/* vgPrbAliAll.h was originally generated by the autoSql program, which also * generated vgPrbAliAll.c and vgPrbAliAll.sql. This header links the database and * the RAM representation of objects. */ #ifndef VGPRBALIALL_H #define VGPRBALIALL_H #ifndef JKSQL_H #include "jksql.h" #endif #define VGPRBALIALL_NUM_COLS 3 struct vgPrbAliAll /* Define Probe Alignment status for track vgAllProbes */ { struct vgPrbAliAll *next; /* Next in singly linked list. */ char *db; /* assembly */ int vgPrb; /* vgPrb id */ char *status; /* new,ali,none */ }; void vgPrbAliAllStaticLoad(char **row, struct vgPrbAliAll *ret); /* Load a row from vgPrbAliAll table into ret. The contents of ret will * be replaced at the next call to this function. */ struct vgPrbAliAll *vgPrbAliAllLoad(char **row); /* Load a vgPrbAliAll from row fetched with select * from vgPrbAliAll * from database. Dispose of this with vgPrbAliAllFree(). */ struct vgPrbAliAll *vgPrbAliAllLoadAll(char *fileName); /* Load all vgPrbAliAll from whitespace-separated file. * Dispose of this with vgPrbAliAllFreeList(). */ struct vgPrbAliAll *vgPrbAliAllLoadAllByChar(char *fileName, char chopper); /* Load all vgPrbAliAll from chopper separated file. * Dispose of this with vgPrbAliAllFreeList(). */ #define vgPrbAliAllLoadAllByTab(a) vgPrbAliAllLoadAllByChar(a, '\t'); /* Load all vgPrbAliAll from tab separated file. * Dispose of this with vgPrbAliAllFreeList(). */ struct vgPrbAliAll *vgPrbAliAllLoadByQuery(struct sqlConnection *conn, char *query); /* Load all vgPrbAliAll from table that satisfy the query given. * Where query is of the form 'select * from example where something=something' * or 'select example.* from example, anotherTable where example.something = * anotherTable.something'. * Dispose of this with vgPrbAliAllFreeList(). */ void vgPrbAliAllSaveToDb(struct sqlConnection *conn, struct vgPrbAliAll *el, char *tableName, int updateSize); /* Save vgPrbAliAll as a row to the table specified by tableName. * As blob fields may be arbitrary size updateSize specifies the approx size * of a string that would contain the entire query. Arrays of native types are * converted to comma separated strings and loaded as such, User defined types are * inserted as NULL. Note that strings must be escaped to allow insertion into the database. * For example "autosql's features include" --> "autosql\'s features include" * If worried about this use vgPrbAliAllSaveToDbEscaped() */ void vgPrbAliAllSaveToDbEscaped(struct sqlConnection *conn, struct vgPrbAliAll *el, char *tableName, int updateSize); /* Save vgPrbAliAll as a row to the table specified by tableName. * As blob fields may be arbitrary size updateSize specifies the approx size. * of a string that would contain the entire query. Automatically * escapes all simple strings (not arrays of string) but may be slower than vgPrbAliAllSaveToDb(). * For example automatically copies and converts: * "autosql's features include" --> "autosql\'s features include" * before inserting into database. */ struct vgPrbAliAll *vgPrbAliAllCommaIn(char **pS, struct vgPrbAliAll *ret); /* Create a vgPrbAliAll out of a comma separated string. * This will fill in ret if non-null, otherwise will * return a new vgPrbAliAll */ void vgPrbAliAllFree(struct vgPrbAliAll **pEl); /* Free a single dynamically allocated vgPrbAliAll such as created * with vgPrbAliAllLoad(). */ void vgPrbAliAllFreeList(struct vgPrbAliAll **pList); /* Free a list of dynamically allocated vgPrbAliAll's */ void vgPrbAliAllOutput(struct vgPrbAliAll *el, FILE *f, char sep, char lastSep); /* Print out vgPrbAliAll. Separate fields with sep. Follow last field with lastSep. */ #define vgPrbAliAllTabOut(el,f) vgPrbAliAllOutput(el,f,'\t','\n'); /* Print out vgPrbAliAll as a line in a tab-separated file. */ #define vgPrbAliAllCommaOut(el,f) vgPrbAliAllOutput(el,f,',',','); /* Print out vgPrbAliAll as a comma separated list including final comma. */ /* -------------------------------- End autoSql Generated Code -------------------------------- */ #endif /* VGPRBALIALL_H */