R version 3.1.1 RC (2014-07-04 r66081) -- "Sock it to Me" Copyright (C) 2014 The R Foundation for Statistical Computing Platform: x86_64-unknown-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(parallel) > > library(boot) > cd4.rg <- function(data, mle) MASS::mvrnorm(nrow(data), mle$m, mle$v) > cd4.mle <- list(m = colMeans(cd4), v = var(cd4)) > mc <- getOption("mc.cores", 2) > run1 <- function(...) boot(cd4, corr, R = 500, sim = "parametric", + ran.gen = cd4.rg, mle = cd4.mle) > ## To make this reproducible: > set.seed(123, "L'Ecuyer"); mc.reset.stream() > res <- mclapply(seq_len(mc), run1) > cd4.boot <- do.call(c, res) > boot.ci(cd4.boot, type = c("norm", "basic", "perc"), + conf = 0.9, h = atanh, hinv = tanh) BOOTSTRAP CONFIDENCE INTERVAL CALCULATIONS Based on 1000 bootstrap replicates CALL : boot.ci(boot.out = cd4.boot, conf = 0.9, type = c("norm", "basic", "perc"), h = atanh, hinv = tanh) Intervals : Level Normal Basic Percentile 90% ( 0.4575, 0.8547 ) ( 0.4703, 0.8575 ) ( 0.4964, 0.8663 ) Calculations on Transformed Scale; Intervals on Original Scale > > proc.time() user system elapsed 0.320 0.032 0.351