.EF2.60.pep.all.fa.gz' ,
'sorAra1' => 'sorex_araneus/pep/Sorex_araneus.COMMON_SHREW1.60.pep.all.fa.gz' ,
'speTri1' => 'spermophilus_tridecemlineatus/pep/Spermophilus_tridecemlineatus.SQUIRREL.60.pep.all.fa.gz' ,
'susScr1' => 'sus_scrofa/pep/Sus_scrofa.Sscrofa9.60.pep.all.fa.gz' ,
'taeGut1' => 'taeniopygia_guttata/pep/Taeniopygia_guttata.taeGut3.2.4.60.pep.all.fa.gz' ,
'fr2' => 'takifugu_rubripes/pep/Takifugu_rubripes.FUGU4.60.pep.all.fa.gz' ,
'tarSyr1' => 'tarsius_syrichta/pep/Tarsius_syrichta.tarSyr1.60.pep.all.fa.gz' ,
'tetNig2' => 'tetraodon_nigroviridis/pep/Tetraodon_nigroviridis.TETRAODON8.60.pep.all.fa.gz' ,
'tupBel1' => 'tupaia_belangeri/pep/Tupaia_belangeri.TREESHREW.60.pep.all.fa.gz' ,
'turTru1' => 'tursiops_truncatus/pep/Tursiops_truncatus.turTru1.60.pep.all.fa.gz' ,
'vicPac1' => 'vicugna_pacos/pep/Vicugna_pacos.vicPac1.60.pep.all.fa.gz' ,
'xenTro2' => 'xenopus_tropicalis/pep/Xenopus_tropicalis.JGI4.1.60.pep.all.fa.gz' ,
);

#	directory name under release-60/mysql/ to find 'seq_region' and
#	'assembly' table copies for GeneScaffold coordinate conversions
my %ensGeneFtpMySqlFileNames_60 = (
'ailMel1' => 'ailuropoda_melanoleuca_core_60_1' ,
'anoCar1' => 'anolis_carolinensis_core_60_1d' ,
'bosTau4' => 'bos_taurus_core_60_4i' ,
'ce9' => 'caenorhabditis_elegans_core_60_210b' ,
'calJac3' => 'callithrix_jacchus_core_60_321b' ,
'canFam2' => 'canis_familiaris_core_60_2p' ,
'cavPor3' => 'cavia_porcellus_core_60_3d' ,
'choHof1' => 'choloepus_hoffmanni_core_60_1d' ,
'ci2' => 'ciona_intestinalis_core_60_2p' ,
'cioSav2' => 'ciona_savignyi_core_60_2k' ,
'danRer7' => 'danio_rerio_core_60_9' ,
'dasNov2' => 'dasypus_novemcinctus_core_60_2d' ,
'dipOrd1' => 'dipodomys_ordii_core_60_1f' ,
'dm3' => 'drosophila_melanogaster_core_60_525b' ,
'echTel1' => 'echinops_telfairi_core_60_1j' ,
'equCab2' => 'equus_caballus_core_60_2g' ,
'eriEur1' => 'erinaceus_europaeus_core_60_1h' ,
'felCat3' => 'felis_catus_core_60_1i' ,
'galGal3' => 'gallus_gallus_core_60_2p' ,
'gasAcu1' => 'gasterosteus_aculeatus_core_60_1m' ,
'gorGor3' => 'gorilla_gorilla_core_60_3c' ,
'hg19' => 'homo_sapiens_core_60_37e' ,
'loxAfr3' => 'loxodonta_africana_core_60_3c' ,
'rheMac2' => 'macaca_mulatta_core_60_10o' ,
'macEug1' => 'macropus_eugenii_core_60_1c' ,
'micMur1' => 'microcebus_murinus_core_60_1e' ,
'monDom5' => 'monodelphis_domestica_core_60_5l' ,
'mm9' => 'mus_musculus_core_60_37m' ,
'myoLuc1' => 'myotis_lucifugus_core_60_1j' ,
'ochPri2' => 'ochotona_princeps_core_60_1f' ,
'ornAna1' => 'ornithorhynchus_anatinus_core_60_1n' ,
'oryCun2' => 'oryctolagus_cuniculus_core_60_3' ,
'oryLat2' => 'oryzias_latipes_core_60_1l' ,
'otoGar1' => 'otolemur_garnettii_core_60_1h' ,
'panTro2' => 'pan_troglodytes_core_60_21o' ,
'ponAbe2' => 'pongo_pygmaeus_core_60_1f' ,
'proCap1' => 'procavia_capensis_core_60_1f' ,
'pteVam1' => 'pteropus_vampyrus_core_60_1f' ,
'rn4' => 'rattus_norvegicus_core_60_34b' ,
'sacCer2' => 'saccharomyces_cerevisiae_core_60_2b' ,
'sorAra1' => 'sorex_araneus_core_60_1h' ,
'speTri1' => 'spermophilus_tridecemlineatus_core_60_1j' ,
'susScr1' => 'sus_scrofa_core_60_9d' ,
'taeGut1' => 'taeniopygia_guttata_core_60_1f' ,
'fr2' => 'takifugu_rubripes_core_60_4n' ,
'tarSyr1' => 'tarsius_syrichta_core_60_1f' ,
'tetNig2' => 'tetraodon_nigroviridis_core_60_8e' ,
'tupBel1' => 'tupaia_belangeri_core_60_1i' ,
'turTru1' => 'tursiops_truncatus_core_60_1f' ,
'vicPac1' => 'vicugna_pacos_core_60_1f' ,
'xenTro2' => 'xenopus_tropicalis_core_60_41q' ,
);

# key is UCSC db name, result is FTP file name under the gtf directory
my %ensGeneGtfFileNames_61 = (
'ailMel1' => 'ailuropoda_melanoleuca/Ailuropoda_melanoleuca.ailMel1.61.gtf.gz',
'anoCar2' => 'anolis_carolinensis/Anolis_carolinensis.AnoCar2.0.61.gtf.gz',
'bosTau4' => 'bos_taurus/Bos_taurus.Btau_4.0.61.gtf.gz',
'ce10' => 'caenorhabditis_elegans/Caenorhabditis_elegans.WS220.61.gtf.gz',
'calJac3' => 'callithrix_jacchus/Callithrix_jacchus.C_jacchus3.2.1.61.gtf.gz',
'canFam2' => 'canis_familiaris/Canis_familiaris.BROADD2.61.gtf.gz',
'cavPor3' => 'cavia_porcellus/Cavia_porcellus.cavPor3.61.gtf.gz',
'choHof1' => 'choloepus_hoffmanni/Choloepus_hoffmanni.choHof1.61.gtf.gz',
'ci2' => 'ciona_intestinalis/Ciona_intestinalis.JGI2.61.gtf.gz',
'cioSav2' => 'ciona_savignyi/Ciona_savignyi.CSAV2.0.61.gtf.gz',
'danRer7' => 'danio_rerio/Danio_rerio.Zv9.61.gtf.gz',
'dasNov2' => 'dasypus_novemcinctus/Dasypus_novemcinctus.dasNov2.61.gtf.gz',
'dipOrd1' => 'dipodomys_ordii/Dipodomys_ordii.dipOrd1.61.gtf.gz',
'dm3' => 'drosophila_melanogaster/Drosophila_melanogaster.BDGP5.25.61.gtf.gz',
'echTel1' => 'echinops_telfairi/Echinops_telfairi.TENREC.61.gtf.gz',
'equCab2' => 'equus_caballus/Equus_caballus.EquCab2.61.gtf.gz',
'eriEur1' => 'erinaceus_europaeus/Erinaceus_europaeus.HEDGEHOG.61.gtf.gz',
'felCat3' => 'felis_catus/Felis_catus.CAT.61.gtf.gz',
'galGal3' => 'gallus_gallus/Gallus_gallus.WASHUC2.61.gtf.gz',
'gasAcu1' => 'gasterosteus_aculeatus/Gasterosteus_aculeatus.BROADS1.61.gtf.gz',
'gorGor3' => 'gorilla_gorilla/Gorilla_gorilla.gorGor3.61.gtf.gz',
'hg19' => 'homo_sapiens/Homo_sapiens.GRCh37.61.gtf.gz',
'loxAfr3' => 'loxodonta_africana/Loxodonta_africana.loxAfr3.61.gtf.gz',
'rheMac2' => 'macaca_mulatta/Macaca_mulatta.MMUL_1.61.gtf.gz',
'macEug1' => 'macropus_eugenii/Macropus_eugenii.Meug_1.0.61.gtf.gz',
'melGal1' => 'meleagris_gallopavo/Meleagris_gallopavo.UMD2.61.gtf.gz',
'micMur1' => 'microcebus_murinus/Microcebus_murinus.micMur1.61.gtf.gz',
'monDom5' => 'monodelphis_domestica/Monodelphis_domestica.BROADO5.61.gtf.gz',
'mm9' => 'mus_musculus/Mus_musculus.NCBIM37.61.gtf.gz',
'myoLuc1' => 'myotis_lucifugus/Myotis_lucifugus.MICROBAT1.61.gtf.gz',
'ochPri2' => 'ochotona_princeps/Ochotona_princeps.pika.61.gtf.gz',
'ornAna1' => 'ornithorhynchus_anatinus/Ornithorhynchus_anatinus.OANA5.61.gtf.gz',
'oryCun2' => 'oryctolagus_cuniculus/Oryctolagus_cuniculus.oryCun2.61.gtf.gz',
'oryLat2' => 'oryzias_latipes/Oryzias_latipes.MEDAKA1.61.gtf.gz',
'otoGar1' => 'otolemur_garnettii/Otolemur_garnettii.BUSHBABY1.61.gtf.gz',
'panTro2' => 'pan_troglodytes/Pan_troglodytes.CHIMP2.1.61.gtf.gz',
'ponAbe2' => 'pongo_pygmaeus/Pongo_pygmaeus.PPYG2.61.gtf.gz',
'proCap1' => 'procavia_capensis/Procavia_capensis.proCap1.61.gtf.gz',
'pteVam1' => 'pteropus_vampyrus/Pteropus_vampyrus.pteVam1.61.gtf.gz',
'rn4' => 'rattus_norvegicus/Rattus_norvegicus.RGSC3.4.61.gtf.gz',
'sacCer2' => 'saccharomyces_cerevisiae/Saccharomyces_cerevisiae.EF2.61.gtf.gz',
'sorAra1' => 'sorex_araneus/Sorex_araneus.COMMON_SHREW1.61.gtf.gz',
'speTri1' => 'spermophilus_tridecemlineatus/Spermophilus_tridecemlineatus.SQUIRREL.61.gtf.gz',
'susScr1' => 'sus_scrofa/Sus_scrofa.Sscrofa9.61.gtf.gz',
'taeGut1' => 'taeniopygia_guttata/Taeniopygia_guttata.taeGut3.2.4.61.gtf.gz',
'fr2' => 'takifugu_rubripes/Takifugu_rubripes.FUGU4.61.gtf.gz',
'tarSyr1' => 'tarsius_syrichta/Tarsius_syrichta.tarSyr1.61.gtf.gz',
'tetNig2' => 'tetraodon_nigroviridis/Tetraodon_nigroviridis.TETRAODON8.61.gtf.gz',
'tupBel1' => 'tupaia_belangeri/Tupaia_belangeri.TREESHREW.61.gtf.gz',
'turTru1' => 'tursiops_truncatus/Tursiops_truncatus.turTru1.61.gtf.gz',
'vicPac1' => 'vicugna_pacos/Vicugna_pacos.vicPac1.61.gtf.gz',
'xenTro2' => 'xenopus_tropicalis/Xenopus_tropicalis.JGI4.1.61.gtf.gz',
);

# key is UCSC db name, result is FTP file name under the fasta directory
my %ensGeneFtpPeptideFileNames_61 = (
'ailMel1' => 'ailuropoda_melanoleuca/pep/Ailuropoda_melanoleuca.ailMel1.61.pep.all.fa.gz',
'anoCar2' => 'anolis_carolinensis/pep/Anolis_carolinensis.AnoCar2.0.61.pep.all.fa.gz',
'bosTau4' => 'bos_taurus/pep/Bos_taurus.Btau_4.0.61.pep.all.fa.gz',
'ce10' => 'caenorhabditis_elegans/pep/Caenorhabditis_elegans.WS220.61.pep.all.fa.gz',
'calJac3' => 'callithrix_jacchus/pep/Callithrix_jacchus.C_jacchus3.2.1.61.pep.all.fa.gz',
'canFam2' => 'canis_familiaris/pep/Canis_familiaris.BROADD2.61.pep.all.fa.gz',
'cavPor3' => 'cavia_porcellus/pep/Cavia_porcellus.cavPor3.61.pep.all.fa.gz',
'choHof1' => 'choloepus_hoffmanni/pep/Choloepus_hoffmanni.choHof1.61.pep.all.fa.gz',
'ci2' => 'ciona_intestinalis/pep/Ciona_intestinalis.JGI2.61.pep.all.fa.gz',
'cioSav2' => 'ciona_savignyi/pep/Ciona_savignyi.CSAV2.0.61.pep.all.fa.gz',
'danRer7' => 'danio_rerio/pep/Danio_rerio.Zv9.61.pep.all.fa.gz',
'dasNov2' => 'dasypus_novemcinctus/pep/Dasypus_novemcinctus.dasNov2.61.pep.all.fa.gz',
'dipOrd1' => 'dipodomys_ordii/pep/Dipodomys_ordii.dipOrd1.61.pep.all.fa.gz',
'dm3' => 'drosophila_melanogaster/pep/Drosophila_melanogaster.BDGP5.25.61.pep.all.fa.gz',
'echTel1' => 'echinops_telfairi/pep/Echinops_telfairi.TENREC.61.pep.all.fa.gz',
'equCab2' => 'equus_caballus/pep/Equus_caballus.EquCab2.61.pep.all.fa.gz',
'eriEur1' => 'erinaceus_europaeus/pep/Erinaceus_europaeus.HEDGEHOG.61.pep.all.fa.gz',
'felCat3' => 'felis_catus/pep/Felis_catus.CAT.61.pep.all.fa.gz',
'galGal3' => 'gallus_gallus/pep/Gallus_gallus.WASHUC2.61.pep.all.fa.gz',
'gasAcu1' => 'gasterosteus_aculeatus/pep/Gasterosteus_aculeatus.BROADS1.61.pep.all.fa.gz',
'gorGor3' => 'gorilla_gorilla/pep/Gorilla_gorilla.gorGor3.61.pep.all.fa.gz',
'hg19' => 'homo_sapiens/pep/Homo_sapiens.GRCh37.61.pep.all.fa.gz',
'loxAfr3' => 'loxodonta_africana/pep/Loxodonta_africana.loxAfr3.61.pep.all.fa.gz',
'rheMac2' => 'macaca_mulatta/pep/Macaca_mulatta.MMUL_1.61.pep.all.fa.gz',
'macEug1' => 'macropus_eugenii/pep/Macropus_eugenii.Meug_1.0.61.pep.all.fa.gz',
'melGal1' => 'meleagris_gallopavo/pep/Meleagris_gallopavo.UMD2.61.pep.all.fa.gz',
'micMur1' => 'microcebus_murinus/pep/Microcebus_murinus.micMur1.61.pep.all.fa.gz',
'monDom5' => 'monodelphis_domestica/pep/Monodelphis_domestica.BROADO5.61.pep.all.fa.gz',
'mm9' => 'mus_musculus/pep/Mus_musculus.NCBIM37.61.pep.all.fa.gz',
'myoLuc1' => 'myotis_lucifugus/pep/Myotis_lucifugus.MICROBAT1.61.pep.all.fa.gz',
'ochPri2' => 'ochotona_princeps/pep/Ochotona_princeps.pika.61.pep.all.fa.gz',
'ornAna1' => 'ornithorhynchus_anatinus/pep/Ornithorhynchus_anatinus.OANA5.61.pep.all.fa.gz',
'oryCun2' => 'oryctolagus_cuniculus/pep/Oryctolagus_cuniculus.oryCun2.61.pep.all.fa.gz',
'oryLat2' => 'oryzias_latipes/pep/Oryzias_latipes.MEDAKA1.61.pep.all.fa.gz',
'otoGar1' => 'otolemur_garnettii/pep/Otolemur_garnettii.BUSHBABY1.61.pep.all.fa.gz',
'panTro2' => 'pan_troglodytes/pep/Pan_troglodytes.CHIMP2.1.61.pep.all.fa.gz',
'ponAbe2' => 'pongo_pygmaeus/pep/Pongo_pygmaeus.PPYG2.61.pep.all.fa.gz',
'proCap1' => 'procavia_capensis/pep/Procavia_capensis.proCap1.61.pep.all.fa.gz',
'pteVam1' => 'pteropus_vampyrus/pep/Pteropus_vampyrus.pteVam1.61.pep.all.fa.gz',
'rn4' => 'rattus_norvegicus/pep/Rattus_norvegicus.RGSC3.4.61.pep.all.fa.gz',
'sacCer2' => 'saccharomyces_cerevisiae/pep/Saccharomyces_cerevisiae.EF2.61.pep.all.fa.gz',
'sorAra1' => 'sorex_araneus/pep/Sorex_araneus.COMMON_SHREW1.61.pep.all.fa.gz',
'speTri1' => 'spermophilus_tridecemlineatus/pep/Spermophilus_tridecemlineatus.SQUIRREL.61.pep.all.fa.gz',
'susScr1' => 'sus_scrofa/pep/Sus_scrofa.Sscrofa9.61.pep.all.fa.gz',
'taeGut1' => 'taeniopygia_guttata/pep/Taeniopygia_guttata.taeGut3.2.4.61.pep.all.fa.gz',
'fr2' => 'takifugu_rubripes/pep/Takifugu_rubripes.FUGU4.61.pep.all.fa.gz',
'tarSyr1' => 'tarsius_syrichta/pep/Tarsius_syrichta.tarSyr1.61.pep.all.fa.gz',
'tetNig2' => 'tetraodon_nigroviridis/pep/Tetraodon_nigroviridis.TETRAODON8.61.pep.all.fa.gz',
'tupBel1' => 'tupaia_belangeri/pep/Tupaia_belangeri.TREESHREW.61.pep.all.fa.gz',
'turTru1' => 'tursiops_truncatus/pep/Tursiops_truncatus.turTru1.61.pep.all.fa.gz',
'vicPac1' => 'vicugna_pacos/pep/Vicugna_pacos.vicPac1.61.pep.all.fa.gz',
'xenTro2' => 'xenopus_tropicalis/pep/Xenopus_tropicalis.JGI4.1.61.pep.all.fa.gz',
);

#	directory name under release-61/mysql/ to find 'seq_region' and
#	'assembly' table copies for GeneScaffold coordinate conversions
my %ensGeneFtpMySqlFileNames_61 = (
'ailMel1' => 'ailuropoda_melanoleuca_core_61_1a',
'anoCar2' => 'anolis_carolinensis_core_61_2',
'bosTau4' => 'bos_taurus_core_61_4j',
'ce10' => 'caenorhabditis_elegans_core_61_220',
'calJac3' => 'callithrix_jacchus_core_61_321c',
'canFam2' => 'canis_familiaris_core_61_2q',
'cavPor3' => 'cavia_porcellus_core_61_3e',
'choHof1' => 'choloepus_hoffmanni_core_61_1e',
'ci2' => 'ciona_intestinalis_core_61_2q',
'cioSav2' => 'ciona_savignyi_core_61_2l',
'danRer7' => 'danio_rerio_core_61_9a',
'dasNov2' => 'dasypus_novemcinctus_core_61_2e',
'dipOrd1' => 'dipodomys_ordii_core_61_1g',
'dm3' => 'drosophila_melanogaster_core_61_525c',
'echTel1' => 'echinops_telfairi_core_61_1k',
'equCab2' => 'equus_caballus_core_61_2h',
'eriEur1' => 'erinaceus_europaeus_core_61_1i',
'felCat3' => 'felis_catus_core_61_1j',
'galGal3' => 'gallus_gallus_core_61_2q',
'gasAcu1' => 'gasterosteus_aculeatus_core_61_1n',
'gorGor3' => 'gorilla_gorilla_core_61_3d',
'hg19' => 'homo_sapiens_core_61_37f',
'loxAfr3' => 'loxodonta_africana_core_61_3d',
'rheMac2' => 'macaca_mulatta_core_61_10p',
'macEug1' => 'macropus_eugenii_core_61_1d',
'melGal1' => 'meleagris_gallopavo_core_61_21',
'micMur1' => 'microcebus_murinus_core_61_1f',
'monDom5' => 'monodelphis_domestica_core_61_5m',
'mm9' => 'mus_musculus_core_61_37n',
'myoLuc1' => 'myotis_lucifugus_core_61_1k',
'ochPri2' => 'ochotona_princeps_core_61_1g',
'ornAna1' => 'ornithorhynchus_anatinus_core_61_1o',
'oryCun2' => 'oryctolagus_cuniculus_core_61_3a',
'oryLat2' => 'oryzias_latipes_core_61_1m',
'otoGar1' => 'otolemur_garnettii_core_61_1i',
'panTro2' => 'pan_troglodytes_core_61_21p',
'ponAbe2' => 'pongo_pygmaeus_core_61_1g',
'proCap1' => 'procavia_capensis_core_61_1g',
'pteVam1' => 'pteropus_vampyrus_core_61_1g',
'rn4' => 'rattus_norvegicus_core_61_34c',
'sacCer2' => 'saccharomyces_cerevisiae_core_61_2c',
'sorAra1' => 'sorex_araneus_core_61_1i',
'speTri1' => 'spermophilus_tridecemlineatus_core_61_1k',
'susScr1' => 'sus_scrofa_core_61_9e',
'taeGut1' => 'taeniopygia_guttata_core_61_1g',
'fr2' => 'takifugu_rubripes_core_61_4o',
'tarSyr1' => 'tarsius_syrichta_core_61_1g',
'tetNig2' => 'tetraodon_nigroviridis_core_61_8f',
'tupBel1' => 'tupaia_belangeri_core_61_1j',
'turTru1' => 'tursiops_truncatus_core_61_1g',
'vicPac1' => 'vicugna_pacos_core_61_1g',
'xenTro2' => 'xenopus_tropicalis_core_61_41r',
);

my %ensGeneGtfFileNames_62 = (
'ailMel1' => 'ailuropoda_melanoleuca/Ailuropoda_melanoleuca.ailMel1.62.gtf.gz',
'anoCar2' => 'anolis_carolinensis/Anolis_carolinensis.AnoCar2.0.62.gtf.gz',
'bosTau4' => 'bos_taurus/Bos_taurus.Btau_4.0.62.gtf.gz',
'ce10' => 'caenorhabditis_elegans/Caenorhabditis_elegans.WS220.62.gtf.gz',
'calJac3' => 'callithrix_jacchus/Callithrix_jacchus.C_jacchus3.2.1.62.gtf.gz',
'canFam2' => 'canis_familiaris/Canis_familiaris.BROADD2.62.gtf.gz',
'cavPor3' => 'cavia_porcellus/Cavia_porcellus.cavPor3.62.gtf.gz',
'choHof1' => 'choloepus_hoffmanni/Choloepus_hoffmanni.choHof1.62.gtf.gz',
'ci2' => 'ciona_intestinalis/Ciona_intestinalis.JGI2.62.gtf.gz',
'cioSav2' => 'ciona_savignyi/Ciona_savignyi.CSAV2.0.62.gtf.gz',
'danRer7' => 'danio_rerio/Danio_rerio.Zv9.62.gtf.gz',
'dasNov2' => 'dasypus_novemcinctus/Dasypus_novemcinctus.dasNov2.62.gtf.gz',
'dipOrd1' => 'dipodomys_ordii/Dipodomys_ordii.dipOrd1.62.gtf.gz',
'dm3' => 'drosophila_melanogaster/Drosophila_melanogaster.BDGP5.25.62.gtf.gz',
'echTel1' => 'echinops_telfairi/Echinops_telfairi.TENREC.62.gtf.gz',
'equCab2' => 'equus_caballus/Equus_caballus.EquCab2.62.gtf.gz',
'eriEur1' => 'erinaceus_europaeus/Erinaceus_europaeus.HEDGEHOG.62.gtf.gz',
'felCat3' => 'felis_catus/Felis_catus.CAT.62.gtf.gz',
'galGal3' => 'gallus_gallus/Gallus_gallus.WASHUC2.62.gtf.gz',
'gasAcu1' => 'gasterosteus_aculeatus/Gasterosteus_aculeatus.BROADS1.62.gtf.gz',
'gorGor3' => 'gorilla_gorilla/Gorilla_gorilla.gorGor3.62.gtf.gz',
'hg19' => 'homo_sapiens/Homo_sapiens.GRCh37.62.gtf.gz',
'loxAfr3' => 'loxodonta_africana/Loxodonta_africana.loxAfr3.62.gtf.gz',
'rheMac2' => 'macaca_mulatta/Macaca_mulatta.MMUL_1.62.gtf.gz',
'macEug1' => 'macropus_eugenii/Macropus_eugenii.Meug_1.0.62.gtf.gz',
'melGal1' => 'meleagris_gallopavo/Meleagris_gallopavo.UMD2.62.gtf.gz',
'micMur1' => 'microcebus_murinus/Microcebus_murinus.micMur1.62.gtf.gz',
'monDom5' => 'monodelphis_domestica/Monodelphis_domestica.BROADO5.62.gtf.gz',
'mm9' => 'mus_musculus/Mus_musculus.NCBIM37.62.gtf.gz',
'myoLuc1' => 'myotis_lucifugus/Myotis_lucifugus.MICROBAT1.62.gtf.gz',
'nomLeu1' => 'nomascus_leucogenys/Nomascus_leucogenys.Nleu1.0.62.gtf.gz',
'ochPri2' => 'ochotona_princeps/Ochotona_princeps.pika.62.gtf.gz',
'ornAna1' => 'ornithorhynchus_anatinus/Ornithorhynchus_anatinus.OANA5.62.gtf.gz',
'oryCun2' => 'oryctolagus_cuniculus/Oryctolagus_cuniculus.oryCun2.62.gtf.gz',
'oryLat2' => 'oryzias_latipes/Oryzias_latipes.MEDAKA1.62.gtf.gz',
'otoGar1' => 'otolemur_garnettii/Otolemur_garnettii.BUSHBABY1.62.gtf.gz',
'panTro2' => 'pan_troglodytes/Pan_troglodytes.CHIMP2.1.62.gtf.gz',
'ponAbe2' => 'pongo_abelii/Pongo_abelii.PPYG2.62.gtf.gz',
'proCap1' => 'procavia_capensis/Procavia_capensis.proCap1.62.gtf.gz',
'pteVam1' => 'pteropus_vampyrus/Pteropus_vampyrus.pteVam1.62.gtf.gz',
'rn4' => 'rattus_norvegicus/Rattus_norvegicus.RGSC3.4.62.gtf.gz',
'sacCer2' => 'saccharomyces_cerevisiae/Saccharomyces_cerevisiae.EF2.62.gtf.gz',
'sorAra1' => 'sorex_araneus/Sorex_araneus.COMMON_SHREW1.62.gtf.gz',
'speTri1' => 'spermophilus_tridecemlineatus/Spermophilus_tridecemlineatus.SQUIRREL.62.gtf.gz',
'susScr1' => 'sus_scrofa/Sus_scrofa.Sscrofa9.62.gtf.gz',
'taeGut1' => 'taeniopygia_guttata/Taeniopygia_guttata.taeGut3.2.4.62.gtf.gz',
'fr2' => 'takifugu_rubripes/Takifugu_rubripes.FUGU4.62.gtf.gz',
'tarSyr1' => 'tarsius_syrichta/Tarsius_syrichta.tarSyr1.62.gtf.gz',
'tetNig2' => 'tetraodon_nigroviridis/Tetraodon_nigroviridis.TETRAODON8.62.gtf.gz',
'tupBel1' => 'tupaia_belangeri/Tupaia_belangeri.TREESHREW.62.gtf.gz',
'turTru1' => 'tursiops_truncatus/Tursiops_truncatus.turTru1.62.gtf.gz',
'vicPac1' => 'vicugna_pacos/Vicugna_pacos.vicPac1.62.gtf.gz',
'xenTro3' => 'xenopus_tropicalis/Xenopus_tropicalis.JGI_4.2.62.gtf.gz',
);

my %ensGeneFtpPeptideFileNames_62 = (
'ailMel1' => 'ailuropoda_melanoleuca/pep/Ailuropoda_melanoleuca.ailMel1.62.pep.all.fa.gz',
'anoCar2' => 'anolis_carolinensis/pep/Anolis_carolinensis.AnoCar2.0.62.pep.all.fa.gz',
'bosTau4' => 'bos_taurus/pep/Bos_taurus.Btau_4.0.62.pep.all.fa.gz',
'ce10' => 'caenorhabditis_elegans/pep/Caenorhabditis_elegans.WS220.62.pep.all.fa.gz',
'calJac3' => 'callithrix_jacchus/pep/Callithrix_jacchus.C_jacchus3.2.1.62.pep.all.fa.gz',
'canFam2' => 'canis_familiaris/pep/Canis_familiaris.BROADD2.62.pep.all.fa.gz',
'cavPor3' => 'cavia_porcellus/pep/Cavia_porcellus.cavPor3.62.pep.all.fa.gz',
'choHof1' => 'choloepus_hoffmanni/pep/Choloepus_hoffmanni.choHof1.62.pep.all.fa.gz',
'ci2' => 'ciona_intestinalis/pep/Ciona_intestinalis.JGI2.62.pep.all.fa.gz',
'cioSav2' => 'ciona_savignyi/pep/Ciona_savignyi.CSAV2.0.62.pep.all.fa.gz',
'danRer7' => 'danio_rerio/pep/Danio_rerio.Zv9.62.pep.all.fa.gz',
'dasNov2' => 'dasypus_novemcinctus/pep/Dasypus_novemcinctus.dasNov2.62.pep.all.fa.gz',
'dipOrd1' => 'dipodomys_ordii/pep/Dipodomys_ordii.dipOrd1.62.pep.all.fa.gz',
'dm3' => 'drosophila_melanogaster/pep/Drosophila_melanogaster.BDGP5.25.62.pep.all.fa.gz',
'echTel1' => 'echinops_telfairi/pep/Echinops_telfairi.TENREC.62.pep.all.fa.gz',
'equCab2' => 'equus_caballus/pep/Equus_caballus.EquCab2.62.pep.all.fa.gz',
'eriEur1' => 'erinaceus_europaeus/pep/Erinaceus_europaeus.HEDGEHOG.62.pep.all.fa.gz',
'felCat3' => 'felis_catus/pep/Felis_catus.CAT.62.pep.all.fa.gz',
'galGal3' => 'gallus_gallus/pep/Gallus_gallus.WASHUC2.62.pep.all.fa.gz',
'gasAcu1' => 'gasterosteus_aculeatus/pep/Gasterosteus_aculeatus.BROADS1.62.pep.all.fa.gz',
'gorGor3' => 'gorilla_gorilla/pep/Gorilla_gorilla.gorGor3.62.pep.all.fa.gz',
'hg19' => 'homo_sapiens/pep/Homo_sapiens.GRCh37.62.pep.all.fa.gz',
'loxAfr3' => 'loxodonta_africana/pep/Loxodonta_africana.loxAfr3.62.pep.all.fa.gz',
'rheMac2' => 'macaca_mulatta/pep/Macaca_mulatta.MMUL_1.62.pep.all.fa.gz',
'macEug1' => 'macropus_eugenii/pep/Macropus_eugenii.Meug_1.0.62.pep.all.fa.gz',
'melGal1' => 'meleagris_gallopavo/pep/Meleagris_gallopavo.UMD2.62.pep.all.fa.gz',
'micMur1' => 'microcebus_murinus/pep/Microcebus_murinus.micMur1.62.pep.all.fa.gz',
'monDom5' => 'monodelphis_domestica/pep/Monodelphis_domestica.BROADO5.62.pep.all.fa.gz',
'mm9' => 'mus_musculus/pep/Mus_musculus.NCBIM37.62.pep.all.fa.gz',
'myoLuc1' => 'myotis_lucifugus/pep/Myotis_lucifugus.MICROBAT1.62.pep.all.fa.gz',
'nomLeu1' => 'nomascus_leucogenys/pep/Nomascus_leucogenys.Nleu1.0.62.pep.all.fa.gz',
'ochPri2' => 'ochotona_princeps/pep/Ochotona_princeps.pika.62.pep.all.fa.gz',
'ornAna1' => 'ornithorhynchus_anatinus/pep/Ornithorhynchus_anatinus.OANA5.62.pep.all.fa.gz',
'oryCun2' => 'oryctolagus_cuniculus/pep/Oryctolagus_cuniculus.oryCun2.62.pep.all.fa.gz',
'oryLat2' => 'oryzias_latipes/pep/Oryzias_latipes.MEDAKA1.62.pep.all.fa.gz',
'otoGar1' => 'otolemur_garnettii/pep/Otolemur_garnettii.BUSHBABY1.62.pep.all.fa.gz',
'panTro2' => 'pan_troglodytes/pep/Pan_troglodytes.CHIMP2.1.62.pep.all.fa.gz',
'ponAbe2' => 'pongo_abelii/pep/Pongo_abelii.PPYG2.62.pep.all.fa.gz',
'proCap1' => 'procavia_capensis/pep/Procavia_capensis.proCap1.62.pep.all.fa.gz',
'pteVam1' => 'pteropus_vampyrus/pep/Pteropus_vampyrus.pteVam1.62.pep.all.fa.gz',
'rn4' => 'rattus_norvegicus/pep/Rattus_norvegicus.RGSC3.4.62.pep.all.fa.gz',
'sacCer2' => 'saccharomyces_cerevisiae/pep/Saccharomyces_cerevisiae.EF2.62.pep.all.fa.gz',
'sorAra1' => 'sorex_araneus/pep/Sorex_araneus.COMMON_SHREW1.62.pep.all.fa.gz',
'speTri1' => 'spermophilus_tridecemlineatus/pep/Spermophilus_tridecemlineatus.SQUIRREL.62.pep.all.fa.gz',
'susScr1' => 'sus_scrofa/pep/Sus_scrofa.Sscrofa9.62.pep.all.fa.gz',
'taeGut1' => 'taeniopygia_guttata/pep/Taeniopygia_guttata.taeGut3.2.4.62.pep.all.fa.gz',
'fr2' => 'takifugu_rubripes/pep/Takifugu_rubripes.FUGU4.62.pep.all.fa.gz',
'tarSyr1' => 'tarsius_syrichta/pep/Tarsius_syrichta.tarSyr1.62.pep.all.fa.gz',
'tetNig2' => 'tetraodon_nigroviridis/pep/Tetraodon_nigroviridis.TETRAODON8.62.pep.all.fa.gz',
'tupBel1' => 'tupaia_belangeri/pep/Tupaia_belangeri.TREESHREW.62.pep.all.fa.gz',
'turTru1' => 'tursiops_truncatus/pep/Tursiops_truncatus.turTru1.62.pep.all.fa.gz',
'vicPac1' => 'vicugna_pacos/pep/Vicugna_pacos.vicPac1.62.pep.all.fa.gz',
'xenTro3' => 'xenopus_tropicalis/pep/Xenopus_tropicalis.JGI_4.2.62.pep.all.fa.gz',
);

my %ensGeneFtpMySqlFileNames_62 = (
'ailMel1' => 'ailuropoda_melanoleuca_core_62_1b',
'anoCar2' => 'anolis_carolinensis_core_62_2a',
'bosTau4' => 'bos_taurus_core_62_4k',
'ce10' => 'caenorhabditis_elegans_core_62_220a',
'calJac3' => 'callithrix_jacchus_core_62_321d',
'canFam2' => 'canis_familiaris_core_62_2r',
'cavPor3' => 'cavia_porcellus_core_62_3f',
'choHof1' => 'choloepus_hoffmanni_core_62_1f',
'ci2' => 'ciona_intestinalis_core_62_2r',
'cioSav2' => 'ciona_savignyi_core_62_2m',
'danRer7' => 'danio_rerio_core_62_9b',
'dasNov2' => 'dasypus_novemcinctus_core_62_2f',
'dipOrd1' => 'dipodomys_ordii_core_62_1h',
'dm3' => 'drosophila_melanogaster_core_62_525d',
'echTel1' => 'echinops_telfairi_core_62_1l',
'equCab2' => 'equus_caballus_core_62_2i',
'eriEur1' => 'erinaceus_europaeus_core_62_1j',
'felCat3' => 'felis_catus_core_62_1k',
'galGal3' => 'gallus_gallus_core_62_2r',
'gasAcu1' => 'gasterosteus_aculeatus_core_62_1o',
'gorGor3' => 'gorilla_gorilla_core_62_3e',
'hg19' => 'homo_sapiens_core_62_37g',
'loxAfr3' => 'loxodonta_africana_core_62_3e',
'rheMac2' => 'macaca_mulatta_core_62_10q',
'macEug1' => 'macropus_eugenii_core_62_1e',
'melGal1' => 'meleagris_gallopavo_core_62_21a',
'micMur1' => 'microcebus_murinus_core_62_1g',
'monDom5' => 'monodelphis_domestica_core_62_5n',
'mm9' => 'mus_musculus_core_62_37o',
'myoLuc1' => 'myotis_lucifugus_core_62_1l',
'nomLeu1' => 'nomascus_leucogenys_core_62_1',
'ochPri2' => 'ochotona_princeps_core_62_1h',
'ornAna1' => 'ornithorhynchus_anatinus_core_62_1p',
'oryCun2' => 'oryctolagus_cuniculus_core_62_3b',
'oryLat2' => 'oryzias_latipes_core_62_1n',
'otoGar1' => 'otolemur_garnettii_core_62_1j',
'panTro2' => 'pan_troglodytes_core_62_21q',
'ponAbe2' => 'pongo_abelii_core_62_1h',
'proCap1' => 'procavia_capensis_core_62_1h',
'pteVam1' => 'pteropus_vampyrus_core_62_1h',
'rn4' => 'rattus_norvegicus_core_62_34d',
'sacCer2' => 'saccharomyces_cerevisiae_core_62_2d',
'sorAra1' => 'sorex_araneus_core_62_1j',
'speTri1' => 'spermophilus_tridecemlineatus_core_62_1l',
'susScr1' => 'sus_scrofa_core_62_9f',
'taeGut1' => 'taeniopygia_guttata_core_62_1h',
'fr2' => 'takifugu_rubripes_core_62_4p',
'tarSyr1' => 'tarsius_syrichta_core_62_1h',
'tetNig2' => 'tetraodon_nigroviridis_core_62_8g',
'tupBel1' => 'tupaia_belangeri_core_62_1k',
'turTru1' => 'tursiops_truncatus_core_62_1h',
'vicPac1' => 'vicugna_pacos_core_62_1h',
'xenTro3' => 'xenopus_tropicalis_core_62_42',
);

my %ensGeneGtfFileNames_63 = (
'ailMel1' => 'ailuropoda_melanoleuca/Ailuropoda_melanoleuca.ailMel1.63.gtf.gz',
'anoCar2' => 'anolis_carolinensis/Anolis_carolinensis.AnoCar2.0.63.gtf.gz',
'bosTau4' => 'bos_taurus/Bos_taurus.Btau_4.0.63.gtf.gz',
'ce10' => 'caenorhabditis_elegans/Caenorhabditis_elegans.WS220.63.gtf.gz',
'calJac3' => 'callithrix_jacchus/Callithrix_jacchus.C_jacchus3.2.1.63.gtf.gz',
'canFam2' => 'canis_familiaris/Canis_familiaris.BROADD2.63.gtf.gz',
'cavPor3' => 'cavia_porcellus/Cavia_porcellus.cavPor3.63.gtf.gz',
'choHof1' => 'choloepus_hoffmanni/Choloepus_hoffmanni.choHof1.63.gtf.gz',
'ci2' => 'ciona_intestinalis/Ciona_intestinalis.JGI2.63.gtf.gz',
'cioSav2' => 'ciona_savignyi/Ciona_savignyi.CSAV2.0.63.gtf.gz',
'danRer7' => 'danio_rerio/Danio_rerio.Zv9.63.gtf.gz',
'dasNov2' => 'dasypus_novemcinctus/Dasypus_novemcinctus.dasNov2.63.gtf.gz',
'dipOrd1' => 'dipodomys_ordii/Dipodomys_ordii.dipOrd1.63.gtf.gz',
'dm3' => 'drosophila_melanogaster/Drosophila_melanogaster.BDGP5.25.63.gtf.gz',
'echTel1' => 'echinops_telfairi/Echinops_telfairi.TENREC.63.gtf.gz',
'equCab2' => 'equus_caballus/Equus_caballus.EquCab2.63.gtf.gz',
'eriEur1' => 'erinaceus_europaeus/Erinaceus_europaeus.HEDGEHOG.63.gtf.gz',
'felCat3' => 'felis_catus/Felis_catus.CAT.63.gtf.gz',
'galGal3' => 'gallus_gallus/Gallus_gallus.WASHUC2.63.gtf.gz',
'gasAcu1' => 'gasterosteus_aculeatus/Gasterosteus_aculeatus.BROADS1.63.gtf.gz',
'gorGor3' => 'gorilla_gorilla/Gorilla_gorilla.gorGor3.63.gtf.gz',
'hg19' => 'homo_sapiens/Homo_sapiens.GRCh37.63.gtf.gz',
'loxAfr3' => 'loxodonta_africana/Loxodonta_africana.loxAfr3.63.gtf.gz',
'rheMac2' => 'macaca_mulatta/Macaca_mulatta.MMUL_1.63.gtf.gz',
'macEug1' => 'macropus_eugenii/Macropus_eugenii.Meug_1.0.63.gtf.gz',
'melGal1' => 'meleagris_gallopavo/Meleagris_gallopavo.UMD2.63.gtf.gz',
'micMur1' => 'microcebus_murinus/Microcebus_murinus.micMur1.63.gtf.gz',
'monDom5' => 'monodelphis_domestica/Monodelphis_domestica.BROADO5.63.gtf.gz',
'mm9' => 'mus_musculus/Mus_musculus.NCBIM37.63.gtf.gz',
'myoLuc2' => 'myotis_lucifugus/Myotis_lucifugus.Myoluc2.0.63.gtf.gz',
'nomLeu1' => 'nomascus_leucogenys/Nomascus_leucogenys.Nleu1.0.63.gtf.gz',
'ochPri2' => 'ochotona_princeps/Ochotona_princeps.pika.63.gtf.gz',
'ornAna1' => 'ornithorhynchus_anatinus/Ornithorhynchus_anatinus.OANA5.63.gtf.gz',
'oryCun2' => 'oryctolagus_cuniculus/Oryctolagus_cuniculus.oryCun2.63.gtf.gz',
'oryLat2' => 'oryzias_latipes/Oryzias_latipes.MEDAKA1.63.gtf.gz',
'otoGar1' => 'otolemur_garnettii/Otolemur_garnettii.BUSHBABY1.63.gtf.gz',
'panTro2' => 'pan_troglodytes/Pan_troglodytes.CHIMP2.1.63.gtf.gz',
'ponAbe2' => 'pongo_abelii/Pongo_abelii.PPYG2.63.gtf.gz',
'proCap1' => 'procavia_capensis/Procavia_capensis.proCap1.63.gtf.gz',
'pteVam1' => 'pteropus_vampyrus/Pteropus_vampyrus.pteVam1.63.gtf.gz',
'rn4' => 'rattus_norvegicus/Rattus_norvegicus.RGSC3.4.63.gtf.gz',
'sacCer3' => 'saccharomyces_cerevisiae/Saccharomyces_cerevisiae.EF3.63.gtf.gz',
'sorAra1' => 'sorex_araneus/Sorex_araneus.COMMON_SHREW1.63.gtf.gz',
'speTri1' => 'spermophilus_tridecemlineatus/Spermophilus_tridecemlineatus.SQUIRREL.63.gtf.gz',
'susScr1' => 'sus_scrofa/Sus_scrofa.Sscrofa9.63.gtf.gz',
'taeGut1' => 'taeniopygia_guttata/Taeniopygia_guttata.taeGut3.2.4.63.gtf.gz',
'fr2' => 'takifugu_rubripes/Takifugu_rubripes.FUGU4.63.gtf.gz',
'tarSyr1' => 'tarsius_syrichta/Tarsius_syrichta.tarSyr1.63.gtf.gz',
'tetNig2' => 'tetraodon_nigroviridis/Tetraodon_nigroviridis.TETRAODON8.63.gtf.gz',
'tupBel1' => 'tupaia_belangeri/Tupaia_belangeri.TREESHREW.63.gtf.gz',
'turTru1' => 'tursiops_truncatus/Tursiops_truncatus.turTru1.63.gtf.gz',
'vicPac1' => 'vicugna_pacos/Vicugna_pacos.vicPac1.63.gtf.gz',
'xenTro3' => 'xenopus_tropicalis/Xenopus_tropicalis.JGI_4.2.63.gtf.gz',
);

my %ensGeneFtpPeptideFileNames_63 = (
'ailMel1' => 'ailuropoda_melanoleuca/pep/Ailuropoda_melanoleuca.ailMel1.63.pep.all.fa.gz',
'anoCar2' => 'anolis_carolinensis/pep/Anolis_carolinensis.AnoCar2.0.63.pep.all.fa.gz',
'bosTau4' => 'bos_taurus/pep/Bos_taurus.Btau_4.0.63.pep.all.fa.gz',
'ce10' => 'caenorhabditis_elegans/pep/Caenorhabditis_elegans.WS220.63.pep.all.fa.gz',
'calJac3' => 'callithrix_jacchus/pep/Callithrix_jacchus.C_jacchus3.2.1.63.pep.all.fa.gz',
'canFam2' => 'canis_familiaris/pep/Canis_familiaris.BROADD2.63.pep.all.fa.gz',
'cavPor3' => 'cavia_porcellus/pep/Cavia_porcellus.cavPor3.63.pep.all.fa.gz',
'choHof1' => 'choloepus_hoffmanni/pep/Choloepus_hoffmanni.choHof1.63.pep.all.fa.gz',
'ci2' => 'ciona_intestinalis/pep/Ciona_intestinalis.JGI2.63.pep.all.fa.gz',
'cioSav2' => 'ciona_savignyi/pep/Ciona_savignyi.CSAV2.0.63.pep.all.fa.gz',
'danRer7' => 'danio_rerio/pep/Danio_rerio.Zv9.63.pep.all.fa.gz',
'dasNov2' => 'dasypus_novemcinctus/pep/Dasypus_novemcinctus.dasNov2.63.pep.all.fa.gz',
'dipOrd1' => 'dipodomys_ordii/pep/Dipodomys_ordii.dipOrd1.63.pep.all.fa.gz',
'dm3' => 'drosophila_melanogaster/pep/Drosophila_melanogaster.BDGP5.25.63.pep.all.fa.gz',
'echTel1' => 'echinops_telfairi/pep/Echinops_telfairi.TENREC.63.pep.all.fa.gz',
'equCab2' => 'equus_caballus/pep/Equus_caballus.EquCab2.63.pep.all.fa.gz',
'eriEur1' => 'erinaceus_europaeus/pep/Erinaceus_europaeus.HEDGEHOG.63.pep.all.fa.gz',
'felCat3' => 'felis_catus/pep/Felis_catus.CAT.63.pep.all.fa.gz',
'galGal3' => 'gallus_gallus/pep/Gallus_gallus.WASHUC2.63.pep.all.fa.gz',
'gasAcu1' => 'gasterosteus_aculeatus/pep/Gasterosteus_aculeatus.BROADS1.63.pep.all.fa.gz',
'gorGor3' => 'gorilla_gorilla/pep/Gorilla_gorilla.gorGor3.63.pep.all.fa.gz',
'hg19' => 'homo_sapiens/pep/Homo_sapiens.GRCh37.63.pep.all.fa.gz',
'loxAfr3' => 'loxodonta_africana/pep/Loxodonta_africana.loxAfr3.63.pep.all.fa.gz',
'rheMac2' => 'macaca_mulatta/pep/Macaca_mulatta.MMUL_1.63.pep.all.fa.gz',
'macEug1' => 'macropus_eugenii/pep/Macropus_eugenii.Meug_1.0.63.pep.all.fa.gz',
'melGal1' => 'meleagris_gallopavo/pep/Meleagris_gallopavo.UMD2.63.pep.all.fa.gz',
'micMur1' => 'microcebus_murinus/pep/Microcebus_murinus.micMur1.63.pep.all.fa.gz',
'monDom5' => 'monodelphis_domestica/pep/Monodelphis_domestica.BROADO5.63.pep.all.fa.gz',
'mm9' => 'mus_musculus/pep/Mus_musculus.NCBIM37.63.pep.all.fa.gz',
'myoLuc2' => 'myotis_lucifugus/pep/Myotis_lucifugus.Myoluc2.0.63.pep.all.fa.gz',
'nomLeu1' => 'nomascus_leucogenys/pep/Nomascus_leucogenys.Nleu1.0.63.pep.all.fa.gz',
'ochPri2' => 'ochotona_princeps/pep/Ochotona_princeps.pika.63.pep.all.fa.gz',
'ornAna1' => 'ornithorhynchus_anatinus/pep/Ornithorhynchus_anatinus.OANA5.63.pep.all.fa.gz',
'oryCun2' => 'oryctolagus_cuniculus/pep/Oryctolagus_cuniculus.oryCun2.63.pep.all.fa.gz',
'oryLat2' => 'oryzias_latipes/pep/Oryzias_latipes.MEDAKA1.63.pep.all.fa.gz',
'otoGar1' => 'otolemur_garnettii/pep/Otolemur_garnettii.BUSHBABY1.63.pep.all.fa.gz',
'panTro2' => 'pan_troglodytes/pep/Pan_troglodytes.CHIMP2.1.63.pep.all.fa.gz',
'ponAbe2' => 'pongo_abelii/pep/Pongo_abelii.PPYG2.63.pep.all.fa.gz',
'proCap1' => 'procavia_capensis/pep/Procavia_capensis.proCap1.63.pep.all.fa.gz',
'pteVam1' => 'pteropus_vampyrus/pep/Pteropus_vampyrus.pteVam1.63.pep.all.fa.gz',
'rn4' => 'rattus_norvegicus/pep/Rattus_norvegicus.RGSC3.4.63.pep.all.fa.gz',
'sacCer3' => 'saccharomyces_cerevisiae/pep/Saccharomyces_cerevisiae.EF3.63.pep.all.fa.gz',
'sorAra1' => 'sorex_araneus/pep/Sorex_araneus.COMMON_SHREW1.63.pep.all.fa.gz',
'speTri1' => 'spermophilus_tridecemlineatus/pep/Spermophilus_tridecemlineatus.SQUIRREL.63.pep.all.fa.gz',
'susScr1' => 'sus_scrofa/pep/Sus_scrofa.Sscrofa9.63.pep.all.fa.gz',
'taeGut1' => 'taeniopygia_guttata/pep/Taeniopygia_guttata.taeGut3.2.4.63.pep.all.fa.gz',
'fr2' => 'takifugu_rubripes/pep/Takifugu_rubripes.FUGU4.63.pep.all.fa.gz',
'tarSyr1' => 'tarsius_syrichta/pep/Tarsius_syrichta.tarSyr1.63.pep.all.fa.gz',
'tetNig2' => 'tetraodon_nigroviridis/pep/Tetraodon_nigroviridis.TETRAODON8.63.pep.all.fa.gz',
'tupBel1' => 'tupaia_belangeri/pep/Tupaia_belangeri.TREESHREW.63.pep.all.fa.gz',
'turTru1' => 'tursiops_truncatus/pep/Tursiops_truncatus.turTru1.63.pep.all.fa.gz',
'vicPac1' => 'vicugna_pacos/pep/Vicugna_pacos.vicPac1.63.pep.all.fa.gz',
'xenTro3' => 'xenopus_tropicalis/pep/Xenopus_tropicalis.JGI_4.2.63.pep.all.fa.gz',
);

my %ensGeneFtpMySqlFileNames_63 = (
'ailMel1' => 'ailuropoda_melanoleuca_core_63_1',
'anoCar2' => 'anolis_carolinensis_core_63_2',
'bosTau4' => 'bos_taurus_core_63_4',
'ce10' => 'caenorhabditis_elegans_core_63_220',
'calJac3' => 'callithrix_jacchus_core_63_321',
'canFam2' => 'canis_familiaris_core_63_2',
'cavPor3' => 'cavia_porcellus_core_63_3',
'choHof1' => 'choloepus_hoffmanni_core_63_1',
'ci2' => 'ciona_intestinalis_core_63_2',
'cioSav2' => 'ciona_savignyi_core_63_2',
'danRer7' => 'danio_rerio_core_63_9',
'dasNov2' => 'dasypus_novemcinctus_core_63_2',
'dipOrd1' => 'dipodomys_ordii_core_63_1',
'dm3' => 'drosophila_melanogaster_core_63_525',
'echTel1' => 'echinops_telfairi_core_63_1',
'equCab2' => 'equus_caballus_core_63_2',
'eriEur1' => 'erinaceus_europaeus_core_63_1',
'felCat3' => 'felis_catus_core_63_1',
'galGal3' => 'gallus_gallus_core_63_2',
'gasAcu1' => 'gasterosteus_aculeatus_core_63_1',
'gorGor3' => 'gorilla_gorilla_core_63_3',
'hg19' => 'homo_sapiens_core_63_37',
'loxAfr3' => 'loxodonta_africana_core_63_3',
'rheMac2' => 'macaca_mulatta_core_63_10',
'macEug1' => 'macropus_eugenii_core_63_1',
'melGal1' => 'meleagris_gallopavo_core_63_21',
'micMur1' => 'microcebus_murinus_core_63_1',
'monDom5' => 'monodelphis_domestica_core_63_5',
'mm9' => 'mus_musculus_core_63_37',
'myoLuc2' => 'myotis_lucifugus_core_63_2',
'nomLeu1' => 'nomascus_leucogenys_core_63_1',
'ochPri2' => 'ochotona_princeps_core_63_1',
'ornAna1' => 'ornithorhynchus_anatinus_core_63_1',
'oryCun2' => 'oryctolagus_cuniculus_core_63_3',
'oryLat2' => 'oryzias_latipes_core_63_1',
'otoGar1' => 'otolemur_garnettii_core_63_1',
'panTro2' => 'pan_troglodytes_core_63_21',
'ponAbe2' => 'pongo_abelii_core_63_1',
'proCap1' => 'procavia_capensis_core_63_1',
'pteVam1' => 'pteropus_vampyrus_core_63_1',
'rn4' => 'rattus_norvegicus_core_63_34',
'sacCer3' => 'saccharomyces_cerevisiae_core_63_3',
'sorAra1' => 'sorex_araneus_core_63_1',
'speTri1' => 'spermophilus_tridecemlineatus_core_63_1',
'susScr1' => 'sus_scrofa_core_63_9',
'taeGut1' => 'taeniopygia_guttata_core_63_1',
'fr2' => 'takifugu_rubripes_core_63_4',
'tarSyr1' => 'tarsius_syrichta_core_63_1',
'tetNig2' => 'tetraodon_nigroviridis_core_63_8',
'tupBel1' => 'tupaia_belangeri_core_63_1',
'turTru1' => 'tursiops_truncatus_core_63_1',
'vicPac1' => 'vicugna_pacos_core_63_1',
'xenTro3' => 'xenopus_tropicalis_core_63_42',
);

my %ensGeneGtfFileNames_64 = (
'ailMel1' => 'ailuropoda_melanoleuca/Ailuropoda_melanoleuca.ailMel1.64.gtf.gz',
'anoCar2' => 'anolis_carolinensis/Anolis_carolinensis.AnoCar2.0.64.gtf.gz',
'bosTau6' => 'bos_taurus/Bos_taurus.UMD3.1.64.gtf.gz',
'ce10' => 'caenorhabditis_elegans/Caenorhabditis_elegans.WS220.64.gtf.gz',
'calJac3' => 'callithrix_jacchus/Callithrix_jacchus.C_jacchus3.2.1.64.gtf.gz',
'canFam2' => 'canis_familiaris/Canis_familiaris.BROADD2.64.gtf.gz',
'cavPor3' => 'cavia_porcellus/Cavia_porcellus.cavPor3.64.gtf.gz',
'choHof1' => 'choloepus_hoffmanni/Choloepus_hoffmanni.choHof1.64.gtf.gz',
'ci2' => 'ciona_intestinalis/Ciona_intestinalis.JGI2.64.gtf.gz',
'cioSav2' => 'ciona_savignyi/Ciona_savignyi.CSAV2.0.64.gtf.gz',
'danRer7' => 'danio_rerio/Danio_rerio.Zv9.64.gtf.gz',
'dasNov2' => 'dasypus_novemcinctus/Dasypus_novemcinctus.dasNov2.64.gtf.gz',
'dipOrd1' => 'dipodomys_ordii/Dipodomys_ordii.dipOrd1.64.gtf.gz',
'dm3' => 'drosophila_melanogaster/Drosophila_melanogaster.BDGP5.25.64.gtf.gz',
'echTel1' => 'echinops_telfairi/Echinops_telfairi.TENREC.64.gtf.gz',
'equCab2' => 'equus_caballus/Equus_caballus.EquCab2.64.gtf.gz',
'eriEur1' => 'erinaceus_europaeus/Erinaceus_europaeus.HEDGEHOG.64.gtf.gz',
'felCat3' => 'felis_catus/Felis_catus.CAT.64.gtf.gz',
'galGal3' => 'gallus_gallus/Gallus_gallus.WASHUC2.64.gtf.gz',
'gasAcu1' => 'gasterosteus_aculeatus/Gasterosteus_aculeatus.BROADS1.64.gtf.gz',
'gorGor3' => 'gorilla_gorilla/Gorilla_gorilla.gorGor3.1.64.gtf.gz',
'hg19' => 'homo_sapiens/Homo_sapiens.GRCh37.64.gtf.gz',
'loxAfr3' => 'loxodonta_africana/Loxodonta_africana.loxAfr3.64.gtf.gz',
'rheMac2' => 'macaca_mulatta/Macaca_mulatta.MMUL_1.64.gtf.gz',
'macEug1' => 'macropus_eugenii/Macropus_eugenii.Meug_1.0.64.gtf.gz',
'melGal1' => 'meleagris_gallopavo/Meleagris_gallopavo.UMD2.64.gtf.gz',
'micMur1' => 'microcebus_murinus/Microcebus_murinus.micMur1.64.gtf.gz',
'monDom5' => 'monodelphis_domestica/Monodelphis_domestica.BROADO5.64.gtf.gz',
'mm9' => 'mus_musculus/Mus_musculus.NCBIM37.64.gtf.gz',
'myoLuc2' => 'myotis_lucifugus/Myotis_lucifugus.Myoluc2.0.64.gtf.gz',
'nomLeu1' => 'nomascus_leucogenys/Nomascus_leucogenys.Nleu1.0.64.gtf.gz',
'ochPri2' => 'ochotona_princeps/Ochotona_princeps.pika.64.gtf.gz',
'ornAna1' => 'ornithorhynchus_anatinus/Ornithorhynchus_anatinus.OANA5.64.gtf.gz',
'oryCun2' => 'oryctolagus_cuniculus/Oryctolagus_cuniculus.oryCun2.64.gtf.gz',
'oryLat2' => 'oryzias_latipes/Oryzias_latipes.MEDAKA1.64.gtf.gz',
'otoGar1' => 'otolemur_garnettii/Otolemur_garnettii.BUSHBABY1.64.gtf.gz',
'panTro2' => 'pan_troglodytes/Pan_troglodytes.CHIMP2.1.64.gtf.gz',
'petMar2' => 'petromyzon_marinus/Petromyzon_marinus.Petromyzon_marinus_7.0.64.gtf.gz',
'ponAbe2' => 'pongo_abelii/Pongo_abelii.PPYG2.64.gtf.gz',
'proCap1' => 'procavia_capensis/Procavia_capensis.proCap1.64.gtf.gz',
'pteVam1' => 'pteropus_vampyrus/Pteropus_vampyrus.pteVam1.64.gtf.gz',
'rn4' => 'rattus_norvegicus/Rattus_norvegicus.RGSC3.4.64.gtf.gz',
'sacCer3' => 'saccharomyces_cerevisiae/Saccharomyces_cerevisiae.EF3.64.gtf.gz',
'sarHar1' => 'sarcophilus_harrisii/Sarcophilus_harrisii.DEVIL7.0.64.gtf.gz',
'sorAra1' => 'sorex_araneus/Sorex_araneus.COMMON_SHREW1.64.gtf.gz',
'speTri1' => 'spermophilus_tridecemlineatus/Spermophilus_tridecemlineatus.SQUIRREL.64.gtf.gz',
'susScr1' => 'sus_scrofa/Sus_scrofa.Sscrofa9.64.gtf.gz',
'taeGut1' => 'taeniopygia_guttata/Taeniopygia_guttata.taeGut3.2.4.64.gtf.gz',
'fr2' => 'takifugu_rubripes/Takifugu_rubripes.FUGU4.64.gtf.gz',
'tarSyr1' => 'tarsius_syrichta/Tarsius_syrichta.tarSyr1.64.gtf.gz',
'tetNig2' => 'tetraodon_nigroviridis/Tetraodon_nigroviridis.TETRAODON8.64.gtf.gz',
'tupBel1' => 'tupaia_belangeri/Tupaia_belangeri.TREESHREW.64.gtf.gz',
'turTru1' => 'tursiops_truncatus/Tursiops_truncatus.turTru1.64.gtf.gz',
'vicPac1' => 'vicugna_pacos/Vicugna_pacos.vicPac1.64.gtf.gz',
'xenTro3' => 'xenopus_tropicalis/Xenopus_tropicalis.JGI_4.2.64.gtf.gz',
);

my %ensGeneFtpPeptideFileNames_64 = (
'ailMel1' => 'ailuropoda_melanoleuca/pep/Ailuropoda_melanoleuca.ailMel1.64.pep.all.fa.gz',
'anoCar2' => 'anolis_carolinensis/pep/Anolis_carolinensis.AnoCar2.0.64.pep.all.fa.gz',
'bosTau6' => 'bos_taurus/pep/Bos_taurus.UMD3.1.64.pep.all.fa.gz',
'ce10' => 'caenorhabditis_elegans/pep/Caenorhabditis_elegans.WS220.64.pep.all.fa.gz',
'calJac3' => 'callithrix_jacchus/pep/Callithrix_jacchus.C_jacchus3.2.1.64.pep.all.fa.gz',
'canFam2' => 'canis_familiaris/pep/Canis_familiaris.BROADD2.64.pep.all.fa.gz',
'cavPor3' => 'cavia_porcellus/pep/Cavia_porcellus.cavPor3.64.pep.all.fa.gz',
'choHof1' => 'choloepus_hoffmanni/pep/Choloepus_hoffmanni.choHof1.64.pep.all.fa.gz',
'ci2' => 'ciona_intestinalis/pep/Ciona_intestinalis.JGI2.64.pep.all.fa.gz',
'cioSav2' => 'ciona_savignyi/pep/Ciona_savignyi.CSAV2.0.64.pep.all.fa.gz',
'danRer7' => 'danio_rerio/pep/Danio_rerio.Zv9.64.pep.all.fa.gz',
'dasNov2' => 'dasypus_novemcinctus/pep/Dasypus_novemcinctus.dasNov2.64.pep.all.fa.gz',
'dipOrd1' => 'dipodomys_ordii/pep/Dipodomys_ordii.dipOrd1.64.pep.all.fa.gz',
'dm3' => 'drosophila_melanogaster/pep/Drosophila_melanogaster.BDGP5.25.64.pep.all.fa.gz',
'echTel1' => 'echinops_telfairi/pep/Echinops_telfairi.TENREC.64.pep.all.fa.gz',
'equCab2' => 'equus_caballus/pep/Equus_caballus.EquCab2.64.pep.all.fa.gz',
'eriEur1' => 'erinaceus_europaeus/pep/Erinaceus_europaeus.HEDGEHOG.64.pep.all.fa.gz',
'felCat3' => 'felis_catus/pep/Felis_catus.CAT.64.pep.all.fa.gz',
'galGal3' => 'gallus_gallus/pep/Gallus_gallus.WASHUC2.64.pep.all.fa.gz',
'gasAcu1' => 'gasterosteus_aculeatus/pep/Gasterosteus_aculeatus.BROADS1.64.pep.all.fa.gz',
'gorGor3' => 'gorilla_gorilla/pep/Gorilla_gorilla.gorGor3.1.64.pep.all.fa.gz',
'hg19' => 'homo_sapiens/pep/Homo_sapiens.GRCh37.64.pep.all.fa.gz',
'loxAfr3' => 'loxodonta_africana/pep/Loxodonta_africana.loxAfr3.64.pep.all.fa.gz',
'rheMac2' => 'macaca_mulatta/pep/Macaca_mulatta.MMUL_1.64.pep.all.fa.gz',
'macEug1' => 'macropus_eugenii/pep/Macropus_eugenii.Meug_1.0.64.pep.all.fa.gz',
'melGal1' => 'meleagris_gallopavo/pep/Meleagris_gallopavo.UMD2.64.pep.all.fa.gz',
'micMur1' => 'microcebus_murinus/pep/Microcebus_murinus.micMur1.64.pep.all.fa.gz',
'monDom5' => 'monodelphis_domestica/pep/Monodelphis_domestica.BROADO5.64.pep.all.fa.gz',
'mm9' => 'mus_musculus/pep/Mus_musculus.NCBIM37.64.pep.all.fa.gz',
'myoLuc2' => 'myotis_lucifugus/pep/Myotis_lucifugus.Myoluc2.0.64.pep.all.fa.gz',
'nomLeu1' => 'nomascus_leucogenys/pep/Nomascus_leucogenys.Nleu1.0.64.pep.all.fa.gz',
'ochPri2' => 'ochotona_princeps/pep/Ochotona_princeps.pika.64.pep.all.fa.gz',
'ornAna1' => 'ornithorhynchus_anatinus/pep/Ornithorhynchus_anatinus.OANA5.64.pep.all.fa.gz',
'oryCun2' => 'oryctolagus_cuniculus/pep/Oryctolagus_cuniculus.oryCun2.64.pep.all.fa.gz',
'oryLat2' => 'oryzias_latipes/pep/Oryzias_latipes.MEDAKA1.64.pep.all.fa.gz',
'otoGar1' => 'otolemur_garnettii/pep/Otolemur_garnettii.BUSHBABY1.64.pep.all.fa.gz',
'panTro2' => 'pan_troglodytes/pep/Pan_troglodytes.CHIMP2.1.64.pep.all.fa.gz',
'petMar2' => 'petromyzon_marinus/pep/Petromyzon_marinus.Petromyzon_marinus_7.0.64.pep.all.fa.gz',
'ponAbe2' => 'pongo_abelii/pep/Pongo_abelii.PPYG2.64.pep.all.fa.gz',
'proCap1' => 'procavia_capensis/pep/Procavia_capensis.proCap1.64.pep.all.fa.gz',
'pteVam1' => 'pteropus_vampyrus/pep/Pteropus_vampyrus.pteVam1.64.pep.all.fa.gz',
'rn4' => 'rattus_norvegicus/pep/Rattus_norvegicus.RGSC3.4.64.pep.all.fa.gz',
'sacCer3' => 'saccharomyces_cerevisiae/pep/Saccharomyces_cerevisiae.EF3.64.pep.all.fa.gz',
'sarHar1' => 'sarcophilus_harrisii/pep/Sarcophilus_harrisii.DEVIL7.0.64.pep.all.fa.gz',
'sorAra1' => 'sorex_araneus/pep/Sorex_araneus.COMMON_SHREW1.64.pep.all.fa.gz',
'speTri1' => 'spermophilus_tridecemlineatus/pep/Spermophilus_tridecemlineatus.SQUIRREL.64.pep.all.fa.gz',
'susScr1' => 'sus_scrofa/pep/Sus_scrofa.Sscrofa9.64.pep.all.fa.gz',
'taeGut1' => 'taeniopygia_guttata/pep/Taeniopygia_guttata.taeGut3.2.4.64.pep.all.fa.gz',
'fr2' => 'takifugu_rubripes/pep/Takifugu_rubripes.FUGU4.64.pep.all.fa.gz',
'tarSyr1' => 'tarsius_syrichta/pep/Tarsius_syrichta.tarSyr1.64.pep.all.fa.gz',
'tetNig2' => 'tetraodon_nigroviridis/pep/Tetraodon_nigroviridis.TETRAODON8.64.pep.all.fa.gz',
'tupBel1' => 'tupaia_belangeri/pep/Tupaia_belangeri.TREESHREW.64.pep.all.fa.gz',
'turTru1' => 'tursiops_truncatus/pep/Tursiops_truncatus.turTru1.64.pep.all.fa.gz',
'vicPac1' => 'vicugna_pacos/pep/Vicugna_pacos.vicPac1.64.pep.all.fa.gz',
'xenTro3' => 'xenopus_tropicalis/pep/Xenopus_tropicalis.JGI_4.2.64.pep.all.fa.gz',
);

my %ensGeneFtpMySqlFileNames_64 = (
'ailMel1' => 'ailuropoda_melanoleuca_core_64_1',
'anoCar2' => 'anolis_carolinensis_core_64_2',
'bosTau6' => 'bos_taurus_core_64_31',
'ce10' => 'caenorhabditis_elegans_core_64_220',
'calJac3' => 'callithrix_jacchus_core_64_321',
'canFam2' => 'canis_familiaris_core_64_2',
'cavPor3' => 'cavia_porcellus_core_64_3',
'choHof1' => 'choloepus_hoffmanni_core_64_1',
'ci2' => 'ciona_intestinalis_core_64_2',
'cioSav2' => 'ciona_savignyi_core_64_2',
'danRer7' => 'danio_rerio_core_64_9',
'dasNov2' => 'dasypus_novemcinctus_core_64_2',
'dipOrd1' => 'dipodomys_ordii_core_64_1',
'dm3' => 'drosophila_melanogaster_core_64_525',
'echTel1' => 'echinops_telfairi_core_64_1',
'equCab2' => 'equus_caballus_core_64_2',
'eriEur1' => 'erinaceus_europaeus_core_64_1',
'felCat3' => 'felis_catus_core_64_1',
'galGal3' => 'gallus_gallus_core_64_2',
'gasAcu1' => 'gasterosteus_aculeatus_core_64_1',
'gorGor3' => 'gorilla_gorilla_core_64_31',
'hg19' => 'homo_sapiens_core_64_37',
'loxAfr3' => 'loxodonta_africana_core_64_3',
'rheMac2' => 'macaca_mulatta_core_64_10',
'macEug1' => 'macropus_eugenii_core_64_1',
'melGal1' => 'meleagris_gallopavo_core_64_21',
'micMur1' => 'microcebus_murinus_core_64_1',
'monDom5' => 'monodelphis_domestica_core_64_5',
'mm9' => 'mus_musculus_core_64_37',
'myoLuc2' => 'myotis_lucifugus_core_64_2',
'nomLeu1' => 'nomascus_leucogenys_core_64_1',
'ochPri2' => 'ochotona_princeps_core_64_1',
'ornAna1' => 'ornithorhynchus_anatinus_core_64_1',
'oryCun2' => 'oryctolagus_cuniculus_core_64_3',
'oryLat2' => 'oryzias_latipes_core_64_1',
'otoGar1' => 'otolemur_garnettii_core_64_1',
'panTro2' => 'pan_troglodytes_core_64_21',
'petMar2' => 'petromyzon_marinus_core_64_7',
'ponAbe2' => 'pongo_abelii_core_64_1',
'proCap1' => 'procavia_capensis_core_64_1',
'pteVam1' => 'pteropus_vampyrus_core_64_1',
'rn4' => 'rattus_norvegicus_core_64_34',
'sacCer3' => 'saccharomyces_cerevisiae_core_64_3',
'sarHar1' => 'sarcophilus_harrisii_core_64_7',
'sorAra1' => 'sorex_araneus_core_64_1',
'speTri1' => 'spermophilus_tridecemlineatus_core_64_1',
'susScr1' => 'sus_scrofa_core_64_9',
'taeGut1' => 'taeniopygia_guttata_core_64_1',
'fr2' => 'takifugu_rubripes_core_64_4',
'tarSyr1' => 'tarsius_syrichta_core_64_1',
'tetNig2' => 'tetraodon_nigroviridis_core_64_8',
'tupBel1' => 'tupaia_belangeri_core_64_1',
'turTru1' => 'tursiops_truncatus_core_64_1',
'vicPac1' => 'vicugna_pacos_core_64_1',
'xenTro3' => 'xenopus_tropicalis_core_64_42',
);

my %ensGeneGtfFileNames_65 = (
'ailMel1' => 'ailuropoda_melanoleuca/Ailuropoda_melanoleuca.ailMel1.65.gtf.gz',
'anoCar2' => 'anolis_carolinensis/Anolis_carolinensis.AnoCar2.0.65.gtf.gz',
'bosTau6' => 'bos_taurus/Bos_taurus.UMD3.1.65.gtf.gz',
'ce10' => 'caenorhabditis_elegans/Caenorhabditis_elegans.WS220.65.gtf.gz',
'calJac3' => 'callithrix_jacchus/Callithrix_jacchus.C_jacchus3.2.1.65.gtf.gz',
'canFam2' => 'canis_familiaris/Canis_familiaris.BROADD2.65.gtf.gz',
'cavPor3' => 'cavia_porcellus/Cavia_porcellus.cavPor3.65.gtf.gz',
'choHof1' => 'choloepus_hoffmanni/Choloepus_hoffmanni.choHof1.65.gtf.gz',
'ci2' => 'ciona_intestinalis/Ciona_intestinalis.JGI2.65.gtf.gz',
'cioSav2' => 'ciona_savignyi/Ciona_savignyi.CSAV2.0.65.gtf.gz',
'danRer7' => 'danio_rerio/Danio_rerio.Zv9.65.gtf.gz',
'dasNov2' => 'dasypus_novemcinctus/Dasypus_novemcinctus.dasNov2.65.gtf.gz',
'dipOrd1' => 'dipodomys_ordii/Dipodomys_ordii.dipOrd1.65.gtf.gz',
'dm3' => 'drosophila_melanogaster/Drosophila_melanogaster.BDGP5.25.65.gtf.gz',
'echTel1' => 'echinops_telfairi/Echinops_telfairi.TENREC.65.gtf.gz',
'equCab2' => 'equus_caballus/Equus_caballus.EquCab2.65.gtf.gz',
'eriEur1' => 'erinaceus_europaeus/Erinaceus_europaeus.HEDGEHOG.65.gtf.gz',
'felCat3' => 'felis_catus/Felis_catus.CAT.65.gtf.gz',
'gadMor1' => 'gadus_morhua/Gadus_morhua.gadMor1.65.gtf.gz',
'galGal3' => 'gallus_gallus/Gallus_gallus.WASHUC2.65.gtf.gz',
'gasAcu1' => 'gasterosteus_aculeatus/Gasterosteus_aculeatus.BROADS1.65.gtf.gz',
'gorGor3' => 'gorilla_gorilla/Gorilla_gorilla.gorGor3.1.65.gtf.gz',
'hg19' => 'homo_sapiens/Homo_sapiens.GRCh37.65.gtf.gz',
'loxAfr3' => 'loxodonta_africana/Loxodonta_africana.loxAfr3.65.gtf.gz',
'rheMac2' => 'macaca_mulatta/Macaca_mulatta.MMUL_1.65.gtf.gz',
'macEug1' => 'macropus_eugenii/Macropus_eugenii.Meug_1.0.65.gtf.gz',
'melGal1' => 'meleagris_gallopavo/Meleagris_gallopavo.UMD2.65.gtf.gz',
'micMur1' => 'microcebus_murinus/Microcebus_murinus.micMur1.65.gtf.gz',
'monDom5' => 'monodelphis_domestica/Monodelphis_domestica.BROADO5.65.gtf.gz',
'mm9' => 'mus_musculus/Mus_musculus.NCBIM37.65.gtf.gz',
'myoLuc2' => 'myotis_lucifugus/Myotis_lucifugus.Myoluc2.0.65.gtf.gz',
'nomLeu1' => 'nomascus_leucogenys/Nomascus_leucogenys.Nleu1.0.65.gtf.gz',
'ochPri2' => 'ochotona_princeps/Ochotona_princeps.pika.65.gtf.gz',
'ornAna1' => 'ornithorhynchus_anatinus/Ornithorhynchus_anatinus.OANA5.65.gtf.gz',
'oryCun2' => 'oryctolagus_cuniculus/Oryctolagus_cuniculus.oryCun2.65.gtf.gz',
'oryLat2' => 'oryzias_latipes/Oryzias_latipes.MEDAKA1.65.gtf.gz',
'otoGar3' => 'otolemur_garnettii/Otolemur_garnettii.OtoGar3.65.gtf.gz',
'panTro4' => 'pan_troglodytes/Pan_troglodytes.CHIMP2.1.4.65.gtf.gz',
'petMar2' => 'petromyzon_marinus/Petromyzon_marinus.Pmarinus_7.0.65.gtf.gz',
'ponAbe2' => 'pongo_abelii/Pongo_abelii.PPYG2.65.gtf.gz',
'proCap1' => 'procavia_capensis/Procavia_capensis.proCap1.65.gtf.gz',
'pteVam1' => 'pteropus_vampyrus/Pteropus_vampyrus.pteVam1.65.gtf.gz',
'rn4' => 'rattus_norvegicus/Rattus_norvegicus.RGSC3.4.65.gtf.gz',
'sacCer3' => 'saccharomyces_cerevisiae/Saccharomyces_cerevisiae.EF4.65.gtf.gz',
'sarHar1' => 'sarcophilus_harrisii/Sarcophilus_harrisii.DEVIL7.0.65.gtf.gz',
'sorAra1' => 'sorex_araneus/Sorex_araneus.COMMON_SHREW1.65.gtf.gz',
'speTri1' => 'spermophilus_tridecemlineatus/Spermophilus_tridecemlineatus.SQUIRREL.65.gtf.gz',
'susScr1' => 'sus_scrofa/Sus_scrofa.Sscrofa9.65.gtf.gz',
'taeGut1' => 'taeniopygia_guttata/Taeniopygia_guttata.taeGut3.2.4.65.gtf.gz',
'fr2' => 'takifugu_rubripes/Takifugu_rubripes.FUGU4.65.gtf.gz',
'tarSyr1' => 'tarsius_syrichta/Tarsius_syrichta.tarSyr1.65.gtf.gz',
'tetNig2' => 'tetraodon_nigroviridis/Tetraodon_nigroviridis.TETRAODON8.65.gtf.gz',
'tupBel1' => 'tupaia_belangeri/Tupaia_belangeri.TREESHREW.65.gtf.gz',
'turTru1' => 'tursiops_truncatus/Tursiops_truncatus.turTru1.65.gtf.gz',
'vicPac1' => 'vicugna_pacos/Vicugna_pacos.vicPac1.65.gtf.gz',
'xenTro3' => 'xenopus_tropicalis/Xenopus_tropicalis.JGI_4.2.65.gtf.gz',
);

my %ensGeneFtpPeptideFileNames_65 = (
'ailMel1' => 'ailuropoda_melanoleuca/pep/Ailuropoda_melanoleuca.ailMel1.65.pep.all.fa.gz',
'anoCar2' => 'anolis_carolinensis/pep/Anolis_carolinensis.AnoCar2.0.65.pep.all.fa.gz',
'bosTau6' => 'bos_taurus/pep/Bos_taurus.UMD3.1.65.pep.all.fa.gz',
'ce10' => 'caenorhabditis_elegans/pep/Caenorhabditis_elegans.WS220.65.pep.all.fa.gz',
'calJac3' => 'callithrix_jacchus/pep/Callithrix_jacchus.C_jacchus3.2.1.65.pep.all.fa.gz',
'canFam2' => 'canis_familiaris/pep/Canis_familiaris.BROADD2.65.pep.all.fa.gz',
'cavPor3' => 'cavia_porcellus/pep/Cavia_porcellus.cavPor3.65.pep.all.fa.gz',
'choHof1' => 'choloepus_hoffmanni/pep/Choloepus_hoffmanni.choHof1.65.pep.all.fa.gz',
'ci2' => 'ciona_intestinalis/pep/Ciona_intestinalis.JGI2.65.pep.all.fa.gz',
'cioSav2' => 'ciona_savignyi/pep/Ciona_savignyi.CSAV2.0.65.pep.all.fa.gz',
'danRer7' => 'danio_rerio/pep/Danio_rerio.Zv9.65.pep.all.fa.gz',
'dasNov2' => 'dasypus_novemcinctus/pep/Dasypus_novemcinctus.dasNov2.65.pep.all.fa.gz',
'dipOrd1' => 'dipodomys_ordii/pep/Dipodomys_ordii.dipOrd1.65.pep.all.fa.gz',
'dm3' => 'drosophila_melanogaster/pep/Drosophila_melanogaster.BDGP5.65.pep.all.fa.gz',
'echTel1' => 'echinops_telfairi/pep/Echinops_telfairi.TENREC.65.pep.all.fa.gz',
'equCab2' => 'equus_caballus/pep/Equus_caballus.EquCab2.65.pep.all.fa.gz',
'eriEur1' => 'erinaceus_europaeus/pep/Erinaceus_europaeus.HEDGEHOG.65.pep.all.fa.gz',
'felCat3' => 'felis_catus/pep/Felis_catus.CAT.65.pep.all.fa.gz',
'gadMor1' => 'gadus_morhua/pep/Gadus_morhua.gadMor1.65.pep.all.fa.gz',
'galGal3' => 'gallus_gallus/pep/Gallus_gallus.WASHUC2.65.pep.all.fa.gz',
'gasAcu1' => 'gasterosteus_aculeatus/pep/Gasterosteus_aculeatus.BROADS1.65.pep.all.fa.gz',
'gorGor3' => 'gorilla_gorilla/pep/Gorilla_gorilla.gorGor3.1.65.pep.all.fa.gz',
'hg19' => 'homo_sapiens/pep/Homo_sapiens.GRCh37.65.pep.all.fa.gz',
'loxAfr3' => 'loxodonta_africana/pep/Loxodonta_africana.loxAfr3.65.pep.all.fa.gz',
'rheMac2' => 'macaca_mulatta/pep/Macaca_mulatta.MMUL_1.65.pep.all.fa.gz',
'macEug1' => 'macropus_eugenii/pep/Macropus_eugenii.Meug_1.0.65.pep.all.fa.gz',
'melGal1' => 'meleagris_gallopavo/pep/Meleagris_gallopavo.UMD2.65.pep.all.fa.gz',
'micMur1' => 'microcebus_murinus/pep/Microcebus_murinus.micMur1.65.pep.all.fa.gz',
'monDom5' => 'monodelphis_domestica/pep/Monodelphis_domestica.BROADO5.65.pep.all.fa.gz',
'mm9' => 'mus_musculus/pep/Mus_musculus.NCBIM37.65.pep.all.fa.gz',
'myoLuc2' => 'myotis_lucifugus/pep/Myotis_lucifugus.Myoluc2.0.65.pep.all.fa.gz',
'nomLeu1' => 'nomascus_leucogenys/pep/Nomascus_leucogenys.Nleu1.0.65.pep.all.fa.gz',
'ochPri2' => 'ochotona_princeps/pep/Ochotona_princeps.pika.65.pep.all.fa.gz',
'ornAna1' => 'ornithorhynchus_anatinus/pep/Ornithorhynchus_anatinus.OANA5.65.pep.all.fa.gz',
'oryCun2' => 'oryctolagus_cuniculus/pep/Oryctolagus_cuniculus.oryCun2.65.pep.all.fa.gz',
'oryLat2' => 'oryzias_latipes/pep/Oryzias_latipes.MEDAKA1.65.pep.all.fa.gz',
'otoGar3' => 'otolemur_garnettii/pep/Otolemur_garnettii.OtoGar3.65.pep.all.fa.gz',
'panTro4' => 'pan_troglodytes/pep/Pan_troglodytes.CHIMP2.1.4.65.pep.all.fa.gz',
'petMar2' => 'petromyzon_marinus/pep/Petromyzon_marinus.Pmarinus_7.0.65.pep.all.fa.gz',
'ponAbe2' => 'pongo_abelii/pep/Pongo_abelii.PPYG2.65.pep.all.fa.gz',
'proCap1' => 'procavia_capensis/pep/Procavia_capensis.proCap1.65.pep.all.fa.gz',
'pteVam1' => 'pteropus_vampyrus/pep/Pteropus_vampyrus.pteVam1.65.pep.all.fa.gz',
'rn4' => 'rattus_norvegicus/pep/Rattus_norvegicus.RGSC3.4.65.pep.all.fa.gz',
'sacCer3' => 'saccharomyces_cerevisiae/pep/Saccharomyces_cerevisiae.EF4.65.pep.all.fa.gz',
'sarHar1' => 'sarcophilus_harrisii/pep/Sarcophilus_harrisii.DEVIL7.0.65.pep.all.fa.gz',
'sorAra1' => 'sorex_araneus/pep/Sorex_araneus.COMMON_SHREW1.65.pep.all.fa.gz',
'speTri1' => 'spermophilus_tridecemlineatus/pep/Spermophilus_tridecemlineatus.SQUIRREL.65.pep.all.fa.gz',
'susScr1' => 'sus_scrofa/pep/Sus_scrofa.Sscrofa9.65.pep.all.fa.gz',
'taeGut1' => 'taeniopygia_guttata/pep/Taeniopygia_guttata.taeGut3.2.4.65.pep.all.fa.gz',
'fr2' => 'takifugu_rubripes/pep/Takifugu_rubripes.FUGU4.65.pep.all.fa.gz',
'tarSyr1' => 'tarsius_syrichta/pep/Tarsius_syrichta.tarSyr1.65.pep.all.fa.gz',
'tetNig2' => 'tetraodon_nigroviridis/pep/Tetraodon_nigroviridis.TETRAODON8.65.pep.all.fa.gz',
'tupBel1' => 'tupaia_belangeri/pep/Tupaia_belangeri.TREESHREW.65.pep.all.fa.gz',
'turTru1' => 'tursiops_truncatus/pep/Tursiops_truncatus.turTru1.65.pep.all.fa.gz',
'vicPac1' => 'vicugna_pacos/pep/Vicugna_pacos.vicPac1.65.pep.all.fa.gz',
'xenTro3' => 'xenopus_tropicalis/pep/Xenopus_tropicalis.JGI_4.2.65.pep.all.fa.gz',
);

my %ensGeneFtpMySqlFileNames_65 = (
'ailMel1' => 'ailuropoda_melanoleuca_core_65_1',
'anoCar2' => 'anolis_carolinensis_core_65_2',
'bosTau6' => 'bos_taurus_core_65_31',
'ce10' => 'caenorhabditis_elegans_core_65_220',
'calJac3' => 'callithrix_jacchus_core_65_321',
'canFam2' => 'canis_familiaris_core_65_2',
'cavPor3' => 'cavia_porcellus_core_65_3',
'choHof1' => 'choloepus_hoffmanni_core_65_1',
'ci2' => 'ciona_intestinalis_core_65_2',
'cioSav2' => 'ciona_savignyi_core_65_2',
'danRer7' => 'danio_rerio_core_65_9',
'dasNov2' => 'dasypus_novemcinctus_core_65_2',
'dipOrd1' => 'dipodomys_ordii_core_65_1',
'dm3' => 'drosophila_melanogaster_core_65_539',
'echTel1' => 'echinops_telfairi_core_65_1',
'equCab2' => 'equus_caballus_core_65_2',
'eriEur1' => 'erinaceus_europaeus_core_65_1',
'felCat3' => 'felis_catus_core_65_1',
'gadMor1' => 'gadus_morhua_core_65_1',
'galGal3' => 'gallus_gallus_core_65_2',
'gasAcu1' => 'gasterosteus_aculeatus_core_65_1',
'gorGor3' => 'gorilla_gorilla_core_65_31',
'hg19' => 'homo_sapiens_core_65_37',
'loxAfr3' => 'loxodonta_africana_core_65_3',
'rheMac2' => 'macaca_mulatta_core_65_10',
'macEug1' => 'macropus_eugenii_core_65_1',
'melGal1' => 'meleagris_gallopavo_core_65_21',
'micMur1' => 'microcebus_murinus_core_65_1',
'monDom5' => 'monodelphis_domestica_core_65_5',
'mm9' => 'mus_musculus_core_65_37',
'myoLuc2' => 'myotis_lucifugus_core_65_2',
'nomLeu1' => 'nomascus_leucogenys_core_65_1',
'ochPri2' => 'ochotona_princeps_core_65_1',
'ornAna1' => 'ornithorhynchus_anatinus_core_65_1',
'oryCun2' => 'oryctolagus_cuniculus_core_65_3',
'oryLat2' => 'oryzias_latipes_core_65_1',
'otoGar3' => 'otolemur_garnettii_core_65_3',
'panTro4' => 'pan_troglodytes_core_65_214',
'petMar2' => 'petromyzon_marinus_core_65_7',
'ponAbe2' => 'pongo_abelii_core_65_1',
'proCap1' => 'procavia_capensis_core_65_1',
'pteVam1' => 'pteropus_vampyrus_core_65_1',
'rn4' => 'rattus_norvegicus_core_65_34',
'sacCer3' => 'saccharomyces_cerevisiae_core_65_4',
'sarHar1' => 'sarcophilus_harrisii_core_65_7',
'sorAra1' => 'sorex_araneus_core_65_1',
'speTri1' => 'spermophilus_tridecemlineatus_core_65_1',
'susScr1' => 'sus_scrofa_core_65_9',
'taeGut1' => 'taeniopygia_guttata_core_65_1',
'fr2' => 'takifugu_rubripes_core_65_4',
'tarSyr1' => 'tarsius_syrichta_core_65_1',
'tetNig2' => 'tetraodon_nigroviridis_core_65_8',
'tupBel1' => 'tupaia_belangeri_core_65_1',
'turTru1' => 'tursiops_truncatus_core_65_1',
'vicPac1' => 'vicugna_pacos_core_65_1',
'xenTro3' => 'xenopus_tropicalis_core_65_42',
);

my %ensGeneGtfFileNames_67 = (
'ailMel1' => 'ailuropoda_melanoleuca/Ailuropoda_melanoleuca.ailMel1.67.gtf.gz',
'anoCar2' => 'anolis_carolinensis/Anolis_carolinensis.AnoCar2.0.67.gtf.gz',
'bosTau6' => 'bos_taurus/Bos_taurus.UMD3.1.67.gtf.gz',
'ce11' => 'caenorhabditis_elegans/Caenorhabditis_elegans.WBcel215.67.gtf.gz',
'calJac3' => 'callithrix_jacchus/Callithrix_jacchus.C_jacchus3.2.1.67.gtf.gz',
'canFam2' => 'canis_familiaris/Canis_familiaris.BROADD2.67.gtf.gz',
'cavPor3' => 'cavia_porcellus/Cavia_porcellus.cavPor3.67.gtf.gz',
'choHof1' => 'choloepus_hoffmanni/Choloepus_hoffmanni.choHof1.67.gtf.gz',
'ci3' => 'ciona_intestinalis/Ciona_intestinalis.KH.67.gtf.gz',
'cioSav2' => 'ciona_savignyi/Ciona_savignyi.CSAV2.0.67.gtf.gz',
'danRer7' => 'danio_rerio/Danio_rerio.Zv9.67.gtf.gz',
'dasNov2' => 'dasypus_novemcinctus/Dasypus_novemcinctus.dasNov2.67.gtf.gz',
'dipOrd1' => 'dipodomys_ordii/Dipodomys_ordii.dipOrd1.67.gtf.gz',
'dm3' => 'drosophila_melanogaster/Drosophila_melanogaster.BDGP5.67.gtf.gz',
'echTel1' => 'echinops_telfairi/Echinops_telfairi.TENREC.67.gtf.gz',
'equCab2' => 'equus_caballus/Equus_caballus.EquCab2.67.gtf.gz',
'eriEur1' => 'erinaceus_europaeus/Erinaceus_europaeus.HEDGEHOG.67.gtf.gz',
'felCat3' => 'felis_catus/Felis_catus.CAT.67.gtf.gz',
'gadMor1' => 'gadus_morhua/Gadus_morhua.gadMor1.67.gtf.gz',
'galGal3' => 'gallus_gallus/Gallus_gallus.WASHUC2.67.gtf.gz',
'gasAcu1' => 'gasterosteus_aculeatus/Gasterosteus_aculeatus.BROADS1.67.gtf.gz',
'gorGor3' => 'gorilla_gorilla/Gorilla_gorilla.gorGor3.1.67.gtf.gz',
'hg19' => 'homo_sapiens/Homo_sapiens.GRCh37.67.gtf.gz',
'latCha1' => 'latimeria_chalumnae/Latimeria_chalumnae.LatCha1.67.gtf.gz',
'loxAfr3' => 'loxodonta_africana/Loxodonta_africana.loxAfr3.67.gtf.gz',
'rheMac2' => 'macaca_mulatta/Macaca_mulatta.MMUL_1.67.gtf.gz',
'macEug1' => 'macropus_eugenii/Macropus_eugenii.Meug_1.0.67.gtf.gz',
'melGal1' => 'meleagris_gallopavo/Meleagris_gallopavo.UMD2.67.gtf.gz',
'micMur1' => 'microcebus_murinus/Microcebus_murinus.micMur1.67.gtf.gz',
'monDom5' => 'monodelphis_domestica/Monodelphis_domestica.BROADO5.67.gtf.gz',
'mm9' => 'mus_musculus/Mus_musculus.NCBIM37.67.gtf.gz',
'myoLuc2' => 'myotis_lucifugus/Myotis_lucifugus.Myoluc2.0.67.gtf.gz',
'nomLeu1' => 'nomascus_leucogenys/Nomascus_leucogenys.Nleu1.0.67.gtf.gz',
'ochPri2' => 'ochotona_princeps/Ochotona_princeps.pika.67.gtf.gz',
'oreNil1' => 'oreochromis_niloticus/Oreochromis_niloticus.Orenil1.0.67.gtf.gz',
'ornAna1' => 'ornithorhynchus_anatinus/Ornithorhynchus_anatinus.OANA5.67.gtf.gz',
'oryCun2' => 'oryctolagus_cuniculus/Oryctolagus_cuniculus.oryCun2.67.gtf.gz',
'oryLat2' => 'oryzias_latipes/Oryzias_latipes.MEDAKA1.67.gtf.gz',
'otoGar3' => 'otolemur_garnettii/Otolemur_garnettii.OtoGar3.67.gtf.gz',
'panTro4' => 'pan_troglodytes/Pan_troglodytes.CHIMP2.1.4.67.gtf.gz',
'petMar2' => 'petromyzon_marinus/Petromyzon_marinus.Pmarinus_7.0.67.gtf.gz',
'ponAbe2' => 'pongo_abelii/Pongo_abelii.PPYG2.67.gtf.gz',
'proCap1' => 'procavia_capensis/Procavia_capensis.proCap1.67.gtf.gz',
'pteVam1' => 'pteropus_vampyrus/Pteropus_vampyrus.pteVam1.67.gtf.gz',
'rn4' => 'rattus_norvegicus/Rattus_norvegicus.RGSC3.4.67.gtf.gz',
'sacCer3' => 'saccharomyces_cerevisiae/Saccharomyces_cerevisiae.EF4.67.gtf.gz',
'sarHar1' => 'sarcophilus_harrisii/Sarcophilus_harrisii.DEVIL7.0.67.gtf.gz',
'sorAra1' => 'sorex_araneus/Sorex_araneus.COMMON_SHREW1.67.gtf.gz',
'speTri2' => 'spermophilus_tridecemlineatus/Spermophilus_tridecemlineatus.spetri2.67.gtf.gz',
'susScr3' => 'sus_scrofa/Sus_scrofa.Sscrofa10.2.67.gtf.gz',
'taeGut1' => 'taeniopygia_guttata/Taeniopygia_guttata.taeGut3.2.4.67.gtf.gz',
'fr2' => 'takifugu_rubripes/Takifugu_rubripes.FUGU4.67.gtf.gz',
'tarSyr1' => 'Sarsius_syrichta/Tarsius_syrichta.tarSyr1.67.gtf.gz',
'tetNig2' => 'tetraodon_nigroviridis/Tetraodon_nigroviridis.TETRAODON8.67.gtf.gz',
'tupBel1' => 'tupaia_belangeri/Tupaia_belangeri.TREESHREW.67.gtf.gz',
'turTru1' => 'tursiops_truncatus/Tursiops_truncatus.turTru1.67.gtf.gz',
'vicPac1' => 'vicugna_pacos/Vicugna_pacos.vicPac1.67.gtf.gz',
'xenTro3' => 'xenopus_tropicalis/Xenopus_tropicalis.JGI_4.2.67.gtf.gz',
);

my %ensGeneFtpPeptideFileNames_67 = (
'ailMel1' => 'ailuropoda_melanoleuca/pep/Ailuropoda_melanoleuca.ailMel1.67.pep.all.fa.gz',
'anoCar2' => 'anolis_carolinensis/pep/Anolis_carolinensis.AnoCar2.0.67.pep.all.fa.gz',
'bosTau6' => 'bos_taurus/pep/Bos_taurus.UMD3.1.67.pep.all.fa.gz',
'ce11' => 'caenorhabditis_elegans/pep/Caenorhabditis_elegans.WBcel215.67.pep.all.fa.gz',
'calJac3' => 'callithrix_jacchus/pep/Callithrix_jacchus.C_jacchus3.2.1.67.pep.all.fa.gz',
'canFam2' => 'canis_familiaris/pep/Canis_familiaris.BROADD2.67.pep.all.fa.gz',
'cavPor3' => 'cavia_porcellus/pep/Cavia_porcellus.cavPor3.67.pep.all.fa.gz',
'choHof1' => 'choloepus_hoffmanni/pep/Choloepus_hoffmanni.choHof1.67.pep.all.fa.gz',
'ci3' => 'ciona_intestinalis/pep/Ciona_intestinalis.KH.67.pep.all.fa.gz',
'cioSav2' => 'ciona_savignyi/pep/Ciona_savignyi.CSAV2.0.67.pep.all.fa.gz',
'danRer7' => 'danio_rerio/pep/Danio_rerio.Zv9.67.pep.all.fa.gz',
'dasNov2' => 'dasypus_novemcinctus/pep/Dasypus_novemcinctus.dasNov2.67.pep.all.fa.gz',
'dipOrd1' => 'dipodomys_ordii/pep/Dipodomys_ordii.dipOrd1.67.pep.all.fa.gz',
'dm3' => 'drosophila_melanogaster/pep/Drosophila_melanogaster.BDGP5.67.pep.all.fa.gz',
'echTel1' => 'echinops_telfairi/pep/Echinops_telfairi.TENREC.67.pep.all.fa.gz',
'equCab2' => 'equus_caballus/pep/Equus_caballus.EquCab2.67.pep.all.fa.gz',
'eriEur1' => 'erinaceus_europaeus/pep/Erinaceus_europaeus.HEDGEHOG.67.pep.all.fa.gz',
'felCat3' => 'felis_catus/pep/Felis_catus.CAT.67.pep.all.fa.gz',
'gadMor1' => 'gadus_morhua/pep/Gadus_morhua.gadMor1.67.pep.all.fa.gz',
'galGal3' => 'gallus_gallus/pep/Gallus_gallus.WASHUC2.67.pep.all.fa.gz',
'gasAcu1' => 'gasterosteus_aculeatus/pep/Gasterosteus_aculeatus.BROADS1.67.pep.all.fa.gz',
'gorGor3' => 'gorilla_gorilla/pep/Gorilla_gorilla.gorGor3.1.67.pep.all.fa.gz',
'hg19' => 'homo_sapiens/pep/Homo_sapiens.GRCh37.67.pep.all.fa.gz',
'latCha1' => 'latimeria_chalumnae/pep/Latimeria_chalumnae.LatCha1.67.pep.all.fa.gz',
'loxAfr3' => 'loxodonta_africana/pep/Loxodonta_africana.loxAfr3.67.pep.all.fa.gz',
'rheMac2' => 'macaca_mulatta/pep/Macaca_mulatta.MMUL_1.67.pep.all.fa.gz',
'macEug1' => 'macropus_eugenii/pep/Macropus_eugenii.Meug_1.0.67.pep.all.fa.gz',
'melGal1' => 'meleagris_gallopavo/pep/Meleagris_gallopavo.UMD2.67.pep.all.fa.gz',
'micMur1' => 'microcebus_murinus/pep/Microcebus_murinus.micMur1.67.pep.all.fa.gz',
'monDom5' => 'monodelphis_domestica/pep/Monodelphis_domestica.BROADO5.67.pep.all.fa.gz',
'mm9' => 'mus_musculus/pep/Mus_musculus.NCBIM37.67.pep.all.fa.gz',
'myoLuc2' => 'myotis_lucifugus/pep/Myotis_lucifugus.Myoluc2.0.67.pep.all.fa.gz',
'nomLeu1' => 'nomascus_leucogenys/pep/Nomascus_leucogenys.Nleu1.0.67.pep.all.fa.gz',
'ochPri2' => 'ochotona_princeps/pep/Ochotona_princeps.pika.67.pep.all.fa.gz',
'oreNil1' => 'oreochromis_niloticus/pep/Oreochromis_niloticus.Orenil1.0.67.pep.all.fa.gz',
'ornAna1' => 'ornithorhynchus_anatinus/pep/Ornithorhynchus_anatinus.OANA5.67.pep.all.fa.gz',
'oryCun2' => 'oryctolagus_cuniculus/pep/Oryctolagus_cuniculus.oryCun2.67.pep.all.fa.gz',
'oryLat2' => 'oryzias_latipes/pep/Oryzias_latipes.MEDAKA1.67.pep.all.fa.gz',
'otoGar3' => 'otolemur_garnettii/pep/Otolemur_garnettii.OtoGar3.67.pep.all.fa.gz',
'panTro4' => 'pan_troglodytes/pep/Pan_troglodytes.CHIMP2.1.4.67.pep.all.fa.gz',
'petMar2' => 'petromyzon_marinus/pep/Petromyzon_marinus.Pmarinus_7.0.67.pep.all.fa.gz',
'ponAbe2' => 'pongo_abelii/pep/Pongo_abelii.PPYG2.67.pep.all.fa.gz',
'proCap1' => 'procavia_capensis/pep/Procavia_capensis.proCap1.67.pep.all.fa.gz',
'pteVam1' => 'pteropus_vampyrus/pep/Pteropus_vampyrus.pteVam1.67.pep.all.fa.gz',
'rn4' => 'rattus_norvegicus/pep/Rattus_norvegicus.RGSC3.4.67.pep.all.fa.gz',
'sacCer3' => 'saccharomyces_cerevisiae/pep/Saccharomyces_cerevisiae.EF4.67.pep.all.fa.gz',
'sarHar1' => 'sarcophilus_harrisii/pep/Sarcophilus_harrisii.DEVIL7.0.67.pep.all.fa.gz',
'sorAra1' => 'sorex_araneus/pep/Sorex_araneus.COMMON_SHREW1.67.pep.all.fa.gz',
'speTri2' => 'spermophilus_tridecemlineatus/pep/Spermophilus_tridecemlineatus.spetri2.67.pep.all.fa.gz',
'susScr3' => 'sus_scrofa/pep/Sus_scrofa.Sscrofa10.2.67.pep.all.fa.gz',
'taeGut1' => 'taeniopygia_guttata/pep/Taeniopygia_guttata.taeGut3.2.4.67.pep.all.fa.gz',
'fr2' => 'takifugu_rubripes/pep/Takifugu_rubripes.FUGU4.67.pep.all.fa.gz',
'tarSyr1' => 'tarsius_syrichta/pep/Tarsius_syrichta.tarSyr1.67.pep.all.fa.gz',
'tetNig2' => 'tetraodon_nigroviridis/pep/Tetraodon_nigroviridis.TETRAODON8.67.pep.all.fa.gz',
'tupBel1' => 'tupaia_belangeri/pep/Tupaia_belangeri.TREESHREW.67.pep.all.fa.gz',
'turTru1' => 'tursiops_truncatus/pep/Tursiops_truncatus.turTru1.67.pep.all.fa.gz',
'vicPac1' => 'vicugna_pacos/pep/Vicugna_pacos.vicPac1.67.pep.all.fa.gz',
'xenTro3' => 'xenopus_tropicalis/pep/Xenopus_tropicalis.JGI_4.2.67.pep.all.fa.gz',
);

my %ensGeneFtpMySqlFileNames_67 = (
'ailMel1' => 'ailuropoda_melanoleuca_core_67_1',
'anoCar2' => 'anolis_carolinensis_core_67_2',
'bosTau6' => 'bos_taurus_core_67_31',
'ce11' => 'caenorhabditis_elegans_core_67_230',
'calJac3' => 'callithrix_jacchus_core_67_321',
'canFam2' => 'canis_familiaris_core_67_2',
'cavPor3' => 'cavia_porcellus_core_67_3',
'choHof1' => 'choloepus_hoffmanni_core_67_1',
'ci3' => 'ciona_intestinalis_core_67_3',
'cioSav2' => 'ciona_savignyi_core_67_2',
'danRer7' => 'danio_rerio_core_67_9',
'dasNov2' => 'dasypus_novemcinctus_core_67_2',
'dipOrd1' => 'dipodomys_ordii_core_67_1',
'dm3' => 'drosophila_melanogaster_core_67_539',
'echTel1' => 'echinops_telfairi_core_67_1',
'equCab2' => 'equus_caballus_core_67_2',
'eriEur1' => 'erinaceus_europaeus_core_67_1',
'felCat3' => 'felis_catus_core_67_1',
'gadMor1' => 'gadus_morhua_core_67_1',
'galGal3' => 'gallus_gallus_core_67_2',
'gasAcu1' => 'gasterosteus_aculeatus_core_67_1',
'gorGor3' => 'gorilla_gorilla_core_67_31',
'hg19' => 'homo_sapiens_core_67_37',
'latCha1' => 'latimeria_chalumnae_core_67_1',
'loxAfr3' => 'loxodonta_africana_core_67_3',
'rheMac2' => 'macaca_mulatta_core_67_10',
'macEug1' => 'macropus_eugenii_core_67_1',
'melGal1' => 'meleagris_gallopavo_core_67_21',
'micMur1' => 'microcebus_murinus_core_67_1',
'monDom5' => 'monodelphis_domestica_core_67_5',
'mm9' => 'mus_musculus_core_67_37',
'myoLuc2' => 'myotis_lucifugus_core_67_2',
'nomLeu1' => 'nomascus_leucogenys_core_67_1',
'ochPri2' => 'ochotona_princeps_core_67_1',
'oreNil1' => 'oreochromis_niloticus_core_67_1',
'ornAna1' => 'ornithorhynchus_anatinus_core_67_1',
'oryCun2' => 'oryctolagus_cuniculus_core_67_3',
'oryLat2' => 'oryzias_latipes_core_67_1',
'otoGar3' => 'otolemur_garnettii_core_67_3',
'panTro4' => 'pan_troglodytes_core_67_214',
'petMar2' => 'petromyzon_marinus_core_67_7',
'ponAbe2' => 'pongo_abelii_core_67_1',
'proCap1' => 'procavia_capensis_core_67_1',
'pteVam1' => 'pteropus_vampyrus_core_67_1',
'rn4' => 'rattus_norvegicus_core_67_34',
'sacCer3' => 'saccharomyces_cerevisiae_core_67_4',
'sarHar1' => 'sarcophilus_harrisii_core_67_7',
'sorAra1' => 'sorex_araneus_core_67_1',
'speTri2' => 'spermophilus_tridecemlineatus_core_67_2',
'susScr3' => 'sus_scrofa_core_67_102',
'taeGut1' => 'taeniopygia_guttata_core_67_1',
'fr2' => 'takifugu_rubripes_core_67_4',
'tarSyr1' => 'tarsius_syrichta_core_67_1',
'tetNig2' => 'tetraodon_nigroviridis_core_67_8',
'tupBel1' => 'tupaia_belangeri_core_67_1',
'turTru1' => 'tursiops_truncatus_core_67_1',
'vicPac1' => 'vicugna_pacos_core_67_1',
'xenTro3' => 'xenopus_tropicalis_core_67_42',
);

my %ensGeneGtfFileNames_68 = (
'ailMel1' => 'ailuropoda_melanoleuca/Ailuropoda_melanoleuca.ailMel1.68.gtf.gz',
'anoCar2' => 'anolis_carolinensis/Anolis_carolinensis.AnoCar2.0.68.gtf.gz',
'bosTau6' => 'bos_taurus/Bos_taurus.UMD3.1.68.gtf.gz',
'ce11' => 'caenorhabditis_elegans/Caenorhabditis_elegans.WBcel215.68.gtf.gz',
'calJac3' => 'callithrix_jacchus/Callithrix_jacchus.C_jacchus3.2.1.68.gtf.gz',
'canFam3' => 'canis_familiaris/Canis_familiaris.CanFam3.1.68.gtf.gz',
'cavPor3' => 'cavia_porcellus/Cavia_porcellus.cavPor3.68.gtf.gz',
'choHof1' => 'choloepus_hoffmanni/Choloepus_hoffmanni.choHof1.68.gtf.gz',
'ci3' => 'ciona_intestinalis/Ciona_intestinalis.KH.68.gtf.gz',
'cioSav2' => 'ciona_savignyi/Ciona_savignyi.CSAV2.0.68.gtf.gz',
'danRer7' => 'danio_rerio/Danio_rerio.Zv9.68.gtf.gz',
'dasNov2' => 'dasypus_novemcinctus/Dasypus_novemcinctus.dasNov2.68.gtf.gz',
'dipOrd1' => 'dipodomys_ordii/Dipodomys_ordii.dipOrd1.68.gtf.gz',
'dm3' => 'drosophila_melanogaster/Drosophila_melanogaster.BDGP5.68.gtf.gz',
'echTel1' => 'echinops_telfairi/Echinops_telfairi.TENREC.68.gtf.gz',
'equCab2' => 'equus_caballus/Equus_caballus.EquCab2.68.gtf.gz',
'eriEur1' => 'erinaceus_europaeus/Erinaceus_europaeus.HEDGEHOG.68.gtf.gz',
'felCat3' => 'felis_catus/Felis_catus.CAT.68.gtf.gz',
'gadMor1' => 'gadus_morhua/Gadus_morhua.gadMor1.68.gtf.gz',
'galGal3' => 'gallus_gallus/Gallus_gallus.WASHUC2.68.gtf.gz',
'gasAcu1' => 'gasterosteus_aculeatus/Gasterosteus_aculeatus.BROADS1.68.gtf.gz',
'gorGor3' => 'gorilla_gorilla/Gorilla_gorilla.gorGor3.1.68.gtf.gz',
'hg19' => 'homo_sapiens/Homo_sapiens.GRCh37.68.gtf.gz',
'speTri2' => 'ictidomys_tridecemlineatus/Ictidomys_tridecemlineatus.spetri2.68.gtf.gz',
'latCha1' => 'latimeria_chalumnae/Latimeria_chalumnae.LatCha1.68.gtf.gz',
'loxAfr3' => 'loxodonta_africana/Loxodonta_africana.loxAfr3.68.gtf.gz',
'rheMac2' => 'macaca_mulatta/Macaca_mulatta.MMUL_1.68.gtf.gz',
'macEug1' => 'macropus_eugenii/Macropus_eugenii.Meug_1.0.68.gtf.gz',
'melGal1' => 'meleagris_gallopavo/Meleagris_gallopavo.UMD2.68.gtf.gz',
'micMur1' => 'microcebus_murinus/Microcebus_murinus.micMur1.68.gtf.gz',
'monDom5' => 'monodelphis_domestica/Monodelphis_domestica.BROADO5.68.gtf.gz',
'mm10' => 'mus_musculus/Mus_musculus.GRCm38.68.gtf.gz',
'myoLuc2' => 'myotis_lucifugus/Myotis_lucifugus.Myoluc2.0.68.gtf.gz',
'nomLeu1' => 'nomascus_leucogenys/Nomascus_leucogenys.Nleu1.0.68.gtf.gz',
'ochPri2' => 'ochotona_princeps/Ochotona_princeps.pika.68.gtf.gz',
'oreNil1' => 'oreochromis_niloticus/Oreochromis_niloticus.Orenil1.0.68.gtf.gz',
'ornAna1' => 'ornithorhynchus_anatinus/Ornithorhynchus_anatinus.OANA5.68.gtf.gz',
'oryCun2' => 'oryctolagus_cuniculus/Oryctolagus_cuniculus.oryCun2.68.gtf.gz',
'oryLat2' => 'oryzias_latipes/Oryzias_latipes.MEDAKA1.68.gtf.gz',
'otoGar3' => 'otolemur_garnettii/Otolemur_garnettii.OtoGar3.68.gtf.gz',
'panTro4' => 'pan_troglodytes/Pan_troglodytes.CHIMP2.1.4.68.gtf.gz',
'pelSin1' => 'pelodiscus_sinensis/Pelodiscus_sinensis.PelSin_1.0.68.gtf.gz',
'petMar2' => 'petromyzon_marinus/Petromyzon_marinus.Pmarinus_7.0.68.gtf.gz',
'ponAbe2' => 'pongo_abelii/Pongo_abelii.PPYG2.68.gtf.gz',
'proCap1' => 'procavia_capensis/Procavia_capensis.proCap1.68.gtf.gz',
'pteVam1' => 'pteropus_vampyrus/Pteropus_vampyrus.pteVam1.68.gtf.gz',
'rn4' => 'rattus_norvegicus/Rattus_norvegicus.RGSC3.4.68.gtf.gz',
'sacCer3' => 'saccharomyces_cerevisiae/Saccharomyces_cerevisiae.EF4.68.gtf.gz',
'sarHar1' => 'sarcophilus_harrisii/Sarcophilus_harrisii.DEVIL7.0.68.gtf.gz',
'sorAra1' => 'sorex_araneus/Sorex_araneus.COMMON_SHREW1.68.gtf.gz',
'susScr3' => 'sus_scrofa/Sus_scrofa.Sscrofa10.2.68.gtf.gz',
'taeGut1' => 'taeniopygia_guttata/Taeniopygia_guttata.taeGut3.2.4.68.gtf.gz',
'fr2' => 'takifugu_rubripes/Takifugu_rubripes.FUGU4.68.gtf.gz',
'tarSyr1' => 'tarsius_syrichta/Tarsius_syrichta.tarSyr1.68.gtf.gz',
'tetNig2' => 'tetraodon_nigroviridis/Tetraodon_nigroviridis.TETRAODON8.68.gtf.gz',
'tupBel1' => 'tupaia_belangeri/Tupaia_belangeri.TREESHREW.68.gtf.gz',
'turTru1' => 'tursiops_truncatus/Tursiops_truncatus.turTru1.68.gtf.gz',
'vicPac1' => 'vicugna_pacos/Vicugna_pacos.vicPac1.68.gtf.gz',
'xenTro3' => 'xenopus_tropicalis/Xenopus_tropicalis.JGI_4.2.68.gtf.gz',
);

my %ensGeneFtpPeptideFileNames_68 = (
'ailMel1' => 'ailuropoda_melanoleuca/pep/Ailuropoda_melanoleuca.ailMel1.68.pep.all.fa.gz',
'anoCar2' => 'anolis_carolinensis/pep/Anolis_carolinensis.AnoCar2.0.68.pep.all.fa.gz',
'bosTau6' => 'bos_taurus/pep/Bos_taurus.UMD3.1.68.pep.all.fa.gz',
'ce11' => 'caenorhabditis_elegans/pep/Caenorhabditis_elegans.WBcel215.68.pep.all.fa.gz',
'calJac3' => 'callithrix_jacchus/pep/Callithrix_jacchus.C_jacchus3.2.1.68.pep.all.fa.gz',
'canFam3' => 'canis_familiaris/pep/Canis_familiaris.CanFam3.1.68.pep.all.fa.gz',
'cavPor3' => 'cavia_porcellus/pep/Cavia_porcellus.cavPor3.68.pep.all.fa.gz',
'choHof1' => 'choloepus_hoffmanni/pep/Choloepus_hoffmanni.choHof1.68.pep.all.fa.gz',
'ci3' => 'ciona_intestinalis/pep/Ciona_intestinalis.KH.68.pep.all.fa.gz',
'cioSav2' => 'ciona_savignyi/pep/Ciona_savignyi.CSAV2.0.68.pep.all.fa.gz',
'danRer7' => 'danio_rerio/pep/Danio_rerio.Zv9.68.pep.all.fa.gz',
'dasNov2' => 'dasypus_novemcinctus/pep/Dasypus_novemcinctus.dasNov2.68.pep.all.fa.gz',
'dipOrd1' => 'dipodomys_ordii/pep/Dipodomys_ordii.dipOrd1.68.pep.all.fa.gz',
'dm3' => 'drosophila_melanogaster/pep/Drosophila_melanogaster.BDGP5.68.pep.all.fa.gz',
'echTel1' => 'echinops_telfairi/pep/Echinops_telfairi.TENREC.68.pep.all.fa.gz',
'equCab2' => 'equus_caballus/pep/Equus_caballus.EquCab2.68.pep.all.fa.gz',
'eriEur1' => 'erinaceus_europaeus/pep/Erinaceus_europaeus.HEDGEHOG.68.pep.all.fa.gz',
'felCat3' => 'felis_catus/pep/Felis_catus.CAT.68.pep.all.fa.gz',
'gadMor1' => 'gadus_morhua/pep/Gadus_morhua.gadMor1.68.pep.all.fa.gz',
'galGal3' => 'gallus_gallus/pep/Gallus_gallus.WASHUC2.68.pep.all.fa.gz',
'gasAcu1' => 'gasterosteus_aculeatus/pep/Gasterosteus_aculeatus.BROADS1.68.pep.all.fa.gz',
'gorGor3' => 'gorilla_gorilla/pep/Gorilla_gorilla.gorGor3.1.68.pep.all.fa.gz',
'hg19' => 'homo_sapiens/pep/Homo_sapiens.GRCh37.68.pep.all.fa.gz',
'speTri2' => 'ictidomys_tridecemlineatus/pep/Ictidomys_tridecemlineatus.spetri2.68.pep.all.fa.gz',
'latCha1' => 'latimeria_chalumnae/pep/Latimeria_chalumnae.LatCha1.68.pep.all.fa.gz',
'loxAfr3' => 'loxodonta_africana/pep/Loxodonta_africana.loxAfr3.68.pep.all.fa.gz',
'rheMac2' => 'macaca_mulatta/pep/Macaca_mulatta.MMUL_1.68.pep.all.fa.gz',
'macEug1' => 'macropus_eugenii/pep/Macropus_eugenii.Meug_1.0.68.pep.all.fa.gz',
'melGal1' => 'meleagris_gallopavo/pep/Meleagris_gallopavo.UMD2.68.pep.all.fa.gz',
'micMur1' => 'microcebus_murinus/pep/Microcebus_murinus.micMur1.68.pep.all.fa.gz',
'monDom5' => 'monodelphis_domestica/pep/Monodelphis_domestica.BROADO5.68.pep.all.fa.gz',
'mm10' => 'mus_musculus/pep/Mus_musculus.GRCm38.68.pep.all.fa.gz',
'myoLuc2' => 'myotis_lucifugus/pep/Myotis_lucifugus.Myoluc2.0.68.pep.all.fa.gz',
'nomLeu1' => 'nomascus_leucogenys/pep/Nomascus_leucogenys.Nleu1.0.68.pep.all.fa.gz',
'ochPri2' => 'ochotona_princeps/pep/Ochotona_princeps.pika.68.pep.all.fa.gz',
'oreNil1' => 'oreochromis_niloticus/pep/Oreochromis_niloticus.Orenil1.0.68.pep.all.fa.gz',
'ornAna1' => 'ornithorhynchus_anatinus/pep/Ornithorhynchus_anatinus.OANA5.68.pep.all.fa.gz',
'oryCun2' => 'oryctolagus_cuniculus/pep/Oryctolagus_cuniculus.oryCun2.68.pep.all.fa.gz',
'oryLat2' => 'oryzias_latipes/pep/Oryzias_latipes.MEDAKA1.68.pep.all.fa.gz',
'otoGar3' => 'otolemur_garnettii/pep/Otolemur_garnettii.OtoGar3.68.pep.all.fa.gz',
'panTro4' => 'pan_troglodytes/pep/Pan_troglodytes.CHIMP2.1.4.68.pep.all.fa.gz',
'pelSin1' => 'pelodiscus_sinensis/pep/Pelodiscus_sinensis.PelSin_1.0.68.pep.all.fa.gz',
'petMar2' => 'petromyzon_marinus/pep/Petromyzon_marinus.Pmarinus_7.0.68.pep.all.fa.gz',
'ponAbe2' => 'pongo_abelii/pep/Pongo_abelii.PPYG2.68.pep.all.fa.gz',
'proCap1' => 'procavia_capensis/pep/Procavia_capensis.proCap1.68.pep.all.fa.gz',
'pteVam1' => 'pteropus_vampyrus/pep/Pteropus_vampyrus.pteVam1.68.pep.all.fa.gz',
'rn4' => 'rattus_norvegicus/pep/Rattus_norvegicus.RGSC3.4.68.pep.all.fa.gz',
'sacCer3' => 'saccharomyces_cerevisiae/pep/Saccharomyces_cerevisiae.EF4.68.pep.all.fa.gz',
'sarHar1' => 'sarcophilus_harrisii/pep/Sarcophilus_harrisii.DEVIL7.0.68.pep.all.fa.gz',
'sorAra1' => 'sorex_araneus/pep/Sorex_araneus.COMMON_SHREW1.68.pep.all.fa.gz',
'susScr3' => 'sus_scrofa/pep/Sus_scrofa.Sscrofa10.2.68.pep.all.fa.gz',
'taeGut1' => 'taeniopygia_guttata/pep/Taeniopygia_guttata.taeGut3.2.4.68.pep.all.fa.gz',
'fr2' => 'takifugu_rubripes/pep/Takifugu_rubripes.FUGU4.68.pep.all.fa.gz',
'tarSyr1' => 'tarsius_syrichta/pep/Tarsius_syrichta.tarSyr1.68.pep.all.fa.gz',
'tetNig2' => 'tetraodon_nigroviridis/pep/Tetraodon_nigroviridis.TETRAODON8.68.pep.all.fa.gz',
'tupBel1' => 'tupaia_belangeri/pep/Tupaia_belangeri.TREESHREW.68.pep.all.fa.gz',
'turTru1' => 'tursiops_truncatus/pep/Tursiops_truncatus.turTru1.68.pep.all.fa.gz',
'vicPac1' => 'vicugna_pacos/pep/Vicugna_pacos.vicPac1.68.pep.all.fa.gz',
'xenTro3' => 'xenopus_tropicalis/pep/Xenopus_tropicalis.JGI_4.2.68.pep.all.fa.gz',
);

my %ensGeneFtpMySqlFileNames_68 = (
'ailMel1' => 'ailuropoda_melanoleuca_core_68_1',
'anoCar2' => 'anolis_carolinensis_core_68_2',
'bosTau6' => 'bos_taurus_core_68_31',
'ce11' => 'caenorhabditis_elegans_core_68_230',
'calJac3' => 'callithrix_jacchus_core_68_321',
'canFam3' => 'canis_familiaris_core_68_31',
'cavPor3' => 'cavia_porcellus_core_68_3',
'choHof1' => 'choloepus_hoffmanni_core_68_1',
'ci3' => 'ciona_intestinalis_core_68_3',
'cioSav2' => 'ciona_savignyi_core_68_2',
'danRer7' => 'danio_rerio_core_68_9',
'dasNov2' => 'dasypus_novemcinctus_core_68_2',
'dipOrd1' => 'dipodomys_ordii_core_68_1',
'dm3' => 'drosophila_melanogaster_core_68_539',
'echTel1' => 'echinops_telfairi_core_68_1',
'equCab2' => 'equus_caballus_core_68_2',
'eriEur1' => 'erinaceus_europaeus_core_68_1',
'felCat3' => 'felis_catus_core_68_1',
'gadMor1' => 'gadus_morhua_core_68_1',
'galGal3' => 'gallus_gallus_core_68_2',
'gasAcu1' => 'gasterosteus_aculeatus_core_68_1',
'gorGor3' => 'gorilla_gorilla_core_68_31',
'hg19' => 'homo_sapiens_core_68_37',
'speTri2' => 'ictidomys_tridecemlineatus_core_68_2',
'latCha1' => 'latimeria_chalumnae_core_68_1',
'loxAfr3' => 'loxodonta_africana_core_68_3',
'rheMac2' => 'macaca_mulatta_core_68_10',
'macEug1' => 'macropus_eugenii_core_68_1',
'melGal1' => 'meleagris_gallopavo_core_68_21',
'micMur1' => 'microcebus_murinus_core_68_1',
'monDom5' => 'monodelphis_domestica_core_68_5',
'mm10' => 'mus_musculus_core_68_38',
'myoLuc2' => 'myotis_lucifugus_core_68_2',
'nomLeu1' => 'nomascus_leucogenys_core_68_1',
'ochPri2' => 'ochotona_princeps_core_68_1',
'oreNil1' => 'oreochromis_niloticus_core_68_1',
'ornAna1' => 'ornithorhynchus_anatinus_core_68_1',
'oryCun2' => 'oryctolagus_cuniculus_core_68_3',
'oryLat2' => 'oryzias_latipes_core_68_1',
'otoGar3' => 'otolemur_garnettii_core_68_3',
'panTro4' => 'pan_troglodytes_core_68_214',
'pelSin1' => 'pelodiscus_sinensis_core_68_1',
'petMar2' => 'petromyzon_marinus_core_68_7',
'ponAbe2' => 'pongo_abelii_core_68_1',
'proCap1' => 'procavia_capensis_core_68_1',
'pteVam1' => 'pteropus_vampyrus_core_68_1',
'rn4' => 'rattus_norvegicus_core_68_34',
'sacCer3' => 'saccharomyces_cerevisiae_core_68_4',
'sarHar1' => 'sarcophilus_harrisii_core_68_7',
'sorAra1' => 'sorex_araneus_core_68_1',
'susScr3' => 'sus_scrofa_core_68_102',
'taeGut1' => 'taeniopygia_guttata_core_68_1',
'fr2' => 'takifugu_rubripes_core_68_4',
'tarSyr1' => 'tarsius_syrichta_core_68_1',
'tetNig2' => 'tetraodon_nigroviridis_core_68_8',
'tupBel1' => 'tupaia_belangeri_core_68_1',
'turTru1' => 'tursiops_truncatus_core_68_1',
'vicPac1' => 'vicugna_pacos_core_68_1',
'xenTro3' => 'xenopus_tropicalis_core_68_42',
);

my %ensGeneGtfFileNames_69 = (
'ailMel1' => 'ailuropoda_melanoleuca/Ailuropoda_melanoleuca.ailMel1.69.gtf.gz',
'anoCar2' => 'anolis_carolinensis/Anolis_carolinensis.AnoCar2.0.69.gtf.gz',
'bosTau6' => 'bos_taurus/Bos_taurus.UMD3.1.69.gtf.gz',
'ce11' => 'caenorhabditis_elegans/Caenorhabditis_elegans.WBcel215.69.gtf.gz',
'calJac3' => 'callithrix_jacchus/Callithrix_jacchus.C_jacchus3.2.1.69.gtf.gz',
'canFam3' => 'canis_familiaris/Canis_familiaris.CanFam3.1.69.gtf.gz',
'cavPor3' => 'cavia_porcellus/Cavia_porcellus.cavPor3.69.gtf.gz',
'choHof1' => 'choloepus_hoffmanni/Choloepus_hoffmanni.choHof1.69.gtf.gz',
'ci3' => 'ciona_intestinalis/Ciona_intestinalis.KH.69.gtf.gz',
'cioSav2' => 'ciona_savignyi/Ciona_savignyi.CSAV2.0.69.gtf.gz',
'danRer7' => 'danio_rerio/Danio_rerio.Zv9.69.gtf.gz',
'dasNov2' => 'dasypus_novemcinctus/Dasypus_novemcinctus.dasNov2.69.gtf.gz',
'dipOrd1' => 'dipodomys_ordii/Dipodomys_ordii.dipOrd1.69.gtf.gz',
'dm3' => 'drosophila_melanogaster/Drosophila_melanogaster.BDGP5.69.gtf.gz',
'echTel1' => 'echinops_telfairi/Echinops_telfairi.TENREC.69.gtf.gz',
'equCab2' => 'equus_caballus/Equus_caballus.EquCab2.69.gtf.gz',
'eriEur1' => 'erinaceus_europaeus/Erinaceus_europaeus.HEDGEHOG.69.gtf.gz',
'felCat3' => 'felis_catus/Felis_catus.CAT.69.gtf.gz',
'gadMor1' => 'gadus_morhua/Gadus_morhua.gadMor1.69.gtf.gz',
'galGal3' => 'gallus_gallus/Gallus_gallus.WASHUC2.69.gtf.gz',
'gasAcu1' => 'gasterosteus_aculeatus/Gasterosteus_aculeatus.BROADS1.69.gtf.gz',
'gorGor3' => 'gorilla_gorilla/Gorilla_gorilla.gorGor3.1.69.gtf.gz',
'hg19' => 'homo_sapiens/Homo_sapiens.GRCh37.69.gtf.gz',
'speTri2' => 'ictidomys_tridecemlineatus/Ictidomys_tridecemlineatus.spetri2.69.gtf.gz',
'latCha1' => 'latimeria_chalumnae/Latimeria_chalumnae.LatCha1.69.gtf.gz',
'loxAfr3' => 'loxodonta_africana/Loxodonta_africana.loxAfr3.69.gtf.gz',
'rheMac2' => 'macaca_mulatta/Macaca_mulatta.MMUL_1.69.gtf.gz',
'macEug1' => 'macropus_eugenii/Macropus_eugenii.Meug_1.0.69.gtf.gz',
'melGal1' => 'meleagris_gallopavo/Meleagris_gallopavo.UMD2.69.gtf.gz',
'micMur1' => 'microcebus_murinus/Microcebus_murinus.micMur1.69.gtf.gz',
'monDom5' => 'monodelphis_domestica/Monodelphis_domestica.BROADO5.69.gtf.gz',
'mm10' => 'mus_musculus/Mus_musculus.GRCm38.69.gtf.gz',
'musFur1' => 'mustela_putorius_furo/Mustela_putorius_furo.MusPutFur1.0.69.gtf.gz',
'myoLuc2' => 'myotis_lucifugus/Myotis_lucifugus.Myoluc2.0.69.gtf.gz',
'nomLeu1' => 'nomascus_leucogenys/Nomascus_leucogenys.Nleu1.0.69.gtf.gz',
'ochPri2' => 'ochotona_princeps/Ochotona_princeps.pika.69.gtf.gz',
'oreNil1' => 'oreochromis_niloticus/Oreochromis_niloticus.Orenil1.0.69.gtf.gz',
'ornAna1' => 'ornithorhynchus_anatinus/Ornithorhynchus_anatinus.OANA5.69.gtf.gz',
'oryCun2' => 'oryctolagus_cuniculus/Oryctolagus_cuniculus.oryCun2.69.gtf.gz',
'oryLat2' => 'oryzias_latipes/Oryzias_latipes.MEDAKA1.69.gtf.gz',
'otoGar3' => 'otolemur_garnettii/Otolemur_garnettii.OtoGar3.69.gtf.gz',
'panTro4' => 'pan_troglodytes/Pan_troglodytes.CHIMP2.1.4.69.gtf.gz',
'pelSin1' => 'pelodiscus_sinensis/Pelodiscus_sinensis.PelSin_1.0.69.gtf.gz',
'petMar2' => 'petromyzon_marinus/Petromyzon_marinus.Pmarinus_7.0.69.gtf.gz',
'ponAbe2' => 'pongo_abelii/Pongo_abelii.PPYG2.69.gtf.gz',
'proCap1' => 'procavia_capensis/Procavia_capensis.proCap1.69.gtf.gz',
'pteVam1' => 'pteropus_vampyrus/Pteropus_vampyrus.pteVam1.69.gtf.gz',
'rn4' => 'rattus_norvegicus/Rattus_norvegicus.RGSC3.4.69.gtf.gz',
'sacCer3' => 'saccharomyces_cerevisiae/Saccharomyces_cerevisiae.EF4.69.gtf.gz',
'sarHar1' => 'sarcophilus_harrisii/Sarcophilus_harrisii.DEVIL7.0.69.gtf.gz',
'sorAra1' => 'sorex_araneus/Sorex_araneus.COMMON_SHREW1.69.gtf.gz',
'susScr3' => 'sus_scrofa/Sus_scrofa.Sscrofa10.2.69.gtf.gz',
'taeGut1' => 'taeniopygia_guttata/Taeniopygia_guttata.taeGut3.2.4.69.gtf.gz',
'fr2' => 'takifugu_rubripes/Takifugu_rubripes.FUGU4.69.gtf.gz',
'tarSyr1' => 'tarsius_syrichta/Tarsius_syrichta.tarSyr1.69.gtf.gz',
'tetNig2' => 'tetraodon_nigroviridis/Tetraodon_nigroviridis.TETRAODON8.69.gtf.gz',
'tupBel1' => 'tupaia_belangeri/Tupaia_belangeri.TREESHREW.69.gtf.gz',
'turTru1' => 'tursiops_truncatus/Tursiops_truncatus.turTru1.69.gtf.gz',
'vicPac1' => 'vicugna_pacos/Vicugna_pacos.vicPac1.69.gtf.gz',
'xenTro3' => 'xenopus_tropicalis/Xenopus_tropicalis.JGI_4.2.69.gtf.gz',
'xipMac1' => 'xiphophorus_maculatus/Xiphophorus_maculatus.Xipmac4.4.2.69.gtf.gz',
);


my %ensGeneFtpPeptideFileNames_69 = (
'ailMel1' => 'ailuropoda_melanoleuca/pep/Ailuropoda_melanoleuca.ailMel1.69.pep.all.fa.gz',
'anoCar2' => 'anolis_carolinensis/pep/Anolis_carolinensis.AnoCar2.0.69.pep.all.fa.gz',
'bosTau6' => 'bos_taurus/pep/Bos_taurus.UMD3.1.69.pep.all.fa.gz',
'ce11' => 'caenorhabditis_elegans/pep/Caenorhabditis_elegans.WBcel215.69.pep.all.fa.gz',
'calJac3' => 'callithrix_jacchus/pep/Callithrix_jacchus.C_jacchus3.2.1.69.pep.all.fa.gz',
'canFam3' => 'canis_familiaris/pep/Canis_familiaris.CanFam3.1.69.pep.all.fa.gz',
'cavPor3' => 'cavia_porcellus/pep/Cavia_porcellus.cavPor3.69.pep.all.fa.gz',
'choHof1' => 'choloepus_hoffmanni/pep/Choloepus_hoffmanni.choHof1.69.pep.all.fa.gz',
'ci3' => 'ciona_intestinalis/pep/Ciona_intestinalis.KH.69.pep.all.fa.gz',
'cioSav2' => 'ciona_savignyi/pep/Ciona_savignyi.CSAV2.0.69.pep.all.fa.gz',
'danRer7' => 'danio_rerio/pep/Danio_rerio.Zv9.69.pep.all.fa.gz',
'dasNov2' => 'dasypus_novemcinctus/pep/Dasypus_novemcinctus.dasNov2.69.pep.all.fa.gz',
'dipOrd1' => 'dipodomys_ordii/pep/Dipodomys_ordii.dipOrd1.69.pep.all.fa.gz',
'dm3' => 'drosophila_melanogaster/pep/Drosophila_melanogaster.BDGP5.69.pep.all.fa.gz',
'echTel1' => 'echinops_telfairi/pep/Echinops_telfairi.TENREC.69.pep.all.fa.gz',
'equCab2' => 'equus_caballus/pep/Equus_caballus.EquCab2.69.pep.all.fa.gz',
'eriEur1' => 'erinaceus_europaeus/pep/Erinaceus_europaeus.HEDGEHOG.69.pep.all.fa.gz',
'felCat3' => 'felis_catus/pep/Felis_catus.CAT.69.pep.all.fa.gz',
'gadMor1' => 'gadus_morhua/pep/Gadus_morhua.gadMor1.69.pep.all.fa.gz',
'galGal3' => 'gallus_gallus/pep/Gallus_gallus.WASHUC2.69.pep.all.fa.gz',
'gasAcu1' => 'gasterosteus_aculeatus/pep/Gasterosteus_aculeatus.BROADS1.69.pep.all.fa.gz',
'gorGor3' => 'gorilla_gorilla/pep/Gorilla_gorilla.gorGor3.1.69.pep.all.fa.gz',
'hg19' => 'homo_sapiens/pep/Homo_sapiens.GRCh37.69.pep.all.fa.gz',
'speTri2' => 'ictidomys_tridecemlineatus/pep/Ictidomys_tridecemlineatus.spetri2.69.pep.all.fa.gz',
'latCha1' => 'latimeria_chalumnae/pep/Latimeria_chalumnae.LatCha1.69.pep.all.fa.gz',
'loxAfr3' => 'loxodonta_africana/pep/Loxodonta_africana.loxAfr3.69.pep.all.fa.gz',
'rheMac2' => 'macaca_mulatta/pep/Macaca_mulatta.MMUL_1.69.pep.all.fa.gz',
'macEug1' => 'macropus_eugenii/pep/Macropus_eugenii.Meug_1.0.69.pep.all.fa.gz',
'melGal1' => 'meleagris_gallopavo/pep/Meleagris_gallopavo.UMD2.69.pep.all.fa.gz',
'micMur1' => 'microcebus_murinus/pep/Microcebus_murinus.micMur1.69.pep.all.fa.gz',
'monDom5' => 'monodelphis_domestica/pep/Monodelphis_domestica.BROADO5.69.pep.all.fa.gz',
'mm10' => 'mus_musculus/pep/Mus_musculus.GRCm38.69.pep.all.fa.gz',
'musFur1' => 'mustela_putorius_furo/pep/Mustela_putorius_furo.MusPutFur1.0.69.pep.all.fa.gz',
'myoLuc2' => 'myotis_lucifugus/pep/Myotis_lucifugus.Myoluc2.0.69.pep.all.fa.gz',
'nomLeu1' => 'nomascus_leucogenys/pep/Nomascus_leucogenys.Nleu1.0.69.pep.all.fa.gz',
'ochPri2' => 'ochotona_princeps/pep/Ochotona_princeps.pika.69.pep.all.fa.gz',
'oreNil1' => 'oreochromis_niloticus/pep/Oreochromis_niloticus.Orenil1.0.69.pep.all.fa.gz',
'ornAna1' => 'ornithorhynchus_anatinus/pep/Ornithorhynchus_anatinus.OANA5.69.pep.all.fa.gz',
'oryCun2' => 'oryctolagus_cuniculus/pep/Oryctolagus_cuniculus.oryCun2.69.pep.all.fa.gz',
'oryLat2' => 'oryzias_latipes/pep/Oryzias_latipes.MEDAKA1.69.pep.all.fa.gz',
'otoGar3' => 'otolemur_garnettii/pep/Otolemur_garnettii.OtoGar3.69.pep.all.fa.gz',
'panTro4' => 'pan_troglodytes/pep/Pan_troglodytes.CHIMP2.1.4.69.pep.all.fa.gz',
'pelSin1' => 'pelodiscus_sinensis/pep/Pelodiscus_sinensis.PelSin_1.0.69.pep.all.fa.gz',
'petMar2' => 'petromyzon_marinus/pep/Petromyzon_marinus.Pmarinus_7.0.69.pep.all.fa.gz',
'ponAbe2' => 'pongo_abelii/pep/Pongo_abelii.PPYG2.69.pep.all.fa.gz',
'proCap1' => 'procavia_capensis/pep/Procavia_capensis.proCap1.69.pep.all.fa.gz',
'pteVam1' => 'pteropus_vampyrus/pep/Pteropus_vampyrus.pteVam1.69.pep.all.fa.gz',
'rn4' => 'rattus_norvegicus/pep/Rattus_norvegicus.RGSC3.4.69.pep.all.fa.gz',
'sacCer3' => 'saccharomyces_cerevisiae/pep/Saccharomyces_cerevisiae.EF4.69.pep.all.fa.gz',
'sarHar1' => 'sarcophilus_harrisii/pep/Sarcophilus_harrisii.DEVIL7.0.69.pep.all.fa.gz',
'sorAra1' => 'sorex_araneus/pep/Sorex_araneus.COMMON_SHREW1.69.pep.all.fa.gz',
'susScr3' => 'sus_scrofa/pep/Sus_scrofa.Sscrofa10.2.69.pep.all.fa.gz',
'taeGut1' => 'taeniopygia_guttata/pep/Taeniopygia_guttata.taeGut3.2.4.69.pep.all.fa.gz',
'fr2' => 'takifugu_rubripes/pep/Takifugu_rubripes.FUGU4.69.pep.all.fa.gz',
'tarSyr1' => 'tarsius_syrichta/pep/Tarsius_syrichta.tarSyr1.69.pep.all.fa.gz',
'tetNig2' => 'tetraodon_nigroviridis/pep/Tetraodon_nigroviridis.TETRAODON8.69.pep.all.fa.gz',
'tupBel1' => 'tupaia_belangeri/pep/Tupaia_belangeri.TREESHREW.69.pep.all.fa.gz',
'turTru1' => 'tursiops_truncatus/pep/Tursiops_truncatus.turTru1.69.pep.all.fa.gz',
'vicPac1' => 'vicugna_pacos/pep/Vicugna_pacos.vicPac1.69.pep.all.fa.gz',
'xenTro3' => 'xenopus_tropicalis/pep/Xenopus_tropicalis.JGI_4.2.69.pep.all.fa.gz',
'xipMac1' => 'xiphophorus_maculatus/pep/Xiphophorus_maculatus.Xipmac4.4.2.69.pep.all.fa.gz',
);

my %ensGeneFtpMySqlFileNames_69 = (
'ailMel1' => 'ailuropoda_melanoleuca_core_69_1',
'anoCar2' => 'anolis_carolinensis_core_69_2',
'bosTau6' => 'bos_taurus_core_69_31',
'ce11' => 'caenorhabditis_elegans_core_69_230',
'calJac3' => 'callithrix_jacchus_core_69_321',
'canFam3' => 'canis_familiaris_core_69_31',
'cavPor3' => 'cavia_porcellus_core_69_3',
'choHof1' => 'choloepus_hoffmanni_core_69_1',
'ci3' => 'ciona_intestinalis_core_69_3',
'cioSav2' => 'ciona_savignyi_core_69_2',
'danRer7' => 'danio_rerio_core_69_9',
'dasNov2' => 'dasypus_novemcinctus_core_69_2',
'dipOrd1' => 'dipodomys_ordii_core_69_1',
'dm3' => 'drosophila_melanogaster_core_69_539',
'echTel1' => 'echinops_telfairi_core_69_1',
'equCab2' => 'equus_caballus_core_69_2',
'eriEur1' => 'erinaceus_europaeus_core_69_1',
'felCat3' => 'felis_catus_core_69_1',
'gadMor1' => 'gadus_morhua_core_69_1',
'galGal3' => 'gallus_gallus_core_69_2',
'gasAcu1' => 'gasterosteus_aculeatus_core_69_1',
'gorGor3' => 'gorilla_gorilla_core_69_31',
'hg19' => 'homo_sapiens_core_69_37',
'speTri2' => 'ictidomys_tridecemlineatus_core_69_2',
'latCha1' => 'latimeria_chalumnae_core_69_1',
'loxAfr3' => 'loxodonta_africana_core_69_3',
'rheMac2' => 'macaca_mulatta_core_69_10',
'macEug1' => 'macropus_eugenii_core_69_1',
'melGal1' => 'meleagris_gallopavo_core_69_21',
'micMur1' => 'microcebus_murinus_core_69_1',
'monDom5' => 'monodelphis_domestica_core_69_5',
'mm10' => 'mus_musculus_core_69_38',
'musFur1' => 'mustela_putorius_furo_core_69_1',
'myoLuc2' => 'myotis_lucifugus_core_69_2',
'nomLeu1' => 'nomascus_leucogenys_core_69_1',
'ochPri2' => 'ochotona_princeps_core_69_1',
'oreNil1' => 'oreochromis_niloticus_core_69_1',
'ornAna1' => 'ornithorhynchus_anatinus_core_69_1',
'oryCun2' => 'oryctolagus_cuniculus_core_69_3',
'oryLat2' => 'oryzias_latipes_core_69_1',
'otoGar3' => 'otolemur_garnettii_core_69_3',
'panTro4' => 'pan_troglodytes_core_69_214',
'pelSin1' => 'pelodiscus_sinensis_core_69_1',
'petMar2' => 'petromyzon_marinus_core_69_7',
'ponAbe2' => 'pongo_abelii_core_69_1',
'proCap1' => 'procavia_capensis_core_69_1',
'pteVam1' => 'pteropus_vampyrus_core_69_1',
'rn4' => 'rattus_norvegicus_core_69_34',
'sacCer3' => 'saccharomyces_cerevisiae_core_69_4',
'sarHar1' => 'sarcophilus_harrisii_core_69_7',
'sorAra1' => 'sorex_araneus_core_69_1',
'susScr3' => 'sus_scrofa_core_69_102',
'taeGut1' => 'taeniopygia_guttata_core_69_1',
'fr2' => 'takifugu_rubripes_core_69_4',
'tarSyr1' => 'tarsius_syrichta_core_69_1',
'tetNig2' => 'tetraodon_nigroviridis_core_69_8',
'tupBel1' => 'tupaia_belangeri_core_69_1',
'turTru1' => 'tursiops_truncatus_core_69_1',
'vicPac1' => 'vicugna_pacos_core_69_1',
'xenTro3' => 'xenopus_tropicalis_core_69_42',
'xipMac1' => 'xiphophorus_maculatus_core_69_1',
);


my %ensGeneGtfFileNames_70 = (
'ailMel1' => 'ailuropoda_melanoleuca/Ailuropoda_melanoleuca.ailMel1.70.gtf.gz',
'anoCar2' => 'anolis_carolinensis/Anolis_carolinensis.AnoCar2.0.70.gtf.gz',
'bosTau6' => 'bos_taurus/Bos_taurus.UMD3.1.70.gtf.gz',
'ce11' => 'caenorhabditis_elegans/Caenorhabditis_elegans.WBcel215.70.gtf.gz',
'calJac3' => 'callithrix_jacchus/Callithrix_jacchus.C_jacchus3.2.1.70.gtf.gz',
'canFam3' => 'canis_familiaris/Canis_familiaris.CanFam3.1.70.gtf.gz',
'cavPor3' => 'cavia_porcellus/Cavia_porcellus.cavPor3.70.gtf.gz',
'choHof1' => 'choloepus_hoffmanni/Choloepus_hoffmanni.choHof1.70.gtf.gz',
'ci3' => 'ciona_intestinalis/Ciona_intestinalis.KH.70.gtf.gz',
'cioSav2' => 'ciona_savignyi/Ciona_savignyi.CSAV2.0.70.gtf.gz',
'danRer7' => 'danio_rerio/Danio_rerio.Zv9.70.gtf.gz',
'dasNov2' => 'dasypus_novemcinctus/Dasypus_novemcinctus.dasNov2.70.gtf.gz',
'dipOrd1' => 'dipodomys_ordii/Dipodomys_ordii.dipOrd1.70.gtf.gz',
'dm3' => 'drosophila_melanogaster/Drosophila_melanogaster.BDGP5.70.gtf.gz',
'echTel1' => 'echinops_telfairi/Echinops_telfairi.TENREC.70.gtf.gz',
'equCab2' => 'equus_caballus/Equus_caballus.EquCab2.70.gtf.gz',
'eriEur1' => 'erinaceus_europaeus/Erinaceus_europaeus.HEDGEHOG.70.gtf.gz',
'felCat5' => 'felis_catus/Felis_catus.Felis_catus_6.2.70.gtf.gz',
'gadMor1' => 'gadus_morhua/Gadus_morhua.gadMor1.70.gtf.gz',
'galGal3' => 'gallus_gallus/Gallus_gallus.WASHUC2.70.gtf.gz',
'gasAcu1' => 'gasterosteus_aculeatus/Gasterosteus_aculeatus.BROADS1.70.gtf.gz',
'gorGor3' => 'gorilla_gorilla/Gorilla_gorilla.gorGor3.1.70.gtf.gz',
'hg19' => 'homo_sapiens/Homo_sapiens.GRCh37.70.gtf.gz',
'speTri2' => 'ictidomys_tridecemlineatus/Ictidomys_tridecemlineatus.spetri2.70.gtf.gz',
'latCha1' => 'latimeria_chalumnae/Latimeria_chalumnae.LatCha1.70.gtf.gz',
'loxAfr3' => 'loxodonta_africana/Loxodonta_africana.loxAfr3.70.gtf.gz',
'rheMac2' => 'macaca_mulatta/Macaca_mulatta.MMUL_1.70.gtf.gz',
'macEug1' => 'macropus_eugenii/Macropus_eugenii.Meug_1.0.70.gtf.gz',
'melGal1' => 'meleagris_gallopavo/Meleagris_gallopavo.UMD2.70.gtf.gz',
'micMur1' => 'microcebus_murinus/Microcebus_murinus.micMur1.70.gtf.gz',
'monDom5' => 'monodelphis_domestica/Monodelphis_domestica.BROADO5.70.gtf.gz',
'mm10' => 'mus_musculus/Mus_musculus.GRCm38.70.gtf.gz',
'musFur1' => 'mustela_putorius_furo/Mustela_putorius_furo.MusPutFur1.0.70.gtf.gz',
'myoLuc2' => 'myotis_lucifugus/Myotis_lucifugus.Myoluc2.0.70.gtf.gz',
'nomLeu1' => 'nomascus_leucogenys/Nomascus_leucogenys.Nleu1.0.70.gtf.gz',
'ochPri2' => 'ochotona_princeps/Ochotona_princeps.pika.70.gtf.gz',
'oreNil1' => 'oreochromis_niloticus/Oreochromis_niloticus.Orenil1.0.70.gtf.gz',
'ornAna1' => 'ornithorhynchus_anatinus/Ornithorhynchus_anatinus.OANA5.70.gtf.gz',
'oryCun2' => 'oryctolagus_cuniculus/Oryctolagus_cuniculus.oryCun2.70.gtf.gz',
'oryLat2' => 'oryzias_latipes/Oryzias_latipes.MEDAKA1.70.gtf.gz',
'otoGar3' => 'otolemur_garnettii/Otolemur_garnettii.OtoGar3.70.gtf.gz',
'panTro4' => 'pan_troglodytes/Pan_troglodytes.CHIMP2.1.4.70.gtf.gz',
'pelSin1' => 'pelodiscus_sinensis/Pelodiscus_sinensis.PelSin_1.0.70.gtf.gz',
'petMar2' => 'petromyzon_marinus/Petromyzon_marinus.Pmarinus_7.0.70.gtf.gz',
'ponAbe2' => 'pongo_abelii/Pongo_abelii.PPYG2.70.gtf.gz',
'proCap1' => 'procavia_capensis/Procavia_capensis.proCap1.70.gtf.gz',
'pteVam1' => 'pteropus_vampyrus/Pteropus_vampyrus.pteVam1.70.gtf.gz',
'rn5' => 'rattus_norvegicus/Rattus_norvegicus.Rnor_5.0.70.gtf.gz',
'sacCer3' => 'saccharomyces_cerevisiae/Saccharomyces_cerevisiae.EF4.70.gtf.gz',
'sarHar1' => 'sarcophilus_harrisii/Sarcophilus_harrisii.DEVIL7.0.70.gtf.gz',
'sorAra1' => 'sorex_araneus/Sorex_araneus.COMMON_SHREW1.70.gtf.gz',
'susScr3' => 'sus_scrofa/Sus_scrofa.Sscrofa10.2.70.gtf.gz',
'taeGut1' => 'taeniopygia_guttata/Taeniopygia_guttata.taeGut3.2.4.70.gtf.gz',
'fr2' => 'takifugu_rubripes/Takifugu_rubripes.FUGU4.70.gtf.gz',
'tarSyr1' => 'tarsius_syrichta/Tarsius_syrichta.tarSyr1.70.gtf.gz',
'tetNig2' => 'tetraodon_nigroviridis/Tetraodon_nigroviridis.TETRAODON8.70.gtf.gz',
'tupBel1' => 'tupaia_belangeri/Tupaia_belangeri.TREESHREW.70.gtf.gz',
'turTru1' => 'tursiops_truncatus/Tursiops_truncatus.turTru1.70.gtf.gz',
'vicPac1' => 'vicugna_pacos/Vicugna_pacos.vicPac1.70.gtf.gz',
'xenTro3' => 'xenopus_tropicalis/Xenopus_tropicalis.JGI_4.2.70.gtf.gz',
'xipMac1' => 'xiphophorus_maculatus/Xiphophorus_maculatus.Xipmac4.4.2.70.gtf.gz',
);


my %ensGeneFtpPeptideFileNames_70 = (
'ailMel1' => 'ailuropoda_melanoleuca/pep/Ailuropoda_melanoleuca.ailMel1.70.pep.all.fa.gz',
'anoCar2' => 'anolis_carolinensis/pep/Anolis_carolinensis.AnoCar2.0.70.pep.all.fa.gz',
'bosTau6' => 'bos_taurus/pep/Bos_taurus.UMD3.1.70.pep.all.fa.gz',
'ce11' => 'caenorhabditis_elegans/pep/Caenorhabditis_elegans.WBcel215.70.pep.all.fa.gz',
'calJac3' => 'callithrix_jacchus/pep/Callithrix_jacchus.C_jacchus3.2.1.70.pep.all.fa.gz',
'canFam3' => 'canis_familiaris/pep/Canis_familiaris.CanFam3.1.70.pep.all.fa.gz',
'cavPor3' => 'cavia_porcellus/pep/Cavia_porcellus.cavPor3.70.pep.all.fa.gz',
'choHof1' => 'choloepus_hoffmanni/pep/Choloepus_hoffmanni.choHof1.70.pep.all.fa.gz',
'ci3' => 'ciona_intestinalis/pep/Ciona_intestinalis.KH.70.pep.all.fa.gz',
'cioSav2' => 'ciona_savignyi/pep/Ciona_savignyi.CSAV2.0.70.pep.all.fa.gz',
'danRer7' => 'danio_rerio/pep/Danio_rerio.Zv9.70.pep.all.fa.gz',
'dasNov2' => 'dasypus_novemcinctus/pep/Dasypus_novemcinctus.dasNov2.70.pep.all.fa.gz',
'dipOrd1' => 'dipodomys_ordii/pep/Dipodomys_ordii.dipOrd1.70.pep.all.fa.gz',
'dm3' => 'drosophila_melanogaster/pep/Drosophila_melanogaster.BDGP5.70.pep.all.fa.gz',
'echTel1' => 'echinops_telfairi/pep/Echinops_telfairi.TENREC.70.pep.all.fa.gz',
'equCab2' => 'equus_caballus/pep/Equus_caballus.EquCab2.70.pep.all.fa.gz',
'eriEur1' => 'erinaceus_europaeus/pep/Erinaceus_europaeus.HEDGEHOG.70.pep.all.fa.gz',
'felCat5' => 'felis_catus/pep/Felis_catus.Felis_catus_6.2.70.pep.all.fa.gz',
'gadMor1' => 'gadus_morhua/pep/Gadus_morhua.gadMor1.70.pep.all.fa.gz',
'galGal3' => 'gallus_gallus/pep/Gallus_gallus.WASHUC2.70.pep.all.fa.gz',
'gasAcu1' => 'gasterosteus_aculeatus/pep/Gasterosteus_aculeatus.BROADS1.70.pep.all.fa.gz',
'gorGor3' => 'gorilla_gorilla/pep/Gorilla_gorilla.gorGor3.1.70.pep.all.fa.gz',
'hg19' => 'homo_sapiens/pep/Homo_sapiens.GRCh37.70.pep.all.fa.gz',
'speTri2' => 'ictidomys_tridecemlineatus/pep/Ictidomys_tridecemlineatus.spetri2.70.pep.all.fa.gz',
'latCha1' => 'latimeria_chalumnae/pep/Latimeria_chalumnae.LatCha1.70.pep.all.fa.gz',
'loxAfr3' => 'loxodonta_africana/pep/Loxodonta_africana.loxAfr3.70.pep.all.fa.gz',
'rheMac2' => 'macaca_mulatta/pep/Macaca_mulatta.MMUL_1.70.pep.all.fa.gz',
'macEug1' => 'macropus_eugenii/pep/Macropus_eugenii.Meug_1.0.70.pep.all.fa.gz',
'melGal1' => 'meleagris_gallopavo/pep/Meleagris_gallopavo.UMD2.70.pep.all.fa.gz',
'micMur1' => 'microcebus_murinus/pep/Microcebus_murinus.micMur1.70.pep.all.fa.gz',
'monDom5' => 'monodelphis_domestica/pep/Monodelphis_domestica.BROADO5.70.pep.all.fa.gz',
'mm10' => 'mus_musculus/pep/Mus_musculus.GRCm38.70.pep.all.fa.gz',
'musFur1' => 'mustela_putorius_furo/pep/Mustela_putorius_furo.MusPutFur1.0.70.pep.all.fa.gz',
'myoLuc2' => 'myotis_lucifugus/pep/Myotis_lucifugus.Myoluc2.0.70.pep.all.fa.gz',
'nomLeu1' => 'nomascus_leucogenys/pep/Nomascus_leucogenys.Nleu1.0.70.pep.all.fa.gz',
'ochPri2' => 'ochotona_princeps/pep/Ochotona_princeps.pika.70.pep.all.fa.gz',
'oreNil1' => 'oreochromis_niloticus/pep/Oreochromis_niloticus.Orenil1.0.70.pep.all.fa.gz',
'ornAna1' => 'ornithorhynchus_anatinus/pep/Ornithorhynchus_anatinus.OANA5.70.pep.all.fa.gz',
'oryCun2' => 'oryctolagus_cuniculus/pep/Oryctolagus_cuniculus.oryCun2.70.pep.all.fa.gz',
'oryLat2' => 'oryzias_latipes/pep/Oryzias_latipes.MEDAKA1.70.pep.all.fa.gz',
'otoGar3' => 'otolemur_garnettii/pep/Otolemur_garnettii.OtoGar3.70.pep.all.fa.gz',
'panTro4' => 'pan_troglodytes/pep/Pan_troglodytes.CHIMP2.1.4.70.pep.all.fa.gz',
'pelSin1' => 'pelodiscus_sinensis/pep/Pelodiscus_sinensis.PelSin_1.0.70.pep.all.fa.gz',
'petMar2' => 'petromyzon_marinus/pep/Petromyzon_marinus.Pmarinus_7.0.70.pep.all.fa.gz',
'ponAbe2' => 'pongo_abelii/pep/Pongo_abelii.PPYG2.70.pep.all.fa.gz',
'proCap1' => 'procavia_capensis/pep/Procavia_capensis.proCap1.70.pep.all.fa.gz',
'pteVam1' => 'pteropus_vampyrus/pep/Pteropus_vampyrus.pteVam1.70.pep.all.fa.gz',
'rn5' => 'rattus_norvegicus/pep/Rattus_norvegicus.Rnor_5.0.70.pep.all.fa.gz',
'sacCer3' => 'saccharomyces_cerevisiae/pep/Saccharomyces_cerevisiae.EF4.70.pep.all.fa.gz',
'sarHar1' => 'sarcophilus_harrisii/pep/Sarcophilus_harrisii.DEVIL7.0.70.pep.all.fa.gz',
'sorAra1' => 'sorex_araneus/pep/Sorex_araneus.COMMON_SHREW1.70.pep.all.fa.gz',
'susScr3' => 'sus_scrofa/pep/Sus_scrofa.Sscrofa10.2.70.pep.all.fa.gz',
'taeGut1' => 'taeniopygia_guttata/pep/Taeniopygia_guttata.taeGut3.2.4.70.pep.all.fa.gz',
'fr2' => 'takifugu_rubripes/pep/Takifugu_rubripes.FUGU4.70.pep.all.fa.gz',
'tarSyr1' => 'tarsius_syrichta/pep/Tarsius_syrichta.tarSyr1.70.pep.all.fa.gz',
'tetNig2' => 'tetraodon_nigroviridis/pep/Tetraodon_nigroviridis.TETRAODON8.70.pep.all.fa.gz',
'tupBel1' => 'tupaia_belangeri/pep/Tupaia_belangeri.TREESHREW.70.pep.all.fa.gz',
'turTru1' => 'tursiops_truncatus/pep/Tursiops_truncatus.turTru1.70.pep.all.fa.gz',
'vicPac1' => 'vicugna_pacos/pep/Vicugna_pacos.vicPac1.70.pep.all.fa.gz',
'xenTro3' => 'xenopus_tropicalis/pep/Xenopus_tropicalis.JGI_4.2.70.pep.all.fa.gz',
'xipMac1' => 'xiphophorus_maculatus/pep/Xiphophorus_maculatus.Xipmac4.4.2.70.pep.all.fa.gz',
);


my %ensGeneFtpMySqlFileNames_70 = (
'ailMel1' => 'ailuropoda_melanoleuca_core_70_1',
'anoCar2' => 'anolis_carolinensis_core_70_2',
'bosTau6' => 'bos_taurus_core_70_31',
'ce11' => 'caenorhabditis_elegans_core_70_230',
'calJac3' => 'callithrix_jacchus_core_70_321',
'canFam3' => 'canis_familiaris_core_70_31',
'cavPor3' => 'cavia_porcellus_core_70_3',
'choHof1' => 'choloepus_hoffmanni_core_70_1',
'ci3' => 'ciona_intestinalis_core_70_3',
'cioSav2' => 'ciona_savignyi_core_70_2',
'danRer7' => 'danio_rerio_core_70_9',
'dasNov2' => 'dasypus_novemcinctus_core_70_2',
'dipOrd1' => 'dipodomys_ordii_core_70_1',
'dm3' => 'drosophila_melanogaster_core_70_546',
'echTel1' => 'echinops_telfairi_core_70_1',
'equCab2' => 'equus_caballus_core_70_2',
'eriEur1' => 'erinaceus_europaeus_core_70_1',
'felCat5' => 'felis_catus_core_70_62',
'gadMor1' => 'gadus_morhua_core_70_1',
'galGal3' => 'gallus_gallus_core_70_2',
'gasAcu1' => 'gasterosteus_aculeatus_core_70_1',
'gorGor3' => 'gorilla_gorilla_core_70_31',
'hg19' => 'homo_sapiens_core_70_37',
'speTri2' => 'ictidomys_tridecemlineatus_core_70_2',
'latCha1' => 'latimeria_chalumnae_core_70_1',
'loxAfr3' => 'loxodonta_africana_core_70_3',
'rheMac2' => 'macaca_mulatta_core_70_10',
'macEug1' => 'macropus_eugenii_core_70_1',
'melGal1' => 'meleagris_gallopavo_core_70_21',
'micMur1' => 'microcebus_murinus_core_70_1',
'monDom5' => 'monodelphis_domestica_core_70_5',
'mm10' => 'mus_musculus_core_70_38',
'musFur1' => 'mustela_putorius_furo_core_70_1',
'myoLuc2' => 'myotis_lucifugus_core_70_2',
'nomLeu1' => 'nomascus_leucogenys_core_70_1',
'ochPri2' => 'ochotona_princeps_core_70_1',
'oreNil1' => 'oreochromis_niloticus_core_70_1',
'ornAna1' => 'ornithorhynchus_anatinus_core_70_1',
'oryCun2' => 'oryctolagus_cuniculus_core_70_3',
'oryLat2' => 'oryzias_latipes_core_70_1',
'otoGar3' => 'otolemur_garnettii_core_70_3',
'panTro4' => 'pan_troglodytes_core_70_214',
'pelSin1' => 'pelodiscus_sinensis_core_70_1',
'petMar2' => 'petromyzon_marinus_core_70_7',
'ponAbe2' => 'pongo_abelii_core_70_1',
'proCap1' => 'procavia_capensis_core_70_1',
'pteVam1' => 'pteropus_vampyrus_core_70_1',
'rn5' => 'rattus_norvegicus_core_70_5',
'sacCer3' => 'saccharomyces_cerevisiae_core_70_4',
'sarHar1' => 'sarcophilus_harrisii_core_70_7',
'sorAra1' => 'sorex_araneus_core_70_1',
'susScr3' => 'sus_scrofa_core_70_102',
'taeGut1' => 'taeniopygia_guttata_core_70_1',
'fr2' => 'takifugu_rubripes_core_70_4',
'tarSyr1' => 'tarsius_syrichta_core_70_1',
'tetNig2' => 'tetraodon_nigroviridis_core_70_8',
'tupBel1' => 'tupaia_belangeri_core_70_1',
'turTru1' => 'tursiops_truncatus_core_70_1',
'vicPac1' => 'vicugna_pacos_core_70_1',
'xenTro3' => 'xenopus_tropicalis_core_70_42',
'xipMac1' => 'xiphophorus_maculatus_core_70_1',
);

my @versionList = qw( 70 69 68 67 65 64 63 62 61 60 59 58 57 56 55 54 52 51 50 49 48 47 46 35 );


my @ensGtfReference;
$ensGtfReference[70] = \%ensGeneGtfFileNames_70;
$ensGtfReference[69] = \%ensGeneGtfFileNames_69;
$ensGtfReference[68] = \%ensGeneGtfFileNames_68;
$ensGtfReference[67] = \%ensGeneGtfFileNames_67;
$ensGtfReference[65] = \%ensGeneGtfFileNames_65;
$ensGtfReference[64] = \%ensGeneGtfFileNames_64;
$ensGtfReference[63] = \%ensGeneGtfFileNames_63;
$ensGtfReference[62] = \%ensGeneGtfFileNames_62;
$ensGtfReference[61] = \%ensGeneGtfFileNames_61;
$ensGtfReference[60] = \%ensGeneGtfFileNames_60;
$ensGtfReference[59] = \%ensGeneGtfFileNames_59;
$ensGtfReference[58] = \%ensGeneGtfFileNames_58;
$ensGtfReference[57] = \%ensGeneGtfFileNames_57;
$ensGtfReference[56] = \%ensGeneGtfFileNames_56;
$ensGtfReference[55] = \%ensGeneGtfFileNames_55;
$ensGtfReference[54] = \%ensGeneGtfFileNames_54;
$ensGtfReference[52] = \%ensGeneGtfFileNames_52;
$ensGtfReference[51] = \%ensGeneGtfFileNames_51;
$ensGtfReference[50] = \%ensGeneGtfFileNames_50;
$ensGtfReference[49] = \%ensGeneGtfFileNames_49;
$ensGtfReference[48] = \%ensGeneGtfFileNames_48;
$ensGtfReference[47] = \%ensGeneGtfFileNames_47;
$ensGtfReference[46] = \%ensGeneGtfFileNames_46;
$ensGtfReference[35] = \%ensGeneGtfFileNames_35;
my @ensPepReference;
$ensPepReference[70] = \%ensGeneFtpPeptideFileNames_70;
$ensPepReference[69] = \%ensGeneFtpPeptideFileNames_69;
$ensPepReference[68] = \%ensGeneFtpPeptideFileNames_68;
$ensPepReference[67] = \%ensGeneFtpPeptideFileNames_67;
$ensPepReference[65] = \%ensGeneFtpPeptideFileNames_65;
$ensPepReference[64] = \%ensGeneFtpPeptideFileNames_64;
$ensPepReference[63] = \%ensGeneFtpPeptideFileNames_63;
$ensPepReference[62] = \%ensGeneFtpPeptideFileNames_62;
$ensPepReference[61] = \%ensGeneFtpPeptideFileNames_61;
$ensPepReference[60] = \%ensGeneFtpPeptideFileNames_60;
$ensPepReference[59] = \%ensGeneFtpPeptideFileNames_59;
$ensPepReference[58] = \%ensGeneFtpPeptideFileNames_58;
$ensPepReference[57] = \%ensGeneFtpPeptideFileNames_57;
$ensPepReference[56] = \%ensGeneFtpPeptideFileNames_56;
$ensPepReference[55] = \%ensGeneFtpPeptideFileNames_55;
$ensPepReference[54] = \%ensGeneFtpPeptideFileNames_54;
$ensPepReference[52] = \%ensGeneFtpPeptideFileNames_52;
$ensPepReference[51] = \%ensGeneFtpPeptideFileNames_51;
$ensPepReference[50] = \%ensGeneFtpPeptideFileNames_50;
$ensPepReference[49] = \%ensGeneFtpPeptideFileNames_49;
$ensPepReference[48] = \%ensGeneFtpPeptideFileNames_48;
$ensPepReference[47] = \%ensGeneFtpPeptideFileNames_47;
$ensPepReference[46] = \%ensGeneFtpPeptideFileNames_46;
$ensPepReference[35] = \%ensGeneFtpPeptideFileNames_35;
my @ensMySqlReference;
$ensMySqlReference[70] = \%ensGeneFtpMySqlFileNames_70;
$ensMySqlReference[69] = \%ensGeneFtpMySqlFileNames_69;
$ensMySqlReference[68] = \%ensGeneFtpMySqlFileNames_68;
$ensMySqlReference[67] = \%ensGeneFtpMySqlFileNames_67;
$ensMySqlReference[65] = \%ensGeneFtpMySqlFileNames_65;
$ensMySqlReference[64] = \%ensGeneFtpMySqlFileNames_64;
$ensMySqlReference[63] = \%ensGeneFtpMySqlFileNames_63;
$ensMySqlReference[62] = \%ensGeneFtpMySqlFileNames_62;
$ensMySqlReference[61] = \%ensGeneFtpMySqlFileNames_61;
$ensMySqlReference[60] = \%ensGeneFtpMySqlFileNames_60;
$ensMySqlReference[59] = \%ensGeneFtpMySqlFileNames_59;
$ensMySqlReference[58] = \%ensGeneFtpMySqlFileNames_58;
$ensMySqlReference[57] = \%ensGeneFtpMySqlFileNames_57;
$ensMySqlReference[56] = \%ensGeneFtpMySqlFileNames_56;
$ensMySqlReference[55] = \%ensGeneFtpMySqlFileNames_55;
$ensMySqlReference[54] = \%ensGeneFtpMySqlFileNames_54;
$ensMySqlReference[52] = \%ensGeneFtpMySqlFileNames_52;
$ensMySqlReference[51] = \%ensGeneFtpMySqlFileNames_51;
$ensMySqlReference[50] = \%ensGeneFtpMySqlFileNames_50;
$ensMySqlReference[49] = \%ensGeneFtpMySqlFileNames_49;
$ensMySqlReference[48] = \%ensGeneFtpMySqlFileNames_48;
$ensMySqlReference[47] = \%ensGeneFtpMySqlFileNames_47;
$ensMySqlReference[46] = \%ensGeneFtpMySqlFileNames_46;
$ensMySqlReference[35] = \%ensGeneFtpMySqlFileNames_35;

sub ensVersionList() {
   return @versionList;
}

sub ensGeneVersioning($$) {
#  given a UCSC db name, and an Ensembl version number, return
#	FTP gtf file name, peptide file name, MySql core directory
#	and archive version string
  my ($ucscDb, $ensVersion) = @_;
  if (defined($ensGtfReference[$ensVersion]) &&
	defined($ensPepReference[$ensVersion])) {
    my $gtfReference = $ensGtfReference[$ensVersion];
    my $pepReference = $ensPepReference[$ensVersion];
    my $mySqlReference = $ensMySqlReference[$ensVersion];
    my $gtfDir = "release-$ensVersion/gtf/";
    my $pepDir = "release-$ensVersion/fasta/";
    my $mySqlDir = "release-$ensVersion/mysql/";
    if ($ensVersion < 47) {
	$gtfDir = "release-$ensVersion/";
	$pepDir = "release-$ensVersion/";
	$mySqlDir = "release-$ensVersion/";
    }
    if (exists($gtfReference->{$ucscDb}) &&
	exists($pepReference->{$ucscDb}) &&
	exists($mySqlReference->{$ucscDb}) ) {
	my $gtfName =  $ensemblFTP . $gtfDir . $gtfReference->{$ucscDb};
	my $pepName =  $ensemblFTP . $pepDir . $pepReference->{$ucscDb};
	my $mySqlName =  $ensemblFTP . $mySqlDir . $mySqlReference->{$ucscDb};
	return ($gtfName, $pepName, $mySqlName, $verToDate[$ensVersion]);
    }
  }
  return (undef, undef, undef);
}