This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by R configure 3.1.1, which was generated by GNU Autoconf 2.69. Invocation command line was $ ../configure --prefix=/data ## --------- ## ## Platform. ## ## --------- ## hostname = mus uname -m = x86_64 uname -r = 2.6.35-22-server uname -s = Linux uname -v = #35-Ubuntu SMP Sat Oct 16 22:02:33 UTC 2010 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = unknown /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /home/lg/bin PATH: /data/bin/ PATH: /home/lg/bin PATH: /data/bin/ PATH: /usr/local/sbin PATH: /usr/local/bin PATH: /usr/sbin PATH: /usr/bin PATH: /sbin PATH: /bin PATH: /usr/games ## ----------- ## ## Core tests. ## ## ----------- ## configure:3672: checking build system type configure:3686: result: x86_64-unknown-linux-gnu configure:3706: checking host system type configure:3719: result: x86_64-unknown-linux-gnu configure:4437: checking for pwd configure:4455: found /bin/pwd configure:4468: result: /bin/pwd configure:4476: checking whether builddir is srcdir configure:4484: result: no configure:4489: checking for working aclocal configure:4493: result: found configure:4502: checking for working autoconf configure:4506: result: found configure:4515: checking for working automake configure:4519: result: found configure:4528: checking for working autoheader configure:4532: result: found configure:4545: checking for gawk configure:4561: found /usr/bin/gawk configure:4572: result: gawk configure:4583: checking whether ln -s works configure:4587: result: yes configure:4598: checking for bison configure:4628: result: no configure:4598: checking for byacc configure:4628: result: no configure:4641: checking for ar configure:4657: found /usr/bin/ar configure:4668: result: ar configure:4696: checking for a BSD-compatible install configure:4764: result: /usr/bin/install -c configure:4799: checking for sed configure:4818: found /bin/sed configure:4830: result: /bin/sed configure:4848: checking for which configure:4866: found /usr/bin/which configure:4878: result: /usr/bin/which configure:4898: checking for less configure:4916: found /usr/bin/less configure:4928: result: /usr/bin/less configure:4951: checking for gtar configure:4984: result: no configure:4951: checking for gnutar configure:4984: result: no configure:4951: checking for tar configure:4969: found /bin/tar configure:4981: result: /bin/tar configure:5003: checking for tex configure:5021: found /usr/bin/tex configure:5033: result: /usr/bin/tex configure:5048: checking for pdftex configure:5066: found /usr/bin/pdftex configure:5078: result: /usr/bin/pdftex configure:5098: checking for pdflatex configure:5116: found /usr/bin/pdflatex configure:5128: result: /usr/bin/pdflatex configure:5148: checking for makeindex configure:5166: found /usr/bin/makeindex configure:5178: result: /usr/bin/makeindex configure:5193: checking for makeinfo configure:5211: found /usr/bin/makeinfo configure:5223: result: /usr/bin/makeinfo configure:5235: checking whether makeinfo version is at least 4.7 configure:5257: result: yes configure:5264: checking for ginstall-info configure:5282: found /usr/bin/ginstall-info configure:5294: result: /usr/bin/ginstall-info configure:5326: checking for texi2dvi configure:5344: found /usr/bin/texi2dvi configure:5356: result: /usr/bin/texi2dvi configure:5376: checking for kpsewhich configure:5394: found /usr/bin/kpsewhich configure:5406: result: /usr/bin/kpsewhich configure:5418: checking for latex inconsolata package configure:5439: result: found insonsolata.sty configure:5452: checking for unzip configure:5470: found /usr/bin/unzip configure:5482: result: /usr/bin/unzip configure:5498: checking for zip configure:5516: found /usr/bin/zip configure:5528: result: /usr/bin/zip configure:5544: checking for gzip configure:5562: found /bin/gzip configure:5574: result: /bin/gzip configure:5590: checking for bzip2 configure:5608: found /bin/bzip2 configure:5620: result: /bin/bzip2 configure:5638: checking for firefox configure:5656: found /home/lg/bin/firefox configure:5668: result: /home/lg/bin/firefox configure:5685: result: using default browser ... /home/lg/bin/firefox configure:5695: checking for acroread configure:5728: result: no configure:5695: checking for acroread4 configure:5728: result: no configure:5695: checking for xdg-open configure:5713: found /usr/bin/xdg-open configure:5725: result: /usr/bin/xdg-open configure:5746: checking for notangle configure:5777: result: false configure:5788: checking for realpath configure:5819: result: false configure:5832: checking for pkg-config configure:5851: found /usr/bin/pkg-config configure:5863: result: /usr/bin/pkg-config configure:5920: checking for gcc configure:5936: found /usr/bin/gcc configure:5947: result: gcc configure:6176: checking for C compiler version configure:6185: gcc --version >&5 gcc (Ubuntu/Linaro 4.4.4-14ubuntu5) 4.4.5 Copyright (C) 2010 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:6196: $? = 0 configure:6185: gcc -v >&5 Using built-in specs. Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 4.4.4-14ubuntu5' --with-bugurl=file:///usr/share/doc/gcc-4.4/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.4 --enable-shared --enable-multiarch --enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.4 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-objc-gc --disable-werror --with-arch-32=i686 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.4.5 (Ubuntu/Linaro 4.4.4-14ubuntu5) configure:6196: $? = 0 configure:6185: gcc -V >&5 gcc: '-V' option must have argument configure:6196: $? = 1 configure:6185: gcc -qversion >&5 gcc: unrecognized option '-qversion' gcc: no input files configure:6196: $? = 1 configure:6216: checking whether the C compiler works configure:6238: gcc -I/usr/local/include -L/usr/local/lib64 conftest.c >&5 configure:6242: $? = 0 configure:6290: result: yes configure:6293: checking for C compiler default output file name configure:6295: result: a.out configure:6301: checking for suffix of executables configure:6308: gcc -o conftest -I/usr/local/include -L/usr/local/lib64 conftest.c >&5 configure:6312: $? = 0 configure:6334: result: configure:6356: checking whether we are cross compiling configure:6364: gcc -o conftest -I/usr/local/include -L/usr/local/lib64 conftest.c >&5 configure:6368: $? = 0 configure:6375: ./conftest configure:6379: $? = 0 configure:6394: result: no configure:6399: checking for suffix of object files configure:6421: gcc -c -I/usr/local/include conftest.c >&5 configure:6425: $? = 0 configure:6446: result: o configure:6450: checking whether we are using the GNU C compiler configure:6469: gcc -c -I/usr/local/include conftest.c >&5 configure:6469: $? = 0 configure:6478: result: yes configure:6487: checking whether gcc accepts -g configure:6507: gcc -c -g -I/usr/local/include conftest.c >&5 configure:6507: $? = 0 configure:6548: result: yes configure:6565: checking for gcc option to accept ISO C89 configure:6628: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:6628: $? = 0 configure:6641: result: none needed configure:6668: checking how to run the C preprocessor configure:6699: gcc -E -I/usr/local/include conftest.c configure:6699: $? = 0 configure:6713: gcc -E -I/usr/local/include conftest.c conftest.c:17: fatal error: ac_nonexistent.h: No such file or directory compilation terminated. configure:6713: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | /* end confdefs.h. */ | #include configure:6738: result: gcc -E configure:6758: gcc -E -I/usr/local/include conftest.c configure:6758: $? = 0 configure:6772: gcc -E -I/usr/local/include conftest.c conftest.c:17: fatal error: ac_nonexistent.h: No such file or directory compilation terminated. configure:6772: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | /* end confdefs.h. */ | #include configure:6801: checking for grep that handles long lines and -e configure:6859: result: /bin/grep configure:6864: checking for egrep configure:6926: result: /bin/grep -E configure:6932: checking whether gcc needs -traditional configure:6966: result: no configure:6978: checking how to run the C preprocessor configure:7048: result: gcc -E configure:7068: gcc -E -I/usr/local/include conftest.c configure:7068: $? = 0 configure:7082: gcc -E -I/usr/local/include conftest.c conftest.c:17: fatal error: ac_nonexistent.h: No such file or directory compilation terminated. configure:7082: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | /* end confdefs.h. */ | #include configure:7178: checking for gfortran configure:7194: found /usr/bin/gfortran configure:7205: result: gfortran configure:7326: checking for Fortran 77 compiler version configure:7335: gfortran --version >&5 GNU Fortran (Ubuntu/Linaro 4.4.4-14ubuntu5) 4.4.5 Copyright (C) 2010 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING configure:7346: $? = 0 configure:7335: gfortran -v >&5 Using built-in specs. Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 4.4.4-14ubuntu5' --with-bugurl=file:///usr/share/doc/gcc-4.4/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.4 --enable-shared --enable-multiarch --enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.4 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-objc-gc --disable-werror --with-arch-32=i686 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.4.5 (Ubuntu/Linaro 4.4.4-14ubuntu5) configure:7346: $? = 0 configure:7335: gfortran -V >&5 gfortran: '-V' option must have argument configure:7346: $? = 1 configure:7335: gfortran -qversion >&5 gfortran: unrecognized option '-qversion' gfortran: no input files configure:7346: $? = 1 configure:7355: checking whether we are using the GNU Fortran 77 compiler configure:7368: gfortran -c conftest.F >&5 configure:7368: $? = 0 configure:7377: result: yes configure:7383: checking whether gfortran accepts -g configure:7394: gfortran -c -g conftest.f >&5 configure:7394: $? = 0 configure:7402: result: yes configure:7493: checking for g++ configure:7509: found /usr/bin/g++ configure:7520: result: g++ configure:7547: checking for C++ compiler version configure:7556: g++ --version >&5 g++ (Ubuntu/Linaro 4.4.4-14ubuntu5) 4.4.5 Copyright (C) 2010 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:7567: $? = 0 configure:7556: g++ -v >&5 Using built-in specs. Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 4.4.4-14ubuntu5' --with-bugurl=file:///usr/share/doc/gcc-4.4/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.4 --enable-shared --enable-multiarch --enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.4 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-objc-gc --disable-werror --with-arch-32=i686 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.4.5 (Ubuntu/Linaro 4.4.4-14ubuntu5) configure:7567: $? = 0 configure:7556: g++ -V >&5 g++: '-V' option must have argument configure:7567: $? = 1 configure:7556: g++ -qversion >&5 g++: unrecognized option '-qversion' g++: no input files configure:7567: $? = 1 configure:7571: checking whether we are using the GNU C++ compiler configure:7590: g++ -c -I/usr/local/include conftest.cpp >&5 configure:7590: $? = 0 configure:7599: result: yes configure:7608: checking whether g++ accepts -g configure:7628: g++ -c -g -I/usr/local/include conftest.cpp >&5 configure:7628: $? = 0 configure:7669: result: yes configure:7697: checking how to run the C++ preprocessor configure:7724: g++ -E -I/usr/local/include conftest.cpp configure:7724: $? = 0 configure:7738: g++ -E -I/usr/local/include conftest.cpp conftest.cpp:17: fatal error: ac_nonexistent.h: No such file or directory compilation terminated. configure:7738: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | /* end confdefs.h. */ | #include configure:7763: result: g++ -E configure:7783: g++ -E -I/usr/local/include conftest.cpp configure:7783: $? = 0 configure:7797: g++ -E -I/usr/local/include conftest.cpp conftest.cpp:17: fatal error: ac_nonexistent.h: No such file or directory compilation terminated. configure:7797: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | /* end confdefs.h. */ | #include configure:7831: checking whether __attribute__((visibility())) is supported configure:7842: gcc -Werror -S conftest.c -o conftest.s 1>&5 configure:7845: $? = 0 configure:7854: result: yes configure:7865: checking whether gcc accepts -fvisibility configure:7881: gcc -c -g -O2 -fvisibility=hidden -I/usr/local/include conftest.c >&5 configure:7881: $? = 0 configure:7888: result: yes configure:7913: checking whether gfortran accepts -fvisibility configure:7923: gfortran -c -g -O2 -fvisibility=hidden conftest.f >&5 configure:7923: $? = 0 configure:7930: result: yes configure:7953: checking for ANSI C header files configure:7973: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:7973: $? = 0 configure:8046: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c >&5 configure:8046: $? = 0 configure:8046: ./conftest configure:8046: $? = 0 configure:8057: result: yes configure:8070: checking for sys/types.h configure:8070: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:8070: $? = 0 configure:8070: result: yes configure:8070: checking for sys/stat.h configure:8070: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:8070: $? = 0 configure:8070: result: yes configure:8070: checking for stdlib.h configure:8070: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:8070: $? = 0 configure:8070: result: yes configure:8070: checking for string.h configure:8070: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:8070: $? = 0 configure:8070: result: yes configure:8070: checking for memory.h configure:8070: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:8070: $? = 0 configure:8070: result: yes configure:8070: checking for strings.h configure:8070: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:8070: $? = 0 configure:8070: result: yes configure:8070: checking for inttypes.h configure:8070: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:8070: $? = 0 configure:8070: result: yes configure:8070: checking for stdint.h configure:8070: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:8070: $? = 0 configure:8070: result: yes configure:8070: checking for unistd.h configure:8070: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:8070: $? = 0 configure:8070: result: yes configure:8083: checking minix/config.h usability configure:8083: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c:61: fatal error: minix/config.h: No such file or directory compilation terminated. configure:8083: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:8083: result: no configure:8083: checking minix/config.h presence configure:8083: gcc -E -I/usr/local/include conftest.c conftest.c:28: fatal error: minix/config.h: No such file or directory compilation terminated. configure:8083: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | /* end confdefs.h. */ | #include configure:8083: result: no configure:8083: checking for minix/config.h configure:8083: result: no configure:8104: checking whether it is safe to define __EXTENSIONS__ configure:8122: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:8122: $? = 0 configure:8129: result: yes configure:8199: checking for gcc configure:8215: found /usr/bin/gcc configure:8226: result: gcc configure:8251: checking for Objective C compiler version configure:8260: gcc --version >&5 gcc (Ubuntu/Linaro 4.4.4-14ubuntu5) 4.4.5 Copyright (C) 2010 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:8271: $? = 0 configure:8260: gcc -v >&5 Using built-in specs. Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 4.4.4-14ubuntu5' --with-bugurl=file:///usr/share/doc/gcc-4.4/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.4 --enable-shared --enable-multiarch --enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.4 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-objc-gc --disable-werror --with-arch-32=i686 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.4.5 (Ubuntu/Linaro 4.4.4-14ubuntu5) configure:8271: $? = 0 configure:8260: gcc -V >&5 gcc: '-V' option must have argument configure:8271: $? = 1 configure:8260: gcc -qversion >&5 gcc: unrecognized option '-qversion' gcc: no input files configure:8271: $? = 1 configure:8275: checking whether we are using the GNU Objective C compiler configure:8294: gcc -c -I/usr/local/include conftest.m >&5 gcc: error trying to exec 'cc1obj': execvp: No such file or directory configure:8294: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | /* end confdefs.h. */ | | int | main () | { | #ifndef __GNUC__ | choke me | #endif | | ; | return 0; | } configure:8303: result: no configure:8312: checking whether gcc accepts -g configure:8332: gcc -c -g -I/usr/local/include conftest.m >&5 gcc: error trying to exec 'cc1obj': execvp: No such file or directory configure:8332: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | /* end confdefs.h. */ | | int | main () | { | | ; | return 0; | } configure:8347: gcc -c -I/usr/local/include conftest.m >&5 gcc: error trying to exec 'cc1obj': execvp: No such file or directory configure:8347: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | /* end confdefs.h. */ | | int | main () | { | | ; | return 0; | } configure:8363: gcc -c -g -I/usr/local/include conftest.m >&5 gcc: error trying to exec 'cc1obj': execvp: No such file or directory configure:8363: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | /* end confdefs.h. */ | | int | main () | { | | ; | return 0; | } configure:8373: result: no configure:8416: gcc -c -I/usr/local/include conftest.m >&5 gcc: error trying to exec 'cc1obj': execvp: No such file or directory configure:8416: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | /* end confdefs.h. */ | | int | main () | { | id foo; | ; | return 0; | } configure:8432: checking for Objective C++ compiler configure:8438: result: trying some possibilities configure:8483: checking whether g++ can compile ObjC++ running: g++ -c conftest.mm -I/usr/local/include g++: error trying to exec 'cc1objplus': execvp: No such file or directory configure:8516: result: no configure:8520: checking whether can compile ObjC++ running: -c conftest.mm -I/usr/local/include ../configure: line 8547: -c: command not found configure:8553: result: no configure:8570: result: no working ObjC++ compiler found configure:8642: checking for a sed that does not truncate output configure:8706: result: /bin/sed configure:8724: checking for fgrep configure:8786: result: /bin/grep -F configure:8814: checking for ld used by gcc configure:8881: result: /usr/bin/ld configure:8888: checking if the linker (/usr/bin/ld) is GNU ld configure:8903: result: yes configure:8915: checking for BSD- or MS-compatible name lister (nm) configure:8964: result: /usr/bin/nm -B configure:9082: checking the name lister (/usr/bin/nm -B) interface configure:9089: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:9092: /usr/bin/nm -B "conftest.o" configure:9095: output 0000000000000000 B some_variable configure:9102: result: BSD nm configure:9106: checking the maximum length of command line arguments configure:9226: result: 1572864 configure:9243: checking whether the shell understands some XSI constructs configure:9253: result: yes configure:9257: checking whether the shell understands "+=" configure:9263: result: yes configure:9298: checking for /usr/bin/ld option to reload object files configure:9305: result: -r configure:9374: checking for objdump configure:9390: found /usr/bin/objdump configure:9401: result: objdump configure:9433: checking how to recognize dependent libraries configure:9629: result: pass_all configure:9794: checking for strip configure:9810: found /usr/bin/strip configure:9821: result: strip configure:9893: checking for ranlib configure:9909: found /usr/bin/ranlib configure:9920: result: ranlib configure:10010: checking command to parse /usr/bin/nm -B output from gcc object configure:10128: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:10131: $? = 0 configure:10135: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' \> conftest.nm configure:10138: $? = 0 configure:10192: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c conftstm.o >&5 configure:10195: $? = 0 configure:10233: result: ok configure:10845: checking for dlfcn.h configure:10845: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:10845: $? = 0 configure:10845: result: yes configure:10970: checking for C++ compiler version configure:10979: g++ --version >&5 g++ (Ubuntu/Linaro 4.4.4-14ubuntu5) 4.4.5 Copyright (C) 2010 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:10990: $? = 0 configure:10979: g++ -v >&5 Using built-in specs. Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 4.4.4-14ubuntu5' --with-bugurl=file:///usr/share/doc/gcc-4.4/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.4 --enable-shared --enable-multiarch --enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.4 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-objc-gc --disable-werror --with-arch-32=i686 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.4.5 (Ubuntu/Linaro 4.4.4-14ubuntu5) configure:10990: $? = 0 configure:10979: g++ -V >&5 g++: '-V' option must have argument configure:10990: $? = 1 configure:10979: g++ -qversion >&5 g++: unrecognized option '-qversion' g++: no input files configure:10990: $? = 1 configure:10994: checking whether we are using the GNU C++ compiler configure:11022: result: yes configure:11031: checking whether g++ accepts -g configure:11092: result: yes configure:11123: checking how to run the C++ preprocessor configure:11189: result: g++ -E configure:11209: g++ -E -I/usr/local/include conftest.cpp configure:11209: $? = 0 configure:11223: g++ -E -I/usr/local/include conftest.cpp conftest.cpp:34: fatal error: ac_nonexistent.h: No such file or directory compilation terminated. configure:11223: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | /* end confdefs.h. */ | #include configure:11364: checking for Fortran 77 compiler version configure:11373: gfortran --version >&5 GNU Fortran (Ubuntu/Linaro 4.4.4-14ubuntu5) 4.4.5 Copyright (C) 2010 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING configure:11384: $? = 0 configure:11373: gfortran -v >&5 Using built-in specs. Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 4.4.4-14ubuntu5' --with-bugurl=file:///usr/share/doc/gcc-4.4/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.4 --enable-shared --enable-multiarch --enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.4 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-objc-gc --disable-werror --with-arch-32=i686 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.4.5 (Ubuntu/Linaro 4.4.4-14ubuntu5) configure:11384: $? = 0 configure:11373: gfortran -V >&5 gfortran: '-V' option must have argument configure:11384: $? = 1 configure:11373: gfortran -qversion >&5 gfortran: unrecognized option '-qversion' gfortran: no input files configure:11384: $? = 1 configure:11393: checking whether we are using the GNU Fortran 77 compiler configure:11415: result: yes configure:11421: checking whether gfortran accepts -g configure:11440: result: yes configure:11618: checking for objdir configure:11633: result: .libs configure:11929: checking if gcc supports -fno-rtti -fno-exceptions configure:11947: gcc -c -g -O2 -I/usr/local/include -fno-rtti -fno-exceptions conftest.c >&5 cc1: warning: command line option "-fno-rtti" is valid for C++/ObjC++ but not for C configure:11951: $? = 0 configure:11964: result: no configure:11984: checking for gcc option to produce PIC configure:12256: result: -fPIC -DPIC configure:12268: checking if gcc PIC flag -fPIC -DPIC works configure:12286: gcc -c -g -O2 -I/usr/local/include -fPIC -DPIC -DPIC conftest.c >&5 configure:12290: $? = 0 configure:12303: result: yes configure:12327: checking if gcc static flag -static works configure:12355: result: yes configure:12370: checking if gcc supports -c -o file.o configure:12391: gcc -c -g -O2 -I/usr/local/include -o out/conftest2.o conftest.c >&5 configure:12395: $? = 0 configure:12417: result: yes configure:12425: checking if gcc supports -c -o file.o configure:12472: result: yes configure:12505: checking whether the gcc linker (/usr/bin/ld) supports shared libraries configure:13491: result: yes configure:13528: checking whether -lc should be explicitly linked in configure:13533: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:13536: $? = 0 configure:13551: gcc -shared conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep -lc \>/dev/null 2\>\&1 configure:13554: $? = 0 configure:13566: result: no configure:13730: checking dynamic linker characteristics configure:14163: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 -Wl,-rpath -Wl,/foo conftest.c >&5 configure:14163: $? = 0 configure:14381: result: GNU/Linux ld.so configure:14483: checking how to hardcode library paths into programs configure:14508: result: immediate configure:15028: checking whether stripping libraries is possible configure:15033: result: yes configure:15068: checking if libtool supports shared libraries configure:15070: result: yes configure:15073: checking whether to build shared libraries configure:15094: result: yes configure:15097: checking whether to build static libraries configure:15101: result: no configure:15244: checking for ld used by g++ configure:15311: result: /usr/bin/ld configure:15318: checking if the linker (/usr/bin/ld) is GNU ld configure:15333: result: yes configure:15388: checking whether the g++ linker (/usr/bin/ld) supports shared libraries configure:16301: result: yes configure:16329: g++ -c -g -O2 -I/usr/local/include conftest.cpp >&5 configure:16332: $? = 0 configure:16514: checking for g++ option to produce PIC configure:16831: result: -fPIC -DPIC configure:16840: checking if g++ PIC flag -fPIC -DPIC works configure:16858: g++ -c -g -O2 -I/usr/local/include -fPIC -DPIC -DPIC conftest.cpp >&5 configure:16862: $? = 0 configure:16875: result: yes configure:16896: checking if g++ static flag -static works configure:16924: result: yes configure:16936: checking if g++ supports -c -o file.o configure:16957: g++ -c -g -O2 -I/usr/local/include -o out/conftest2.o conftest.cpp >&5 configure:16961: $? = 0 configure:16983: result: yes configure:16988: checking if g++ supports -c -o file.o configure:17035: result: yes configure:17065: checking whether the g++ linker (/usr/bin/ld) supports shared libraries configure:17091: result: yes configure:17228: checking dynamic linker characteristics configure:17609: g++ -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 -Wl,-rpath -Wl,/foo conftest.cpp >&5 configure:17609: $? = 0 configure:17827: result: GNU/Linux ld.so configure:17878: checking how to hardcode library paths into programs configure:17903: result: immediate configure:18044: checking if libtool supports shared libraries configure:18046: result: yes configure:18049: checking whether to build shared libraries configure:18069: result: yes configure:18072: checking whether to build static libraries configure:18076: result: no configure:18090: checking for gfortran option to produce PIC configure:18362: result: -fPIC configure:18371: checking if gfortran PIC flag -fPIC works configure:18389: gfortran -c -g -O2 -fPIC conftest.f >&5 configure:18393: $? = 0 configure:18406: result: yes configure:18427: checking if gfortran static flag -static works configure:18455: result: yes configure:18467: checking if gfortran supports -c -o file.o configure:18488: gfortran -c -g -O2 -o out/conftest2.o conftest.f >&5 configure:18492: $? = 0 configure:18514: result: yes configure:18519: checking if gfortran supports -c -o file.o configure:18566: result: yes configure:18596: checking whether the gfortran linker (/usr/bin/ld) supports shared libraries configure:19569: result: yes configure:19706: checking dynamic linker characteristics configure:20081: gfortran -o conftest -g -O2 -L/usr/local/lib64 -Wl,-rpath -Wl,/foo conftest.f >&5 configure:20081: $? = 0 configure:20299: result: GNU/Linux ld.so configure:20350: checking how to hardcode library paths into programs configure:20375: result: immediate configure:20631: checking for cos in -lm configure:20656: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lm >&5 conftest.c:42: warning: conflicting types for built-in function 'cos' configure:20656: $? = 0 configure:20665: result: yes configure:20679: checking for sin in -lm configure:20704: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lm >&5 conftest.c:42: warning: conflicting types for built-in function 'sin' configure:20704: $? = 0 configure:20713: result: yes configure:20835: checking for dlopen in -ldl configure:20860: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:20860: $? = 0 configure:20869: result: yes configure:20888: checking readline/history.h usability configure:20888: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:20888: $? = 0 configure:20888: result: yes configure:20888: checking readline/history.h presence configure:20888: gcc -E -I/usr/local/include conftest.c configure:20888: $? = 0 configure:20888: result: yes configure:20888: checking for readline/history.h configure:20888: result: yes configure:20888: checking readline/readline.h usability configure:20888: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:20888: $? = 0 configure:20888: result: yes configure:20888: checking readline/readline.h presence configure:20888: gcc -E -I/usr/local/include conftest.c configure:20888: $? = 0 configure:20888: result: yes configure:20888: checking for readline/readline.h configure:20888: result: yes configure:20902: checking for rl_callback_read_char in -lreadline configure:20927: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lreadline >&5 configure:20927: $? = 0 configure:20936: result: yes configure:21120: checking for history_truncate_file configure:21120: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lreadline >&5 configure:21120: $? = 0 configure:21120: result: yes configure:21135: checking whether rl_completion_matches exists and is declared configure:21157: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lreadline >&5 configure:21157: $? = 0 configure:21166: result: yes configure:21184: checking for ANSI C header files configure:21288: result: yes configure:21299: checking for dirent.h that defines DIR configure:21318: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21318: $? = 0 configure:21326: result: yes configure:21339: checking for library containing opendir configure:21370: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:21370: $? = 0 configure:21387: result: none required configure:21458: checking for sys/wait.h that is POSIX.1 compatible configure:21484: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21484: $? = 0 configure:21491: result: yes configure:21519: checking arpa/inet.h usability configure:21519: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21519: $? = 0 configure:21519: result: yes configure:21519: checking arpa/inet.h presence configure:21519: gcc -E -I/usr/local/include conftest.c configure:21519: $? = 0 configure:21519: result: yes configure:21519: checking for arpa/inet.h configure:21519: result: yes configure:21519: checking dl.h usability configure:21519: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c:79: fatal error: dl.h: No such file or directory compilation terminated. configure:21519: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:21519: result: no configure:21519: checking dl.h presence configure:21519: gcc -E -I/usr/local/include conftest.c conftest.c:46: fatal error: dl.h: No such file or directory compilation terminated. configure:21519: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | /* end confdefs.h. */ | #include configure:21519: result: no configure:21519: checking for dl.h configure:21519: result: no configure:21519: checking for dlfcn.h configure:21519: result: yes configure:21519: checking elf.h usability configure:21519: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21519: $? = 0 configure:21519: result: yes configure:21519: checking elf.h presence configure:21519: gcc -E -I/usr/local/include conftest.c configure:21519: $? = 0 configure:21519: result: yes configure:21519: checking for elf.h configure:21519: result: yes configure:21519: checking fcntl.h usability configure:21519: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21519: $? = 0 configure:21519: result: yes configure:21519: checking fcntl.h presence configure:21519: gcc -E -I/usr/local/include conftest.c configure:21519: $? = 0 configure:21519: result: yes configure:21519: checking for fcntl.h configure:21519: result: yes configure:21519: checking floatingpoint.h usability configure:21519: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c:82: fatal error: floatingpoint.h: No such file or directory compilation terminated. configure:21519: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:21519: result: no configure:21519: checking floatingpoint.h presence configure:21519: gcc -E -I/usr/local/include conftest.c conftest.c:49: fatal error: floatingpoint.h: No such file or directory compilation terminated. configure:21519: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | /* end confdefs.h. */ | #include configure:21519: result: no configure:21519: checking for floatingpoint.h configure:21519: result: no configure:21519: checking fpu_control.h usability configure:21519: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21519: $? = 0 configure:21519: result: yes configure:21519: checking fpu_control.h presence configure:21519: gcc -E -I/usr/local/include conftest.c configure:21519: $? = 0 configure:21519: result: yes configure:21519: checking for fpu_control.h configure:21519: result: yes configure:21519: checking glob.h usability configure:21519: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21519: $? = 0 configure:21519: result: yes configure:21519: checking glob.h presence configure:21519: gcc -E -I/usr/local/include conftest.c configure:21519: $? = 0 configure:21519: result: yes configure:21519: checking for glob.h configure:21519: result: yes configure:21519: checking grp.h usability configure:21519: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21519: $? = 0 configure:21519: result: yes configure:21519: checking grp.h presence configure:21519: gcc -E -I/usr/local/include conftest.c configure:21519: $? = 0 configure:21519: result: yes configure:21519: checking for grp.h configure:21519: result: yes configure:21519: checking langinfo.h usability configure:21519: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21519: $? = 0 configure:21519: result: yes configure:21519: checking langinfo.h presence configure:21519: gcc -E -I/usr/local/include conftest.c configure:21519: $? = 0 configure:21519: result: yes configure:21519: checking for langinfo.h configure:21519: result: yes configure:21519: checking netdb.h usability configure:21519: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21519: $? = 0 configure:21519: result: yes configure:21519: checking netdb.h presence configure:21519: gcc -E -I/usr/local/include conftest.c configure:21519: $? = 0 configure:21519: result: yes configure:21519: checking for netdb.h configure:21519: result: yes configure:21519: checking netinet/in.h usability configure:21519: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21519: $? = 0 configure:21519: result: yes configure:21519: checking netinet/in.h presence configure:21519: gcc -E -I/usr/local/include conftest.c configure:21519: $? = 0 configure:21519: result: yes configure:21519: checking for netinet/in.h configure:21519: result: yes configure:21519: checking pwd.h usability configure:21519: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21519: $? = 0 configure:21519: result: yes configure:21519: checking pwd.h presence configure:21519: gcc -E -I/usr/local/include conftest.c configure:21519: $? = 0 configure:21519: result: yes configure:21519: checking for pwd.h configure:21519: result: yes configure:21519: checking sched.h usability configure:21519: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21519: $? = 0 configure:21519: result: yes configure:21519: checking sched.h presence configure:21519: gcc -E -I/usr/local/include conftest.c configure:21519: $? = 0 configure:21519: result: yes configure:21519: checking for sched.h configure:21519: result: yes configure:21519: checking for strings.h configure:21519: result: yes configure:21519: checking sys/param.h usability configure:21519: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21519: $? = 0 configure:21519: result: yes configure:21519: checking sys/param.h presence configure:21519: gcc -E -I/usr/local/include conftest.c configure:21519: $? = 0 configure:21519: result: yes configure:21519: checking for sys/param.h configure:21519: result: yes configure:21519: checking sys/resource.h usability configure:21519: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21519: $? = 0 configure:21519: result: yes configure:21519: checking sys/resource.h presence configure:21519: gcc -E -I/usr/local/include conftest.c configure:21519: $? = 0 configure:21519: result: yes configure:21519: checking for sys/resource.h configure:21519: result: yes configure:21519: checking sys/select.h usability configure:21519: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21519: $? = 0 configure:21519: result: yes configure:21519: checking sys/select.h presence configure:21519: gcc -E -I/usr/local/include conftest.c configure:21519: $? = 0 configure:21519: result: yes configure:21519: checking for sys/select.h configure:21519: result: yes configure:21519: checking sys/socket.h usability configure:21519: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21519: $? = 0 configure:21519: result: yes configure:21519: checking sys/socket.h presence configure:21519: gcc -E -I/usr/local/include conftest.c configure:21519: $? = 0 configure:21519: result: yes configure:21519: checking for sys/socket.h configure:21519: result: yes configure:21519: checking for sys/stat.h configure:21519: result: yes configure:21519: checking sys/time.h usability configure:21519: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21519: $? = 0 configure:21519: result: yes configure:21519: checking sys/time.h presence configure:21519: gcc -E -I/usr/local/include conftest.c configure:21519: $? = 0 configure:21519: result: yes configure:21519: checking for sys/time.h configure:21519: result: yes configure:21519: checking sys/times.h usability configure:21519: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21519: $? = 0 configure:21519: result: yes configure:21519: checking sys/times.h presence configure:21519: gcc -E -I/usr/local/include conftest.c configure:21519: $? = 0 configure:21519: result: yes configure:21519: checking for sys/times.h configure:21519: result: yes configure:21519: checking sys/utsname.h usability configure:21519: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21519: $? = 0 configure:21519: result: yes configure:21519: checking sys/utsname.h presence configure:21519: gcc -E -I/usr/local/include conftest.c configure:21519: $? = 0 configure:21519: result: yes configure:21519: checking for sys/utsname.h configure:21519: result: yes configure:21519: checking for unistd.h configure:21519: result: yes configure:21519: checking utime.h usability configure:21519: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21519: $? = 0 configure:21519: result: yes configure:21519: checking utime.h presence configure:21519: gcc -E -I/usr/local/include conftest.c configure:21519: $? = 0 configure:21519: result: yes configure:21519: checking for utime.h configure:21519: result: yes configure:21537: checking errno.h usability configure:21537: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21537: $? = 0 configure:21537: result: yes configure:21537: checking errno.h presence configure:21537: gcc -E -I/usr/local/include conftest.c configure:21537: $? = 0 configure:21537: result: yes configure:21537: checking for errno.h configure:21537: result: yes configure:21537: checking for inttypes.h configure:21537: result: yes configure:21537: checking limits.h usability configure:21537: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21537: $? = 0 configure:21537: result: yes configure:21537: checking limits.h presence configure:21537: gcc -E -I/usr/local/include conftest.c configure:21537: $? = 0 configure:21537: result: yes configure:21537: checking for limits.h configure:21537: result: yes configure:21537: checking locale.h usability configure:21537: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21537: $? = 0 configure:21537: result: yes configure:21537: checking locale.h presence configure:21537: gcc -E -I/usr/local/include conftest.c configure:21537: $? = 0 configure:21537: result: yes configure:21537: checking for locale.h configure:21537: result: yes configure:21537: checking stdarg.h usability configure:21537: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21537: $? = 0 configure:21537: result: yes configure:21537: checking stdarg.h presence configure:21537: gcc -E -I/usr/local/include conftest.c configure:21537: $? = 0 configure:21537: result: yes configure:21537: checking for stdarg.h configure:21537: result: yes configure:21537: checking stdbool.h usability configure:21537: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21537: $? = 0 configure:21537: result: yes configure:21537: checking stdbool.h presence configure:21537: gcc -E -I/usr/local/include conftest.c configure:21537: $? = 0 configure:21537: result: yes configure:21537: checking for stdbool.h configure:21537: result: yes configure:21537: checking for stdint.h configure:21537: result: yes configure:21537: checking for string.h configure:21537: result: yes configure:21550: checking whether setjmp.h is POSIX.1 compatible configure:21568: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21568: $? = 0 configure:21575: result: yes configure:21577: checking whether sigsetjmp is declared configure:21577: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21577: $? = 0 configure:21577: result: yes configure:21588: checking whether siglongjmp is declared configure:21588: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21588: $? = 0 configure:21588: result: yes configure:21612: checking for GNU C library with version >= 2 configure:21635: result: yes configure:21646: checking return type of signal handlers configure:21664: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c: In function 'main': conftest.c:86: error: void value not ignored as it ought to be configure:21664: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | /* end confdefs.h. */ | #include | #include | | int | main () | { | return *(signal (0, 0)) (0) == 1; | ; | return 0; | } configure:21671: result: void configure:21680: checking for uint64_t configure:21680: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21680: $? = 0 configure:21680: result: yes configure:21694: checking for int64_t configure:21694: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21694: $? = 0 configure:21694: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c: In function 'main': conftest.c:117: error: expected expression before ')' token configure:21694: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((int64_t))) | return 0; | ; | return 0; | } configure:21694: result: yes configure:21703: checking for int_fast64_t configure:21703: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21703: $? = 0 configure:21703: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c: In function 'main': conftest.c:118: error: expected expression before ')' token configure:21703: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((int_fast64_t))) | return 0; | ; | return 0; | } configure:21703: result: yes configure:21713: checking for pid_t configure:21713: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21713: $? = 0 configure:21713: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c: In function 'main': conftest.c:119: error: expected expression before ')' token configure:21713: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((pid_t))) | return 0; | ; | return 0; | } configure:21713: result: yes configure:21724: checking for size_t configure:21724: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21724: $? = 0 configure:21724: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c: In function 'main': conftest.c:119: error: expected expression before ')' token configure:21724: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((size_t))) | return 0; | ; | return 0; | } configure:21724: result: yes configure:21735: checking whether SIZE_MAX is declared configure:21768: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:21768: $? = 0 configure:21768: ./conftest configure:21768: $? = 0 configure:21778: result: yes configure:21786: checking for blkcnt_t configure:21786: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21786: $? = 0 configure:21786: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c: In function 'main': conftest.c:120: error: expected expression before ')' token configure:21786: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((blkcnt_t))) | return 0; | ; | return 0; | } configure:21786: result: yes configure:21798: checking for type of socket length configure:21824: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21824: $? = 0 configure:21844: result: socklen_t * configure:21853: checking for stack_t configure:21853: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21853: $? = 0 configure:21853: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c: In function 'main': conftest.c:90: error: expected expression before ')' token configure:21853: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | /* end confdefs.h. */ | #include | | int | main () | { | if (sizeof ((stack_t))) | return 0; | ; | return 0; | } configure:21853: result: yes configure:21869: checking for intptr_t configure:21869: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21869: $? = 0 configure:21869: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c: In function 'main': conftest.c:96: error: expected expression before ')' token configure:21869: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | /* end confdefs.h. */ | #ifdef HAVE_INTTYPES_H | #include | #endif | #ifdef HAVE_STDINT_H | #include | #endif | | int | main () | { | if (sizeof ((intptr_t))) | return 0; | ; | return 0; | } configure:21869: result: yes configure:21884: checking for uintptr_t configure:21884: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21884: $? = 0 configure:21884: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c: In function 'main': conftest.c:97: error: expected expression before ')' token configure:21884: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | /* end confdefs.h. */ | #ifdef HAVE_INTTYPES_H | #include | #endif | #ifdef HAVE_STDINT_H | #include | #endif | | int | main () | { | if (sizeof ((uintptr_t))) | return 0; | ; | return 0; | } configure:21884: result: yes configure:21907: checking whether byte ordering is bigendian configure:21930: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21930: $? = 0 configure:21948: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c: In function 'main': conftest.c:95: error: 'not' undeclared (first use in this function) conftest.c:95: error: (Each undeclared identifier is reported only once conftest.c:95: error: for each function it appears in.) conftest.c:95: error: expected ';' before 'big' configure:21948: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | /* end confdefs.h. */ | #include | #include | | int | main () | { | #if BYTE_ORDER != BIG_ENDIAN | not big endian | #endif | | ; | return 0; | } configure:22022: result: no configure:22036: checking for an ANSI C-conforming const configure:22102: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:22102: $? = 0 configure:22109: result: yes configure:22121: checking for gcc option to accept ISO C99 configure:22270: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c:138: error: expected ';', ',' or ')' before 'text' conftest.c: In function 'main': conftest.c:192: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'newvar' conftest.c:192: error: 'newvar' undeclared (first use in this function) conftest.c:192: error: (Each undeclared identifier is reported only once conftest.c:192: error: for each function it appears in.) conftest.c:202: error: 'for' loop initial declarations are only allowed in C99 mode conftest.c:202: note: use option -std=c99 or -std=gnu99 to compile your code configure:22270: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | /* end confdefs.h. */ | #include | #include | #include | #include | #include | | // Check varargs macros. These examples are taken from C99 6.10.3.5. | #define debug(...) fprintf (stderr, __VA_ARGS__) | #define showlist(...) puts (#__VA_ARGS__) | #define report(test,...) ((test) ? puts (#test) : printf (__VA_ARGS__)) | static void | test_varargs_macros (void) | { | int x = 1234; | int y = 5678; | debug ("Flag"); | debug ("X = %d\n", x); | showlist (The first, second, and third items.); | report (x>y, "x is %d but y is %d", x, y); | } | | // Check long long types. | #define BIG64 18446744073709551615ull | #define BIG32 4294967295ul | #define BIG_OK (BIG64 / BIG32 == 4294967297ull && BIG64 % BIG32 == 0) | #if !BIG_OK | your preprocessor is broken; | #endif | #if BIG_OK | #else | your preprocessor is broken; | #endif | static long long int bignum = -9223372036854775807LL; | static unsigned long long int ubignum = BIG64; | | struct incomplete_array | { | int datasize; | double data[]; | }; | | struct named_init { | int number; | const wchar_t *name; | double average; | }; | | typedef const char *ccp; | | static inline int | test_restrict (ccp restrict text) | { | // See if C++-style comments work. | // Iterate through items via the restricted pointer. | // Also check for declarations in for loops. | for (unsigned int i = 0; *(text+i) != '\0'; ++i) | continue; | return 0; | } | | // Check varargs and va_copy. | static void | test_varargs (const char *format, ...) | { | va_list args; | va_start (args, format); | va_list args_copy; | va_copy (args_copy, args); | | const char *str; | int number; | float fnumber; | | while (*format) | { | switch (*format++) | { | case 's': // string | str = va_arg (args_copy, const char *); | break; | case 'd': // int | number = va_arg (args_copy, int); | break; | case 'f': // float | fnumber = va_arg (args_copy, double); | break; | default: | break; | } | } | va_end (args_copy); | va_end (args); | } | | int | main () | { | | // Check bool. | _Bool success = false; | | // Check restrict. | if (test_restrict ("String literal") == 0) | success = true; | char *restrict newvar = "Another string"; | | // Check varargs. | test_varargs ("s, d' f .", "string", 65, 34.234); | test_varargs_macros (); | | // Check flexible array members. | struct incomplete_array *ia = | malloc (sizeof (struct incomplete_array) + (sizeof (double) * 10)); | ia->datasize = 10; | for (int i = 0; i < ia->datasize; ++i) | ia->data[i] = i * 1.234; | | // Check named initializers. | struct named_init ni = { | .number = 34, | .name = L"Test wide string", | .average = 543.34343, | }; | | ni.number = 58; | | int dynamic_array[ni.number]; | dynamic_array[ni.number - 1] = 543; | | // work around unused variable warnings | return (!success || bignum == 0LL || ubignum == 0uLL || newvar[0] == 'x' | || dynamic_array[ni.number - 1] != 543); | | ; | return 0; | } configure:22270: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:22270: $? = 0 configure:22290: result: -std=gnu99 configure:22391: checking for gcc -std=gnu99 option to accept ISO Standard C configure:22405: result: -std=gnu99 configure:22409: checking for inline configure:22424: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:22424: $? = 0 configure:22431: result: inline configure:22447: checking size of int configure:22452: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:22452: $? = 0 configure:22452: ./conftest configure:22452: $? = 0 configure:22466: result: 4 configure:22488: checking size of long configure:22493: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:22493: $? = 0 configure:22493: ./conftest configure:22493: $? = 0 configure:22507: result: 8 configure:22521: checking size of long long configure:22526: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:22526: $? = 0 configure:22526: ./conftest configure:22526: $? = 0 configure:22540: result: 8 configure:22554: checking size of double configure:22559: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:22559: $? = 0 configure:22559: ./conftest configure:22559: $? = 0 configure:22573: result: 8 configure:22587: checking size of size_t configure:22592: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:22592: $? = 0 configure:22592: ./conftest configure:22592: $? = 0 configure:22606: result: 8 configure:22636: checking size of long double configure:22641: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:22641: $? = 0 configure:22641: ./conftest configure:22641: $? = 0 configure:22655: result: 16 configure:22671: checking whether we can compute C Make dependencies configure:22709: result: yes, using $(CC) -MM configure:22733: checking whether gcc -std=gnu99 supports -c -o FILE.lo configure:22743: gcc -std=gnu99 -g -O2 -c conftest.c -o TMP/conftest.lo 1>&5 configure:22746: $? = 0 configure:22749: gcc -std=gnu99 -g -O2 -c conftest.c -o TMP/conftest.lo 1>&5 configure:22752: $? = 0 configure:22760: result: yes configure:22789: checking for gcc -std=gnu99 option to support OpenMP configure:22804: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 conftest.c:99: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'me' In file included from conftest.c:101: /usr/lib/gcc/x86_64-linux-gnu/4.4.5/include/omp.h:76: error: expected ')' before '*' token /usr/lib/gcc/x86_64-linux-gnu/4.4.5/include/omp.h:77: error: expected ')' before '*' token /usr/lib/gcc/x86_64-linux-gnu/4.4.5/include/omp.h:78: error: expected ')' before '*' token /usr/lib/gcc/x86_64-linux-gnu/4.4.5/include/omp.h:79: error: expected ')' before '*' token /usr/lib/gcc/x86_64-linux-gnu/4.4.5/include/omp.h:80: error: expected ')' before '*' token configure:22804: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | /* end confdefs.h. */ | | #ifndef _OPENMP | choke me | #endif | #include | int main () { return omp_get_num_threads (); } | configure:22822: gcc -std=gnu99 -o conftest -g -O2 -fopenmp -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:22822: $? = 0 configure:22836: result: -fopenmp configure:22867: checking how to get verbose linking output from gfortran configure:22877: gfortran -c -g -O2 conftest.f >&5 configure:22877: $? = 0 configure:22895: gfortran -o conftest -g -O2 -v -L/usr/local/lib64 conftest.f Using built-in specs. Target: x86_64-linux-gnu Thread model: posix gcc version 4.4.5 (Ubuntu/Linaro 4.4.4-14ubuntu5) /usr/lib/gcc/x86_64-linux-gnu/4.4.5/f951 conftest.f -ffixed-form -quiet -dumpbase conftest.f -mtune=generic -auxbase conftest -g -O2 -version -fintrinsic-modules-path /usr/lib/gcc/x86_64-linux-gnu/4.4.5/finclude -o /tmp/ccGne1U5.s GNU Fortran (Ubuntu/Linaro 4.4.4-14ubuntu5) version 4.4.5 (x86_64-linux-gnu) compiled by GNU C version 4.4.5, GMP version 4.3.2, MPFR version 3.0.0-p3. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 as -V -Qy -o /tmp/ccTzakjH.o /tmp/ccGne1U5.s GNU assembler version 2.20.51 (x86_64-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.20.51-system.20100908 /usr/lib/gcc/x86_64-linux-gnu/4.4.5/collect2 --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o conftest -z relro /usr/lib/gcc/x86_64-linux-gnu/4.4.5/../../../../lib/crt1.o /usr/lib/gcc/x86_64-linux-gnu/4.4.5/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.4.5/crtbegin.o -L/usr/local/lib64 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.5 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.5 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.5/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.5/../../.. -L/usr/lib/x86_64-linux-gnu /tmp/ccTzakjH.o -lgfortranbegin -lgfortran -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/4.4.5/crtend.o /usr/lib/gcc/x86_64-linux-gnu/4.4.5/../../../../lib/crtn.o configure:22978: result: -v configure:22980: checking for Fortran 77 libraries of gfortran configure:23003: gfortran -o conftest -g -O2 -v -L/usr/local/lib64 conftest.f Using built-in specs. Target: x86_64-linux-gnu Thread model: posix gcc version 4.4.5 (Ubuntu/Linaro 4.4.4-14ubuntu5) /usr/lib/gcc/x86_64-linux-gnu/4.4.5/f951 conftest.f -ffixed-form -quiet -dumpbase conftest.f -mtune=generic -auxbase conftest -g -O2 -version -fintrinsic-modules-path /usr/lib/gcc/x86_64-linux-gnu/4.4.5/finclude -o /tmp/ccf0gNc8.s GNU Fortran (Ubuntu/Linaro 4.4.4-14ubuntu5) version 4.4.5 (x86_64-linux-gnu) compiled by GNU C version 4.4.5, GMP version 4.3.2, MPFR version 3.0.0-p3. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 as -V -Qy -o /tmp/ccF04eIJ.o /tmp/ccf0gNc8.s GNU assembler version 2.20.51 (x86_64-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.20.51-system.20100908 /usr/lib/gcc/x86_64-linux-gnu/4.4.5/collect2 --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o conftest -z relro /usr/lib/gcc/x86_64-linux-gnu/4.4.5/../../../../lib/crt1.o /usr/lib/gcc/x86_64-linux-gnu/4.4.5/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.4.5/crtbegin.o -L/usr/local/lib64 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.5 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.5 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.5/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.5/../../.. -L/usr/lib/x86_64-linux-gnu /tmp/ccF04eIJ.o -lgfortranbegin -lgfortran -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/4.4.5/crtend.o /usr/lib/gcc/x86_64-linux-gnu/4.4.5/../../../../lib/crtn.o configure:23199: result: -L/usr/local/lib64 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.5 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.5/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.5/../../.. -L/usr/lib/x86_64-linux-gnu -lgfortranbegin -lgfortran -lm configure:23217: checking how to get verbose linking output from gcc -std=gnu99 configure:23233: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:23233: $? = 0 configure:23255: gcc -std=gnu99 -o conftest -g -O2 -v -I/usr/local/include -L/usr/local/lib64 conftest.c >&5 Using built-in specs. Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 4.4.4-14ubuntu5' --with-bugurl=file:///usr/share/doc/gcc-4.4/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.4 --enable-shared --enable-multiarch --enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.4 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-objc-gc --disable-werror --with-arch-32=i686 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.4.5 (Ubuntu/Linaro 4.4.4-14ubuntu5) COLLECT_GCC_OPTIONS='-std=gnu99' '-o' 'conftest' '-g' '-O2' '-v' '-I/usr/local/include' '-L/usr/local/lib64' '-mtune=generic' /usr/lib/gcc/x86_64-linux-gnu/4.4.5/cc1 -quiet -v -I/usr/local/include conftest.c -D_FORTIFY_SOURCE=2 -quiet -dumpbase conftest.c -mtune=generic -auxbase conftest -g -O2 -std=gnu99 -version -fstack-protector -o /tmp/ccexURR9.s ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/4.4.5/../../../../x86_64-linux-gnu/include" ignoring nonexistent directory "/usr/include/x86_64-linux-gnu" ignoring duplicate directory "/usr/local/include" as it is a non-system directory that duplicates a system directory #include "..." search starts here: #include <...> search starts here: /usr/local/include /usr/lib/gcc/x86_64-linux-gnu/4.4.5/include /usr/lib/gcc/x86_64-linux-gnu/4.4.5/include-fixed /usr/include End of search list. GNU C (Ubuntu/Linaro 4.4.4-14ubuntu5) version 4.4.5 (x86_64-linux-gnu) compiled by GNU C version 4.4.5, GMP version 4.3.2, MPFR version 3.0.0-p3. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 Compiler executable checksum: 735b16ccef1a2bfd839f020cdb4a5e95 COLLECT_GCC_OPTIONS='-std=gnu99' '-o' 'conftest' '-g' '-O2' '-v' '-I/usr/local/include' '-L/usr/local/lib64' '-mtune=generic' as -V -Qy -o /tmp/cc9PujyL.o /tmp/ccexURR9.s GNU assembler version 2.20.51 (x86_64-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.20.51-system.20100908 COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.4.5/:/usr/lib/gcc/x86_64-linux-gnu/4.4.5/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.4.5/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.4.5/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.4.5/:/usr/lib/gcc/x86_64-linux-gnu/4.4.5/:/usr/lib/gcc/x86_64-linux-gnu/4.4.5/../../../../lib/:/lib/../lib/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.4.5/../../../:/lib/:/usr/lib/:/usr/lib/x86_64-linux-gnu/ COLLECT_GCC_OPTIONS='-std=gnu99' '-o' 'conftest' '-g' '-O2' '-v' '-I/usr/local/include' '-L/usr/local/lib64' '-mtune=generic' /usr/lib/gcc/x86_64-linux-gnu/4.4.5/collect2 --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o conftest -z relro /usr/lib/gcc/x86_64-linux-gnu/4.4.5/../../../../lib/crt1.o /usr/lib/gcc/x86_64-linux-gnu/4.4.5/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.4.5/crtbegin.o -L/usr/local/lib64 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.5 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.5 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.5/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.5/../../.. -L/usr/lib/x86_64-linux-gnu /tmp/cc9PujyL.o -lgcc --as-needed -lgcc_s --no-as-needed -lc -lgcc --as-needed -lgcc_s --no-as-needed /usr/lib/gcc/x86_64-linux-gnu/4.4.5/crtend.o /usr/lib/gcc/x86_64-linux-gnu/4.4.5/../../../../lib/crtn.o configure:23301: result: -v configure:23303: checking for C libraries of gcc -std=gnu99 configure:23330: gcc -std=gnu99 -o conftest -g -O2 -v -I/usr/local/include -L/usr/local/lib64 conftest.c >&5 Using built-in specs. Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 4.4.4-14ubuntu5' --with-bugurl=file:///usr/share/doc/gcc-4.4/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.4 --enable-shared --enable-multiarch --enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.4 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-objc-gc --disable-werror --with-arch-32=i686 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.4.5 (Ubuntu/Linaro 4.4.4-14ubuntu5) COLLECT_GCC_OPTIONS='-std=gnu99' '-o' 'conftest' '-g' '-O2' '-v' '-I/usr/local/include' '-L/usr/local/lib64' '-mtune=generic' /usr/lib/gcc/x86_64-linux-gnu/4.4.5/cc1 -quiet -v -I/usr/local/include conftest.c -D_FORTIFY_SOURCE=2 -quiet -dumpbase conftest.c -mtune=generic -auxbase conftest -g -O2 -std=gnu99 -version -fstack-protector -o /tmp/cc5zYNCf.s ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/4.4.5/../../../../x86_64-linux-gnu/include" ignoring nonexistent directory "/usr/include/x86_64-linux-gnu" ignoring duplicate directory "/usr/local/include" as it is a non-system directory that duplicates a system directory #include "..." search starts here: #include <...> search starts here: /usr/local/include /usr/lib/gcc/x86_64-linux-gnu/4.4.5/include /usr/lib/gcc/x86_64-linux-gnu/4.4.5/include-fixed /usr/include End of search list. GNU C (Ubuntu/Linaro 4.4.4-14ubuntu5) version 4.4.5 (x86_64-linux-gnu) compiled by GNU C version 4.4.5, GMP version 4.3.2, MPFR version 3.0.0-p3. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 Compiler executable checksum: 735b16ccef1a2bfd839f020cdb4a5e95 COLLECT_GCC_OPTIONS='-std=gnu99' '-o' 'conftest' '-g' '-O2' '-v' '-I/usr/local/include' '-L/usr/local/lib64' '-mtune=generic' as -V -Qy -o /tmp/ccvB2mqR.o /tmp/cc5zYNCf.s GNU assembler version 2.20.51 (x86_64-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.20.51-system.20100908 COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.4.5/:/usr/lib/gcc/x86_64-linux-gnu/4.4.5/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.4.5/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.4.5/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.4.5/:/usr/lib/gcc/x86_64-linux-gnu/4.4.5/:/usr/lib/gcc/x86_64-linux-gnu/4.4.5/../../../../lib/:/lib/../lib/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.4.5/../../../:/lib/:/usr/lib/:/usr/lib/x86_64-linux-gnu/ COLLECT_GCC_OPTIONS='-std=gnu99' '-o' 'conftest' '-g' '-O2' '-v' '-I/usr/local/include' '-L/usr/local/lib64' '-mtune=generic' /usr/lib/gcc/x86_64-linux-gnu/4.4.5/collect2 --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o conftest -z relro /usr/lib/gcc/x86_64-linux-gnu/4.4.5/../../../../lib/crt1.o /usr/lib/gcc/x86_64-linux-gnu/4.4.5/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.4.5/crtbegin.o -L/usr/local/lib64 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.5 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.5 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.5/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.5/../../.. -L/usr/lib/x86_64-linux-gnu /tmp/ccvB2mqR.o -lgcc --as-needed -lgcc_s --no-as-needed -lc -lgcc --as-needed -lgcc_s --no-as-needed /usr/lib/gcc/x86_64-linux-gnu/4.4.5/crtend.o /usr/lib/gcc/x86_64-linux-gnu/4.4.5/../../../../lib/crtn.o configure:23481: result: -L/usr/local/lib64 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.5 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.5/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.5/../../.. -L/usr/lib/x86_64-linux-gnu -lgcc_s configure:23616: checking for dummy main to link with Fortran 77 libraries configure:23650: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm -lgfortran -lm >&5 configure:23650: $? = 0 configure:23695: result: none configure:23728: checking for Fortran 77 name-mangling scheme configure:23741: gfortran -c -g -O2 conftest.f >&5 configure:23741: $? = 0 configure:23782: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c cfortran_test.o -ldl -lm -lgfortran -lm >&5 /tmp/ccjiM2s1.o: In function `main': /data/bin/install_R/R-3.1.1/build/conftest.c:116: undefined reference to `foobar' collect2: ld returned 1 exit status configure:23782: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char foobar (); | #ifdef F77_DUMMY_MAIN | | # ifdef __cplusplus | extern "C" | # endif | int F77_DUMMY_MAIN() { return 1; } | | #endif | int | main () | { | return foobar (); | ; | return 0; | } configure:23782: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c cfortran_test.o -ldl -lm -lgfortran -lm >&5 configure:23782: $? = 0 configure:23840: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c cfortran_test.o -ldl -lm -lgfortran -lm >&5 configure:23840: $? = 0 configure:23882: result: lower case, underscore, no extra underscore configure:23959: checking whether gfortran appends underscores to external names configure:23975: result: yes configure:23987: checking whether gfortran appends extra underscores to external names configure:24003: result: no configure:24017: checking whether mixed C/Fortran code can be run configure:24075: result: yes configure:24089: checking whether gfortran and gcc -std=gnu99 agree on int and double configure:24167: result: yes configure:24181: checking whether gfortran and gcc -std=gnu99 agree on double complex configure:24257: result: yes configure:24292: checking for gfortran option to support OpenMP configure:24307: gfortran -o conftest -g -O2 -L/usr/local/lib64 conftest.f -ldl -lm >&5 conftest.f:5.9: tid = 42 1 Error: Symbol 'tid' at (1) has no IMPLICIT type configure:24307: $? = 1 configure: failed program was: | | program main | implicit none | !$ integer tid | tid = 42 | call omp_set_num_threads(2) | end | configure:24325: gfortran -o conftest -g -O2 -fopenmp -L/usr/local/lib64 conftest.f -ldl -lm >&5 configure:24325: $? = 0 configure:24339: result: -fopenmp configure:24361: checking whether g++ accepts -M for generating dependencies configure:24376: result: yes configure:24421: checking for g++ option to support OpenMP configure:24436: g++ -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.cpp -ldl -lm >&5 conftest.cpp:103: error: 'choke' does not name a type In file included from conftest.cpp:105: /usr/lib/gcc/x86_64-linux-gnu/4.4.5/include/omp.h:38: error: expected constructor, destructor, or type conversion before ';' token /usr/lib/gcc/x86_64-linux-gnu/4.4.5/include/omp.h:76: error: variable or field 'omp_init_lock' declared void /usr/lib/gcc/x86_64-linux-gnu/4.4.5/include/omp.h:76: error: 'omp_lock_t' was not declared in this scope /usr/lib/gcc/x86_64-linux-gnu/4.4.5/include/omp.h:76: error: expected primary-expression before ')' token /usr/lib/gcc/x86_64-linux-gnu/4.4.5/include/omp.h:77: error: variable or field 'omp_destroy_lock' declared void /usr/lib/gcc/x86_64-linux-gnu/4.4.5/include/omp.h:77: error: 'omp_lock_t' was not declared in this scope /usr/lib/gcc/x86_64-linux-gnu/4.4.5/include/omp.h:77: error: expected primary-expression before ')' token /usr/lib/gcc/x86_64-linux-gnu/4.4.5/include/omp.h:78: error: variable or field 'omp_set_lock' declared void /usr/lib/gcc/x86_64-linux-gnu/4.4.5/include/omp.h:78: error: 'omp_lock_t' was not declared in this scope /usr/lib/gcc/x86_64-linux-gnu/4.4.5/include/omp.h:78: error: expected primary-expression before ')' token /usr/lib/gcc/x86_64-linux-gnu/4.4.5/include/omp.h:79: error: variable or field 'omp_unset_lock' declared void /usr/lib/gcc/x86_64-linux-gnu/4.4.5/include/omp.h:79: error: 'omp_lock_t' was not declared in this scope /usr/lib/gcc/x86_64-linux-gnu/4.4.5/include/omp.h:79: error: expected primary-expression before ')' token /usr/lib/gcc/x86_64-linux-gnu/4.4.5/include/omp.h:80: error: 'omp_lock_t' was not declared in this scope /usr/lib/gcc/x86_64-linux-gnu/4.4.5/include/omp.h:80: error: expected primary-expression before ')' token /usr/lib/gcc/x86_64-linux-gnu/4.4.5/include/omp.h:80: error: expected ',' or ';' before 'throw' configure:24436: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | /* end confdefs.h. */ | | #ifndef _OPENMP | choke me | #endif | #include | int main () { return omp_get_num_threads (); } | configure:24454: g++ -o conftest -g -O2 -fopenmp -I/usr/local/include -L/usr/local/lib64 conftest.cpp -ldl -lm >&5 configure:24454: $? = 0 configure:24468: result: -fopenmp configure:24488: checking whether we can compute ObjC Make dependencies configure:24504: result: no configure:25088: checking whether C runtime needs -D__NO_MATH_INLINES configure:25115: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 conftest.c: In function 'main': conftest.c:109: warning: implicit declaration of function 'exit' conftest.c:109: warning: incompatible implicit declaration of built-in function 'exit' configure:25115: $? = 0 configure:25115: ./conftest configure:25115: $? = 0 configure:25125: result: no configure:26173: checking for xmkmf configure:26206: result: no configure:26828: checking whether g++ supports C++11 features by default configure:26854: g++ -c -g -O2 -fpic -I/usr/local/include conftest.cpp >&5 conftest.cpp:106: error: expected identifier before 'sizeof' conftest.cpp:106: error: expected ',' or '...' before 'sizeof' conftest.cpp:106: error: ISO C++ forbids declaration of 'static_assert' with no type conftest.cpp:109: error: '>>' should be '> >' within a nested template argument list conftest.cpp:112: error: expected constructor, destructor, or type conversion before '(' token conftest.cpp:116: error: expected unqualified-id before '&&' token conftest.cpp:118: error: ISO C++ forbids declaration of 'd' with no type conftest.cpp:118: error: top-level declaration of 'd' specifies 'auto' configure:26854: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | /* end confdefs.h. */ | | template | struct check | { | static_assert(sizeof(int) <= sizeof(T), "not big enough"); | }; | | typedef check> right_angle_brackets; | | int a; | decltype(a) b; | | typedef check check_type; | check_type c; | check_type&& cr = static_cast(c); | | auto d = a; | configure:26861: result: no configure:26872: checking whether g++ supports C++11 features with -std=c++11 configure:26900: g++ -c -g -O2 -fpic -std=c++11 -I/usr/local/include conftest.cpp >&5 cc1plus: error: unrecognized command line option "-std=c++11" configure:26900: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | /* end confdefs.h. */ | | template | struct check | { | static_assert(sizeof(int) <= sizeof(T), "not big enough"); | }; | | typedef check> right_angle_brackets; | | int a; | decltype(a) b; | | typedef check check_type; | check_type c; | check_type&& cr = static_cast(c); | | auto d = a; | configure:26909: result: no configure:26872: checking whether g++ supports C++11 features with -std=c++0x configure:26900: g++ -c -g -O2 -fpic -std=c++0x -I/usr/local/include conftest.cpp >&5 configure:26900: $? = 0 configure:26909: result: yes configure:27068: checking for off_t configure:27068: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:27068: $? = 0 configure:27068: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c: In function 'main': conftest.c:140: error: expected expression before ')' token configure:27068: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((off_t))) | return 0; | ; | return 0; | } configure:27068: result: yes configure:27080: checking for working alloca.h configure:27105: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27105: $? = 0 configure:27113: result: yes configure:27121: checking for alloca configure:27166: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27166: $? = 0 configure:27174: result: yes configure:27280: checking whether alloca is declared configure:27280: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:27280: $? = 0 configure:27280: result: yes configure:27307: checking whether expm1 exists and is declared configure:27335: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27335: $? = 0 configure:27344: result: yes configure:27307: checking whether hypot exists and is declared configure:27335: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27335: $? = 0 configure:27344: result: yes configure:27307: checking whether log1p exists and is declared configure:27335: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27335: $? = 0 configure:27344: result: yes configure:27307: checking whether log1pl exists and is declared configure:27335: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27335: $? = 0 configure:27344: result: yes configure:27307: checking whether log2 exists and is declared configure:27335: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27335: $? = 0 configure:27344: result: yes configure:27307: checking whether log10 exists and is declared configure:27335: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27335: $? = 0 configure:27344: result: yes configure:27307: checking whether nearbyint exists and is declared configure:27335: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27335: $? = 0 configure:27344: result: yes configure:27307: checking whether nearbyintl exists and is declared configure:27335: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27335: $? = 0 configure:27344: result: yes configure:27307: checking whether powl exists and is declared configure:27335: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27335: $? = 0 configure:27344: result: yes configure:27307: checking whether rint exists and is declared configure:27335: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27335: $? = 0 configure:27344: result: yes configure:27307: checking whether rintl exists and is declared configure:27335: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27335: $? = 0 configure:27344: result: yes configure:27358: checking whether va_copy exists and is declared configure:27386: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27386: $? = 0 configure:27395: result: yes configure:27411: checking for isblank configure:27411: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 conftest.c:143: warning: conflicting types for built-in function 'isblank' configure:27411: $? = 0 configure:27411: result: yes configure:27424: checking sunmath.h usability configure:27424: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c:154: fatal error: sunmath.h: No such file or directory compilation terminated. configure:27424: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:27424: result: no configure:27424: checking sunmath.h presence configure:27424: gcc -E -I/usr/local/include conftest.c conftest.c:121: fatal error: sunmath.h: No such file or directory compilation terminated. configure:27424: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | /* end confdefs.h. */ | #include configure:27424: result: no configure:27424: checking for sunmath.h configure:27424: result: no configure:27434: checking for cospi in -lsunmath configure:27467: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lsunmath -ldl -lm >&5 /usr/bin/ld: cannot find -lsunmath collect2: ld returned 1 exit status configure:27467: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char cospi (); | #ifdef F77_DUMMY_MAIN | | # ifdef __cplusplus | extern "C" | # endif | int F77_DUMMY_MAIN() { return 1; } | | #endif | int | main () | { | return cospi (); | ; | return 0; | } configure:27476: result: no configure:27494: checking for atanpi configure:27494: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 /tmp/ccMDZTKL.o: In function `main': /data/bin/install_R/R-3.1.1/build/conftest.c:155: undefined reference to `atanpi' collect2: ld returned 1 exit status configure:27494: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | /* end confdefs.h. */ | /* Define atanpi to an innocuous variant, in case declares atanpi. | For example, HP-UX 11i declares gettimeofday. */ | #define atanpi innocuous_atanpi | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char atanpi (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef atanpi | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char atanpi (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_atanpi || defined __stub___atanpi | choke me | #endif | | int | main () | { | return atanpi (); | ; | return 0; | } configure:27494: result: no configure:27494: checking for atan2pi configure:27494: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 /tmp/ccGVPnfS.o: In function `main': /data/bin/install_R/R-3.1.1/build/conftest.c:155: undefined reference to `atan2pi' collect2: ld returned 1 exit status configure:27494: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | /* end confdefs.h. */ | /* Define atan2pi to an innocuous variant, in case declares atan2pi. | For example, HP-UX 11i declares gettimeofday. */ | #define atan2pi innocuous_atan2pi | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char atan2pi (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef atan2pi | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char atan2pi (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_atan2pi || defined __stub___atan2pi | choke me | #endif | | int | main () | { | return atan2pi (); | ; | return 0; | } configure:27494: result: no configure:27494: checking for cospi configure:27494: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 /tmp/ccBQVguT.o: In function `main': /data/bin/install_R/R-3.1.1/build/conftest.c:155: undefined reference to `cospi' collect2: ld returned 1 exit status configure:27494: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | /* end confdefs.h. */ | /* Define cospi to an innocuous variant, in case declares cospi. | For example, HP-UX 11i declares gettimeofday. */ | #define cospi innocuous_cospi | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char cospi (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef cospi | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char cospi (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_cospi || defined __stub___cospi | choke me | #endif | | int | main () | { | return cospi (); | ; | return 0; | } configure:27494: result: no configure:27494: checking for exp10 configure:27494: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 conftest.c:144: warning: conflicting types for built-in function 'exp10' configure:27494: $? = 0 configure:27494: result: yes configure:27494: checking for pown configure:27494: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 /tmp/ccLAMdn0.o: In function `main': /data/bin/install_R/R-3.1.1/build/conftest.c:156: undefined reference to `pown' collect2: ld returned 1 exit status configure:27494: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | /* end confdefs.h. */ | /* Define pown to an innocuous variant, in case declares pown. | For example, HP-UX 11i declares gettimeofday. */ | #define pown innocuous_pown | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char pown (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef pown | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char pown (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_pown || defined __stub___pown | choke me | #endif | | int | main () | { | return pown (); | ; | return 0; | } configure:27494: result: no configure:27494: checking for sinpi configure:27494: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 /tmp/ccSYgSG6.o: In function `main': /data/bin/install_R/R-3.1.1/build/conftest.c:156: undefined reference to `sinpi' collect2: ld returned 1 exit status configure:27494: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | /* end confdefs.h. */ | /* Define sinpi to an innocuous variant, in case declares sinpi. | For example, HP-UX 11i declares gettimeofday. */ | #define sinpi innocuous_sinpi | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char sinpi (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef sinpi | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char sinpi (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_sinpi || defined __stub___sinpi | choke me | #endif | | int | main () | { | return sinpi (); | ; | return 0; | } configure:27494: result: no configure:27494: checking for tanpi configure:27494: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 /tmp/ccc1Vvo8.o: In function `main': /data/bin/install_R/R-3.1.1/build/conftest.c:156: undefined reference to `tanpi' collect2: ld returned 1 exit status configure:27494: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | /* end confdefs.h. */ | /* Define tanpi to an innocuous variant, in case declares tanpi. | For example, HP-UX 11i declares gettimeofday. */ | #define tanpi innocuous_tanpi | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char tanpi (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef tanpi | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char tanpi (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_tanpi || defined __stub___tanpi | choke me | #endif | | int | main () | { | return tanpi (); | ; | return 0; | } configure:27494: result: no configure:27513: checking for fseeko configure:27513: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27513: $? = 0 configure:27513: result: yes configure:27513: checking for ftello configure:27513: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27513: $? = 0 configure:27513: result: yes configure:27513: checking for matherr configure:27513: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27513: $? = 0 configure:27513: result: yes configure:27527: checking whether fcntl exists and is declared configure:27555: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27555: $? = 0 configure:27564: result: yes configure:27577: checking whether getgrgid exists and is declared configure:27605: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27605: $? = 0 configure:27614: result: yes configure:27627: checking whether getpwuid exists and is declared configure:27655: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27655: $? = 0 configure:27664: result: yes configure:27677: checking whether kill exists and is declared configure:27705: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27705: $? = 0 configure:27714: result: yes configure:27677: checking whether sigaction exists and is declared configure:27705: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27705: $? = 0 configure:27714: result: yes configure:27677: checking whether sigaltstack exists and is declared configure:27705: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27705: $? = 0 configure:27714: result: yes configure:27677: checking whether sigemptyset exists and is declared configure:27705: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27705: $? = 0 configure:27714: result: yes configure:27727: checking whether fdopen exists and is declared configure:27755: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27755: $? = 0 configure:27764: result: yes configure:27727: checking whether popen exists and is declared configure:27755: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27755: $? = 0 configure:27764: result: yes configure:27781: checking whether setenv exists and is declared configure:27809: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27809: $? = 0 configure:27818: result: yes configure:27781: checking whether unsetenv exists and is declared configure:27809: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27809: $? = 0 configure:27818: result: yes configure:27831: checking whether getrlimit exists and is declared configure:27859: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27859: $? = 0 configure:27868: result: yes configure:27831: checking whether getrusage exists and is declared configure:27859: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27859: $? = 0 configure:27868: result: yes configure:27831: checking whether getpriority exists and is declared configure:27859: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27859: $? = 0 configure:27868: result: yes configure:27881: checking whether chmod exists and is declared configure:27909: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27909: $? = 0 configure:27918: result: yes configure:27881: checking whether mkfifo exists and is declared configure:27909: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27909: $? = 0 configure:27918: result: yes configure:27881: checking whether stat exists and is declared configure:27909: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27909: $? = 0 configure:27918: result: yes configure:27881: checking whether umask exists and is declared configure:27909: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27909: $? = 0 configure:27918: result: yes configure:27934: checking whether gettimeofday exists and is declared configure:27962: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27962: $? = 0 configure:27971: result: yes configure:27934: checking whether utimes exists and is declared configure:27962: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27962: $? = 0 configure:27971: result: yes configure:27984: checking whether times exists and is declared configure:28012: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:28012: $? = 0 configure:28021: result: yes configure:28034: checking whether gmtime_r exists and is declared configure:28062: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:28062: $? = 0 configure:28071: result: yes configure:28034: checking whether localtime_r exists and is declared configure:28062: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:28062: $? = 0 configure:28071: result: yes configure:28084: checking whether nl_langinfo exists and is declared configure:28112: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:28112: $? = 0 configure:28121: result: yes configure:28134: checking whether access exists and is declared configure:28164: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:28164: $? = 0 configure:28173: result: yes configure:28134: checking whether chdir exists and is declared configure:28164: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:28164: $? = 0 configure:28173: result: yes configure:28134: checking whether execv exists and is declared configure:28164: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:28164: $? = 0 configure:28173: result: yes configure:28134: checking whether ftruncate exists and is declared configure:28164: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:28164: $? = 0 configure:28173: result: yes configure:28134: checking whether getcwd exists and is declared configure:28164: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:28164: $? = 0 configure:28173: result: yes configure:28134: checking whether geteuid exists and is declared configure:28164: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:28164: $? = 0 configure:28173: result: yes configure:28134: checking whether getuid exists and is declared configure:28164: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:28164: $? = 0 configure:28173: result: yes configure:28134: checking whether link exists and is declared configure:28164: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:28164: $? = 0 configure:28173: result: yes configure:28134: checking whether readlink exists and is declared configure:28164: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:28164: $? = 0 configure:28173: result: yes configure:28134: checking whether symlink exists and is declared configure:28164: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:28164: $? = 0 configure:28173: result: yes configure:28134: checking whether sysconf exists and is declared configure:28164: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:28164: $? = 0 configure:28173: result: yes configure:28187: checking whether sched_setaffinity exists and is declared configure:28215: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:28215: $? = 0 configure:28224: result: yes configure:28187: checking whether sched_getaffinity exists and is declared configure:28215: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:28215: $? = 0 configure:28224: result: yes configure:28238: checking whether utime exists and is declared configure:28266: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:28266: $? = 0 configure:28275: result: yes configure:28290: checking for clock_gettime in -lrt configure:28323: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:28323: $? = 0 configure:28332: result: yes configure:28346: checking whether clock_gettime exists and is declared configure:28374: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:28374: $? = 0 configure:28383: result: yes configure:28346: checking whether timespec_get exists and is declared configure:28374: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 conftest.c: In function 'main': conftest.c:179: error: 'timespec_get' undeclared (first use in this function) conftest.c:179: error: (Each undeclared identifier is reported only once conftest.c:179: error: for each function it appears in.) configure:28374: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_MATHERR 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | /* end confdefs.h. */ | #include | | #ifdef F77_DUMMY_MAIN | | # ifdef __cplusplus | extern "C" | # endif | int F77_DUMMY_MAIN() { return 1; } | | #endif | int | main () | { | #ifndef timespec_get | char *p = (char *) timespec_get; | #endif | | ; | return 0; | } configure:28383: result: no configure:28398: checking for putenv configure:28398: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:28398: $? = 0 configure:28398: result: yes configure:28407: checking whether putenv is declared configure:28407: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:28407: $? = 0 configure:28407: result: yes configure:28422: checking for vasprintf configure:28422: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:28422: $? = 0 configure:28422: result: yes configure:28431: checking whether vasprintf is declared configure:28431: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:28431: $? = 0 configure:28431: result: yes configure:28446: checking for mempcpy configure:28446: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 conftest.c:192: warning: conflicting types for built-in function 'mempcpy' configure:28446: $? = 0 configure:28446: result: yes configure:28459: checking for realpath configure:28459: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:28459: $? = 0 configure:28459: result: yes configure:28468: checking whether realpath is declared configure:28468: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:28468: $? = 0 configure:28468: result: yes configure:28488: checking whether glob exists and is declared configure:28518: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:28518: $? = 0 configure:28527: result: yes configure:28579: checking for isnan configure:28579: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 conftest.c:197: warning: conflicting types for built-in function 'isnan' configure:28579: $? = 0 configure:28579: result: yes configure:28588: checking whether isfinite is declared configure:28588: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:28588: $? = 0 configure:28588: result: yes configure:28599: checking whether isnan is declared configure:28599: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:28599: $? = 0 configure:28599: result: yes configure:28611: checking whether you have IEEE 754 floating-point arithmetic configure:28623: result: yes configure:28636: checking whether putenv("FOO") can unset an environment variable configure:28666: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:28666: $? = 0 configure:28666: ./conftest configure:28666: $? = 0 configure:28676: result: yes configure:28686: checking whether putenv("FOO=") can unset an environment variable configure:28716: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:28716: $? = 0 configure:28716: ./conftest configure:28716: $? = 1 configure: program exited with status 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_MATHERR 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | /* end confdefs.h. */ | | #include "confdefs.h" | #include | #include | int main() | { | char *p; | #ifdef HAVE_PUTENV | putenv("R_TEST=testit"); | p = getenv("R_TEST"); | if(!p) exit(10); | if(strcmp(p, "testit")) exit(11); | putenv("R_TEST="); | p = getenv("R_TEST"); | if(!p) exit(0); | #endif | exit(1); | } | configure:28726: result: no configure:28741: checking for nl_langinfo and CODESET configure:28765: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:28765: $? = 0 configure:28774: result: yes configure:28811: checking for mkdtemp configure:28811: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:28811: $? = 0 configure:28811: result: yes configure:28824: checking for strdup configure:28824: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 conftest.c:204: warning: conflicting types for built-in function 'strdup' configure:28824: $? = 0 configure:28824: result: yes configure:28837: checking for strncasecmp configure:28837: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 conftest.c:205: warning: conflicting types for built-in function 'strncasecmp' configure:28837: $? = 0 configure:28837: result: yes configure:28852: checking whether mkdtemp is declared configure:28852: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:28852: $? = 0 configure:28852: result: yes configure:28862: checking whether strdup is declared configure:28862: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:28862: $? = 0 configure:28862: result: yes configure:28872: checking whether strncasecmp is declared configure:28872: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:28872: $? = 0 configure:28872: result: yes configure:28884: checking for library containing connect configure:28923: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:28923: $? = 0 configure:28940: result: none required configure:28949: checking for library containing gethostbyname configure:28988: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:28988: $? = 0 configure:29005: result: none required configure:29013: checking for library containing xdr_string configure:29052: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:29052: $? = 0 configure:29069: result: none required configure:29077: checking for __setfpucw configure:29077: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 /tmp/cc7X2pYw.o: In function `main': /data/bin/install_R/R-3.1.1/build/conftest.c:220: undefined reference to `__setfpucw' collect2: ld returned 1 exit status configure:29077: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_MATHERR 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | /* end confdefs.h. */ | /* Define __setfpucw to an innocuous variant, in case declares __setfpucw. | For example, HP-UX 11i declares gettimeofday. */ | #define __setfpucw innocuous___setfpucw | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char __setfpucw (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef __setfpucw | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char __setfpucw (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub___setfpucw || defined __stub_____setfpucw | choke me | #endif | | int | main () | { | return __setfpucw (); | ; | return 0; | } configure:29077: result: no configure:29120: checking for working calloc configure:29138: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:29138: $? = 0 configure:29138: ./conftest configure:29138: $? = 0 configure:29148: result: yes configure:29157: checking for working isfinite configure:29180: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:29180: $? = 0 configure:29180: ./conftest configure:29180: $? = 0 configure:29190: result: yes configure:29200: checking for working log1p configure:29241: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:29241: $? = 0 configure:29241: ./conftest configure:29241: $? = 0 configure:29251: result: yes configure:29263: checking whether ftell works correctly on files opened for append configure:29292: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 conftest.c:193: warning: return type defaults to 'int' conftest.c: In function 'main': conftest.c:203: warning: implicit declaration of function 'unlink' configure:29292: $? = 0 configure:29292: ./conftest configure:29292: $? = 0 configure:29302: result: yes configure:29311: checking for working sigaction configure:29340: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:29340: $? = 0 configure:29340: ./conftest configure:29340: $? = 0 configure:29350: result: yes configure:29358: checking whether mktime sets errno configure:29387: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:29387: $? = 0 configure:29387: ./conftest configure:29387: $? = 1 configure: program exited with status 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_MATHERR 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | #define HAVE_WORKING_CALLOC 1 | #define HAVE_WORKING_ISFINITE 1 | #define HAVE_WORKING_LOG1P 1 | #define HAVE_WORKING_FTELL 1 | #define HAVE_WORKING_SIGACTION 1 | /* end confdefs.h. */ | | #include | #include | #include | | int main() | { | struct tm tm; | /* It's hard to know what is an error, since mktime is allowed to | fix up times and there are 64-bit time_t about. | But this works for now (yes on Solaris, no on glibc). */ | tm.tm_year = 3000; tm.tm_mon = 0; tm.tm_mday = 0; | tm.tm_hour = 0; tm.tm_min = 0; tm.tm_sec = 0; tm.tm_isdst = -1; | errno = 0; | mktime(&tm); | exit(errno == 0); | } | configure:29397: result: no configure:29405: checking whether mktime works correctly outside 1902-2037 configure:29443: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 conftest.c:195: warning: return type defaults to 'int' configure:29443: $? = 0 configure:29443: ./conftest configure:29443: $? = 0 configure:29453: result: yes configure:29462: checking complex.h usability configure:29462: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:29462: $? = 0 configure:29462: result: yes configure:29462: checking complex.h presence configure:29462: gcc -E -I/usr/local/include conftest.c configure:29462: $? = 0 configure:29462: result: yes configure:29462: checking for complex.h configure:29462: result: yes configure:29471: checking for double complex configure:29471: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:29471: $? = 0 configure:29471: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c: In function 'main': conftest.c:197: error: expected expression before ')' token configure:29471: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_MATHERR 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | #define HAVE_WORKING_CALLOC 1 | #define HAVE_WORKING_ISFINITE 1 | #define HAVE_WORKING_LOG1P 1 | #define HAVE_WORKING_FTELL 1 | #define HAVE_WORKING_SIGACTION 1 | #define HAVE_WORKING_64BIT_MKTIME 1 | /* end confdefs.h. */ | #include | | int | main () | { | if (sizeof ((double complex))) | return 0; | ; | return 0; | } configure:29471: result: yes configure:29480: checking whether C99 double complex is supported configure:29482: result: yes configure:29491: checking whether cabs exists and is declared configure:29519: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:29519: $? = 0 configure:29528: result: yes configure:29491: checking whether carg exists and is declared configure:29519: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:29519: $? = 0 configure:29528: result: yes configure:29491: checking whether cexp exists and is declared configure:29519: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:29519: $? = 0 configure:29528: result: yes configure:29491: checking whether clog exists and is declared configure:29519: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:29519: $? = 0 configure:29528: result: yes configure:29491: checking whether csqrt exists and is declared configure:29519: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:29519: $? = 0 configure:29528: result: yes configure:29491: checking whether cpow exists and is declared configure:29519: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:29519: $? = 0 configure:29528: result: yes configure:29491: checking whether ccos exists and is declared configure:29519: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:29519: $? = 0 configure:29528: result: yes configure:29491: checking whether csin exists and is declared configure:29519: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:29519: $? = 0 configure:29528: result: yes configure:29491: checking whether ctan exists and is declared configure:29519: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:29519: $? = 0 configure:29528: result: yes configure:29491: checking whether cacos exists and is declared configure:29519: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:29519: $? = 0 configure:29528: result: yes configure:29491: checking whether casin exists and is declared configure:29519: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:29519: $? = 0 configure:29528: result: yes configure:29491: checking whether catan exists and is declared configure:29519: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:29519: $? = 0 configure:29528: result: yes configure:29491: checking whether ccosh exists and is declared configure:29519: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:29519: $? = 0 configure:29528: result: yes configure:29491: checking whether csinh exists and is declared configure:29519: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:29519: $? = 0 configure:29528: result: yes configure:29491: checking whether ctanh exists and is declared configure:29519: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:29519: $? = 0 configure:29528: result: yes configure:29541: checking whether 'struct tm' includes tm_zone configure:29559: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:29559: $? = 0 configure:29566: result: yes configure:29574: checking whether 'struct tm' includes tm_gmtoff configure:29592: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:29592: $? = 0 configure:29599: result: yes configure:29611: checking for cblas_cdotu_sub in vecLib framework configure:29645: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -framework vecLib -lrt -ldl -lm >&5 gcc: vecLib: No such file or directory cc1: error: unrecognized command line option "-framework" configure:29645: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_MATHERR 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | #define HAVE_WORKING_CALLOC 1 | #define HAVE_WORKING_ISFINITE 1 | #define HAVE_WORKING_LOG1P 1 | #define HAVE_WORKING_FTELL 1 | #define HAVE_WORKING_SIGACTION 1 | #define HAVE_WORKING_64BIT_MKTIME 1 | #define HAVE_CABS 1 | #define HAVE_CARG 1 | #define HAVE_CEXP 1 | #define HAVE_CLOG 1 | #define HAVE_CSQRT 1 | #define HAVE_CPOW 1 | #define HAVE_CCOS 1 | #define HAVE_CSIN 1 | #define HAVE_CTAN 1 | #define HAVE_CACOS 1 | #define HAVE_CASIN 1 | #define HAVE_CATAN 1 | #define HAVE_CCOSH 1 | #define HAVE_CSINH 1 | #define HAVE_CTANH 1 | #define HAVE_TM_ZONE 1 | #define HAVE_TM_GMTOFF 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char cblas_cdotu_sub (); | #ifdef F77_DUMMY_MAIN | | # ifdef __cplusplus | extern "C" | # endif | int F77_DUMMY_MAIN() { return 1; } | | #endif | int | main () | { | return cblas_cdotu_sub (); | ; | return 0; | } configure:29663: result: no configure:30793: checking iconv.h usability configure:30793: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:30793: $? = 0 configure:30793: result: yes configure:30793: checking iconv.h presence configure:30793: gcc -E -I/usr/local/include conftest.c configure:30793: $? = 0 configure:30793: result: yes configure:30793: checking for iconv.h configure:30793: result: yes configure:30805: checking for iconv configure:30836: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:30836: $? = 0 configure:30879: result: yes configure:30886: checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*" configure:30954: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:30954: $? = 0 configure:30954: ./conftest configure:30954: $? = 0 configure:30964: result: yes configure:30978: checking for iconvlist configure:31009: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 conftest.c: In function 'main': conftest.c:228: warning: implicit declaration of function 'iconvlist' /tmp/ccdU6ku7.o: In function `main': /data/bin/install_R/R-3.1.1/build/conftest.c:228: undefined reference to `iconvlist' collect2: ld returned 1 exit status configure:31009: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_MATHERR 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | #define HAVE_WORKING_CALLOC 1 | #define HAVE_WORKING_ISFINITE 1 | #define HAVE_WORKING_LOG1P 1 | #define HAVE_WORKING_FTELL 1 | #define HAVE_WORKING_SIGACTION 1 | #define HAVE_WORKING_64BIT_MKTIME 1 | #define HAVE_CABS 1 | #define HAVE_CARG 1 | #define HAVE_CEXP 1 | #define HAVE_CLOG 1 | #define HAVE_CSQRT 1 | #define HAVE_CPOW 1 | #define HAVE_CCOS 1 | #define HAVE_CSIN 1 | #define HAVE_CTAN 1 | #define HAVE_CACOS 1 | #define HAVE_CASIN 1 | #define HAVE_CATAN 1 | #define HAVE_CCOSH 1 | #define HAVE_CSINH 1 | #define HAVE_CTANH 1 | #define HAVE_TM_ZONE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_ICONV_H 1 | #define HAVE_ICONV 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_ICONV_H | #include | #endif | static int count_one (unsigned int namescount, char * *names, void *data) | {return 0;} | #ifdef F77_DUMMY_MAIN | | # ifdef __cplusplus | extern "C" | # endif | int F77_DUMMY_MAIN() { return 1; } | | #endif | int | main () | { | iconvlist(count_one, NULL); | ; | return 0; | } configure:31016: result: no configure:31052: checking for iconv configure:31082: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:31082: $? = 0 configure:31122: result: yes configure:31143: checking for iconv declaration configure:31180: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:31180: $? = 0 configure:31191: result: extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); configure:31209: checking wchar.h usability configure:31209: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:31209: $? = 0 configure:31209: result: yes configure:31209: checking wchar.h presence configure:31209: gcc -E -I/usr/local/include conftest.c configure:31209: $? = 0 configure:31209: result: yes configure:31209: checking for wchar.h configure:31209: result: yes configure:31209: checking wctype.h usability configure:31209: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:31209: $? = 0 configure:31209: result: yes configure:31209: checking wctype.h presence configure:31209: gcc -E -I/usr/local/include conftest.c configure:31209: $? = 0 configure:31209: result: yes configure:31209: checking for wctype.h configure:31209: result: yes configure:31232: checking whether mbrtowc exists and is declared configure:31260: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:31260: $? = 0 configure:31269: result: yes configure:31232: checking whether wcrtomb exists and is declared configure:31260: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:31260: $? = 0 configure:31269: result: yes configure:31232: checking whether wcscoll exists and is declared configure:31260: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:31260: $? = 0 configure:31269: result: yes configure:31232: checking whether wcsftime exists and is declared configure:31260: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:31260: $? = 0 configure:31269: result: yes configure:31232: checking whether wcstod exists and is declared configure:31260: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:31260: $? = 0 configure:31269: result: yes configure:31282: checking whether mbstowcs exists and is declared configure:31310: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:31310: $? = 0 configure:31319: result: yes configure:31282: checking whether wcstombs exists and is declared configure:31310: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:31310: $? = 0 configure:31319: result: yes configure:31332: checking whether wctrans exists and is declared configure:31361: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:31361: $? = 0 configure:31370: result: yes configure:31332: checking whether iswblank exists and is declared configure:31361: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:31361: $? = 0 configure:31370: result: yes configure:31332: checking whether wctype exists and is declared configure:31361: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:31361: $? = 0 configure:31370: result: yes configure:31332: checking whether iswctype exists and is declared configure:31361: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:31361: $? = 0 configure:31370: result: yes configure:31394: checking for wctrans_t configure:31394: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:31394: $? = 0 configure:31394: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c: In function 'main': conftest.c:232: error: expected expression before ')' token configure:31394: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_MATHERR 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | #define HAVE_WORKING_CALLOC 1 | #define HAVE_WORKING_ISFINITE 1 | #define HAVE_WORKING_LOG1P 1 | #define HAVE_WORKING_FTELL 1 | #define HAVE_WORKING_SIGACTION 1 | #define HAVE_WORKING_64BIT_MKTIME 1 | #define HAVE_CABS 1 | #define HAVE_CARG 1 | #define HAVE_CEXP 1 | #define HAVE_CLOG 1 | #define HAVE_CSQRT 1 | #define HAVE_CPOW 1 | #define HAVE_CCOS 1 | #define HAVE_CSIN 1 | #define HAVE_CTAN 1 | #define HAVE_CACOS 1 | #define HAVE_CASIN 1 | #define HAVE_CATAN 1 | #define HAVE_CCOSH 1 | #define HAVE_CSINH 1 | #define HAVE_CTANH 1 | #define HAVE_TM_ZONE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_ICONV_H 1 | #define HAVE_ICONV 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_WCHAR_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_MBRTOWC 1 | #define HAVE_WCRTOMB 1 | #define HAVE_WCSCOLL 1 | #define HAVE_WCSFTIME 1 | #define HAVE_WCSTOD 1 | #define HAVE_MBSTOWCS 1 | #define HAVE_WCSTOMBS 1 | #define HAVE_WCTRANS 1 | #define HAVE_ISWBLANK 1 | #define HAVE_WCTYPE 1 | #define HAVE_ISWCTYPE 1 | /* end confdefs.h. */ | #include | #include | | int | main () | { | if (sizeof ((wctrans_t))) | return 0; | ; | return 0; | } configure:31394: result: yes configure:31405: checking for mbstate_t configure:31405: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:31405: $? = 0 configure:31405: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c: In function 'main': conftest.c:233: error: expected expression before ')' token configure:31405: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_MATHERR 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | #define HAVE_WORKING_CALLOC 1 | #define HAVE_WORKING_ISFINITE 1 | #define HAVE_WORKING_LOG1P 1 | #define HAVE_WORKING_FTELL 1 | #define HAVE_WORKING_SIGACTION 1 | #define HAVE_WORKING_64BIT_MKTIME 1 | #define HAVE_CABS 1 | #define HAVE_CARG 1 | #define HAVE_CEXP 1 | #define HAVE_CLOG 1 | #define HAVE_CSQRT 1 | #define HAVE_CPOW 1 | #define HAVE_CCOS 1 | #define HAVE_CSIN 1 | #define HAVE_CTAN 1 | #define HAVE_CACOS 1 | #define HAVE_CASIN 1 | #define HAVE_CATAN 1 | #define HAVE_CCOSH 1 | #define HAVE_CSINH 1 | #define HAVE_CTANH 1 | #define HAVE_TM_ZONE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_ICONV_H 1 | #define HAVE_ICONV 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_WCHAR_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_MBRTOWC 1 | #define HAVE_WCRTOMB 1 | #define HAVE_WCSCOLL 1 | #define HAVE_WCSFTIME 1 | #define HAVE_WCSTOD 1 | #define HAVE_MBSTOWCS 1 | #define HAVE_WCSTOMBS 1 | #define HAVE_WCTRANS 1 | #define HAVE_ISWBLANK 1 | #define HAVE_WCTYPE 1 | #define HAVE_ISWCTYPE 1 | #define HAVE_WCTRANS_T 1 | /* end confdefs.h. */ | #include | #include | | int | main () | { | if (sizeof ((mbstate_t))) | return 0; | ; | return 0; | } configure:31405: result: yes configure:31431: checking for ICU configure:31466: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm -licuuc -licui18n >&5 conftest.c:229: fatal error: unicode/utypes.h: No such file or directory compilation terminated. configure:31466: $? = 1 configure: program exited with status 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_MATHERR 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | #define HAVE_WORKING_CALLOC 1 | #define HAVE_WORKING_ISFINITE 1 | #define HAVE_WORKING_LOG1P 1 | #define HAVE_WORKING_FTELL 1 | #define HAVE_WORKING_SIGACTION 1 | #define HAVE_WORKING_64BIT_MKTIME 1 | #define HAVE_CABS 1 | #define HAVE_CARG 1 | #define HAVE_CEXP 1 | #define HAVE_CLOG 1 | #define HAVE_CSQRT 1 | #define HAVE_CPOW 1 | #define HAVE_CCOS 1 | #define HAVE_CSIN 1 | #define HAVE_CTAN 1 | #define HAVE_CACOS 1 | #define HAVE_CASIN 1 | #define HAVE_CATAN 1 | #define HAVE_CCOSH 1 | #define HAVE_CSINH 1 | #define HAVE_CTANH 1 | #define HAVE_TM_ZONE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_ICONV_H 1 | #define HAVE_ICONV 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_WCHAR_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_MBRTOWC 1 | #define HAVE_WCRTOMB 1 | #define HAVE_WCSCOLL 1 | #define HAVE_WCSFTIME 1 | #define HAVE_WCSTOD 1 | #define HAVE_MBSTOWCS 1 | #define HAVE_WCSTOMBS 1 | #define HAVE_WCTRANS 1 | #define HAVE_ISWBLANK 1 | #define HAVE_WCTYPE 1 | #define HAVE_ISWCTYPE 1 | #define HAVE_WCTRANS_T 1 | #define HAVE_MBSTATE_T 1 | /* end confdefs.h. */ | | #include | #include | #include | #include | | #include | | int main () { | UErrorCode status = U_ZERO_ERROR; | UCollator *collator; | UCharIterator aIter; | | collator = ucol_open(NULL, &status); | if (U_FAILURE(status)) exit(1); | /* check if ICU is complete enough */ | uiter_setUTF8(&aIter, "abc", 3); | int result = ucol_strcollIter(collator, &aIter, &aIter, &status); | if (U_FAILURE(status)) exit(1); | exit(0); | } | configure:31478: result: no configure:31563: checking for X configure:31671: gcc -E -I/usr/local/include conftest.c configure:31671: $? = 0 configure:31710: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lX11 -lrt -ldl -lm >&5 configure:31710: $? = 0 configure:31760: result: libraries , headers configure:31883: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm -lX11 >&5 configure:31883: $? = 0 configure:31997: checking for gethostbyname configure:31997: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:31997: $? = 0 configure:31997: result: yes configure:32110: checking for connect configure:32110: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:32110: $? = 0 configure:32110: result: yes configure:32167: checking for remove configure:32167: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:32167: $? = 0 configure:32167: result: yes configure:32224: checking for shmat configure:32224: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:32224: $? = 0 configure:32224: result: yes configure:32290: checking for IceConnectionNumber in -lICE configure:32323: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lICE -lrt -ldl -lm >&5 configure:32323: $? = 0 configure:32332: result: yes configure:32347: checking X11/Intrinsic.h usability configure:32347: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:32347: $? = 0 configure:32347: result: yes configure:32347: checking X11/Intrinsic.h presence configure:32347: gcc -E -I/usr/local/include conftest.c configure:32347: $? = 0 configure:32347: result: yes configure:32347: checking for X11/Intrinsic.h configure:32347: result: yes configure:32355: checking for XtToolkitInitialize in -lXt configure:32388: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lXt -lX11 -lrt -ldl -lm >&5 configure:32388: $? = 0 configure:32397: result: yes configure:32420: result: using X11 ... yes configure:32436: checking for KeySym configure:32436: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:32436: $? = 0 configure:32436: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c: In function 'main': conftest.c:234: error: expected expression before ')' token configure:32436: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_MATHERR 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | #define HAVE_WORKING_CALLOC 1 | #define HAVE_WORKING_ISFINITE 1 | #define HAVE_WORKING_LOG1P 1 | #define HAVE_WORKING_FTELL 1 | #define HAVE_WORKING_SIGACTION 1 | #define HAVE_WORKING_64BIT_MKTIME 1 | #define HAVE_CABS 1 | #define HAVE_CARG 1 | #define HAVE_CEXP 1 | #define HAVE_CLOG 1 | #define HAVE_CSQRT 1 | #define HAVE_CPOW 1 | #define HAVE_CCOS 1 | #define HAVE_CSIN 1 | #define HAVE_CTAN 1 | #define HAVE_CACOS 1 | #define HAVE_CASIN 1 | #define HAVE_CATAN 1 | #define HAVE_CCOSH 1 | #define HAVE_CSINH 1 | #define HAVE_CTANH 1 | #define HAVE_TM_ZONE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_ICONV_H 1 | #define HAVE_ICONV 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_WCHAR_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_MBRTOWC 1 | #define HAVE_WCRTOMB 1 | #define HAVE_WCSCOLL 1 | #define HAVE_WCSFTIME 1 | #define HAVE_WCSTOD 1 | #define HAVE_MBSTOWCS 1 | #define HAVE_WCSTOMBS 1 | #define HAVE_WCTRANS 1 | #define HAVE_ISWBLANK 1 | #define HAVE_WCTYPE 1 | #define HAVE_ISWCTYPE 1 | #define HAVE_WCTRANS_T 1 | #define HAVE_MBSTATE_T 1 | #define HAVE_X11 1 | /* end confdefs.h. */ | #include | | int | main () | { | if (sizeof ((KeySym))) | return 0; | ; | return 0; | } configure:32436: result: yes configure:32455: checking X11/Xmu/Atoms.h usability configure:32455: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c:263: fatal error: X11/Xmu/Atoms.h: No such file or directory compilation terminated. configure:32455: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_MATHERR 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | #define HAVE_WORKING_CALLOC 1 | #define HAVE_WORKING_ISFINITE 1 | #define HAVE_WORKING_LOG1P 1 | #define HAVE_WORKING_FTELL 1 | #define HAVE_WORKING_SIGACTION 1 | #define HAVE_WORKING_64BIT_MKTIME 1 | #define HAVE_CABS 1 | #define HAVE_CARG 1 | #define HAVE_CEXP 1 | #define HAVE_CLOG 1 | #define HAVE_CSQRT 1 | #define HAVE_CPOW 1 | #define HAVE_CCOS 1 | #define HAVE_CSIN 1 | #define HAVE_CTAN 1 | #define HAVE_CACOS 1 | #define HAVE_CASIN 1 | #define HAVE_CATAN 1 | #define HAVE_CCOSH 1 | #define HAVE_CSINH 1 | #define HAVE_CTANH 1 | #define HAVE_TM_ZONE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_ICONV_H 1 | #define HAVE_ICONV 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_WCHAR_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_MBRTOWC 1 | #define HAVE_WCRTOMB 1 | #define HAVE_WCSCOLL 1 | #define HAVE_WCSFTIME 1 | #define HAVE_WCSTOD 1 | #define HAVE_MBSTOWCS 1 | #define HAVE_WCSTOMBS 1 | #define HAVE_WCTRANS 1 | #define HAVE_ISWBLANK 1 | #define HAVE_WCTYPE 1 | #define HAVE_ISWCTYPE 1 | #define HAVE_WCTRANS_T 1 | #define HAVE_MBSTATE_T 1 | #define HAVE_X11 1 | #define HAVE_KEYSYM 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:32455: result: no configure:32455: checking X11/Xmu/Atoms.h presence configure:32455: gcc -E -I/usr/local/include conftest.c conftest.c:230: fatal error: X11/Xmu/Atoms.h: No such file or directory compilation terminated. configure:32455: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_MATHERR 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | #define HAVE_WORKING_CALLOC 1 | #define HAVE_WORKING_ISFINITE 1 | #define HAVE_WORKING_LOG1P 1 | #define HAVE_WORKING_FTELL 1 | #define HAVE_WORKING_SIGACTION 1 | #define HAVE_WORKING_64BIT_MKTIME 1 | #define HAVE_CABS 1 | #define HAVE_CARG 1 | #define HAVE_CEXP 1 | #define HAVE_CLOG 1 | #define HAVE_CSQRT 1 | #define HAVE_CPOW 1 | #define HAVE_CCOS 1 | #define HAVE_CSIN 1 | #define HAVE_CTAN 1 | #define HAVE_CACOS 1 | #define HAVE_CASIN 1 | #define HAVE_CATAN 1 | #define HAVE_CCOSH 1 | #define HAVE_CSINH 1 | #define HAVE_CTANH 1 | #define HAVE_TM_ZONE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_ICONV_H 1 | #define HAVE_ICONV 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_WCHAR_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_MBRTOWC 1 | #define HAVE_WCRTOMB 1 | #define HAVE_WCSCOLL 1 | #define HAVE_WCSFTIME 1 | #define HAVE_WCSTOD 1 | #define HAVE_MBSTOWCS 1 | #define HAVE_WCSTOMBS 1 | #define HAVE_WCTRANS 1 | #define HAVE_ISWBLANK 1 | #define HAVE_WCTYPE 1 | #define HAVE_ISWCTYPE 1 | #define HAVE_WCTRANS_T 1 | #define HAVE_MBSTATE_T 1 | #define HAVE_X11 1 | #define HAVE_KEYSYM 1 | /* end confdefs.h. */ | #include configure:32455: result: no configure:32455: checking for X11/Xmu/Atoms.h configure:32455: result: no configure:32530: checking whether pkg-config knows about cairo and pango configure:32542: result: no configure:32615: checking whether pkg-config knows about cairo configure:32627: result: yes configure:32672: checking whether cairo is >= 1.2 and works configure:32694: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm -lpng12 -lfreetype -lz -lcairo >&5 conftest.c:231: fatal error: cairo.h: No such file or directory compilation terminated. configure:32694: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_MATHERR 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | #define HAVE_WORKING_CALLOC 1 | #define HAVE_WORKING_ISFINITE 1 | #define HAVE_WORKING_LOG1P 1 | #define HAVE_WORKING_FTELL 1 | #define HAVE_WORKING_SIGACTION 1 | #define HAVE_WORKING_64BIT_MKTIME 1 | #define HAVE_CABS 1 | #define HAVE_CARG 1 | #define HAVE_CEXP 1 | #define HAVE_CLOG 1 | #define HAVE_CSQRT 1 | #define HAVE_CPOW 1 | #define HAVE_CCOS 1 | #define HAVE_CSIN 1 | #define HAVE_CTAN 1 | #define HAVE_CACOS 1 | #define HAVE_CASIN 1 | #define HAVE_CATAN 1 | #define HAVE_CCOSH 1 | #define HAVE_CSINH 1 | #define HAVE_CTANH 1 | #define HAVE_TM_ZONE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_ICONV_H 1 | #define HAVE_ICONV 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_WCHAR_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_MBRTOWC 1 | #define HAVE_WCRTOMB 1 | #define HAVE_WCSCOLL 1 | #define HAVE_WCSFTIME 1 | #define HAVE_WCSTOD 1 | #define HAVE_MBSTOWCS 1 | #define HAVE_WCSTOMBS 1 | #define HAVE_WCTRANS 1 | #define HAVE_ISWBLANK 1 | #define HAVE_WCTYPE 1 | #define HAVE_ISWCTYPE 1 | #define HAVE_WCTRANS_T 1 | #define HAVE_MBSTATE_T 1 | #define HAVE_X11 1 | #define HAVE_KEYSYM 1 | /* end confdefs.h. */ | | #include | #include | #if CAIRO_VERSION < 10200 | #error cairo version >= 1.2 required | #endif | int main(void) { | cairo_t *CC; | cairo_arc(CC, 0.0, 0.0, 1.0, 0.0, 6.28); | cairo_select_font_face (CC, "Helvetica", CAIRO_FONT_SLANT_NORMAL, | CAIRO_FONT_WEIGHT_BOLD); | return 0; | } | configure:32705: result: no configure:32868: checking for tclConfig.sh configure:32901: result: no configure:32910: checking for tclConfig.sh in library (sub)directories configure:32931: result: no configure:32943: checking for tkConfig.sh configure:32976: result: no configure:32985: checking for tkConfig.sh in library (sub)directories configure:33006: result: no configure:33103: checking for tcl.h conftest.c:233: fatal error: tcl.h: No such file or directory compilation terminated. configure:33127: result: no configure:33522: checking for BSD networking configure:33537: result: yes configure:33558: checking if jpeglib version >= 6b configure:33580: result: yes configure:33585: checking for jpeg_destroy_compress in -ljpeg configure:33618: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ljpeg -lrt -ldl -lm -lrt -ldl -lm >&5 configure:33618: $? = 0 configure:33627: result: yes configure:33644: checking for main in -lz configure:33671: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lz -lrt -ldl -lm >&5 configure:33671: $? = 0 configure:33680: result: yes configure:33689: checking if libpng version >= 1.2.7 configure:33711: result: yes configure:33717: checking for png_create_write_struct in -lpng configure:33750: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lpng -lz -lrt -ldl -lm -lrt -ldl -lm >&5 configure:33750: $? = 0 configure:33759: result: yes configure:33778: checking tiffio.h usability configure:33778: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c:272: fatal error: tiffio.h: No such file or directory compilation terminated. configure:33778: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_MATHERR 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | #define HAVE_WORKING_CALLOC 1 | #define HAVE_WORKING_ISFINITE 1 | #define HAVE_WORKING_LOG1P 1 | #define HAVE_WORKING_FTELL 1 | #define HAVE_WORKING_SIGACTION 1 | #define HAVE_WORKING_64BIT_MKTIME 1 | #define HAVE_CABS 1 | #define HAVE_CARG 1 | #define HAVE_CEXP 1 | #define HAVE_CLOG 1 | #define HAVE_CSQRT 1 | #define HAVE_CPOW 1 | #define HAVE_CCOS 1 | #define HAVE_CSIN 1 | #define HAVE_CTAN 1 | #define HAVE_CACOS 1 | #define HAVE_CASIN 1 | #define HAVE_CATAN 1 | #define HAVE_CCOSH 1 | #define HAVE_CSINH 1 | #define HAVE_CTANH 1 | #define HAVE_TM_ZONE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_ICONV_H 1 | #define HAVE_ICONV 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_WCHAR_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_MBRTOWC 1 | #define HAVE_WCRTOMB 1 | #define HAVE_WCSCOLL 1 | #define HAVE_WCSFTIME 1 | #define HAVE_WCSTOD 1 | #define HAVE_MBSTOWCS 1 | #define HAVE_WCSTOMBS 1 | #define HAVE_WCTRANS 1 | #define HAVE_ISWBLANK 1 | #define HAVE_WCTYPE 1 | #define HAVE_ISWCTYPE 1 | #define HAVE_WCTRANS_T 1 | #define HAVE_MBSTATE_T 1 | #define HAVE_X11 1 | #define HAVE_KEYSYM 1 | #define HAVE_CAIRO_PDF 1 | #define HAVE_CAIRO_PS 1 | #define HAVE_CAIRO_SVG 1 | #define HAVE_BSD_NETWORKING 1 | #define HAVE_SOCKETS 1 | #define HAVE_INTERNET 1 | #define SUPPORT_LIBXML 1 | #define HAVE_JPEG 1 | #define HAVE_PNG 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:33778: result: no configure:33778: checking tiffio.h presence configure:33778: gcc -E -I/usr/local/include conftest.c conftest.c:239: fatal error: tiffio.h: No such file or directory compilation terminated. configure:33778: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_MATHERR 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | #define HAVE_WORKING_CALLOC 1 | #define HAVE_WORKING_ISFINITE 1 | #define HAVE_WORKING_LOG1P 1 | #define HAVE_WORKING_FTELL 1 | #define HAVE_WORKING_SIGACTION 1 | #define HAVE_WORKING_64BIT_MKTIME 1 | #define HAVE_CABS 1 | #define HAVE_CARG 1 | #define HAVE_CEXP 1 | #define HAVE_CLOG 1 | #define HAVE_CSQRT 1 | #define HAVE_CPOW 1 | #define HAVE_CCOS 1 | #define HAVE_CSIN 1 | #define HAVE_CTAN 1 | #define HAVE_CACOS 1 | #define HAVE_CASIN 1 | #define HAVE_CATAN 1 | #define HAVE_CCOSH 1 | #define HAVE_CSINH 1 | #define HAVE_CTANH 1 | #define HAVE_TM_ZONE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_ICONV_H 1 | #define HAVE_ICONV 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_WCHAR_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_MBRTOWC 1 | #define HAVE_WCRTOMB 1 | #define HAVE_WCSCOLL 1 | #define HAVE_WCSFTIME 1 | #define HAVE_WCSTOD 1 | #define HAVE_MBSTOWCS 1 | #define HAVE_WCSTOMBS 1 | #define HAVE_WCTRANS 1 | #define HAVE_ISWBLANK 1 | #define HAVE_WCTYPE 1 | #define HAVE_ISWCTYPE 1 | #define HAVE_WCTRANS_T 1 | #define HAVE_MBSTATE_T 1 | #define HAVE_X11 1 | #define HAVE_KEYSYM 1 | #define HAVE_CAIRO_PDF 1 | #define HAVE_CAIRO_PS 1 | #define HAVE_CAIRO_SVG 1 | #define HAVE_BSD_NETWORKING 1 | #define HAVE_SOCKETS 1 | #define HAVE_INTERNET 1 | #define SUPPORT_LIBXML 1 | #define HAVE_JPEG 1 | #define HAVE_PNG 1 | /* end confdefs.h. */ | #include configure:33778: result: no configure:33778: checking for tiffio.h configure:33778: result: no configure:33913: checking rpc/types.h usability configure:33913: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:33913: $? = 0 configure:33913: result: yes configure:33913: checking rpc/types.h presence configure:33913: gcc -E -I/usr/local/include conftest.c configure:33913: $? = 0 configure:33913: result: yes configure:33913: checking for rpc/types.h configure:33913: result: yes configure:33920: checking for rpc/xdr.h configure:33920: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:33920: $? = 0 configure:33920: result: yes configure:33964: checking for XDR support configure:33966: result: yes configure:34085: checking whether zlib support needs to be compiled configure:34092: result: yes configure:34094: checking mmap support for zlib configure:34114: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 conftest.c: In function 'hello': conftest.c:245: warning: passing argument 1 of 'exit' makes integer from pointer without a cast /usr/include/stdlib.h:544: note: expected 'int' but argument is of type 'void *' /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 0 has invalid symbol index 11 /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 1 has invalid symbol index 12 /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 2 has invalid symbol index 2 /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 3 has invalid symbol index 2 /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 4 has invalid symbol index 11 /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 5 has invalid symbol index 13 /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 6 has invalid symbol index 13 /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 7 has invalid symbol index 13 /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 8 has invalid symbol index 2 /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 9 has invalid symbol index 2 /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 10 has invalid symbol index 12 /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 11 has invalid symbol index 13 /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 12 has invalid symbol index 13 /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 13 has invalid symbol index 13 /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 14 has invalid symbol index 13 /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 15 has invalid symbol index 13 /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 16 has invalid symbol index 13 /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 17 has invalid symbol index 13 /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 18 has invalid symbol index 13 /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 19 has invalid symbol index 13 /usr/bin/ld: /usr/lib/debug/usr/lib/x86_64-linux-gnu/crt1.o(.debug_info): relocation 20 has invalid symbol index 21 /usr/lib/gcc/x86_64-linux-gnu/4.4.5/../../../../lib/crt1.o: In function `_start': (.text+0x20): undefined reference to `main' collect2: ld returned 1 exit status configure:34114: $? = 1 configure: program exited with status 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_MATHERR 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | #define HAVE_WORKING_CALLOC 1 | #define HAVE_WORKING_ISFINITE 1 | #define HAVE_WORKING_LOG1P 1 | #define HAVE_WORKING_FTELL 1 | #define HAVE_WORKING_SIGACTION 1 | #define HAVE_WORKING_64BIT_MKTIME 1 | #define HAVE_CABS 1 | #define HAVE_CARG 1 | #define HAVE_CEXP 1 | #define HAVE_CLOG 1 | #define HAVE_CSQRT 1 | #define HAVE_CPOW 1 | #define HAVE_CCOS 1 | #define HAVE_CSIN 1 | #define HAVE_CTAN 1 | #define HAVE_CACOS 1 | #define HAVE_CASIN 1 | #define HAVE_CATAN 1 | #define HAVE_CCOSH 1 | #define HAVE_CSINH 1 | #define HAVE_CTANH 1 | #define HAVE_TM_ZONE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_ICONV_H 1 | #define HAVE_ICONV 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_WCHAR_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_MBRTOWC 1 | #define HAVE_WCRTOMB 1 | #define HAVE_WCSCOLL 1 | #define HAVE_WCSFTIME 1 | #define HAVE_WCSTOD 1 | #define HAVE_MBSTOWCS 1 | #define HAVE_WCSTOMBS 1 | #define HAVE_WCTRANS 1 | #define HAVE_ISWBLANK 1 | #define HAVE_WCTYPE 1 | #define HAVE_ISWCTYPE 1 | #define HAVE_WCTRANS_T 1 | #define HAVE_MBSTATE_T 1 | #define HAVE_X11 1 | #define HAVE_KEYSYM 1 | #define HAVE_CAIRO_PDF 1 | #define HAVE_CAIRO_PS 1 | #define HAVE_CAIRO_SVG 1 | #define HAVE_BSD_NETWORKING 1 | #define HAVE_SOCKETS 1 | #define HAVE_INTERNET 1 | #define SUPPORT_LIBXML 1 | #define HAVE_JPEG 1 | #define HAVE_PNG 1 | /* end confdefs.h. */ | | #include | #include | #include | #include | caddr_t hello() { | exit(mmap((caddr_t)0, (off_t)0, PROT_READ, MAP_SHARED, 0, (off_t)0)); | } | configure:34124: result: yes configure:34269: checking whether bzip2 support needs to be compiled configure:34276: result: yes configure:34291: checking for lzma_version_number in -llzma configure:34324: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -llzma -lrt -ldl -lm >&5 /usr/bin/ld: cannot find -llzma collect2: ld returned 1 exit status configure:34324: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_MATHERR 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | #define HAVE_WORKING_CALLOC 1 | #define HAVE_WORKING_ISFINITE 1 | #define HAVE_WORKING_LOG1P 1 | #define HAVE_WORKING_FTELL 1 | #define HAVE_WORKING_SIGACTION 1 | #define HAVE_WORKING_64BIT_MKTIME 1 | #define HAVE_CABS 1 | #define HAVE_CARG 1 | #define HAVE_CEXP 1 | #define HAVE_CLOG 1 | #define HAVE_CSQRT 1 | #define HAVE_CPOW 1 | #define HAVE_CCOS 1 | #define HAVE_CSIN 1 | #define HAVE_CTAN 1 | #define HAVE_CACOS 1 | #define HAVE_CASIN 1 | #define HAVE_CATAN 1 | #define HAVE_CCOSH 1 | #define HAVE_CSINH 1 | #define HAVE_CTANH 1 | #define HAVE_TM_ZONE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_ICONV_H 1 | #define HAVE_ICONV 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_WCHAR_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_MBRTOWC 1 | #define HAVE_WCRTOMB 1 | #define HAVE_WCSCOLL 1 | #define HAVE_WCSFTIME 1 | #define HAVE_WCSTOD 1 | #define HAVE_MBSTOWCS 1 | #define HAVE_WCSTOMBS 1 | #define HAVE_WCTRANS 1 | #define HAVE_ISWBLANK 1 | #define HAVE_WCTYPE 1 | #define HAVE_ISWCTYPE 1 | #define HAVE_WCTRANS_T 1 | #define HAVE_MBSTATE_T 1 | #define HAVE_X11 1 | #define HAVE_KEYSYM 1 | #define HAVE_CAIRO_PDF 1 | #define HAVE_CAIRO_PS 1 | #define HAVE_CAIRO_SVG 1 | #define HAVE_BSD_NETWORKING 1 | #define HAVE_SOCKETS 1 | #define HAVE_INTERNET 1 | #define SUPPORT_LIBXML 1 | #define HAVE_JPEG 1 | #define HAVE_PNG 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char lzma_version_number (); | #ifdef F77_DUMMY_MAIN | | # ifdef __cplusplus | extern "C" | # endif | int F77_DUMMY_MAIN() { return 1; } | | #endif | int | main () | { | return lzma_version_number (); | ; | return 0; | } configure:34333: result: no configure:34555: checking whether PCRE support needs to be compiled configure:34561: result: yes configure:34662: checking whether leap seconds are treated according to POSIX configure:34689: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:34689: $? = 0 configure:34689: ./conftest configure:34689: $? = 1 configure: program exited with status 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_MATHERR 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | #define HAVE_WORKING_CALLOC 1 | #define HAVE_WORKING_ISFINITE 1 | #define HAVE_WORKING_LOG1P 1 | #define HAVE_WORKING_FTELL 1 | #define HAVE_WORKING_SIGACTION 1 | #define HAVE_WORKING_64BIT_MKTIME 1 | #define HAVE_CABS 1 | #define HAVE_CARG 1 | #define HAVE_CEXP 1 | #define HAVE_CLOG 1 | #define HAVE_CSQRT 1 | #define HAVE_CPOW 1 | #define HAVE_CCOS 1 | #define HAVE_CSIN 1 | #define HAVE_CTAN 1 | #define HAVE_CACOS 1 | #define HAVE_CASIN 1 | #define HAVE_CATAN 1 | #define HAVE_CCOSH 1 | #define HAVE_CSINH 1 | #define HAVE_CTANH 1 | #define HAVE_TM_ZONE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_ICONV_H 1 | #define HAVE_ICONV 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_WCHAR_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_MBRTOWC 1 | #define HAVE_WCRTOMB 1 | #define HAVE_WCSCOLL 1 | #define HAVE_WCSFTIME 1 | #define HAVE_WCSTOD 1 | #define HAVE_MBSTOWCS 1 | #define HAVE_WCSTOMBS 1 | #define HAVE_WCTRANS 1 | #define HAVE_ISWBLANK 1 | #define HAVE_WCTYPE 1 | #define HAVE_ISWCTYPE 1 | #define HAVE_WCTRANS_T 1 | #define HAVE_MBSTATE_T 1 | #define HAVE_X11 1 | #define HAVE_KEYSYM 1 | #define HAVE_CAIRO_PDF 1 | #define HAVE_CAIRO_PS 1 | #define HAVE_CAIRO_SVG 1 | #define HAVE_BSD_NETWORKING 1 | #define HAVE_SOCKETS 1 | #define HAVE_INTERNET 1 | #define SUPPORT_LIBXML 1 | #define HAVE_JPEG 1 | #define HAVE_PNG 1 | /* end confdefs.h. */ | | #include | #include | #include | #include "confdefs.h" | | int main () { | struct tm *tm; | time_t ct = 0; /* required on 64bit AIX */ | | ctime(&ct); | ct = ct - (ct % 60); | tm = gmtime(&ct); | if(tm->tm_sec == 0) exit(1); else exit(0); | } | configure:34699: result: yes configure:34709: checking for inline configure:34725: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:34725: $? = 0 configure:34733: result: inline configure:34757: checking for sys/time.h configure:34757: result: yes configure:34757: checking for stdlib.h configure:34757: result: yes configure:34757: checking for unistd.h configure:34757: result: yes configure:34757: checking for sys/param.h configure:34757: result: yes configure:34774: checking for struct stat.st_atim.tv_nsec configure:34774: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:34774: $? = 0 configure:34774: result: yes configure:34783: checking whether struct stat.st_atim is of type struct timespec configure:34818: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:34818: $? = 0 configure:34825: result: yes configure:34879: checking for setitimer configure:34879: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:34879: $? = 0 configure:34879: result: yes configure:34910: checking for special C compiler options needed for large files configure:34963: result: no configure:34969: checking for _FILE_OFFSET_BITS value needed for large files configure:35002: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:35002: $? = 0 configure:35042: result: no configure:35143: checking for _LARGEFILE_SOURCE value needed for large files configure:35170: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:35170: $? = 0 configure:35206: result: no configure:35265: checking whether KERN_USRSTACK sysctl is supported configure:35292: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 conftest.c: In function 'main': conftest.c:259: error: 'KERN_USRSTACK' undeclared (first use in this function) conftest.c:259: error: (Each undeclared identifier is reported only once conftest.c:259: error: for each function it appears in.) configure:35292: $? = 1 configure: program exited with status 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_MATHERR 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | #define HAVE_WORKING_CALLOC 1 | #define HAVE_WORKING_ISFINITE 1 | #define HAVE_WORKING_LOG1P 1 | #define HAVE_WORKING_FTELL 1 | #define HAVE_WORKING_SIGACTION 1 | #define HAVE_WORKING_64BIT_MKTIME 1 | #define HAVE_CABS 1 | #define HAVE_CARG 1 | #define HAVE_CEXP 1 | #define HAVE_CLOG 1 | #define HAVE_CSQRT 1 | #define HAVE_CPOW 1 | #define HAVE_CCOS 1 | #define HAVE_CSIN 1 | #define HAVE_CTAN 1 | #define HAVE_CACOS 1 | #define HAVE_CASIN 1 | #define HAVE_CATAN 1 | #define HAVE_CCOSH 1 | #define HAVE_CSINH 1 | #define HAVE_CTANH 1 | #define HAVE_TM_ZONE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_ICONV_H 1 | #define HAVE_ICONV 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_WCHAR_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_MBRTOWC 1 | #define HAVE_WCRTOMB 1 | #define HAVE_WCSCOLL 1 | #define HAVE_WCSFTIME 1 | #define HAVE_WCSTOD 1 | #define HAVE_MBSTOWCS 1 | #define HAVE_WCSTOMBS 1 | #define HAVE_WCTRANS 1 | #define HAVE_ISWBLANK 1 | #define HAVE_WCTYPE 1 | #define HAVE_ISWCTYPE 1 | #define HAVE_WCTRANS_T 1 | #define HAVE_MBSTATE_T 1 | #define HAVE_X11 1 | #define HAVE_KEYSYM 1 | #define HAVE_CAIRO_PDF 1 | #define HAVE_CAIRO_PS 1 | #define HAVE_CAIRO_SVG 1 | #define HAVE_BSD_NETWORKING 1 | #define HAVE_SOCKETS 1 | #define HAVE_INTERNET 1 | #define SUPPORT_LIBXML 1 | #define HAVE_JPEG 1 | #define HAVE_PNG 1 | #define HAVE_POSIX_LEAPSECONDS 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_STRUCT_STAT_ST_ATIM_TV_NSEC 1 | #define TYPEOF_STRUCT_STAT_ST_ATIM_IS_STRUCT_TIMESPEC 1 | #define HAVE_SETITIMER 1 | #define R_PROFILING 1 | #define HAVE_FSEEKO 1 | #define NVALGRIND 1 | #define VALGRIND_LEVEL 0 | /* end confdefs.h. */ | | #include "confdefs.h" | #include | #include | #include | #include | | int main () { | int nm[2] = {CTL_KERN, KERN_USRSTACK}; | void * base; | size_t len = sizeof(void *); | int r = sysctl(nm, 2, &base, &len, NULL, 0); | | exit((r==0)?0:1); | } | configure:35302: result: no configure:35315: checking for visible __lib_stack_end configure:35335: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:35335: $? = 0 configure:35335: ./conftest configure:35335: $? = 0 configure:35345: result: yes configure:35365: checking for lpr configure:35381: found /usr/bin/lpr configure:35392: result: lpr configure:35413: checking for paperconf configure:35431: found /usr/bin/paperconf configure:35444: result: /usr/bin/paperconf configure:35539: checking for gfortran configure:35555: found /usr/bin/gfortran configure:35566: result: gfortran configure:35592: checking for Fortran compiler version configure:35601: gfortran --version >&5 GNU Fortran (Ubuntu/Linaro 4.4.4-14ubuntu5) 4.4.5 Copyright (C) 2010 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING configure:35612: $? = 0 configure:35601: gfortran -v >&5 Using built-in specs. Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 4.4.4-14ubuntu5' --with-bugurl=file:///usr/share/doc/gcc-4.4/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.4 --enable-shared --enable-multiarch --enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.4 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-objc-gc --disable-werror --with-arch-32=i686 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.4.5 (Ubuntu/Linaro 4.4.4-14ubuntu5) configure:35612: $? = 0 configure:35601: gfortran -V >&5 gfortran: '-V' option must have argument configure:35612: $? = 1 configure:35601: gfortran -qversion >&5 gfortran: unrecognized option '-qversion' gfortran: no input files configure:35612: $? = 1 configure:35621: checking whether we are using the GNU Fortran compiler configure:35634: gfortran -c conftest.F >&5 configure:35634: $? = 0 configure:35643: result: yes configure:35649: checking whether gfortran accepts -g configure:35660: gfortran -c -g conftest.f >&5 configure:35660: $? = 0 configure:35668: result: yes configure:35804: checking for Fortran compiler version configure:35813: gfortran --version >&5 GNU Fortran (Ubuntu/Linaro 4.4.4-14ubuntu5) 4.4.5 Copyright (C) 2010 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING configure:35824: $? = 0 configure:35813: gfortran -v >&5 Using built-in specs. Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 4.4.4-14ubuntu5' --with-bugurl=file:///usr/share/doc/gcc-4.4/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.4 --enable-shared --enable-multiarch --enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.4 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-objc-gc --disable-werror --with-arch-32=i686 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.4.5 (Ubuntu/Linaro 4.4.4-14ubuntu5) configure:35824: $? = 0 configure:35813: gfortran -V >&5 gfortran: '-V' option must have argument configure:35824: $? = 1 configure:35813: gfortran -qversion >&5 gfortran: unrecognized option '-qversion' gfortran: no input files configure:35824: $? = 1 configure:35833: checking whether we are using the GNU Fortran compiler configure:35855: result: yes configure:35861: checking whether gfortran accepts -g configure:35880: result: yes configure:36018: checking if libtool supports shared libraries configure:36020: result: yes configure:36023: checking whether to build shared libraries configure:36043: result: yes configure:36046: checking whether to build static libraries configure:36050: result: no configure:36076: gfortran -c -g -O2 conftest.f >&5 configure:36079: $? = 0 configure:36189: checking for gfortran option to produce PIC configure:36461: result: -fPIC configure:36470: checking if gfortran PIC flag -fPIC works configure:36488: gfortran -c -g -O2 -fPIC conftest.f >&5 configure:36492: $? = 0 configure:36505: result: yes configure:36526: checking if gfortran static flag -static works configure:36554: result: yes configure:36566: checking if gfortran supports -c -o file.o configure:36587: gfortran -c -g -O2 -o out/conftest2.o conftest.f >&5 configure:36591: $? = 0 configure:36613: result: yes configure:36618: checking if gfortran supports -c -o file.o configure:36665: result: yes configure:36695: checking whether the gfortran linker (/usr/bin/ld) supports shared libraries configure:37668: result: yes configure:37805: checking dynamic linker characteristics configure:38180: gfortran -o conftest -g -O2 -L/usr/local/lib64 -Wl,-rpath -Wl,/foo conftest.f -lrt -ldl -lm >&5 configure:38180: $? = 0 configure:38398: result: GNU/Linux ld.so configure:38449: checking how to hardcode library paths into programs configure:38474: result: immediate configure:38515: checking for Fortran flag to compile .f90 files configure:38535: gfortran -c -g -O2 conftest.f90 >&5 configure:38535: $? = 0 configure:38544: result: none configure:38569: checking for Fortran flag to compile .f95 files configure:38589: gfortran -c -g -O2 conftest.f95 >&5 configure:38589: $? = 0 configure:38598: result: none configure:38627: checking for gfortran option to support OpenMP configure:38642: gfortran -o conftest -g -O2 -L/usr/local/lib64 conftest.f95 -lrt -ldl -lm >&5 conftest.f95:5.9: tid = 42 1 Error: Symbol 'tid' at (1) has no IMPLICIT type configure:38642: $? = 1 configure: failed program was: | | program main | implicit none | !$ integer tid | tid = 42 | call omp_set_num_threads(2) | end | configure:38660: gfortran -o conftest -g -O2 -fopenmp -L/usr/local/lib64 conftest.f95 -lrt -ldl -lm >&5 configure:38660: $? = 0 configure:38674: result: -fopenmp configure:38885: checking for recommended packages configure:38901: result: yes configure:38921: checking whether NLS is requested configure:38930: result: yes configure:38938: checking for a thread-safe mkdir -p configure:38977: result: /bin/mkdir -p configure:38988: checking whether we are using the GNU C Library 2 or newer configure:39015: result: yes configure:39064: checking for ranlib configure:39091: result: ranlib configure:39118: checking for simple visibility declarations configure:39148: gcc -std=gnu99 -c -g -O2 -fvisibility=hidden -I/usr/local/include conftest.c >&5 configure:39148: $? = 0 configure:39157: result: yes configure:39173: checking for stdint.h configure:39198: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:39198: $? = 0 configure:39205: result: yes configure:39224: checking for getpagesize configure:39224: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:39224: $? = 0 configure:39224: result: yes configure:39233: checking for working mmap configure:39380: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:39380: $? = 0 configure:39380: ./conftest configure:39380: $? = 0 configure:39390: result: yes configure:39401: checking whether integer division by zero raises SIGFPE configure:39458: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 conftest.c:276: warning: built-in function 'nan' declared as non-function configure:39458: $? = 0 configure:39458: ./conftest configure:39458: $? = 0 configure:39469: result: yes configure:39482: checking for inttypes.h configure:39507: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:39507: $? = 0 configure:39514: result: yes configure:39525: checking for unsigned long long int configure:39554: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:39554: $? = 0 configure:39562: result: yes configure:39601: checking for inttypes.h configure:39601: result: yes configure:39612: checking whether the inttypes.h PRIxNN macros are broken configure:39641: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:39641: $? = 0 configure:39649: result: no configure:39725: checking whether imported symbols can be declared weak configure:39748: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:39748: $? = 0 configure:39753: result: yes configure:40571: checking for multithread API to use configure:40573: result: none configure:40609: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:40609: $? = 0 configure:40620: checking argz.h usability configure:40620: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:40620: $? = 0 configure:40620: result: yes configure:40620: checking argz.h presence configure:40620: gcc -E -I/usr/local/include conftest.c configure:40620: $? = 0 configure:40620: result: yes configure:40620: checking for argz.h configure:40620: result: yes configure:40620: checking for inttypes.h configure:40620: result: yes configure:40620: checking for limits.h configure:40620: result: yes configure:40620: checking for unistd.h configure:40620: result: yes configure:40620: checking for sys/param.h configure:40620: result: yes configure:40635: checking for getcwd configure:40635: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:40635: $? = 0 configure:40635: result: yes configure:40635: checking for getegid configure:40635: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:40635: $? = 0 configure:40635: result: yes configure:40635: checking for geteuid configure:40635: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:40635: $? = 0 configure:40635: result: yes configure:40635: checking for getgid configure:40635: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:40635: $? = 0 configure:40635: result: yes configure:40635: checking for getuid configure:40635: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:40635: $? = 0 configure:40635: result: yes configure:40635: checking for mempcpy configure:40635: result: yes configure:40635: checking for munmap configure:40635: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:40635: $? = 0 configure:40635: result: yes configure:40635: checking for stpcpy configure:40635: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 conftest.c:300: warning: conflicting types for built-in function 'stpcpy' configure:40635: $? = 0 configure:40635: result: yes configure:40635: checking for strcasecmp configure:40635: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 conftest.c:301: warning: conflicting types for built-in function 'strcasecmp' configure:40635: $? = 0 configure:40635: result: yes configure:40635: checking for strdup configure:40635: result: yes configure:40635: checking for strtoul configure:40635: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:40635: $? = 0 configure:40635: result: yes configure:40635: checking for tsearch configure:40635: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:40635: $? = 0 configure:40635: result: yes configure:40635: checking for argz_count configure:40635: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:40635: $? = 0 configure:40635: result: yes configure:40635: checking for argz_stringify configure:40635: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:40635: $? = 0 configure:40635: result: yes configure:40635: checking for argz_next configure:40635: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:40635: $? = 0 configure:40635: result: yes configure:40635: checking for __fsetlocking configure:40635: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:40635: $? = 0 configure:40635: result: yes configure:40646: checking whether feof_unlocked is declared configure:40674: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:40674: $? = 0 configure:40681: result: yes configure:40695: checking whether fgets_unlocked is declared configure:40723: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:40723: $? = 0 configure:40730: result: yes configure:40773: checking for iconv configure:40843: result: yes configure:40864: checking for iconv declaration configure:40912: result: extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); configure:40923: checking for NL_LOCALE_NAME macro configure:40948: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:40948: $? = 0 configure:40957: result: yes configure:40969: checking for bison configure:40999: result: no configure:41027: checking for long long int configure:41058: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:41058: $? = 0 configure:41066: result: yes configure:41075: checking for long double configure:41115: result: yes configure:41119: checking for wchar_t configure:41144: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:41144: $? = 0 configure:41151: result: yes configure:41160: checking for wint_t configure:41185: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:41185: $? = 0 configure:41192: result: yes configure:41203: checking for intmax_t configure:41237: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:41237: $? = 0 configure:41244: result: yes configure:41254: checking whether printf() supports POSIX/XSI format strings configure:41295: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:41295: $? = 0 configure:41295: ./conftest configure:41295: $? = 0 configure:41306: result: yes configure:41317: checking whether we are using the GNU C Library 2.1 or newer configure:41344: result: yes configure:41353: checking for stdint.h configure:41353: result: yes configure:41363: checking for SIZE_MAX configure:41445: result: yes configure:41460: checking for stdint.h configure:41460: result: yes configure:41472: checking for CFPreferencesCopyAppValue configure:41498: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm -Wl,-framework -Wl,CoreFoundation >&5 conftest.c:298: fatal error: CoreFoundation/CFPreferences.h: No such file or directory compilation terminated. configure:41498: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_MATHERR 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | #define HAVE_WORKING_CALLOC 1 | #define HAVE_WORKING_ISFINITE 1 | #define HAVE_WORKING_LOG1P 1 | #define HAVE_WORKING_FTELL 1 | #define HAVE_WORKING_SIGACTION 1 | #define HAVE_WORKING_64BIT_MKTIME 1 | #define HAVE_CABS 1 | #define HAVE_CARG 1 | #define HAVE_CEXP 1 | #define HAVE_CLOG 1 | #define HAVE_CSQRT 1 | #define HAVE_CPOW 1 | #define HAVE_CCOS 1 | #define HAVE_CSIN 1 | #define HAVE_CTAN 1 | #define HAVE_CACOS 1 | #define HAVE_CASIN 1 | #define HAVE_CATAN 1 | #define HAVE_CCOSH 1 | #define HAVE_CSINH 1 | #define HAVE_CTANH 1 | #define HAVE_TM_ZONE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_ICONV_H 1 | #define HAVE_ICONV 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_WCHAR_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_MBRTOWC 1 | #define HAVE_WCRTOMB 1 | #define HAVE_WCSCOLL 1 | #define HAVE_WCSFTIME 1 | #define HAVE_WCSTOD 1 | #define HAVE_MBSTOWCS 1 | #define HAVE_WCSTOMBS 1 | #define HAVE_WCTRANS 1 | #define HAVE_ISWBLANK 1 | #define HAVE_WCTYPE 1 | #define HAVE_ISWCTYPE 1 | #define HAVE_WCTRANS_T 1 | #define HAVE_MBSTATE_T 1 | #define HAVE_X11 1 | #define HAVE_KEYSYM 1 | #define HAVE_CAIRO_PDF 1 | #define HAVE_CAIRO_PS 1 | #define HAVE_CAIRO_SVG 1 | #define HAVE_BSD_NETWORKING 1 | #define HAVE_SOCKETS 1 | #define HAVE_INTERNET 1 | #define SUPPORT_LIBXML 1 | #define HAVE_JPEG 1 | #define HAVE_PNG 1 | #define HAVE_POSIX_LEAPSECONDS 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_STRUCT_STAT_ST_ATIM_TV_NSEC 1 | #define TYPEOF_STRUCT_STAT_ST_ATIM_IS_STRUCT_TIMESPEC 1 | #define HAVE_SETITIMER 1 | #define R_PROFILING 1 | #define HAVE_FSEEKO 1 | #define NVALGRIND 1 | #define VALGRIND_LEVEL 0 | #define HAVE_LIBC_STACK_END 1 | #define R_PRINTCMD "lpr" | #define SUPPORT_OPENMP 1 | #define HAVE_VISIBILITY 1 | #define HAVE_STDINT_H_WITH_UINTMAX 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define INTDIV0_RAISES_SIGFPE 1 | #define HAVE_INTTYPES_H_WITH_UINTMAX 1 | #define HAVE_UNSIGNED_LONG_LONG_INT 1 | #define HAVE_UNSIGNED_LONG_LONG 1 | #define HAVE_UINTMAX_T 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_ARGZ_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEGID 1 | #define HAVE_GETEUID 1 | #define HAVE_GETGID 1 | #define HAVE_GETUID 1 | #define HAVE_MEMPCPY 1 | #define HAVE_MUNMAP 1 | #define HAVE_STPCPY 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRTOUL 1 | #define HAVE_TSEARCH 1 | #define HAVE_ARGZ_COUNT 1 | #define HAVE_ARGZ_STRINGIFY 1 | #define HAVE_ARGZ_NEXT 1 | #define HAVE___FSETLOCKING 1 | #define HAVE_DECL_FEOF_UNLOCKED 1 | #define HAVE_DECL_FGETS_UNLOCKED 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_NL_LOCALE_NAME 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_WCHAR_T 1 | #define HAVE_WINT_T 1 | #define HAVE_INTMAX_T 1 | #define HAVE_POSIX_PRINTF 1 | #define HAVE_STDINT_H 1 | #define HAVE_STDINT_H 1 | /* end confdefs.h. */ | #include | #ifdef F77_DUMMY_MAIN | | # ifdef __cplusplus | extern "C" | # endif | int F77_DUMMY_MAIN() { return 1; } | | #endif | int | main () | { | CFPreferencesCopyAppValue(NULL, NULL) | ; | return 0; | } configure:41507: result: no configure:41514: checking for CFLocaleCopyCurrent configure:41540: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm -Wl,-framework -Wl,CoreFoundation >&5 conftest.c:298: fatal error: CoreFoundation/CFLocale.h: No such file or directory compilation terminated. configure:41540: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_MATHERR 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | #define HAVE_WORKING_CALLOC 1 | #define HAVE_WORKING_ISFINITE 1 | #define HAVE_WORKING_LOG1P 1 | #define HAVE_WORKING_FTELL 1 | #define HAVE_WORKING_SIGACTION 1 | #define HAVE_WORKING_64BIT_MKTIME 1 | #define HAVE_CABS 1 | #define HAVE_CARG 1 | #define HAVE_CEXP 1 | #define HAVE_CLOG 1 | #define HAVE_CSQRT 1 | #define HAVE_CPOW 1 | #define HAVE_CCOS 1 | #define HAVE_CSIN 1 | #define HAVE_CTAN 1 | #define HAVE_CACOS 1 | #define HAVE_CASIN 1 | #define HAVE_CATAN 1 | #define HAVE_CCOSH 1 | #define HAVE_CSINH 1 | #define HAVE_CTANH 1 | #define HAVE_TM_ZONE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_ICONV_H 1 | #define HAVE_ICONV 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_WCHAR_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_MBRTOWC 1 | #define HAVE_WCRTOMB 1 | #define HAVE_WCSCOLL 1 | #define HAVE_WCSFTIME 1 | #define HAVE_WCSTOD 1 | #define HAVE_MBSTOWCS 1 | #define HAVE_WCSTOMBS 1 | #define HAVE_WCTRANS 1 | #define HAVE_ISWBLANK 1 | #define HAVE_WCTYPE 1 | #define HAVE_ISWCTYPE 1 | #define HAVE_WCTRANS_T 1 | #define HAVE_MBSTATE_T 1 | #define HAVE_X11 1 | #define HAVE_KEYSYM 1 | #define HAVE_CAIRO_PDF 1 | #define HAVE_CAIRO_PS 1 | #define HAVE_CAIRO_SVG 1 | #define HAVE_BSD_NETWORKING 1 | #define HAVE_SOCKETS 1 | #define HAVE_INTERNET 1 | #define SUPPORT_LIBXML 1 | #define HAVE_JPEG 1 | #define HAVE_PNG 1 | #define HAVE_POSIX_LEAPSECONDS 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_STRUCT_STAT_ST_ATIM_TV_NSEC 1 | #define TYPEOF_STRUCT_STAT_ST_ATIM_IS_STRUCT_TIMESPEC 1 | #define HAVE_SETITIMER 1 | #define R_PROFILING 1 | #define HAVE_FSEEKO 1 | #define NVALGRIND 1 | #define VALGRIND_LEVEL 0 | #define HAVE_LIBC_STACK_END 1 | #define R_PRINTCMD "lpr" | #define SUPPORT_OPENMP 1 | #define HAVE_VISIBILITY 1 | #define HAVE_STDINT_H_WITH_UINTMAX 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define INTDIV0_RAISES_SIGFPE 1 | #define HAVE_INTTYPES_H_WITH_UINTMAX 1 | #define HAVE_UNSIGNED_LONG_LONG_INT 1 | #define HAVE_UNSIGNED_LONG_LONG 1 | #define HAVE_UINTMAX_T 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_ARGZ_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEGID 1 | #define HAVE_GETEUID 1 | #define HAVE_GETGID 1 | #define HAVE_GETUID 1 | #define HAVE_MEMPCPY 1 | #define HAVE_MUNMAP 1 | #define HAVE_STPCPY 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRTOUL 1 | #define HAVE_TSEARCH 1 | #define HAVE_ARGZ_COUNT 1 | #define HAVE_ARGZ_STRINGIFY 1 | #define HAVE_ARGZ_NEXT 1 | #define HAVE___FSETLOCKING 1 | #define HAVE_DECL_FEOF_UNLOCKED 1 | #define HAVE_DECL_FGETS_UNLOCKED 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_NL_LOCALE_NAME 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_WCHAR_T 1 | #define HAVE_WINT_T 1 | #define HAVE_INTMAX_T 1 | #define HAVE_POSIX_PRINTF 1 | #define HAVE_STDINT_H 1 | #define HAVE_STDINT_H 1 | /* end confdefs.h. */ | #include | #ifdef F77_DUMMY_MAIN | | # ifdef __cplusplus | extern "C" | # endif | int F77_DUMMY_MAIN() { return 1; } | | #endif | int | main () | { | CFLocaleCopyCurrent(); | ; | return 0; | } configure:41549: result: no configure:41567: checking for ptrdiff_t configure:41567: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:41567: $? = 0 configure:41567: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c: In function 'main': conftest.c:334: error: expected expression before ')' token configure:41567: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_MATHERR 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | #define HAVE_WORKING_CALLOC 1 | #define HAVE_WORKING_ISFINITE 1 | #define HAVE_WORKING_LOG1P 1 | #define HAVE_WORKING_FTELL 1 | #define HAVE_WORKING_SIGACTION 1 | #define HAVE_WORKING_64BIT_MKTIME 1 | #define HAVE_CABS 1 | #define HAVE_CARG 1 | #define HAVE_CEXP 1 | #define HAVE_CLOG 1 | #define HAVE_CSQRT 1 | #define HAVE_CPOW 1 | #define HAVE_CCOS 1 | #define HAVE_CSIN 1 | #define HAVE_CTAN 1 | #define HAVE_CACOS 1 | #define HAVE_CASIN 1 | #define HAVE_CATAN 1 | #define HAVE_CCOSH 1 | #define HAVE_CSINH 1 | #define HAVE_CTANH 1 | #define HAVE_TM_ZONE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_ICONV_H 1 | #define HAVE_ICONV 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_WCHAR_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_MBRTOWC 1 | #define HAVE_WCRTOMB 1 | #define HAVE_WCSCOLL 1 | #define HAVE_WCSFTIME 1 | #define HAVE_WCSTOD 1 | #define HAVE_MBSTOWCS 1 | #define HAVE_WCSTOMBS 1 | #define HAVE_WCTRANS 1 | #define HAVE_ISWBLANK 1 | #define HAVE_WCTYPE 1 | #define HAVE_ISWCTYPE 1 | #define HAVE_WCTRANS_T 1 | #define HAVE_MBSTATE_T 1 | #define HAVE_X11 1 | #define HAVE_KEYSYM 1 | #define HAVE_CAIRO_PDF 1 | #define HAVE_CAIRO_PS 1 | #define HAVE_CAIRO_SVG 1 | #define HAVE_BSD_NETWORKING 1 | #define HAVE_SOCKETS 1 | #define HAVE_INTERNET 1 | #define SUPPORT_LIBXML 1 | #define HAVE_JPEG 1 | #define HAVE_PNG 1 | #define HAVE_POSIX_LEAPSECONDS 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_STRUCT_STAT_ST_ATIM_TV_NSEC 1 | #define TYPEOF_STRUCT_STAT_ST_ATIM_IS_STRUCT_TIMESPEC 1 | #define HAVE_SETITIMER 1 | #define R_PROFILING 1 | #define HAVE_FSEEKO 1 | #define NVALGRIND 1 | #define VALGRIND_LEVEL 0 | #define HAVE_LIBC_STACK_END 1 | #define R_PRINTCMD "lpr" | #define SUPPORT_OPENMP 1 | #define HAVE_VISIBILITY 1 | #define HAVE_STDINT_H_WITH_UINTMAX 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define INTDIV0_RAISES_SIGFPE 1 | #define HAVE_INTTYPES_H_WITH_UINTMAX 1 | #define HAVE_UNSIGNED_LONG_LONG_INT 1 | #define HAVE_UNSIGNED_LONG_LONG 1 | #define HAVE_UINTMAX_T 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_ARGZ_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEGID 1 | #define HAVE_GETEUID 1 | #define HAVE_GETGID 1 | #define HAVE_GETUID 1 | #define HAVE_MEMPCPY 1 | #define HAVE_MUNMAP 1 | #define HAVE_STPCPY 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRTOUL 1 | #define HAVE_TSEARCH 1 | #define HAVE_ARGZ_COUNT 1 | #define HAVE_ARGZ_STRINGIFY 1 | #define HAVE_ARGZ_NEXT 1 | #define HAVE___FSETLOCKING 1 | #define HAVE_DECL_FEOF_UNLOCKED 1 | #define HAVE_DECL_FGETS_UNLOCKED 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_NL_LOCALE_NAME 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_WCHAR_T 1 | #define HAVE_WINT_T 1 | #define HAVE_INTMAX_T 1 | #define HAVE_POSIX_PRINTF 1 | #define HAVE_STDINT_H 1 | #define HAVE_STDINT_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((ptrdiff_t))) | return 0; | ; | return 0; | } configure:41567: result: yes configure:41580: checking stddef.h usability configure:41580: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:41580: $? = 0 configure:41580: result: yes configure:41580: checking stddef.h presence configure:41580: gcc -E -I/usr/local/include conftest.c configure:41580: $? = 0 configure:41580: result: yes configure:41580: checking for stddef.h configure:41580: result: yes configure:41580: checking for stdlib.h configure:41580: result: yes configure:41580: checking for string.h configure:41580: result: yes configure:41593: checking for asprintf configure:41593: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:41593: $? = 0 configure:41593: result: yes configure:41593: checking for fwprintf configure:41593: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:41593: $? = 0 configure:41593: result: yes configure:41593: checking for putenv configure:41593: result: yes configure:41593: checking for setenv configure:41593: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:41593: $? = 0 configure:41593: result: yes configure:41593: checking for setlocale configure:41593: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:41593: $? = 0 configure:41593: result: yes configure:41593: checking for snprintf configure:41593: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 conftest.c:329: warning: conflicting types for built-in function 'snprintf' configure:41593: $? = 0 configure:41593: result: yes configure:41593: checking for wcslen configure:41593: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:41593: $? = 0 configure:41593: result: yes configure:41604: checking whether _snprintf is declared configure:41632: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c: In function 'main': conftest.c:322: error: '_snprintf' undeclared (first use in this function) conftest.c:322: error: (Each undeclared identifier is reported only once conftest.c:322: error: for each function it appears in.) configure:41632: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_MATHERR 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | #define HAVE_WORKING_CALLOC 1 | #define HAVE_WORKING_ISFINITE 1 | #define HAVE_WORKING_LOG1P 1 | #define HAVE_WORKING_FTELL 1 | #define HAVE_WORKING_SIGACTION 1 | #define HAVE_WORKING_64BIT_MKTIME 1 | #define HAVE_CABS 1 | #define HAVE_CARG 1 | #define HAVE_CEXP 1 | #define HAVE_CLOG 1 | #define HAVE_CSQRT 1 | #define HAVE_CPOW 1 | #define HAVE_CCOS 1 | #define HAVE_CSIN 1 | #define HAVE_CTAN 1 | #define HAVE_CACOS 1 | #define HAVE_CASIN 1 | #define HAVE_CATAN 1 | #define HAVE_CCOSH 1 | #define HAVE_CSINH 1 | #define HAVE_CTANH 1 | #define HAVE_TM_ZONE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_ICONV_H 1 | #define HAVE_ICONV 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_WCHAR_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_MBRTOWC 1 | #define HAVE_WCRTOMB 1 | #define HAVE_WCSCOLL 1 | #define HAVE_WCSFTIME 1 | #define HAVE_WCSTOD 1 | #define HAVE_MBSTOWCS 1 | #define HAVE_WCSTOMBS 1 | #define HAVE_WCTRANS 1 | #define HAVE_ISWBLANK 1 | #define HAVE_WCTYPE 1 | #define HAVE_ISWCTYPE 1 | #define HAVE_WCTRANS_T 1 | #define HAVE_MBSTATE_T 1 | #define HAVE_X11 1 | #define HAVE_KEYSYM 1 | #define HAVE_CAIRO_PDF 1 | #define HAVE_CAIRO_PS 1 | #define HAVE_CAIRO_SVG 1 | #define HAVE_BSD_NETWORKING 1 | #define HAVE_SOCKETS 1 | #define HAVE_INTERNET 1 | #define SUPPORT_LIBXML 1 | #define HAVE_JPEG 1 | #define HAVE_PNG 1 | #define HAVE_POSIX_LEAPSECONDS 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_STRUCT_STAT_ST_ATIM_TV_NSEC 1 | #define TYPEOF_STRUCT_STAT_ST_ATIM_IS_STRUCT_TIMESPEC 1 | #define HAVE_SETITIMER 1 | #define R_PROFILING 1 | #define HAVE_FSEEKO 1 | #define NVALGRIND 1 | #define VALGRIND_LEVEL 0 | #define HAVE_LIBC_STACK_END 1 | #define R_PRINTCMD "lpr" | #define SUPPORT_OPENMP 1 | #define HAVE_VISIBILITY 1 | #define HAVE_STDINT_H_WITH_UINTMAX 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define INTDIV0_RAISES_SIGFPE 1 | #define HAVE_INTTYPES_H_WITH_UINTMAX 1 | #define HAVE_UNSIGNED_LONG_LONG_INT 1 | #define HAVE_UNSIGNED_LONG_LONG 1 | #define HAVE_UINTMAX_T 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_ARGZ_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEGID 1 | #define HAVE_GETEUID 1 | #define HAVE_GETGID 1 | #define HAVE_GETUID 1 | #define HAVE_MEMPCPY 1 | #define HAVE_MUNMAP 1 | #define HAVE_STPCPY 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRTOUL 1 | #define HAVE_TSEARCH 1 | #define HAVE_ARGZ_COUNT 1 | #define HAVE_ARGZ_STRINGIFY 1 | #define HAVE_ARGZ_NEXT 1 | #define HAVE___FSETLOCKING 1 | #define HAVE_DECL_FEOF_UNLOCKED 1 | #define HAVE_DECL_FGETS_UNLOCKED 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_NL_LOCALE_NAME 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_WCHAR_T 1 | #define HAVE_WINT_T 1 | #define HAVE_INTMAX_T 1 | #define HAVE_POSIX_PRINTF 1 | #define HAVE_STDINT_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_ASPRINTF 1 | #define HAVE_FWPRINTF 1 | #define HAVE_PUTENV 1 | #define HAVE_SETENV 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SNPRINTF 1 | #define HAVE_WCSLEN 1 | /* end confdefs.h. */ | #include | #ifdef F77_DUMMY_MAIN | | # ifdef __cplusplus | extern "C" | # endif | int F77_DUMMY_MAIN() { return 1; } | | #endif | int | main () | { | | #ifndef _snprintf | char *p = (char *) _snprintf; | #endif | | ; | return 0; | } configure:41639: result: no configure:41653: checking whether _snwprintf is declared configure:41681: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c: In function 'main': conftest.c:323: error: '_snwprintf' undeclared (first use in this function) conftest.c:323: error: (Each undeclared identifier is reported only once conftest.c:323: error: for each function it appears in.) configure:41681: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.1.1" | #define PACKAGE_STRING "R 3.1.1" | #define PACKAGE_BUGREPORT "http://bugs.r-project.org" | #define PACKAGE_URL "http://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.1.1" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define HAVE_READLINE_HISTORY_H 1 | #define HAVE_READLINE_READLINE_H 1 | #define HAVE_LIBREADLINE 1 | #define HAVE_HISTORY_TRUNCATE_FILE 1 | #define HAVE_RL_COMPLETION_MATCHES 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_MATHERR 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | #define HAVE_WORKING_CALLOC 1 | #define HAVE_WORKING_ISFINITE 1 | #define HAVE_WORKING_LOG1P 1 | #define HAVE_WORKING_FTELL 1 | #define HAVE_WORKING_SIGACTION 1 | #define HAVE_WORKING_64BIT_MKTIME 1 | #define HAVE_CABS 1 | #define HAVE_CARG 1 | #define HAVE_CEXP 1 | #define HAVE_CLOG 1 | #define HAVE_CSQRT 1 | #define HAVE_CPOW 1 | #define HAVE_CCOS 1 | #define HAVE_CSIN 1 | #define HAVE_CTAN 1 | #define HAVE_CACOS 1 | #define HAVE_CASIN 1 | #define HAVE_CATAN 1 | #define HAVE_CCOSH 1 | #define HAVE_CSINH 1 | #define HAVE_CTANH 1 | #define HAVE_TM_ZONE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_ICONV_H 1 | #define HAVE_ICONV 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_WCHAR_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_MBRTOWC 1 | #define HAVE_WCRTOMB 1 | #define HAVE_WCSCOLL 1 | #define HAVE_WCSFTIME 1 | #define HAVE_WCSTOD 1 | #define HAVE_MBSTOWCS 1 | #define HAVE_WCSTOMBS 1 | #define HAVE_WCTRANS 1 | #define HAVE_ISWBLANK 1 | #define HAVE_WCTYPE 1 | #define HAVE_ISWCTYPE 1 | #define HAVE_WCTRANS_T 1 | #define HAVE_MBSTATE_T 1 | #define HAVE_X11 1 | #define HAVE_KEYSYM 1 | #define HAVE_CAIRO_PDF 1 | #define HAVE_CAIRO_PS 1 | #define HAVE_CAIRO_SVG 1 | #define HAVE_BSD_NETWORKING 1 | #define HAVE_SOCKETS 1 | #define HAVE_INTERNET 1 | #define SUPPORT_LIBXML 1 | #define HAVE_JPEG 1 | #define HAVE_PNG 1 | #define HAVE_POSIX_LEAPSECONDS 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_STRUCT_STAT_ST_ATIM_TV_NSEC 1 | #define TYPEOF_STRUCT_STAT_ST_ATIM_IS_STRUCT_TIMESPEC 1 | #define HAVE_SETITIMER 1 | #define R_PROFILING 1 | #define HAVE_FSEEKO 1 | #define NVALGRIND 1 | #define VALGRIND_LEVEL 0 | #define HAVE_LIBC_STACK_END 1 | #define R_PRINTCMD "lpr" | #define SUPPORT_OPENMP 1 | #define HAVE_VISIBILITY 1 | #define HAVE_STDINT_H_WITH_UINTMAX 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define INTDIV0_RAISES_SIGFPE 1 | #define HAVE_INTTYPES_H_WITH_UINTMAX 1 | #define HAVE_UNSIGNED_LONG_LONG_INT 1 | #define HAVE_UNSIGNED_LONG_LONG 1 | #define HAVE_UINTMAX_T 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_ARGZ_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEGID 1 | #define HAVE_GETEUID 1 | #define HAVE_GETGID 1 | #define HAVE_GETUID 1 | #define HAVE_MEMPCPY 1 | #define HAVE_MUNMAP 1 | #define HAVE_STPCPY 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRTOUL 1 | #define HAVE_TSEARCH 1 | #define HAVE_ARGZ_COUNT 1 | #define HAVE_ARGZ_STRINGIFY 1 | #define HAVE_ARGZ_NEXT 1 | #define HAVE___FSETLOCKING 1 | #define HAVE_DECL_FEOF_UNLOCKED 1 | #define HAVE_DECL_FGETS_UNLOCKED 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_NL_LOCALE_NAME 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_WCHAR_T 1 | #define HAVE_WINT_T 1 | #define HAVE_INTMAX_T 1 | #define HAVE_POSIX_PRINTF 1 | #define HAVE_STDINT_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_ASPRINTF 1 | #define HAVE_FWPRINTF 1 | #define HAVE_PUTENV 1 | #define HAVE_SETENV 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SNPRINTF 1 | #define HAVE_WCSLEN 1 | #define HAVE_DECL__SNPRINTF 0 | /* end confdefs.h. */ | #include | #ifdef F77_DUMMY_MAIN | | # ifdef __cplusplus | extern "C" | # endif | int F77_DUMMY_MAIN() { return 1; } | | #endif | int | main () | { | | #ifndef _snwprintf | char *p = (char *) _snwprintf; | #endif | | ; | return 0; | } configure:41688: result: no configure:41703: checking whether getc_unlocked is declared configure:41731: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:41731: $? = 0 configure:41738: result: yes configure:41777: checking for nl_langinfo and CODESET configure:41810: result: yes configure:41819: checking for LC_MESSAGES configure:41843: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:41843: $? = 0 configure:41851: result: yes configure:41875: checking for shared library run path origin configure:41888: result: done configure:41920: checking for CFPreferencesCopyAppValue configure:41955: result: no configure:41962: checking for CFLocaleCopyCurrent configure:41997: result: no configure:42032: checking whether included gettext is requested configure:42042: result: no configure:42065: checking for GNU gettext in libc configure:42093: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:42093: $? = 0 configure:42102: result: yes configure:42624: checking whether to use NLS configure:42626: result: yes configure:42629: checking where the gettext function comes from configure:42640: result: libc configure:42770: result: using as R_SHELL for scripts ... /bin/sh configure:43070: creating ./config.status ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by R config.status 3.1.1, which was generated by GNU Autoconf 2.69. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status on mus config.status:1889: creating Makeconf config.status:1889: creating Makefile config.status:1889: creating doc/Makefile config.status:1889: creating doc/html/Makefile config.status:1889: creating doc/manual/Makefile config.status:1889: creating etc/Makefile config.status:1889: creating etc/Makeconf config.status:1889: creating etc/Renviron config.status:1889: creating etc/javaconf config.status:1889: creating etc/ldpaths config.status:1889: creating m4/Makefile config.status:1889: creating po/Makefile config.status:1889: creating share/Makefile config.status:1889: creating src/Makefile config.status:1889: creating src/appl/Makefile config.status:1889: creating src/extra/Makefile config.status:1889: creating src/extra/blas/Makefile config.status:1889: creating src/extra/bzip2/Makefile config.status:1889: creating src/extra/intl/Makefile config.status:1889: creating src/extra/pcre/Makefile config.status:1889: creating src/extra/tre/Makefile config.status:1889: creating src/extra/tzone/Makefile config.status:1889: creating src/extra/xdr/Makefile config.status:1889: creating src/extra/xz/Makefile config.status:1889: creating src/extra/zlib/Makefile config.status:1889: creating src/include/Makefile config.status:1889: creating src/include/Rmath.h0 config.status:1889: creating src/include/R_ext/Makefile config.status:1889: creating src/library/Recommended/Makefile config.status:1889: creating src/library/Makefile config.status:1889: creating src/library/base/DESCRIPTION config.status:1889: creating src/library/base/Makefile config.status:1889: creating src/library/compiler/DESCRIPTION config.status:1889: creating src/library/compiler/Makefile config.status:1889: creating src/library/datasets/DESCRIPTION config.status:1889: creating src/library/datasets/Makefile config.status:1889: creating src/library/graphics/DESCRIPTION config.status:1889: creating src/library/graphics/Makefile config.status:1889: creating src/library/graphics/src/Makefile config.status:1889: creating src/library/grDevices/DESCRIPTION config.status:1889: creating src/library/grDevices/Makefile config.status:1889: creating src/library/grDevices/src/Makefile config.status:1889: creating src/library/grDevices/src/cairo/Makefile config.status:1889: creating src/library/grid/DESCRIPTION config.status:1889: creating src/library/grid/Makefile config.status:1889: creating src/library/grid/src/Makefile config.status:1889: creating src/library/methods/DESCRIPTION config.status:1889: creating src/library/methods/Makefile config.status:1889: creating src/library/methods/src/Makefile config.status:1889: creating src/library/parallel/DESCRIPTION config.status:1889: creating src/library/parallel/Makefile config.status:1889: creating src/library/parallel/src/Makefile config.status:1889: creating src/library/profile/Makefile config.status:1889: creating src/library/stats/DESCRIPTION config.status:1889: creating src/library/stats/Makefile config.status:1889: creating src/library/stats/src/Makefile config.status:1889: creating src/library/stats4/DESCRIPTION config.status:1889: creating src/library/stats4/Makefile config.status:1889: creating src/library/splines/DESCRIPTION config.status:1889: creating src/library/splines/Makefile config.status:1889: creating src/library/splines/src/Makefile config.status:1889: creating src/library/tcltk/DESCRIPTION config.status:1889: creating src/library/tcltk/Makefile config.status:1889: creating src/library/tcltk/src/Makefile config.status:1889: creating src/library/tools/DESCRIPTION config.status:1889: creating src/library/tools/Makefile config.status:1889: creating src/library/tools/src/Makefile config.status:1889: creating src/library/translations/DESCRIPTION config.status:1889: creating src/library/translations/Makefile config.status:1889: creating src/library/utils/DESCRIPTION config.status:1889: creating src/library/utils/Makefile config.status:1889: creating src/library/utils/src/Makefile config.status:1889: creating src/main/Makefile config.status:1889: creating src/modules/Makefile config.status:1889: creating src/modules/X11/Makefile config.status:1889: creating src/modules/internet/Makefile config.status:1889: creating src/modules/lapack/Makefile config.status:1889: creating src/modules/vfonts/Makefile config.status:1889: creating src/nmath/Makefile config.status:1889: creating src/nmath/standalone/Makefile config.status:1889: creating src/scripts/Makefile config.status:1889: creating src/scripts/R.sh config.status:1889: creating src/scripts/Rcmd config.status:1889: creating src/scripts/f77_f2c config.status:1889: creating src/scripts/javareconf config.status:1889: creating src/scripts/mkinstalldirs config.status:1889: creating src/scripts/pager config.status:1889: creating src/scripts/rtags config.status:1889: creating src/unix/Makefile config.status:1889: creating tests/Makefile config.status:1889: creating tests/Embedding/Makefile config.status:1889: creating tests/Examples/Makefile config.status:1889: creating tools/Makefile config.status:1889: creating src/include/config.h config.status:2074: executing libtool commands config.status:2074: executing stamp-h commands configure:46257: result: R is now configured for x86_64-unknown-linux-gnu Source directory: .. Installation directory: /data C compiler: gcc -std=gnu99 -g -O2 Fortran 77 compiler: gfortran -g -O2 C++ compiler: g++ -g -O2 C++ 11 compiler: g++ -std=c++0x -g -O2 Fortran 90/95 compiler: gfortran -g -O2 Obj-C compiler: Interfaces supported: X11 External libraries: readline Additional capabilities: PNG, JPEG, NLS Options enabled: shared BLAS, R profiling Recommended packages: yes ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-unknown-linux-gnu ac_cv_c_bigendian=no ac_cv_c_compiler_gnu=yes ac_cv_c_const=yes ac_cv_c_inline=inline ac_cv_c_uint64_t=yes ac_cv_cxx_compiler_gnu=yes ac_cv_env_BLAS_LIBS_set= ac_cv_env_BLAS_LIBS_value= ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPICFLAGS_set= ac_cv_env_CPICFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXX1XFLAGS_set= ac_cv_env_CXX1XFLAGS_value= ac_cv_env_CXX1XPICFLAGS_set= ac_cv_env_CXX1XPICFLAGS_value= ac_cv_env_CXX1XSTD_set= ac_cv_env_CXX1XSTD_value= ac_cv_env_CXX1X_set= ac_cv_env_CXX1X_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXXPICFLAGS_set= ac_cv_env_CXXPICFLAGS_value= ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_DEFS_set= ac_cv_env_DEFS_value= ac_cv_env_DYLIB_LDFLAGS_set= ac_cv_env_DYLIB_LDFLAGS_value= ac_cv_env_DYLIB_LD_set= ac_cv_env_DYLIB_LD_value= ac_cv_env_F77_set= ac_cv_env_F77_value= ac_cv_env_FCFLAGS_set= ac_cv_env_FCFLAGS_value= ac_cv_env_FCPICFLAGS_set= ac_cv_env_FCPICFLAGS_value= ac_cv_env_FC_set= ac_cv_env_FC_value= ac_cv_env_FFLAGS_set= ac_cv_env_FFLAGS_value= ac_cv_env_FPICFLAGS_set= ac_cv_env_FPICFLAGS_value= ac_cv_env_JAVA_HOME_set= ac_cv_env_JAVA_HOME_value= ac_cv_env_LAPACK_LIBS_set= ac_cv_env_LAPACK_LIBS_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_LIBnn_set= ac_cv_env_LIBnn_value= ac_cv_env_MAIN_CFLAGS_set= ac_cv_env_MAIN_CFLAGS_value= ac_cv_env_MAIN_FFLAGS_set= ac_cv_env_MAIN_FFLAGS_value= ac_cv_env_MAIN_LDFLAGS_set= ac_cv_env_MAIN_LDFLAGS_value= ac_cv_env_MAIN_LD_set= ac_cv_env_MAIN_LD_value= ac_cv_env_MAKE_set= ac_cv_env_MAKE_value= ac_cv_env_OBJCFLAGS_set= ac_cv_env_OBJCFLAGS_value= ac_cv_env_OBJC_set= ac_cv_env_OBJC_value= ac_cv_env_R_BATCHSAVE_set= ac_cv_env_R_BATCHSAVE_value= ac_cv_env_R_BROWSER_set= ac_cv_env_R_BROWSER_value= ac_cv_env_R_PAPERSIZE_set= ac_cv_env_R_PAPERSIZE_value= ac_cv_env_R_PDFVIEWER_set= ac_cv_env_R_PDFVIEWER_value= ac_cv_env_R_PRINTCMD_set= ac_cv_env_R_PRINTCMD_value= ac_cv_env_R_SHELL_set= ac_cv_env_R_SHELL_value= ac_cv_env_SAFE_FFLAGS_set= ac_cv_env_SAFE_FFLAGS_value= ac_cv_env_SHLIB_CFLAGS_set= ac_cv_env_SHLIB_CFLAGS_value= ac_cv_env_SHLIB_CXX1XLDFLAGS_set= ac_cv_env_SHLIB_CXX1XLDFLAGS_value= ac_cv_env_SHLIB_CXX1XLD_set= ac_cv_env_SHLIB_CXX1XLD_value= ac_cv_env_SHLIB_CXXLDFLAGS_set= ac_cv_env_SHLIB_CXXLDFLAGS_value= ac_cv_env_SHLIB_CXXLD_set= ac_cv_env_SHLIB_CXXLD_value= ac_cv_env_SHLIB_FCLDFLAGS_set= ac_cv_env_SHLIB_FCLDFLAGS_value= ac_cv_env_SHLIB_FCLD_set= ac_cv_env_SHLIB_FCLD_value= ac_cv_env_SHLIB_FFLAGS_set= ac_cv_env_SHLIB_FFLAGS_value= ac_cv_env_SHLIB_LDFLAGS_set= ac_cv_env_SHLIB_LDFLAGS_value= ac_cv_env_SHLIB_LD_set= ac_cv_env_SHLIB_LD_value= ac_cv_env_TAR_set= ac_cv_env_TAR_value= ac_cv_env_TCLTK_CPPFLAGS_set= ac_cv_env_TCLTK_CPPFLAGS_value= ac_cv_env_TCLTK_LIBS_set= ac_cv_env_TCLTK_LIBS_value= ac_cv_env_XMKMF_set= ac_cv_env_XMKMF_value= ac_cv_env_YACC_set= ac_cv_env_YACC_value= ac_cv_env_YFLAGS_set= ac_cv_env_YFLAGS_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_r_arch_set= ac_cv_env_r_arch_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_f77_compiler_gnu=yes ac_cv_f77_dummy_main=none ac_cv_f77_libs=' -L/usr/local/lib64 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.5 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.5/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.5/../../.. -L/usr/lib/x86_64-linux-gnu -lgfortranbegin -lgfortran -lm' ac_cv_f77_mangling='lower case, underscore, no extra underscore' ac_cv_fc_compiler_gnu=yes ac_cv_fc_srcext_f90=none ac_cv_fc_srcext_f95=none ac_cv_fortran_dummy_main=none ac_cv_func___fsetlocking=yes ac_cv_func___setfpucw=no ac_cv_func_alloca_works=yes ac_cv_func_argz_count=yes ac_cv_func_argz_next=yes ac_cv_func_argz_stringify=yes ac_cv_func_asprintf=yes ac_cv_func_atan2pi=no ac_cv_func_atanpi=no ac_cv_func_connect=yes ac_cv_func_cospi=no ac_cv_func_exp10=yes ac_cv_func_fseeko=yes ac_cv_func_ftello=yes ac_cv_func_fwprintf=yes ac_cv_func_getcwd=yes ac_cv_func_getegid=yes ac_cv_func_geteuid=yes ac_cv_func_getgid=yes ac_cv_func_gethostbyname=yes ac_cv_func_getpagesize=yes ac_cv_func_getuid=yes ac_cv_func_history_truncate_file=yes ac_cv_func_iconv=yes ac_cv_func_iconvlist=no ac_cv_func_isblank=yes ac_cv_func_isnan=yes ac_cv_func_matherr=yes ac_cv_func_mempcpy=yes ac_cv_func_mkdtemp=yes ac_cv_func_mmap_fixed_mapped=yes ac_cv_func_munmap=yes ac_cv_func_pown=no ac_cv_func_putenv=yes ac_cv_func_realpath=yes ac_cv_func_remove=yes ac_cv_func_setenv=yes ac_cv_func_setitimer=yes ac_cv_func_setlocale=yes ac_cv_func_shmat=yes ac_cv_func_sinpi=no ac_cv_func_snprintf=yes ac_cv_func_stpcpy=yes ac_cv_func_strcasecmp=yes ac_cv_func_strdup=yes ac_cv_func_strncasecmp=yes ac_cv_func_strtoul=yes ac_cv_func_tanpi=no ac_cv_func_tsearch=yes ac_cv_func_vasprintf=yes ac_cv_func_wcslen=yes ac_cv_gnu_library_2=yes ac_cv_gnu_library_2_1=yes ac_cv_have_decl__snprintf=no ac_cv_have_decl__snwprintf=no ac_cv_have_decl_access=yes ac_cv_have_decl_alloca=yes ac_cv_have_decl_cabs=yes ac_cv_have_decl_cacos=yes ac_cv_have_decl_carg=yes ac_cv_have_decl_casin=yes ac_cv_have_decl_catan=yes ac_cv_have_decl_ccos=yes ac_cv_have_decl_ccosh=yes ac_cv_have_decl_cexp=yes ac_cv_have_decl_chdir=yes ac_cv_have_decl_chmod=yes ac_cv_have_decl_clock_gettime=yes ac_cv_have_decl_clog=yes ac_cv_have_decl_cpow=yes ac_cv_have_decl_csin=yes ac_cv_have_decl_csinh=yes ac_cv_have_decl_csqrt=yes ac_cv_have_decl_ctan=yes ac_cv_have_decl_ctanh=yes ac_cv_have_decl_execv=yes ac_cv_have_decl_expm1=yes ac_cv_have_decl_fcntl=yes ac_cv_have_decl_fdopen=yes ac_cv_have_decl_feof_unlocked=yes ac_cv_have_decl_fgets_unlocked=yes ac_cv_have_decl_ftruncate=yes ac_cv_have_decl_getc_unlocked=yes ac_cv_have_decl_getcwd=yes ac_cv_have_decl_geteuid=yes ac_cv_have_decl_getgrgid=yes ac_cv_have_decl_getpriority=yes ac_cv_have_decl_getpwuid=yes ac_cv_have_decl_getrlimit=yes ac_cv_have_decl_getrusage=yes ac_cv_have_decl_gettimeofday=yes ac_cv_have_decl_getuid=yes ac_cv_have_decl_glob=yes ac_cv_have_decl_gmtime_r=yes ac_cv_have_decl_hypot=yes ac_cv_have_decl_isfinite=yes ac_cv_have_decl_isnan=yes ac_cv_have_decl_iswblank=yes ac_cv_have_decl_iswctype=yes ac_cv_have_decl_kill=yes ac_cv_have_decl_link=yes ac_cv_have_decl_localtime_r=yes ac_cv_have_decl_log10=yes ac_cv_have_decl_log1p=yes ac_cv_have_decl_log1pl=yes ac_cv_have_decl_log2=yes ac_cv_have_decl_mbrtowc=yes ac_cv_have_decl_mbstowcs=yes ac_cv_have_decl_mkdtemp=yes ac_cv_have_decl_mkfifo=yes ac_cv_have_decl_nearbyint=yes ac_cv_have_decl_nearbyintl=yes ac_cv_have_decl_nl_langinfo=yes ac_cv_have_decl_popen=yes ac_cv_have_decl_powl=yes ac_cv_have_decl_putenv=yes ac_cv_have_decl_readlink=yes ac_cv_have_decl_realpath=yes ac_cv_have_decl_rint=yes ac_cv_have_decl_rintl=yes ac_cv_have_decl_rl_completion_matches=yes ac_cv_have_decl_sched_getaffinity=yes ac_cv_have_decl_sched_setaffinity=yes ac_cv_have_decl_setenv=yes ac_cv_have_decl_sigaction=yes ac_cv_have_decl_sigaltstack=yes ac_cv_have_decl_sigemptyset=yes ac_cv_have_decl_siglongjmp=yes ac_cv_have_decl_sigsetjmp=yes ac_cv_have_decl_stat=yes ac_cv_have_decl_strdup=yes ac_cv_have_decl_strncasecmp=yes ac_cv_have_decl_symlink=yes ac_cv_have_decl_sysconf=yes ac_cv_have_decl_times=yes ac_cv_have_decl_timespec_get=no ac_cv_have_decl_umask=yes ac_cv_have_decl_unsetenv=yes ac_cv_have_decl_utime=yes ac_cv_have_decl_utimes=yes ac_cv_have_decl_va_copy=yes ac_cv_have_decl_vasprintf=yes ac_cv_have_decl_wcrtomb=yes ac_cv_have_decl_wcscoll=yes ac_cv_have_decl_wcsftime=yes ac_cv_have_decl_wcstod=yes ac_cv_have_decl_wcstombs=yes ac_cv_have_decl_wctrans=yes ac_cv_have_decl_wctype=yes ac_cv_have_x='have_x=yes ac_x_includes='\'''\'' ac_x_libraries='\'''\''' ac_cv_header_X11_Intrinsic_h=yes ac_cv_header_X11_Xmu_Atoms_h=no ac_cv_header_argz_h=yes ac_cv_header_arpa_inet_h=yes ac_cv_header_complex_h=yes ac_cv_header_dirent_dirent_h=yes ac_cv_header_dl_h=no ac_cv_header_dlfcn_h=yes ac_cv_header_elf_h=yes ac_cv_header_errno_h=yes ac_cv_header_fcntl_h=yes ac_cv_header_floatingpoint_h=no ac_cv_header_fpu_control_h=yes ac_cv_header_glob_h=yes ac_cv_header_grp_h=yes ac_cv_header_iconv_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_langinfo_h=yes ac_cv_header_limits_h=yes ac_cv_header_locale_h=yes ac_cv_header_memory_h=yes ac_cv_header_minix_config_h=no ac_cv_header_netdb_h=yes ac_cv_header_netinet_in_h=yes ac_cv_header_pwd_h=yes ac_cv_header_readline_history_h=yes ac_cv_header_readline_readline_h=yes ac_cv_header_rpc_types_h=yes ac_cv_header_rpc_xdr_h=yes ac_cv_header_sched_h=yes ac_cv_header_stdarg_h=yes ac_cv_header_stdbool_h=yes ac_cv_header_stdc=yes ac_cv_header_stddef_h=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sunmath_h=no ac_cv_header_sys_param_h=yes ac_cv_header_sys_resource_h=yes ac_cv_header_sys_select_h=yes ac_cv_header_sys_socket_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_time_h=yes ac_cv_header_sys_times_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_sys_utsname_h=yes ac_cv_header_sys_wait_h=yes ac_cv_header_tiffio_h=no ac_cv_header_unistd_h=yes ac_cv_header_utime_h=yes ac_cv_header_wchar_h=yes ac_cv_header_wctype_h=yes ac_cv_host=x86_64-unknown-linux-gnu ac_cv_lib_ICE_IceConnectionNumber=yes ac_cv_lib_Xt_XtToolkitInitialize=yes ac_cv_lib_dl_dlopen=yes ac_cv_lib_jpeg_jpeg_destroy_compress=yes ac_cv_lib_lzma_lzma_version_number=no ac_cv_lib_m_cos=yes ac_cv_lib_m_sin=yes ac_cv_lib_png_png_create_write_struct=yes ac_cv_lib_readline_rl_callback_read_char=yes ac_cv_lib_rt_clock_gettime=yes ac_cv_lib_sunmath_cospi=no ac_cv_lib_z_main=yes ac_cv_member_struct_stat_st_atim_tv_nsec=yes ac_cv_objc_compiler_gnu=no ac_cv_objext=o ac_cv_path_EGREP='/bin/grep -E' ac_cv_path_FGREP='/bin/grep -F' ac_cv_path_GETWD=/bin/pwd ac_cv_path_GREP=/bin/grep ac_cv_path_INSTALL_INFO=/usr/bin/ginstall-info ac_cv_path_KPSEWHICH=/usr/bin/kpsewhich ac_cv_path_MAKEINDEX=/usr/bin/makeindex ac_cv_path_MAKEINFO=/usr/bin/makeinfo ac_cv_path_NOTANGLE=false ac_cv_path_PAGER=/usr/bin/less ac_cv_path_PAPERCONF=/usr/bin/paperconf ac_cv_path_PDFLATEX=/usr/bin/pdflatex ac_cv_path_PDFTEX=/usr/bin/pdftex ac_cv_path_PKGCONF=/usr/bin/pkg-config ac_cv_path_REALPATH=false ac_cv_path_R_BROWSER=/home/lg/bin/firefox ac_cv_path_R_BZIPCMD=/bin/bzip2 ac_cv_path_R_GZIPCMD=/bin/gzip ac_cv_path_R_PDFVIEWER=/usr/bin/xdg-open ac_cv_path_R_UNZIPCMD=/usr/bin/unzip ac_cv_path_R_ZIPCMD=/usr/bin/zip ac_cv_path_SED=/bin/sed ac_cv_path_TAR=/bin/tar ac_cv_path_TEX=/usr/bin/tex ac_cv_path_TEXI2DVI=/usr/bin/texi2dvi ac_cv_path_WHICH=/usr/bin/which ac_cv_path_install='/usr/bin/install -c' ac_cv_path_mkdir=/bin/mkdir ac_cv_prog_AR=ar ac_cv_prog_AWK=gawk ac_cv_prog_CPP='gcc -E' ac_cv_prog_CXXCPP='g++ -E' ac_cv_prog_F77=gfortran ac_cv_prog_R_PRINTCMD=lpr ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_ac_ct_CXX=g++ ac_cv_prog_ac_ct_FC=gfortran ac_cv_prog_ac_ct_OBJC=gcc ac_cv_prog_ac_ct_OBJDUMP=objdump ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_c_openmp=-fopenmp ac_cv_prog_cc_c89= ac_cv_prog_cc_c99=-std=gnu99 ac_cv_prog_cc_g=yes ac_cv_prog_cc_stdc=-std=gnu99 ac_cv_prog_cxx_g=yes ac_cv_prog_cxx_openmp=-fopenmp ac_cv_prog_f77_g=yes ac_cv_prog_f77_openmp=-fopenmp ac_cv_prog_f77_v=-v ac_cv_prog_fc_g=yes ac_cv_prog_fc_openmp=-fopenmp ac_cv_prog_gcc_traditional=no ac_cv_prog_objc_g=no ac_cv_safe_to_define___extensions__=yes ac_cv_search_connect='none required' ac_cv_search_gethostbyname='none required' ac_cv_search_opendir='none required' ac_cv_search_xdr_string='none required' ac_cv_sizeof_double=8 ac_cv_sizeof_int=4 ac_cv_sizeof_long=8 ac_cv_sizeof_long_double=16 ac_cv_sizeof_long_long=8 ac_cv_sizeof_size_t=8 ac_cv_sys_file_offset_bits=no ac_cv_sys_largefile_CC=no ac_cv_sys_largefile_source=no ac_cv_type_KeySym=yes ac_cv_type_blkcnt_t=yes ac_cv_type_double_complex=yes ac_cv_type_int64_t=yes ac_cv_type_int_fast64_t=yes ac_cv_type_intptr_t=yes ac_cv_type_long_long_int=yes ac_cv_type_mbstate_t=yes ac_cv_type_off_t=yes ac_cv_type_pid_t=yes ac_cv_type_ptrdiff_t=yes ac_cv_type_signal=void ac_cv_type_size_t=yes ac_cv_type_stack_t=yes ac_cv_type_uintptr_t=yes ac_cv_type_unsigned_long_long=yes ac_cv_type_unsigned_long_long_int=yes ac_cv_type_wctrans_t=yes ac_cv_typeof_struct_stat_st_atim_is_struct_timespec=yes ac_cv_working_alloca_h=yes acl_cv_hardcode_direct=no acl_cv_hardcode_libdir_flag_spec='${wl}-rpath ${wl}$libdir' acl_cv_hardcode_libdir_separator= acl_cv_hardcode_minus_L=no acl_cv_libext=a acl_cv_libname_spec='lib$name' acl_cv_library_names_spec='$libname$shrext' acl_cv_rpath=done acl_cv_shlibext=so acl_cv_wl=-Wl, am_cv_func_iconv=yes am_cv_langinfo_codeset=yes am_cv_lib_iconv=no am_cv_proto_iconv='extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);' am_cv_proto_iconv_arg1= ax_cv_cxx_compile_cxx11=no ax_cv_cxx_compile_cxx11__std_cpp0x=yes ax_cv_cxx_compile_cxx11__std_cpp11=no gl_cv_cc_visibility=yes gl_cv_header_inttypes_h=yes gl_cv_header_stdint_h=yes gl_cv_size_max=yes gt_cv_c_intmax_t=yes gt_cv_c_long_double=yes gt_cv_c_wchar_t=yes gt_cv_c_wint_t=yes gt_cv_func_CFLocaleCopyCurrent=no gt_cv_func_CFPreferencesCopyAppValue=no gt_cv_func_gnugettext2_libc=yes gt_cv_func_printf_posix=yes gt_cv_int_divbyzero_sigfpe=yes gt_cv_inttypes_pri_broken=no gt_cv_nl_locale_name=yes gt_cv_val_LC_MESSAGES=yes lt_cv_deplibs_check_method=pass_all lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_ld_reload_flag=-r lt_cv_nm_interface='BSD nm' lt_cv_objdir=.libs lt_cv_path_LD=/usr/bin/ld lt_cv_path_LDCXX=/usr/bin/ld lt_cv_path_NM='/usr/bin/nm -B' lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_c_o_CXX=yes lt_cv_prog_compiler_c_o_F77=yes lt_cv_prog_compiler_c_o_FC=yes lt_cv_prog_compiler_pic_works=yes lt_cv_prog_compiler_pic_works_CXX=yes lt_cv_prog_compiler_pic_works_F77=yes lt_cv_prog_compiler_pic_works_FC=yes lt_cv_prog_compiler_rtti_exceptions=no lt_cv_prog_compiler_static_works=yes lt_cv_prog_compiler_static_works_CXX=yes lt_cv_prog_compiler_static_works_F77=yes lt_cv_prog_compiler_static_works_FC=yes lt_cv_prog_gnu_ld=yes lt_cv_prog_gnu_ldcxx=yes lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\''' lt_cv_sys_max_cmd_len=1572864 nls_cv_force_use_gnu_gettext=no nls_cv_header_intl= nls_cv_header_libgt= nls_cv_use_gnu_gettext=no r_cv_OBJCXX= r_cv_bsd_networking=yes r_cv_c_inline=inline r_cv_c_libs=' -L/usr/local/lib64 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.5 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.5/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.5/../../.. -L/usr/lib/x86_64-linux-gnu -lgcc_s' r_cv_c_no_math_inlines=no r_cv_cairo_works=no r_cv_check_fw_save_LIBS='-lrt -ldl -lm ' r_cv_check_fw_vecLib=no r_cv_func_calloc_works=yes r_cv_func_isfinite_works=yes r_cv_func_log1p_works=yes r_cv_func_sigaction_works=yes r_cv_has_cairo=yes r_cv_has_pangocairo=no r_cv_have_tm_gmtoff=yes r_cv_have_tm_zone=yes r_cv_header_glibc2=yes r_cv_header_jpeglib_h=yes r_cv_header_png_h=yes r_cv_header_setjmp_posix=yes r_cv_header_tcl_h=no r_cv_iconv_latin1=yes r_cv_icu=no r_cv_ieee_754=yes r_cv_kern_usrstack=no r_cv_libc_stack_end=yes r_cv_misc_recommended_packages=yes r_cv_mktime_errno=no r_cv_objc_runtime=none r_cv_prog_c_v=-v r_cv_prog_cc_c_o_lo=yes r_cv_prog_cc_m='$(CC) -MM' r_cv_prog_cc_vis=yes r_cv_prog_cxx_m=yes r_cv_prog_f77_append_second_underscore=no r_cv_prog_f77_append_underscore=yes r_cv_prog_f77_can_run=yes r_cv_prog_f77_cc_compat=yes r_cv_prog_f77_cc_compat_complex=yes r_cv_prog_f77_vis=yes r_cv_prog_makeinfo_v4=yes r_cv_prog_objc_flag__fobjc_exceptions=no r_cv_putenv_unset2=no r_cv_putenv_unset=yes r_cv_size_max=yes r_cv_sys_posix_leapseconds=yes r_cv_type_keysym=yes r_cv_type_socklen=socklen_t r_cv_visibility_attribute=yes r_cv_working_ftell=yes r_cv_working_mktime=yes r_cv_zlib_mmap=yes ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='aclocal' ALLOCA='' AR='ar' ARFLAGS='rc' AUTOCONF='autoconf' AUTOHEADER='autoheader' AUTOMAKE='automake' AWK='gawk' BITMAP_LIBS='-ljpeg -lpng -lz' BLAS_LIBS0='' BLAS_LIBS='-L$(R_HOME)/lib$(R_ARCH) -lRblas' BLAS_SHLIB_FALSE='#' BLAS_SHLIB_TRUE='' BUILDDIR_IS_SRCDIR='no' BUILD_AQUA_FALSE='' BUILD_AQUA_TRUE='#' BUILD_BZLIB_FALSE='#' BUILD_BZLIB_TRUE='' BUILD_CC='' BUILD_CYGWIN_FALSE='' BUILD_CYGWIN_TRUE='#' BUILD_DEVCAIRO_FALSE='' BUILD_DEVCAIRO_TRUE='#' BUILD_HTML_FALSE='' BUILD_HTML_TRUE='#' BUILD_INCLUDED_LIBINTL='no' BUILD_LIBINTL_FALSE='' BUILD_LIBINTL_TRUE='#' BUILD_LTO_FALSE='' BUILD_LTO_TRUE='#' BUILD_PCRE_FALSE='#' BUILD_PCRE_TRUE='' BUILD_R='' BUILD_TRE_FALSE='#' BUILD_TRE_TRUE='' BUILD_TZONE_FALSE='' BUILD_TZONE_TRUE='#' BUILD_X11_FALSE='#' BUILD_X11_TRUE='' BUILD_XDR_FALSE='' BUILD_XDR_TRUE='#' BUILD_XZ_FALSE='#' BUILD_XZ_TRUE='' BUILD_ZLIB_FALSE='#' BUILD_ZLIB_TRUE='' BYTE_COMPILE_PACKAGES_FALSE='#' BYTE_COMPILE_PACKAGES_TRUE='' CAIROX11_CPPFLAGS='' CAIROX11_LIBS='-lpng12 -lfreetype -lz -lcairo -lX11 ' CAIRO_CPPFLAGS='' CAIRO_LIBS='' CATOBJEXT='.gmo' CC='gcc -std=gnu99' CFLAGS='-g -O2' CFLAG_VISIBILITY='-fvisibility=hidden' COMPILE_FORTRAN_DOUBLE_COMPLEX_FALSE='' COMPILE_FORTRAN_DOUBLE_COMPLEX_TRUE='#' CPICFLAGS='-fpic' CPP='gcc -E' CPPFLAGS='-I/usr/local/include' CROSS_COMPILING_FALSE='' CROSS_COMPILING_TRUE='#' CXX1X='g++' CXX1XFLAGS='-g -O2' CXX1XPICFLAGS='-fpic' CXX1XSTD=' -std=c++0x' CXX='g++' CXXCPP0='$(CXX) -E' CXXCPP='g++ -E' CXXFLAGS='-g -O2' CXXPICFLAGS='-fpic' C_VISIBILITY='-fvisibility=hidden' DATADIRNAME='share' DEFS='-DHAVE_CONFIG_H' DSYMUTIL='' DUMPBIN='' DYLIB_EXT='.so' DYLIB_LD='$(CC)' DYLIB_LDFLAGS='-shared -fopenmp' DYLIB_UNDEFINED_ALLOWED_FALSE='#' DYLIB_UNDEFINED_ALLOWED_TRUE='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/bin/grep -E' EXEEXT='' F77='gfortran' F77_VISIBILITY='-fvisibility=hidden' FC='gfortran' FCFLAGS='-g -O2' FCFLAGS_f90='' FCFLAGS_f95='' FCLIBS='' FCPICFLAGS='-fpic' FFLAGS='-g -O2' FGREP='/bin/grep -F' FLIBS=' -lgfortran -lm' FLIBS_IN_SO=' -lgfortran -lm' FOUNDATION_CPPFLAGS='' FOUNDATION_LIBS='' FPICFLAGS='-fpic' FW_VERSION='' GENCAT='gencat' GETWD='/bin/pwd' GLIBC21='yes' GLIBC2='yes' GREP='/bin/grep' HAVE_ASPRINTF='1' HAVE_CXX11='1' HAVE_FORTRAN_DOUBLE_COMPLEX='' HAVE_POSIX_PRINTF='1' HAVE_SNPRINTF='1' HAVE_VISIBILITY='1' HAVE_WPRINTF='0' INSTALL_DATA='${INSTALL} -m 644' INSTALL_INFO='/usr/bin/ginstall-info' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTOBJEXT='.mo' INTERNET_LIBS='' INTLBISON=':' INTLLIBS='' INTLOBJS='' INTL_LIBTOOL_SUFFIX_PREFIX='' INTL_MACOSX_LIBS='' JAR='' JAVA='' JAVAC='' JAVAH='' JAVA_CPPFLAGS0='' JAVA_HOME='' JAVA_LD_LIBRARY_PATH='' JAVA_LIBS0='' KPSEWHICH='/usr/bin/kpsewhich' LAPACK_LDFLAGS='' LAPACK_LIBS='-L$(R_HOME)/lib$(R_ARCH) -lRlapack' LD='/usr/bin/ld' LDFLAGS='-L/usr/local/lib64' LIBICONV='' LIBINTL='' LIBM='-lm' LIBMULTITHREAD='' LIBOBJS='' LIBPTH='' LIBR='' LIBR_LDFLAGS='' LIBS=' -lrt -ldl -lm' LIBTHREAD='' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LIBTOOL_DEPS='../tools/ltmain.sh' LIBnn='lib64' LIPO='' LN_S='ln -s' LTLIBICONV='' LTLIBINTL='' LTLIBMULTITHREAD='' LTLIBOBJS='' LTLIBPTH='' LTLIBTHREAD='' LTO='' LTOALL='' MAINTAINER_MODE_FALSE='' MAINTAINER_MODE_TRUE='#' MAIN_CFLAGS='' MAIN_FFLAGS='' MAIN_LD='$(CC)' MAIN_LDFLAGS='-Wl,--export-dynamic -fopenmp' MAJ_MIN_VERSION='3.1' MAKE='make' MAKEINDEX='/usr/bin/makeindex' MAKEINFO='/usr/bin/makeinfo' MKDIR_P='/bin/mkdir -p' NM='/usr/bin/nm -B' NMEDIT='' NOTANGLE='false' OBJC='' OBJCFLAGS='' OBJCXX='' OBJCXXFLAGS='' OBJC_LIBS='' OBJDUMP='objdump' OBJEXT='o' OPENMP_CFLAGS='-fopenmp' OPENMP_CXXFLAGS='-fopenmp' OPENMP_FCFLAGS='-fopenmp' OPENMP_FFLAGS='-fopenmp' OSF_SH_BUG='"${@}"' OTOOL64='' OTOOL='' PACKAGE='R' PACKAGE_BUGREPORT='http://bugs.r-project.org' PACKAGE_NAME='R' PACKAGE_STRING='R 3.1.1' PACKAGE_TARNAME='R' PACKAGE_URL='http://www.r-project.org' PACKAGE_VERSION='3.1.1' PAGER='/usr/bin/less' PAPERCONF='/usr/bin/paperconf' PATH_SEPARATOR=':' PDFLATEX='/usr/bin/pdflatex' PDFTEX='/usr/bin/pdftex' PKGCONF='/usr/bin/pkg-config' POSUB='po' PRI_MACROS_BROKEN='0' RANLIB='ranlib' RBLAS_LDFLAGS='' READLINE_LIBS='-lreadline ' REALPATH='false' RLAPACK_LDFLAGS='' RMATH_HAVE_EXPM1='# define HAVE_EXPM1 1' RMATH_HAVE_HYPOT='# define HAVE_HYPOT 1' RMATH_HAVE_LOG1P='# define HAVE_LOG1P 1' RMATH_HAVE_WORKING_LOG1P='# define HAVE_WORKING_LOG1P 1' R_ARCH='' R_BATCHSAVE='' R_BROWSER='/home/lg/bin/firefox' R_BZIPCMD='/bin/bzip2' R_CONFIG_ARGS=' '\''--prefix=/data'\''' R_DEFS='' R_GZIPCMD='/bin/gzip' R_JAVA_LD_LIBRARY_PATH='' R_LD_LIBRARY_PATH='/usr/local/lib64' R_OPENMP_CFLAGS='-fopenmp' R_OPENMP_FFLAGS='-fopenmp' R_OS='linux-gnu' R_OSTYPE='unix' R_PAPERSIZE='a4' R_PDFVIEWER='/usr/bin/xdg-open' R_PLATFORM='x86_64-unknown-linux-gnu' R_PRINTCMD='lpr' R_PROFILING='' R_RD4PDF='times,inconsolata,hyper' R_SHELL='/bin/sh' R_SYSTEM_ABI='linux,gcc,gxx,gfortran,?' R_UNZIPCMD='/usr/bin/unzip' R_XTRA_CFLAGS='' R_XTRA_CPPFLAGS2='-I$(R_INCLUDE_DIR)' R_XTRA_CPPFLAGS='' R_XTRA_CXXFLAGS='' R_XTRA_FFLAGS='' R_XTRA_LIBS='' R_ZIPCMD='/usr/bin/zip' Rshlibpath_var='LD_LIBRARY_PATH' SAFE_FFLAGS='-g -O2 -ffloat-store' SED='/bin/sed' SHELL='/bin/sh' SHLIB_CFLAGS='' SHLIB_CXX1XLD='$(CXX1X) $(CXX1XSTD)' SHLIB_CXX1XLDFLAGS='-shared' SHLIB_CXXFLAGS='' SHLIB_CXXLD='$(CXX)' SHLIB_CXXLDFLAGS='-shared' SHLIB_EXT='.so' SHLIB_FCLD='$(FC)' SHLIB_FCLDFLAGS='-shared' SHLIB_FFLAGS='' SHLIB_LD='$(CC)' SHLIB_LDFLAGS='-shared' SHLIB_LIBADD='' SHLIB_OPENMP_CFLAGS='-fopenmp' SHLIB_OPENMP_CXXFLAGS='-fopenmp' SHLIB_OPENMP_FCFLAGS='-fopenmp' SHLIB_OPENMP_FFLAGS='-fopenmp' STATICR1='-Wl,--whole-archive' STATICR2='-Wl,--no-whole-archive' STRIP='strip' TAR='/bin/tar' TCLTK_CPPFLAGS='' TCLTK_LIBS='' TCL_CONFIG='' TEX='/usr/bin/tex' TEXI2DVI='/usr/bin/texi2dvi' TEXI2DVICMD='/usr/bin/texi2dvi' TIRPC_CPPFLAGS='' TK_CONFIG='' USE_EXPORTFILES_FALSE='' USE_EXPORTFILES_TRUE='#' USE_EXTERNAL_BLAS_FALSE='' USE_EXTERNAL_BLAS_TRUE='#' USE_EXTERNAL_LAPACK_FALSE='' USE_EXTERNAL_LAPACK_TRUE='#' USE_ICU='' USE_ICU_APPLE='' USE_INCLUDED_LIBINTL='no' USE_MMAP_ZLIB_FALSE='#' USE_MMAP_ZLIB_TRUE='' USE_NLS='yes' USE_NLS_FALSE='#' USE_NLS_TRUE='' USE_RECOMMENDED_PACKAGES_FALSE='#' USE_RECOMMENDED_PACKAGES_TRUE='' USE_VECLIB_G95FIX_FALSE='' USE_VECLIB_G95FIX_TRUE='#' VERSION='3.1.1' WANT_R_FRAMEWORK_FALSE='' WANT_R_FRAMEWORK_TRUE='#' WANT_R_SHLIB_FALSE='' WANT_R_SHLIB_TRUE='#' WANT_R_STATIC_FALSE='' WANT_R_STATIC_TRUE='#' WHICH='/usr/bin/which' WOE32DLL='no' XMKMF='' XTRA_INTL_CPPFLAGS='' X_CFLAGS='' X_EXTRA_LIBS='' X_LIBS=' -lX11 -lXt' X_PRE_LIBS=' -lSM -lICE' YACC='yacc' YFLAGS='' ac_ct_CC='gcc' ac_ct_CXX='g++' ac_ct_DUMPBIN='' ac_ct_F77='' ac_ct_FC='gfortran' ac_ct_OBJC='gcc' bindir='${exec_prefix}/bin' build='x86_64-unknown-linux-gnu' build_alias='' build_cpu='x86_64' build_os='linux-gnu' build_vendor='unknown' config_opts=' '\''--prefix=/data'\''' custom_JAVA_CPPFLAGS='~autodetect~' custom_JAVA_HOME='' custom_JAVA_LD_LIBRARY_PATH='~autodetect~' custom_JAVA_LIBS='~autodetect~' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='${prefix}' host='x86_64-unknown-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='unknown' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' libdir='${exec_prefix}/${LIBnn}' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' lt_ECHO='echo' mandir='${datarootdir}/man' mkdir_p='/bin/mkdir -p' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/data' program_transform_name='s,x,x,' psdir='${docdir}' r_arch='' rdocdir='${rhome}/doc' rincludedir='${rhome}/include' rsharedir='${rhome}/share' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' shlibpath_var='LD_LIBRARY_PATH' striplib='strip --strip-unneeded' stripstaticlib='strip --strip-debug' sysconfdir='${prefix}/etc' target_alias='' use_tcltk='no' ## ------------------- ## ## File substitutions. ## ## ------------------- ## r_cc_lo_rules_frag='Makefrag.cc_lo' r_cc_rules_frag='Makefrag.cc' r_cxx_rules_frag='Makefrag.cxx' r_objc_rules_frag='Makefrag.m' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "R" #define PACKAGE_TARNAME "R" #define PACKAGE_VERSION "3.1.1" #define PACKAGE_STRING "R 3.1.1" #define PACKAGE_BUGREPORT "http://bugs.r-project.org" #define PACKAGE_URL "http://www.r-project.org" #define PACKAGE "R" #define VERSION "3.1.1" #define R_PLATFORM "x86_64-unknown-linux-gnu" #define R_CPU "x86_64" #define R_VENDOR "unknown" #define R_OS "linux-gnu" #define Unix 1 #define R_ARCH "" #define HAVE_VISIBILITY_ATTRIBUTE 1 #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define __EXTENSIONS__ 1 #define _ALL_SOURCE 1 #define _GNU_SOURCE 1 #define _POSIX_PTHREAD_SEMANTICS 1 #define _TANDEM_SOURCE 1 #define HAVE_DLFCN_H 1 #define LT_OBJDIR ".libs/" #define HAVE_LIBM 1 #define HAVE_LIBDL 1 #define HAVE_READLINE_HISTORY_H 1 #define HAVE_READLINE_READLINE_H 1 #define HAVE_LIBREADLINE 1 #define HAVE_HISTORY_TRUNCATE_FILE 1 #define HAVE_RL_COMPLETION_MATCHES 1 #define STDC_HEADERS 1 #define HAVE_DIRENT_H 1 #define HAVE_SYS_WAIT_H 1 #define HAVE_ARPA_INET_H 1 #define HAVE_DLFCN_H 1 #define HAVE_ELF_H 1 #define HAVE_FCNTL_H 1 #define HAVE_FPU_CONTROL_H 1 #define HAVE_GLOB_H 1 #define HAVE_GRP_H 1 #define HAVE_LANGINFO_H 1 #define HAVE_NETDB_H 1 #define HAVE_NETINET_IN_H 1 #define HAVE_PWD_H 1 #define HAVE_SCHED_H 1 #define HAVE_STRINGS_H 1 #define HAVE_SYS_PARAM_H 1 #define HAVE_SYS_RESOURCE_H 1 #define HAVE_SYS_SELECT_H 1 #define HAVE_SYS_SOCKET_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_SYS_TIME_H 1 #define HAVE_SYS_TIMES_H 1 #define HAVE_SYS_UTSNAME_H 1 #define HAVE_UNISTD_H 1 #define HAVE_UTIME_H 1 #define HAVE_ERRNO_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_LIMITS_H 1 #define HAVE_LOCALE_H 1 #define HAVE_STDARG_H 1 #define HAVE_STDBOOL_H 1 #define HAVE_STDINT_H 1 #define HAVE_STRING_H 1 #define HAVE_DECL_SIGSETJMP 1 #define HAVE_DECL_SIGLONGJMP 1 #define HAVE_POSIX_SETJMP 1 #define HAVE_GLIBC2 1 #define RETSIGTYPE void #define HAVE_INT64_T 1 #define HAVE_INT_FAST64_T 1 #define HAVE_DECL_SIZE_MAX 1 #define R_SOCKLEN_T socklen_t #define HAVE_STACK_T 1 #define HAVE_INTPTR_T 1 #define HAVE_UINTPTR_T 1 #define R_INLINE inline #define SIZEOF_INT 4 #define INT_32_BITS 1 #define SIZEOF_LONG 8 #define SIZEOF_LONG_LONG 8 #define SIZEOF_DOUBLE 8 #define SIZEOF_SIZE_T 8 #define HAVE_LONG_DOUBLE 1 #define SIZEOF_LONG_DOUBLE 16 #define F77_FUNC(name,NAME) name ## _ #define F77_FUNC_(name,NAME) name ## _ #define HAVE_F77_UNDERSCORE 1 #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 #define SHLIB_EXT ".so" #define HAVE_CXX11 1 #define HAVE_OPENMP 1 #define HAVE_OFF_T 1 #define HAVE_ALLOCA_H 1 #define HAVE_ALLOCA 1 #define HAVE_DECL_ALLOCA 1 #define HAVE_EXPM1 1 #define HAVE_HYPOT 1 #define HAVE_LOG1P 1 #define HAVE_LOG1PL 1 #define HAVE_LOG2 1 #define HAVE_LOG10 1 #define HAVE_NEARBYINT 1 #define HAVE_NEARBYINTL 1 #define HAVE_POWL 1 #define HAVE_RINT 1 #define HAVE_RINTL 1 #define HAVE_VA_COPY 1 #define HAVE_ISBLANK 1 #define HAVE_EXP10 1 #define HAVE_FSEEKO 1 #define HAVE_FTELLO 1 #define HAVE_MATHERR 1 #define HAVE_FCNTL 1 #define HAVE_GETGRGID 1 #define HAVE_GETPWUID 1 #define HAVE_KILL 1 #define HAVE_SIGACTION 1 #define HAVE_SIGALTSTACK 1 #define HAVE_SIGEMPTYSET 1 #define HAVE_FDOPEN 1 #define HAVE_POPEN 1 #define HAVE_SETENV 1 #define HAVE_UNSETENV 1 #define HAVE_GETRLIMIT 1 #define HAVE_GETRUSAGE 1 #define HAVE_GETPRIORITY 1 #define HAVE_CHMOD 1 #define HAVE_MKFIFO 1 #define HAVE_STAT 1 #define HAVE_UMASK 1 #define HAVE_GETTIMEOFDAY 1 #define HAVE_UTIMES 1 #define HAVE_TIMES 1 #define HAVE_GMTIME_R 1 #define HAVE_LOCALTIME_R 1 #define HAVE_NL_LANGINFO 1 #define HAVE_ACCESS 1 #define HAVE_CHDIR 1 #define HAVE_EXECV 1 #define HAVE_FTRUNCATE 1 #define HAVE_GETCWD 1 #define HAVE_GETEUID 1 #define HAVE_GETUID 1 #define HAVE_LINK 1 #define HAVE_READLINK 1 #define HAVE_SYMLINK 1 #define HAVE_SYSCONF 1 #define HAVE_SCHED_SETAFFINITY 1 #define HAVE_SCHED_GETAFFINITY 1 #define HAVE_UTIME 1 #define HAVE_LIBRT 1 #define HAVE_CLOCK_GETTIME 1 #define HAVE_PUTENV 1 #define HAVE_DECL_PUTENV 1 #define HAVE_VASPRINTF 1 #define HAVE_DECL_VASPRINTF 1 #define HAVE_MEMPCPY 1 #define HAVE_REALPATH 1 #define HAVE_DECL_REALPATH 1 #define HAVE_GLOB 1 #define HAVE_OFF_T 1 #define HAVE_ISNAN 1 #define HAVE_DECL_ISFINITE 1 #define HAVE_DECL_ISNAN 1 #define IEEE_754 1 #define HAVE_PUTENV_UNSET 1 #define HAVE_LANGINFO_CODESET 1 #define HAVE_MKDTEMP 1 #define HAVE_STRDUP 1 #define HAVE_STRNCASECMP 1 #define HAVE_DECL_MKDTEMP 1 #define HAVE_DECL_STRDUP 1 #define HAVE_DECL_STRNCASECMP 1 #define HAVE_WORKING_CALLOC 1 #define HAVE_WORKING_ISFINITE 1 #define HAVE_WORKING_LOG1P 1 #define HAVE_WORKING_FTELL 1 #define HAVE_WORKING_SIGACTION 1 #define HAVE_WORKING_64BIT_MKTIME 1 #define HAVE_CABS 1 #define HAVE_CARG 1 #define HAVE_CEXP 1 #define HAVE_CLOG 1 #define HAVE_CSQRT 1 #define HAVE_CPOW 1 #define HAVE_CCOS 1 #define HAVE_CSIN 1 #define HAVE_CTAN 1 #define HAVE_CACOS 1 #define HAVE_CASIN 1 #define HAVE_CATAN 1 #define HAVE_CCOSH 1 #define HAVE_CSINH 1 #define HAVE_CTANH 1 #define HAVE_TM_ZONE 1 #define HAVE_TM_GMTOFF 1 #define HAVE_ICONV_H 1 #define HAVE_ICONV 1 #define HAVE_ICONV 1 #define ICONV_CONST #define HAVE_WCHAR_H 1 #define HAVE_WCTYPE_H 1 #define HAVE_MBRTOWC 1 #define HAVE_WCRTOMB 1 #define HAVE_WCSCOLL 1 #define HAVE_WCSFTIME 1 #define HAVE_WCSTOD 1 #define HAVE_MBSTOWCS 1 #define HAVE_WCSTOMBS 1 #define HAVE_WCTRANS 1 #define HAVE_ISWBLANK 1 #define HAVE_WCTYPE 1 #define HAVE_ISWCTYPE 1 #define HAVE_WCTRANS_T 1 #define HAVE_MBSTATE_T 1 #define HAVE_X11 1 #define HAVE_KEYSYM 1 #define HAVE_CAIRO_PDF 1 #define HAVE_CAIRO_PS 1 #define HAVE_CAIRO_SVG 1 #define HAVE_BSD_NETWORKING 1 #define HAVE_SOCKETS 1 #define HAVE_INTERNET 1 #define SUPPORT_LIBXML 1 #define HAVE_JPEG 1 #define HAVE_PNG 1 #define HAVE_POSIX_LEAPSECONDS 1 #define HAVE_SYS_TIME_H 1 #define HAVE_STDLIB_H 1 #define HAVE_UNISTD_H 1 #define HAVE_SYS_PARAM_H 1 #define HAVE_STRUCT_STAT_ST_ATIM_TV_NSEC 1 #define TYPEOF_STRUCT_STAT_ST_ATIM_IS_STRUCT_TIMESPEC 1 #define HAVE_SETITIMER 1 #define R_PROFILING 1 #define HAVE_FSEEKO 1 #define NVALGRIND 1 #define VALGRIND_LEVEL 0 #define HAVE_LIBC_STACK_END 1 #define R_PRINTCMD "lpr" #define SUPPORT_OPENMP 1 #define HAVE_VISIBILITY 1 #define HAVE_STDINT_H_WITH_UINTMAX 1 #define HAVE_GETPAGESIZE 1 #define HAVE_MMAP 1 #define INTDIV0_RAISES_SIGFPE 1 #define HAVE_INTTYPES_H_WITH_UINTMAX 1 #define HAVE_UNSIGNED_LONG_LONG_INT 1 #define HAVE_UNSIGNED_LONG_LONG 1 #define HAVE_UINTMAX_T 1 #define HAVE_INTTYPES_H 1 #define HAVE_BUILTIN_EXPECT 1 #define HAVE_ARGZ_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_LIMITS_H 1 #define HAVE_UNISTD_H 1 #define HAVE_SYS_PARAM_H 1 #define HAVE_GETCWD 1 #define HAVE_GETEGID 1 #define HAVE_GETEUID 1 #define HAVE_GETGID 1 #define HAVE_GETUID 1 #define HAVE_MEMPCPY 1 #define HAVE_MUNMAP 1 #define HAVE_STPCPY 1 #define HAVE_STRCASECMP 1 #define HAVE_STRDUP 1 #define HAVE_STRTOUL 1 #define HAVE_TSEARCH 1 #define HAVE_ARGZ_COUNT 1 #define HAVE_ARGZ_STRINGIFY 1 #define HAVE_ARGZ_NEXT 1 #define HAVE___FSETLOCKING 1 #define HAVE_DECL_FEOF_UNLOCKED 1 #define HAVE_DECL_FGETS_UNLOCKED 1 #define HAVE_ICONV 1 #define ICONV_CONST #define HAVE_NL_LOCALE_NAME 1 #define HAVE_LONG_LONG_INT 1 #define HAVE_WCHAR_T 1 #define HAVE_WINT_T 1 #define HAVE_INTMAX_T 1 #define HAVE_POSIX_PRINTF 1 #define HAVE_STDINT_H 1 #define HAVE_STDINT_H 1 #define HAVE_STDDEF_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_ASPRINTF 1 #define HAVE_FWPRINTF 1 #define HAVE_PUTENV 1 #define HAVE_SETENV 1 #define HAVE_SETLOCALE 1 #define HAVE_SNPRINTF 1 #define HAVE_WCSLEN 1 #define HAVE_DECL__SNPRINTF 0 #define HAVE_DECL__SNWPRINTF 0 #define HAVE_DECL_GETC_UNLOCKED 1 #define HAVE_LANGINFO_CODESET 1 #define HAVE_LC_MESSAGES 1 #define ENABLE_NLS 1 #define HAVE_GETTEXT 1 #define HAVE_DCGETTEXT 1 configure: exit 0 ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by R config.status 3.1.1, which was generated by GNU Autoconf 2.69. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status src/unix/Makefile on mus config.status:1889: creating src/unix/Makefile ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by R config.status 3.1.1, which was generated by GNU Autoconf 2.69. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status src/main/Makefile on mus config.status:1889: creating src/main/Makefile