# File src/library/base/R/all.equal.R # Part of the R package, http://www.R-project.org # # Copyright (C) 1995-2014 The R Core Team # # This program is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 2 of the License, or # (at your option) any later version. # # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # A copy of the GNU General Public License is available at # http://www.r-project.org/Licenses/ all.equal <- function(target, current, ...) UseMethod("all.equal") all.equal.default <- function(target, current, ...) { ## Really a dispatcher given mode() of args : ## use data.class as unlike class it does not give "integer" if(is.language(target) || is.function(target) || is.environment(target)) return(all.equal.language(target, current, ...)) if(is.recursive(target)) return(all.equal.list(target, current, ...)) msg <- switch (mode(target), integer = , complex = , numeric = all.equal.numeric(target, current, ...), character = all.equal.character(target, current, ...), logical = , raw = all.equal.raw(target, current, ...), ## assumes that slots are implemented as attributes : S4 = attr.all.equal(target, current, ...), if(data.class(target) != data.class(current)) { gettextf("target is %s, current is %s", data.class(target), data.class(current)) } else NULL) if(is.null(msg)) TRUE else msg } all.equal.numeric <- function(target, current, tolerance = .Machine$double.eps ^ .5, scale = NULL, ..., check.attributes = TRUE) { if (!is.numeric(tolerance)) stop("'tolerance' should be numeric") if (!is.numeric(scale) && !is.null(scale)) stop("'scale' should be numeric or NULL") if (!is.logical(check.attributes)) stop(gettextf("'%s' must be logical", "check.attributes"), domain = NA) msg <- if(check.attributes) attr.all.equal(target, current, tolerance = tolerance, scale = scale, ...) if(data.class(target) != data.class(current)) { msg <- c(msg, paste0("target is ", data.class(target), ", current is ", data.class(current))) return(msg) } lt <- length(target) lc <- length(current) cplx <- is.complex(target) # and so current must be too. if(lt != lc) { ## *replace* the 'Lengths' msg[] from attr.all.equal(): if(!is.null(msg)) msg <- msg[- grep("\\bLengths\\b", msg)] msg <- c(msg, paste0(if(cplx) "Complex" else "Numeric", ": lengths (", lt, ", ", lc, ") differ")) return(msg) } ## remove atttributes (remember these are both numeric or complex vectors) ## one place this is needed is to unclass Surv objects in the rpart test suite. target <- as.vector(target) current <- as.vector(current) out <- is.na(target) if(any(out != is.na(current))) { msg <- c(msg, paste("'is.NA' value mismatch:", sum(is.na(current)), "in current", sum(out), "in target")) return(msg) } out <- out | target == current if(all(out)) { if (is.null(msg)) return(TRUE) else return(msg) } target <- target[!out] current <- current[!out] if(is.integer(target) && is.integer(current)) target <- as.double(target) xy <- mean((if(cplx) Mod else abs)(target - current)) what <- if(is.null(scale)) { xn <- mean(abs(target)) if(is.finite(xn) && xn > tolerance) { xy <- xy/xn "relative" } else "absolute" } else { xy <- xy/scale if(scale == 1) "absolute" else "scaled" } if (cplx) what <- paste(what, "Mod") # PR#10575 if(is.na(xy) || xy > tolerance) msg <- c(msg, paste("Mean", what, "difference:", format(xy))) if(is.null(msg)) TRUE else msg } all.equal.character <- function(target, current, ..., check.attributes = TRUE) { if (!is.logical(check.attributes)) stop(gettextf("'%s' must be logical", "check.attributes"), domain = NA) msg <- if(check.attributes) attr.all.equal(target, current, ...) if(data.class(target) != data.class(current)) { msg <- c(msg, paste0("target is ", data.class(target), ", current is ", data.class(current))) return(msg) } lt <- length(target) lc <- length(current) if(lt != lc) { if(!is.null(msg)) msg <- msg[- grep("\\bLengths\\b", msg)] msg <- c(msg, paste0("Lengths (", lt, ", ", lc, ") differ (string compare on first ", ll <- min(lt, lc), ")")) ll <- seq_len(ll) target <- target[ll] current <- current[ll] } nas <- is.na(target); nasc <- is.na(current) if (any(nas != nasc)) { msg <- c(msg, paste("'is.NA' value mismatch:", sum(nasc), "in current", sum(nas), "in target")) return(msg) } ne <- !nas & (target != current) if(!any(ne) && is.null(msg)) TRUE else if(sum(ne) == 1L) c(msg, paste("1 string mismatch")) else if(sum(ne) > 1L) c(msg, paste(sum(ne), "string mismatches")) else msg } ## visible, so need to test both args all.equal.factor <- function(target, current, ..., check.attributes = TRUE) { if(!inherits(target, "factor")) return("'target' is not a factor") if(!inherits(current, "factor")) return("'current' is not a factor") msg <- if(check.attributes) attr.all.equal(target, current, ...) n <- all.equal(as.character(target), as.character(current), check.attributes = check.attributes, ...) if(is.character(n)) msg <- c(msg, n) if(is.null(msg)) TRUE else msg } all.equal.formula <- function(target, current, ...) { ## NB: this assumes the default method for class formula, not ## the misquided one in package Formula if(length(target) != length(current)) return(paste("target, current differ in having response: ", length(target) == 3L, ", ", length(current) == 3L, sep="")) ## ## This takes same-length formulas as all equal if they deparse ## identically. As of 2010-02-24, deparsing strips attributes; if ## this is changed, the all equal behavior will change unless the ## test is changed. ## if(!identical(deparse(target), deparse(current))) "formulas differ in contents" else TRUE } all.equal.language <- function(target, current, ...) { mt <- mode(target) mc <- mode(current) if(mt == "expression" && mc == "expression") return(all.equal.list(target, current, ...)) ttxt <- paste(deparse(target), collapse = "\n") ctxt <- paste(deparse(current), collapse = "\n") msg <- c(if(mt != mc) paste0("Modes of target, current: ", mt, ", ", mc), if(ttxt != ctxt) { if(pmatch(ttxt, ctxt, 0L)) "target is a subset of current" else if(pmatch(ctxt, ttxt, 0L)) "current is a subset of target" else "target, current do not match when deparsed" }) if(is.null(msg)) TRUE else msg } ## use.names is new in 3.1.0: avoid partial/positional matching all.equal.list <- function(target, current, ..., check.attributes = TRUE, use.names = TRUE) { if (!is.logical(check.attributes)) stop(gettextf("'%s' must be logical", "check.attributes"), domain = NA) if (!is.logical(use.names)) stop(gettextf("'%s' must be logical", "use.names"), domain = NA) msg <- if(check.attributes) attr.all.equal(target, current, ...) ## Unclass to ensure we get the low-level components target <- unclass(target) # "list" current <- unclass(current)# ?? ## Comparing the data.class() is not ok, as a list matrix is 'matrix' not 'list' if(!is.list(target) && !is.vector(target)) return(c(msg, "target is not list-like")) if(!is.list(current) && !is.vector(current)) return(c(msg, "current is not list-like")) if((n <- length(target)) != length(current)) { if(!is.null(msg)) msg <- msg[- grep("\\bLengths\\b", msg)] n <- min(n, length(current)) msg <- c(msg, paste("Length mismatch: comparison on first", n, "components")) } iseq <- seq_len(n) if(use.names) use.names <- (length(nt <- names(target )[iseq]) == n && length(nc <- names(current)[iseq]) == n) for(i in iseq) { mi <- all.equal(target[[i]], current[[i]], check.attributes=check.attributes, use.names=use.names, ...) if(is.character(mi)) msg <- c(msg, paste0("Component ", if(use.names && nt[i] == nc[i]) dQuote(nt[i]) else i, ": ", mi)) } if(is.null(msg)) TRUE else msg } ## also used for logical all.equal.raw <- function(target, current, ..., check.attributes = TRUE) { if (!is.logical(check.attributes)) stop(gettextf("'%s' must be logical", "check.attributes"), domain = NA) msg <- if(check.attributes) attr.all.equal(target, current, ...) if(data.class(target) != data.class(current)) { msg <- c(msg, paste0("target is ", data.class(target), ", current is ", data.class(current))) return(msg) } lt <- length(target) lc <- length(current) if(lt != lc) { if(!is.null(msg)) msg <- msg[- grep("\\bLengths\\b", msg)] msg <- c(msg, paste0("Lengths (", lt, ", ", lc, ") differ (comparison on first ", ll <- min(lt, lc), " components)")) ll <- seq_len(ll) target <- target[ll] current <- current[ll] } # raws do not have NAs, but logicals do nas <- is.na(target); nasc <- is.na(current) if (any(nas != nasc)) { msg <- c(msg, paste("'is.NA' value mismatch:", sum(nasc), "in current", sum(nas), "in target")) return(msg) } ne <- !nas & (target != current) if(!any(ne) && is.null(msg)) TRUE else if(sum(ne) == 1L) c(msg, paste("1 element mismatch")) else if(sum(ne) > 1L) c(msg, paste(sum(ne), "element mismatches")) else msg } ## attributes are a pairlist, so never 'long' attr.all.equal <- function(target, current, ..., check.attributes = TRUE, check.names = TRUE) { ##--- "all.equal(.)" for attributes --- ##--- Auxiliary in all.equal(.) methods --- return NULL or character() if (!is.logical(check.attributes)) stop(gettextf("'%s' must be logical", "check.attributes"), domain = NA) if (!is.logical(check.names)) stop(gettextf("'%s' must be logical", "check.names"), domain = NA) msg <- NULL if(mode(target) != mode(current)) msg <- paste0("Modes: ", mode(target), ", ", mode(current)) if(length(target) != length(current)) msg <- c(msg, paste0("Lengths: ", length(target), ", ", length(current))) ax <- attributes(target) ay <- attributes(current) if(check.names) { nx <- names(target) ny <- names(current) if((lx <- length(nx)) | (ly <- length(ny))) { ## names() treated now; hence NOT with attributes() ax$names <- ay$names <- NULL if(lx && ly) { if(is.character(m <- all.equal.character(nx, ny, check.attributes = check.attributes))) msg <- c(msg, paste("Names:", m)) } else if(lx) msg <- c(msg, "names for target but not for current") else msg <- c(msg, "names for current but not for target") } } else { ax[["names"]] <- NULL ay[["names"]] <- NULL } if(check.attributes && (length(ax) || length(ay))) {# some (more) attributes ## order by names before comparison: nx <- names(ax) ny <- names(ay) if(length(nx)) ax <- ax[order(nx)] if(length(ny)) ay <- ay[order(ny)] tt <- all.equal(ax, ay, ..., check.attributes = check.attributes) if(is.character(tt)) msg <- c(msg, paste("Attributes: <", tt, ">")) } msg # NULL or character } ## formerly in datetime.R ## force absolute comparisons all.equal.POSIXt <- function(target, current, ..., tolerance = 1e-3, scale) { target <- as.POSIXct(target); current <- as.POSIXct(current) check_tzones(target, current) attr(target, "tzone") <- attr(current, "tzone") <- NULL all.equal.numeric(target, current, ..., tolerance = tolerance, scale = 1) }