/* * R : A Computer Language for Statistical Data Analysis * Copyright (C) 1995, 1996 Robert Gentleman and Ross Ihaka * Copyright (C) 2002-3 The R Foundation * Copyright (C) 1999-2013 The R Core Team. * * This program is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2, or (at your option) * any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program; if not, a copy is available at * http://www.r-project.org/Licenses/ */ /* This module contains support for S-style generic */ /* functions and "class" support. Gag, barf ... */ #ifdef HAVE_CONFIG_H #include #endif #define R_USE_SIGNALS 1 #include #include #include /* for Calloc, Realloc and for S4 object bit */ static SEXP GetObject(RCNTXT *cptr) { SEXP s, sysp, b, formals, funcall, tag; sysp = R_GlobalContext->sysparent; PROTECT(funcall = R_syscall(0, cptr)); if ( TYPEOF(CAR(funcall)) == SYMSXP ) PROTECT(b = findFun(CAR(funcall), sysp)); else PROTECT(b = eval(CAR(funcall), sysp)); /**** use R_sysfunction here instead */ if (TYPEOF(b) != CLOSXP) error(_("generic 'function' is not a function")); formals = FORMALS(b); tag = TAG(formals); if (tag != R_NilValue && tag != R_DotsSymbol) { s = NULL; /** exact matches **/ for (b = cptr->promargs ; b != R_NilValue ; b = CDR(b)) if (TAG(b) != R_NilValue && pmatch(tag, TAG(b), 1)) { if (s != NULL) error(_("formal argument \"%s\" matched by multiple actual arguments"), tag); else s = CAR(b); } if (s == NULL) /** partial matches **/ for (b = cptr->promargs ; b != R_NilValue ; b = CDR(b)) if (TAG(b) != R_NilValue && pmatch(tag, TAG(b), 0)) { if ( s != NULL) error(_("formal argument \"%s\" matched by multiple actual arguments"), tag); else s = CAR(b); } if (s == NULL) /** first untagged argument **/ for (b = cptr->promargs ; b != R_NilValue ; b = CDR(b)) if (TAG(b) == R_NilValue ) { s = CAR(b); break; } if (s == NULL) s = CAR(cptr->promargs); /* error("failed to match argument for dispatch"); */ } else s = CAR(cptr->promargs); UNPROTECT(2); if (TYPEOF(s) == PROMSXP) { if (PRVALUE(s) == R_UnboundValue) s = eval(s, R_BaseEnv); else s = PRVALUE(s); } return(s); } static SEXP applyMethod(SEXP call, SEXP op, SEXP args, SEXP rho, SEXP newrho) { SEXP ans; if (TYPEOF(op) == SPECIALSXP) { int save = R_PPStackTop, flag = PRIMPRINT(op); const void *vmax = vmaxget(); R_Visible = flag != 1; ans = PRIMFUN(op) (call, op, args, rho); if (flag < 2) R_Visible = flag != 1; check_stack_balance(op, save); vmaxset(vmax); } /* In other places we add a context to builtins when profiling, but we have not bothered here (as there seem to be no primitives used as methods, and this would have to be a primitive to be found). */ else if (TYPEOF(op) == BUILTINSXP) { int save = R_PPStackTop, flag = PRIMPRINT(op); const void *vmax = vmaxget(); PROTECT(args = evalList(args, rho, call, 0)); R_Visible = flag != 1; ans = PRIMFUN(op) (call, op, args, rho); if (flag < 2) R_Visible = flag != 1; UNPROTECT(1); check_stack_balance(op, save); vmaxset(vmax); } else if (TYPEOF(op) == CLOSXP) { ans = applyClosure(call, op, args, rho, newrho); } else ans = R_NilValue; /* for -Wall */ return ans; } /* "newintoold" - a destructive matching of arguments; */ /* newargs comes first; any element of oldargs with */ /* a name that matches a named newarg is deleted; the */ /* two resulting lists are appended and returned. */ /* S claims to do this (white book) but doesn't seem to. */ static SEXP newintoold(SEXP _new, SEXP old) { if (_new == R_NilValue) return R_NilValue; SETCDR(_new, newintoold(CDR(_new),old)); while (old != R_NilValue) { if (TAG(old) != R_NilValue && TAG(old) == TAG(_new)) { SETCAR(old, CAR(_new)); return CDR(_new); } old = CDR(old); } return _new; } static SEXP matchmethargs(SEXP oldargs, SEXP newargs) { newargs = newintoold(newargs, oldargs); return listAppend(oldargs, newargs); } /* R_MethodsNamespace is initialized to R_GlobalEnv when R is initialized. If it set to the methods namespace when the latter is loaded, and back to R_GlobalEnv when it is unloaded. */ #ifdef S3_for_S4_warn /* not currently used */ static SEXP s_check_S3_for_S4 = 0; void R_warn_S3_for_S4(SEXP method) { SEXP call; if(!s_check_S3_for_S4) s_check_S3_for_S4 = install(".checkS3forS4"); PROTECT(call = lang2(s_check_S3_for_S4, method)); eval(call, R_MethodsNamespace); UNPROTECT(1); } #endif /* usemethod - calling functions need to evaluate the object * (== 2nd argument). They also need to ensure that the * argument list is set up in the correct manner. * * 1. find the context for the calling function (i.e. the generic) * this gives us the unevaluated arguments for the original call * * 2. create an environment for evaluating the method and insert * a handful of variables (.Generic, .Class and .Method) into * that environment. Also copy any variables in the env of the * generic that are not formal (or actual) arguments. * * 3. fix up the argument list; it should be the arguments to the * generic matched to the formals of the method to be invoked */ attribute_hidden SEXP R_LookupMethod(SEXP method, SEXP rho, SEXP callrho, SEXP defrho) { SEXP val; if (TYPEOF(callrho) == NILSXP) { error(_("use of NULL environment is defunct")); callrho = R_BaseEnv; } else if (TYPEOF(callrho) != ENVSXP) error(_("bad generic call environment")); if (TYPEOF(defrho) == NILSXP) { error(_("use of NULL environment is defunct")); defrho = R_BaseEnv; } else if (TYPEOF(defrho) != ENVSXP) error(_("bad generic definition environment")); if (defrho == R_BaseEnv) defrho = R_BaseNamespace; /* This evaluates promises */ val = findVar1(method, callrho, FUNSXP, TRUE); if (isFunction(val)) return val; else { /* We assume here that no one registered a non-function */ SEXP table = findVarInFrame3(defrho, install(".__S3MethodsTable__."), TRUE); if (TYPEOF(table) == PROMSXP) table = eval(table, R_BaseEnv); if (TYPEOF(table) == ENVSXP) { val = findVarInFrame3(table, method, TRUE); if (TYPEOF(val) == PROMSXP) val = eval(val, rho); if (val != R_UnboundValue) return val; } return R_UnboundValue; } } #ifdef UNUSED static int match_to_obj(SEXP arg, SEXP obj) { return (arg == obj) || (TYPEOF(arg) == PROMSXP && PRVALUE(arg) == obj); } #endif /* look up the class name in the methods package table of S3 classes which should be explicitly converted when an S3 method is applied to an object from an S4 subclass. */ int isBasicClass(const char *ss) { static SEXP s_S3table = 0; if(!s_S3table) { s_S3table = findVarInFrame3(R_MethodsNamespace, install(".S3MethodsClasses"), TRUE); if(s_S3table == R_UnboundValue) error(_("no '.S3MethodsClass' table, cannot use S4 objects with S3 methods ('methods' package not attached?)")); if (TYPEOF(s_S3table) == PROMSXP) /* findVar... ignores lazy data */ s_S3table = eval(s_S3table, R_MethodsNamespace); } if(s_S3table == R_UnboundValue) return FALSE; /* too screwed up to do conversions */ return findVarInFrame3(s_S3table, install(ss), FALSE) != R_UnboundValue; } attribute_hidden int usemethod(const char *generic, SEXP obj, SEXP call, SEXP args, SEXP rho, SEXP callrho, SEXP defrho, SEXP *ans) { SEXP klass, method, sxp, t, s, matchedarg, sort_list; SEXP op, formals, newrho, newcall; char buf[512]; int i, j, nclass, matched, /* S4toS3, */ nprotect; RCNTXT *cptr; /* Get the context which UseMethod was called from. */ cptr = R_GlobalContext; if ( !(cptr->callflag & CTXT_FUNCTION) || cptr->cloenv != rho) error(_("'UseMethod' used in an inappropriate fashion")); /* Create a new environment without any */ /* of the formals to the generic in it. */ PROTECT(newrho = allocSExp(ENVSXP)); op = CAR(cptr->call); switch (TYPEOF(op)) { case SYMSXP: PROTECT(op = findFun(op, cptr->sysparent)); break; case LANGSXP: PROTECT(op = eval(op, cptr->sysparent)); break; case CLOSXP: case BUILTINSXP: case SPECIALSXP: PROTECT(op); break; default: error(_("invalid generic function in 'usemethod'")); } nprotect = 5; if (TYPEOF(op) == CLOSXP) { formals = FORMALS(op); for (s = FRAME(cptr->cloenv); s != R_NilValue; s = CDR(s)) { matched = 0; for (t = formals; t != R_NilValue; t = CDR(t)) if (TAG(t) == TAG(s)) { matched = 1; } if (!matched) defineVar(TAG(s), CAR(s), newrho); } } PROTECT(matchedarg = cptr->promargs); PROTECT(newcall = duplicate(cptr->call)); PROTECT(klass = R_data_class2(obj)); sort_list = install("sort.list"); nclass = length(klass); for (i = 0; i < nclass; i++) { const void *vmax = vmaxget(); const char *ss = translateChar(STRING_ELT(klass, i)); if(strlen(generic) + strlen(ss) + 2 > 512) error(_("class name too long in '%s'"), generic); snprintf(buf, 512, "%s.%s", generic, ss); method = install(buf); vmaxset(vmax); sxp = R_LookupMethod(method, rho, callrho, defrho); if (isFunction(sxp)) { if(method == sort_list && CLOENV(sxp) == R_BaseNamespace) continue; /* kludge because sort.list is not a method */ if( RDEBUG(op) || RSTEP(op) ) SET_RSTEP(sxp, 1); defineVar(R_dot_Generic, mkString(generic), newrho); if (i > 0) { int ii; PROTECT(t = allocVector(STRSXP, nclass - i)); for(j = 0, ii = i; j < length(t); j++, ii++) SET_STRING_ELT(t, j, STRING_ELT(klass, ii)); setAttrib(t, install("previous"), klass); defineVar(R_dot_Class, t, newrho); UNPROTECT(1); } else defineVar(R_dot_Class, klass, newrho); PROTECT(t = mkString(buf)); defineVar(R_dot_Method, t, newrho); UNPROTECT(1); defineVar(R_dot_GenericCallEnv, callrho, newrho); defineVar(R_dot_GenericDefEnv, defrho, newrho); t = newcall; SETCAR(t, method); R_GlobalContext->callflag = CTXT_GENERIC; *ans = applyMethod(t, sxp, matchedarg, rho, newrho); R_GlobalContext->callflag = CTXT_RETURN; UNPROTECT(nprotect); return 1; } } if(strlen(generic) + strlen("default") + 2 > 512) error(_("class name too long in '%s'"), generic); snprintf(buf, 512, "%s.default", generic); method = install(buf); sxp = R_LookupMethod(method, rho, callrho, defrho); if (isFunction(sxp)) { if( RDEBUG(op) || RSTEP(op) ) SET_RSTEP(sxp, 1); defineVar(R_dot_Generic, mkString(generic), newrho); defineVar(R_dot_Class, R_NilValue, newrho); PROTECT(t = mkString(buf)); defineVar(R_dot_Method, t, newrho); UNPROTECT(1); defineVar(R_dot_GenericCallEnv, callrho, newrho); defineVar(R_dot_GenericDefEnv, defrho, newrho); t = newcall; SETCAR(t, method); R_GlobalContext->callflag = CTXT_GENERIC; *ans = applyMethod(t, sxp, matchedarg, rho, newrho); R_GlobalContext->callflag = CTXT_RETURN; UNPROTECT(5); return 1; } UNPROTECT(5); cptr->callflag = CTXT_RETURN; return 0; } /* Note: "do_usemethod" is not the only entry point to "usemethod". Things like [ and [[ call usemethod directly, hence do_usemethod should just be an interface to usemethod. */ /* This is a primitive SPECIALSXP */ SEXP attribute_hidden do_usemethod(SEXP call, SEXP op, SEXP args, SEXP env) { SEXP ans, generic = R_NilValue /* -Wall */, obj, val; SEXP callenv, defenv; SEXP ap, argList; RCNTXT *cptr; PROTECT(ap = list2(R_NilValue, R_NilValue)); SET_TAG(ap, install("generic")); SET_TAG(CDR(ap), install("object")); PROTECT(argList = matchArgs(ap, args, call)); if (CAR(argList) == R_MissingArg) errorcall(call, _("there must be a 'generic' argument")); else PROTECT(generic = eval(CAR(argList), env)); if(!isString(generic) || length(generic) != 1) errorcall(call, _("'generic' argument must be a character string")); /* get environments needed for dispatching. callenv = environment from which the generic was called defenv = environment where the generic was defined */ cptr = R_GlobalContext; if ( !(cptr->callflag & CTXT_FUNCTION) || cptr->cloenv != env) errorcall(call, _("'UseMethod' used in an inappropriate fashion")); callenv = cptr->sysparent; /* We need to find the generic to find out where it is defined. This is set up to avoid getting caught by things like mycoef <- function(x) { mycoef <- function(x) stop("not this one") UseMethod("mycoef") } The generic need not be a closure (Henrik Bengtsson writes UseMethod("$"), although only functions are documented.) */ val = findVar1(installTrChar(STRING_ELT(generic, 0)), ENCLOS(env), FUNSXP, TRUE); /* That has evaluated promises */ if(TYPEOF(val) == CLOSXP) defenv = CLOENV(val); else defenv = R_BaseNamespace; if (CADR(argList) != R_MissingArg) PROTECT(obj = eval(CADR(argList), env)); else { cptr = R_GlobalContext; while (cptr != NULL) { if ( (cptr->callflag & CTXT_FUNCTION) && cptr->cloenv == env) break; cptr = cptr->nextcontext; } if (cptr == NULL) errorcall(call, _("'UseMethod' called from outside a function")); PROTECT(obj = GetObject(cptr)); } if (TYPEOF(generic) != STRSXP || LENGTH(generic) < 1 || CHAR(STRING_ELT(generic, 0))[0] == '\0') errorcall(call, _("first argument must be a generic name")); if (usemethod(translateChar(STRING_ELT(generic, 0)), obj, call, CDR(args), env, callenv, defenv, &ans) == 1) { UNPROTECT(3); /* obj, ap, argList */ PROTECT(ans); findcontext(CTXT_RETURN, env, ans); /* does not return */ } else { SEXP klass; int nclass; char cl[1000]; PROTECT(klass = R_data_class2(obj)); nclass = length(klass); if (nclass == 1) strcpy(cl, translateChar(STRING_ELT(klass, 0))); else { int i; strcpy(cl, "c('"); for (i = 0; i < nclass; i++) { if (i > 0) strcat(cl, "', '"); strcat(cl, translateChar(STRING_ELT(klass, i))); } strcat(cl, "')"); } errorcall(call, _("no applicable method for '%s' applied to an object of class \"%s\""), translateChar(STRING_ELT(generic, 0)), cl); } /* Not reached */ return R_NilValue; } /* fixcall: fixes up the call when arguments to the function may have changed; for now we only worry about tagged args, appending them if they are not already there */ static SEXP fixcall(SEXP call, SEXP args) { SEXP s, t; int found; for(t = args; t != R_NilValue; t = CDR(t)) { if(TAG(t) != R_NilValue) { found = 0; for(s = call; CDR(s) != R_NilValue; s = CDR(s)) if(TAG(CDR(s)) == TAG(t)) found = 1; if( !found ) { SETCDR(s, allocList(1)); SET_TAG(CDR(s), TAG(t)); SETCAR(CDR(s), duplicate(CAR(t))); } } } return call; } /* If NextMethod has any arguments the first must be the generic */ /* the second the object and any remaining are matched with the */ /* formals of the chosen method. */ #define ARGUSED(x) LEVELS(x) /* This is a special .Internal */ SEXP attribute_hidden do_nextmethod(SEXP call, SEXP op, SEXP args, SEXP env) { char buf[512], b[512], bb[512], tbuf[10]; const char *sb, *sg, *sk; SEXP ans, s, t, klass, method, matchedarg, generic, nextfun; SEXP sysp, m, formals, actuals, tmp, newcall; SEXP a, group, basename; SEXP callenv, defenv; RCNTXT *cptr; int i, j; cptr = R_GlobalContext; cptr->callflag = CTXT_GENERIC; /* get the env NextMethod was called from */ sysp = R_GlobalContext->sysparent; while (cptr != NULL) { if (cptr->callflag & CTXT_FUNCTION && cptr->cloenv == sysp) break; cptr = cptr->nextcontext; } if (cptr == NULL) error(_("'NextMethod' called from outside a function")); PROTECT(newcall = duplicate(cptr->call)); /* eg get("print.ts")(1) */ if (TYPEOF(CAR(cptr->call)) == LANGSXP) error(_("'NextMethod' called from an anonymous function")); /* Find dispatching environments. Promises shouldn't occur, but check to be on the safe side. If the variables are not in the environment (the method was called outside a method dispatch) then chose reasonable defaults. */ callenv = findVarInFrame3(R_GlobalContext->sysparent, R_dot_GenericCallEnv, TRUE); if (TYPEOF(callenv) == PROMSXP) callenv = eval(callenv, R_BaseEnv); else if (callenv == R_UnboundValue) callenv = env; defenv = findVarInFrame3(R_GlobalContext->sysparent, R_dot_GenericDefEnv, TRUE); if (TYPEOF(defenv) == PROMSXP) defenv = eval(defenv, R_BaseEnv); else if (defenv == R_UnboundValue) defenv = R_GlobalEnv; /* set up the arglist */ if (TYPEOF(CAR(cptr->call)) == CLOSXP) // e.g., in do.call(function(x) NextMethod('foo'),list()) s = CAR(cptr->call); else s = R_LookupMethod(CAR(cptr->call), env, callenv, defenv); if (TYPEOF(s) == SYMSXP && s == R_UnboundValue) error(_("no calling generic was found: was a method called directly?")); if (TYPEOF(s) != CLOSXP){ /* R_LookupMethod looked for a function */ errorcall(R_NilValue, _("'function' is not a function, but of type %d"), TYPEOF(s)); } /* get formals and actuals; attach the names of the formals to the actuals, expanding any ... that occurs */ formals = FORMALS(s); PROTECT(actuals = matchArgs(formals, cptr->promargs, call)); i = 0; for(s = formals, t = actuals; s != R_NilValue; s = CDR(s), t = CDR(t)) { SET_TAG(t, TAG(s)); if(TAG(t) == R_DotsSymbol) i = length(CAR(t)); } if(i) { /* we need to expand out the dots */ PROTECT(t = allocList(i+length(actuals)-1)); for(s = actuals, m = t; s != R_NilValue; s = CDR(s)) { if(TYPEOF(CAR(s)) == DOTSXP) { for(i = 1, a = CAR(s); a != R_NilValue; a = CDR(a), i++, m = CDR(m)) { snprintf(tbuf, 10, "..%d", i); SET_TAG(m, mkSYMSXP(mkChar(tbuf), R_UnboundValue)); SETCAR(m, CAR(a)); } } else { SET_TAG(m, TAG(s)); SETCAR(m, CAR(s)); m = CDR(m); } } UNPROTECT(1); actuals = t; } PROTECT(actuals); /* we can't duplicate because it would force the promises */ /* so we do our own duplication of the promargs */ PROTECT(matchedarg = allocList(length(cptr->promargs))); for (t = matchedarg, s = cptr->promargs; t != R_NilValue; s = CDR(s), t = CDR(t)) { SETCAR(t, CAR(s)); SET_TAG(t, TAG(s)); } for (t = matchedarg; t != R_NilValue; t = CDR(t)) { for (m = actuals; m != R_NilValue; m = CDR(m)) if (CAR(m) == CAR(t)) { if (CAR(m) == R_MissingArg) { tmp = findVarInFrame3(cptr->cloenv, TAG(m), TRUE); if (tmp == R_MissingArg) break; } SETCAR(t, mkPROMISE(TAG(m), cptr->cloenv)); break; } } /* Now see if there were any other arguments passed in Currently we seem to only allow named args to change or to be added, this is at variance with p. 470 of the White Book */ s = CADDR(args); /* this is ... and we need to see if it's bound */ if (s == R_DotsSymbol) { t = findVarInFrame3(env, s, TRUE); if (t != R_NilValue && t != R_MissingArg) { SET_TYPEOF(t, LISTSXP); /* a safe mutation */ s = matchmethargs(matchedarg, t); UNPROTECT(1); PROTECT(matchedarg = s); newcall = fixcall(newcall, matchedarg); } } else error(_("wrong argument ...")); /* .Class is used to determine the next method; if it doesn't exist the first argument to the current method is used the second argument to NextMethod is another option but isn't currently used). */ klass = findVarInFrame3(R_GlobalContext->sysparent, R_dot_Class, TRUE); if (klass == R_UnboundValue) { s = GetObject(cptr); if (!isObject(s)) error(_("object not specified")); klass = getAttrib(s, R_ClassSymbol); } /* the generic comes from either the sysparent or it's named */ generic = findVarInFrame3(R_GlobalContext->sysparent, R_dot_Generic, TRUE); if (generic == R_UnboundValue) generic = eval(CAR(args), env); if( generic == R_NilValue ) error(_("generic function not specified")); PROTECT(generic); if (!isString(generic) || length(generic) != 1) error(_("invalid generic argument to 'NextMethod'")); if (CHAR(STRING_ELT(generic, 0))[0] == '\0') error(_("generic function not specified")); /* determine whether we are in a Group dispatch */ group = findVarInFrame3(R_GlobalContext->sysparent, R_dot_Group, TRUE); if (group == R_UnboundValue) PROTECT(group = mkString("")); else PROTECT(group); if (!isString(group) || length(group) != 1) error(_("invalid 'group' argument found in 'NextMethod'")); /* determine the root: either the group or the generic will be it */ if (CHAR(STRING_ELT(group, 0))[0] == '\0') basename = generic; else basename = group; nextfun = R_NilValue; /* Find the method currently being invoked and jump over the current call If t is R_UnboundValue then we called the current method directly */ method = findVarInFrame3(R_GlobalContext->sysparent, R_dot_Method, TRUE); if( method != R_UnboundValue) { const char *ss; if( !isString(method) ) error(_("wrong value for .Method")); for(i = 0; i < length(method); i++) { ss = translateChar(STRING_ELT(method, i)); if(strlen(ss) >= 512) error(_("method name too long in '%s'"), ss); snprintf(b, 512, "%s", ss); if(strlen(b)) break; } /* for binary operators check that the second argument's method is the same or absent */ for(j = i; j < length(method); j++) { const char *ss = translateChar(STRING_ELT(method, j)); if(strlen(ss) >= 512) error(_("method name too long in '%s'"), ss); snprintf(bb, 512, "%s", ss); if (strlen(bb) && strcmp(b,bb)) warning(_("Incompatible methods ignored")); } } else { if(strlen(CHAR(PRINTNAME(CAR(cptr->call)))) >= 512) error(_("call name too long in '%s'"), EncodeChar(PRINTNAME(CAR(cptr->call)))); snprintf(b, 512, "%s", CHAR(PRINTNAME(CAR(cptr->call)))); } sb = translateChar(STRING_ELT(basename, 0)); for (j = 0; j < length(klass); j++) { sk = translateChar(STRING_ELT(klass, j)); if(strlen(sb) + strlen(sk) + 2 > 512) error(_("class name too long in '%s'"), sb); snprintf(buf, 512, "%s.%s", sb, sk); if (!strcmp(buf, b)) break; } if (!strcmp(buf, b)) /* we found a match and start from there */ j++; else j = 0; /*no match so start with the first element of .Class */ /* we need the value of i on exit from the for loop to figure out how many classes to drop. */ sg = translateChar(STRING_ELT(generic, 0)); for (i = j ; i < length(klass); i++) { sk = translateChar(STRING_ELT(klass, i)); if(strlen(sg) + strlen(sk) + 2 > 512) error(_("class name too long in '%s'"), sg); snprintf(buf, 512, "%s.%s", sg, sk); nextfun = R_LookupMethod(install(buf), env, callenv, defenv); if (isFunction(nextfun)) break; if (group != R_UnboundValue) { /* if not Generic.foo, look for Group.foo */ if(strlen(sb) + strlen(sk) + 2 > 512) error(_("class name too long in '%s'"), sb); snprintf(buf, 512, "%s.%s", sb, sk); nextfun = R_LookupMethod(install(buf), env, callenv, defenv); if(isFunction(nextfun)) break; } if (isFunction(nextfun)) break; } if (!isFunction(nextfun)) { snprintf(buf, 512, "%s.default", sg); nextfun = R_LookupMethod(install(buf), env, callenv, defenv); /* If there is no default method, try the generic itself, provided it is primitive or a wrapper for a .Internal function of the same name. */ if (!isFunction(nextfun)) { t = install(sg); nextfun = findVar(t, env); if (TYPEOF(nextfun) == PROMSXP) nextfun = eval(nextfun, env); if (!isFunction(nextfun)) error(_("no method to invoke")); if (TYPEOF(nextfun) == CLOSXP) { if (INTERNAL(t) != R_NilValue) nextfun = INTERNAL(t); else error(_("no method to invoke")); } } } PROTECT(s = allocVector(STRSXP, length(klass) - i)); PROTECT(klass = duplicate(klass)); PROTECT(m = allocSExp(ENVSXP)); for (j = 0; j < length(s); j++) SET_STRING_ELT(s, j, duplicate(STRING_ELT(klass, i++))); setAttrib(s, install("previous"), klass); defineVar(R_dot_Class, s, m); /* It is possible that if a method was called directly that 'method' is unset */ if (method != R_UnboundValue) { /* for Ops we need `method' to be a vector */ PROTECT(method = duplicate(method)); for(j = 0; j < length(method); j++) { if (strlen(CHAR(STRING_ELT(method,j)))) SET_STRING_ELT(method, j, mkChar(buf)); } } else PROTECT(method = mkString(buf)); defineVar(R_dot_Method, method, m); defineVar(R_dot_GenericCallEnv, callenv, m); defineVar(R_dot_GenericDefEnv, defenv, m); method = install(buf); defineVar(R_dot_Generic, generic, m); defineVar(R_dot_Group, group, m); SETCAR(newcall, method); /* applyMethod expects that the parent of the caller is the caller of the generic, so fixup by brute force. This should fix PR#15267 --pd */ R_GlobalContext->sysparent = callenv; ans = applyMethod(newcall, nextfun, matchedarg, env, m); UNPROTECT(10); return(ans); } /* primitive */ SEXP attribute_hidden do_unclass(SEXP call, SEXP op, SEXP args, SEXP env) { checkArity(op, args); check1arg(args, call, "x"); switch(TYPEOF(CAR(args))) { case ENVSXP: errorcall(call, _("cannot unclass an environment")); break; case EXTPTRSXP: errorcall(call, _("cannot unclass an external pointer")); break; default: break; } if (isObject(CAR(args))) { if (MAYBE_REFERENCED(CAR(args))) SETCAR(args, shallow_duplicate(CAR(args))); setAttrib(CAR(args), R_ClassSymbol, R_NilValue); } return CAR(args); } /* NOTE: Fast inherits(x, what) in ../include/Rinlinedfuns.h * ---- ----------------- */ /** C API for R inherits(x, what, which) * * @param x any R object * @param what character vector * @param which logical: "want vector result" ? * * @return if which is false, logical TRUE or FALSE * if which is true, integer vector of length(what) .. */ static SEXP inherits3(SEXP x, SEXP what, SEXP which) { const void *vmax = vmaxget(); SEXP klass, rval = R_NilValue /* -Wall */; if(IS_S4_OBJECT(x)) PROTECT(klass = R_data_class2(x)); else PROTECT(klass = R_data_class(x, FALSE)); int nclass = length(klass); if(!isString(what)) error(_("'what' must be a character vector")); int j, nwhat = length(what); if( !isLogical(which) || (length(which) != 1) ) error(_("'which' must be a length 1 logical vector")); int isvec = asLogical(which); #ifdef _be_too_picky_ if(IS_S4_OBJECT(x) && nwhat == 1 && !isvec && !isNull(R_getClassDef(translateChar(STRING_ELT(what, 0))))) warning(_("use 'is()' instead of 'inherits()' on S4 objects")); #endif if(isvec) PROTECT(rval = allocVector(INTSXP, nwhat)); for(j = 0; j < nwhat; j++) { const char *ss = translateChar(STRING_ELT(what, j)); int i; if(isvec) INTEGER(rval)[j] = 0; for(i = 0; i < nclass; i++) { if(!strcmp(translateChar(STRING_ELT(klass, i)), ss)) { if(isvec) INTEGER(rval)[j] = i+1; else { UNPROTECT(1); return mkTrue(); } break; } } } vmaxset(vmax); if(!isvec) { UNPROTECT(1); return mkFalse(); } UNPROTECT(2); return rval; } SEXP attribute_hidden do_inherits(SEXP call, SEXP op, SEXP args, SEXP env) { checkArity(op, args); return inherits3(/* x = */ CAR(args), /* what = */ CADR(args), /* which = */ CADDR(args)); } /* ============================================================== code from here on down is support for the methods package ============================================================== */ /** * Return the 0-based index of an is() match in a vector of class-name * strings terminated by an empty string. Returns -1 for no match. * * @param x an R object, about which we want is(x, .) information. * @param valid vector of possible matches terminated by an empty string. * @param rho the environment in which the class definitions exist. * * @return index of match or -1 for no match */ int R_check_class_and_super(SEXP x, const char **valid, SEXP rho) { int ans; SEXP cl = getAttrib(x, R_ClassSymbol); const char *class = CHAR(asChar(cl)); for (ans = 0; ; ans++) { if (!strlen(valid[ans])) // empty string break; if (!strcmp(class, valid[ans])) return ans; } /* if not found directly, now search the non-virtual super classes :*/ if(IS_S4_OBJECT(x)) { /* now try the superclasses, i.e., try is(x, "...."); superCl := .selectSuperClasses(getClass("....")@contains, dropVirtual=TRUE) */ SEXP classExts, superCl, _call; static SEXP s_contains = NULL, s_selectSuperCl = NULL; int i; if(!s_contains) { s_contains = install("contains"); s_selectSuperCl = install(".selectSuperClasses"); } PROTECT(classExts = R_do_slot(R_getClassDef(class), s_contains)); PROTECT(_call = lang3(s_selectSuperCl, classExts, /* dropVirtual = */ ScalarLogical(1))); superCl = eval(_call, rho); UNPROTECT(2); PROTECT(superCl); for(i=0; i < length(superCl); i++) { const char *s_class = CHAR(STRING_ELT(superCl, i)); for (ans = 0; ; ans++) { if (!strlen(valid[ans])) break; if (!strcmp(s_class, valid[ans])) { UNPROTECT(1); return ans; } } } UNPROTECT(1); } return -1; } /** * Return the 0-based index of an is() match in a vector of class-name * strings terminated by an empty string. Returns -1 for no match. * Strives to find the correct environment() for is(), using .classEnv() * (from \pkg{methods}). * * @param x an R object, about which we want is(x, .) information. * @param valid vector of possible matches terminated by an empty string. * * @return index of match or -1 for no match */ int R_check_class_etc(SEXP x, const char **valid) { static SEXP meth_classEnv = NULL; SEXP cl = getAttrib(x, R_ClassSymbol), rho = R_GlobalEnv, pkg; if(!meth_classEnv) meth_classEnv = install(".classEnv"); pkg = getAttrib(cl, R_PackageSymbol); /* ==R== packageSlot(class(x)) */ if(!isNull(pkg)) { /* find rho := correct class Environment */ SEXP clEnvCall; // FIXME: fails if 'methods' is not loaded. PROTECT(clEnvCall = lang2(meth_classEnv, cl)); rho = eval(clEnvCall, R_MethodsNamespace); UNPROTECT(1); if(!isEnvironment(rho)) error(_("could not find correct environment; please report!")); } return R_check_class_and_super(x, valid, rho); } /* standardGeneric: uses a pointer to R_standardGeneric, to be initialized when the methods namespace is loaded, via R_initMethodDispatch. */ static R_stdGen_ptr_t R_standardGeneric_ptr = 0; static SEXP dispatchNonGeneric(SEXP name, SEXP env, SEXP fdef); #define NOT_METHODS_DISPATCH_PTR(ptr) (ptr == 0 || ptr == dispatchNonGeneric) static R_stdGen_ptr_t R_get_standardGeneric_ptr(void) { return R_standardGeneric_ptr; } /* Also called from R_initMethodDispatch in methods C code, which is called when the methods namespace is loaded. */ R_stdGen_ptr_t R_set_standardGeneric_ptr(R_stdGen_ptr_t val, SEXP envir) { R_stdGen_ptr_t old = R_standardGeneric_ptr; R_standardGeneric_ptr = val; if(envir && !isNull(envir)) R_MethodsNamespace = envir; /* just in case ... */ if(!R_MethodsNamespace) R_MethodsNamespace = R_GlobalEnv; return old; } static SEXP R_isMethodsDispatchOn(SEXP onOff) { R_stdGen_ptr_t old = R_get_standardGeneric_ptr(); int ival = !NOT_METHODS_DISPATCH_PTR(old); if(length(onOff) > 0) { Rboolean onOffValue = asLogical(onOff); if(onOffValue == NA_INTEGER) error(_("'onOff' must be TRUE or FALSE")); else if(onOffValue == FALSE) R_set_standardGeneric_ptr(NULL, R_GlobalEnv); // TRUE is not currently used else if(NOT_METHODS_DISPATCH_PTR(old)) { // so not already on // This may not work correctly: the default arg is incorrect. warning("R_isMethodsDispatchOn(TRUE) called -- may not work correctly"); // FIXME: use call = PROTECT(lang1(install("initMethodDispatch"))); SEXP call = PROTECT(allocList(2)); SETCAR(call, install("initMethodDispatch")); eval(call, R_MethodsNamespace); // only works with methods loaded UNPROTECT(1); } } return ScalarLogical(ival); } /* simpler version for internal use, in attrib.c and print.c */ attribute_hidden Rboolean isMethodsDispatchOn(void) { return !NOT_METHODS_DISPATCH_PTR(R_standardGeneric_ptr); } /* primitive for .isMethodsDispatchOn This is generally called without an arg, but is call with onOff=FALSE when package methods is detached/unloaded. It seems it is not currently called with onOff = TRUE (and would not have worked prior to 3.0.2). */ attribute_hidden SEXP do_S4on(SEXP call, SEXP op, SEXP args, SEXP env) { if(length(args) == 0) return ScalarLogical(isMethodsDispatchOn()); return R_isMethodsDispatchOn(CAR(args)); } static SEXP dispatchNonGeneric(SEXP name, SEXP env, SEXP fdef) { /* dispatch the non-generic definition of `name'. Used to trap calls to standardGeneric during the loading of the methods package */ SEXP e, value, rho, fun, symbol; RCNTXT *cptr; /* find a non-generic function */ symbol = installTrChar(asChar(name)); for(rho = ENCLOS(env); rho != R_EmptyEnv; rho = ENCLOS(rho)) { fun = findVarInFrame3(rho, symbol, TRUE); if(fun == R_UnboundValue) continue; switch(TYPEOF(fun)) { case CLOSXP: value = findVarInFrame3(CLOENV(fun), R_dot_Generic, TRUE); if(value == R_UnboundValue) break; case BUILTINSXP: case SPECIALSXP: default: /* in all other cases, go on to the parent environment */ break; } fun = R_UnboundValue; } fun = SYMVALUE(symbol); if(fun == R_UnboundValue) error(_("unable to find a non-generic version of function \"%s\""), translateChar(asChar(name))); cptr = R_GlobalContext; /* check this is the right context */ while (cptr != R_ToplevelContext) { if (cptr->callflag & CTXT_FUNCTION ) if (cptr->cloenv == env) break; cptr = cptr->nextcontext; } PROTECT(e = duplicate(R_syscall(0, cptr))); SETCAR(e, fun); /* evaluate a call the non-generic with the same arguments and from the same environment as the call to the generic version */ value = eval(e, cptr->sysparent); UNPROTECT(1); return value; } static SEXP get_this_generic(SEXP args); SEXP attribute_hidden do_standardGeneric(SEXP call, SEXP op, SEXP args, SEXP env) { SEXP arg, value, fdef; R_stdGen_ptr_t ptr = R_get_standardGeneric_ptr(); checkArity(op, args); check1arg(args, call, "f"); if(!ptr) { warningcall(call, _("'standardGeneric' called without 'methods' dispatch enabled (will be ignored)")); R_set_standardGeneric_ptr(dispatchNonGeneric, NULL); ptr = R_get_standardGeneric_ptr(); } checkArity(op, args); /* set to -1 */ arg = CAR(args); if(!isValidStringF(arg)) errorcall(call, _("argument to 'standardGeneric' must be a non-empty character string")); PROTECT(fdef = get_this_generic(args)); if(isNull(fdef)) error(_("call to standardGeneric(\"%s\") apparently not from the body of that generic function"), translateChar(STRING_ELT(arg, 0))); value = (*ptr)(arg, env, fdef); UNPROTECT(1); return value; } static int maxMethodsOffset = 0, curMaxOffset; static Rboolean allowPrimitiveMethods = TRUE; typedef enum {NO_METHODS, NEEDS_RESET, HAS_METHODS, SUPPRESSED} prim_methods_t; static prim_methods_t *prim_methods; static SEXP *prim_generics; static SEXP *prim_mlist; #define DEFAULT_N_PRIM_METHODS 100 /* This is used in the methods package, in src/methods_list_dispatch.c */ SEXP R_set_prim_method(SEXP fname, SEXP op, SEXP code_vec, SEXP fundef, SEXP mlist) { const char *code_string; const void *vmax = vmaxget(); if(!isValidString(code_vec)) error(_("argument 'code' must be a character string")); code_string = translateChar(asChar(code_vec)); /* with a NULL op, turns all primitive matching off or on (used to avoid possible infinite recursion in methods computations*/ if(op == R_NilValue) { SEXP value; value = allowPrimitiveMethods ? mkTrue() : mkFalse(); switch(code_string[0]) { case 'c': case 'C':/* clear */ allowPrimitiveMethods = FALSE; break; case 's': case 'S': /* set */ allowPrimitiveMethods = TRUE; break; default: /* just report the current state */ break; } return value; } do_set_prim_method(op, code_string, fundef, mlist); vmaxset(vmax); return fname; } SEXP R_primitive_methods(SEXP op) { int offset = PRIMOFFSET(op); if(offset < 0 || offset > curMaxOffset) return R_NilValue; else { SEXP value = prim_mlist[offset]; return value ? value : R_NilValue; } } SEXP R_primitive_generic(SEXP op) { int offset = PRIMOFFSET(op); if(offset < 0 || offset > curMaxOffset) return R_NilValue; else { SEXP value = prim_generics[offset]; return value ? value : R_NilValue; } } /* This is used in the methods package, in src/methods_list_dispatch.c */ SEXP do_set_prim_method(SEXP op, const char *code_string, SEXP fundef, SEXP mlist) { int offset = 0; prim_methods_t code = NO_METHODS; /* -Wall */ SEXP value; Rboolean errorcase = FALSE; switch(code_string[0]) { case 'c': /* clear */ code = NO_METHODS; break; case 'r': /* reset */ code = NEEDS_RESET; break; case 's': /* set or suppress */ switch(code_string[1]) { case 'e': code = HAS_METHODS; break; case 'u': code = SUPPRESSED; break; default: errorcase = TRUE; } break; default: errorcase = TRUE; } if(errorcase) { error(_("invalid primitive methods code (\"%s\"): should be \"clear\", \"reset\", \"set\", or \"suppress\""), code_string); return R_NilValue; } switch(TYPEOF(op)) { case BUILTINSXP: case SPECIALSXP: offset = PRIMOFFSET(op); break; default: error(_("invalid object: must be a primitive function")); } if(offset >= maxMethodsOffset) { int n; n = offset + 1; if(n < DEFAULT_N_PRIM_METHODS) n = DEFAULT_N_PRIM_METHODS; if(n < 2*maxMethodsOffset) n = 2 * maxMethodsOffset; if(prim_methods) { int i; prim_methods = Realloc(prim_methods, n, prim_methods_t); prim_generics = Realloc(prim_generics, n, SEXP); prim_mlist = Realloc(prim_mlist, n, SEXP); /* Realloc does not clear the added memory, hence: */ for (i = maxMethodsOffset ; i < n ; i++) { prim_methods[i] = NO_METHODS; prim_generics[i] = NULL; prim_mlist[i] = NULL; } } else { prim_methods = Calloc(n, prim_methods_t); prim_generics = Calloc(n, SEXP); prim_mlist = Calloc(n, SEXP); } maxMethodsOffset = n; } if(offset > curMaxOffset) curMaxOffset = offset; prim_methods[offset] = code; /* store a preserved pointer to the generic function if there is not one there currently. Unpreserve it if no more methods, but don't replace it otherwise: the generic definition is not allowed to change while it's still defined! (the stored methods list can, however) */ value = prim_generics[offset]; if(code == SUPPRESSED) {} /* leave the structure alone */ else if(code == NO_METHODS && prim_generics[offset]) { R_ReleaseObject(prim_generics[offset]); prim_generics[offset] = 0; prim_mlist[offset] = 0; } else if(fundef && !isNull(fundef) && !prim_generics[offset]) { if(TYPEOF(fundef) != CLOSXP) error(_("the formal definition of a primitive generic must be a function object (got type '%s')"), type2char(TYPEOF(fundef))); R_PreserveObject(fundef); prim_generics[offset] = fundef; } if(code == HAS_METHODS) { if(!mlist || isNull(mlist)) { /* turning methods back on after a SUPPRESSED */ } else { if(prim_mlist[offset]) R_ReleaseObject(prim_mlist[offset]); R_PreserveObject(mlist); prim_mlist[offset] = mlist; } } return value; } static SEXP get_primitive_methods(SEXP op, SEXP rho) { SEXP f, e, val; int nprotect = 0; f = PROTECT(allocVector(STRSXP, 1)); nprotect++; SET_STRING_ELT(f, 0, mkChar(PRIMNAME(op))); PROTECT(e = allocVector(LANGSXP, 2)); nprotect++; SETCAR(e, install("getGeneric")); val = CDR(e); SETCAR(val, f); val = eval(e, rho); /* a rough sanity check that this looks like a generic function */ if(TYPEOF(val) != CLOSXP || !IS_S4_OBJECT(val)) error(_("object returned as generic function \"%s\" does not appear to be one"), PRIMNAME(op)); UNPROTECT(nprotect); return CLOENV(val); } /* get the generic function, defined to be the function definition for the call to standardGeneric(), or for primitives, passed as the second argument to standardGeneric. */ static SEXP get_this_generic(SEXP args) { const void *vmax = vmaxget(); SEXP value = R_NilValue; static SEXP gen_name; int i, n; RCNTXT *cptr; const char *fname; /* a second argument to the call, if any, is taken as the function */ if(CDR(args) != R_NilValue) return CAR(CDR(args)); /* else use sys.function (this is fairly expensive-- would be good * to force a second argument if possible) */ PROTECT(args); if(!gen_name) gen_name = install("generic"); cptr = R_GlobalContext; fname = translateChar(asChar(CAR(args))); n = framedepth(cptr); /* check for a matching "generic" slot */ for(i=0; i curMaxOffset || prim_methods[offset] == NO_METHODS || prim_methods[offset] == SUPPRESSED) return(FALSE); return(TRUE); } static SEXP deferred_default_object; SEXP R_deferred_default_method() { if(!deferred_default_object) deferred_default_object = install("__Deferred_Default_Marker__"); return(deferred_default_object); } static R_stdGen_ptr_t quick_method_check_ptr = NULL; void R_set_quick_method_check(R_stdGen_ptr_t value) { quick_method_check_ptr = value; } /* try to dispatch the formal method for this primitive op, by calling the stored generic function corresponding to the op. Requires that the methods be set up to return a special object rather than trying to evaluate the default (which would get us into a loop). */ /* called from DispatchOrEval, DispatchGroup, do_matprod When called from the first the arguments have been enclosed in promises, but not from the other two: there all the arguments have already been evaluated. */ SEXP attribute_hidden R_possible_dispatch(SEXP call, SEXP op, SEXP args, SEXP rho, Rboolean promisedArgs) { SEXP fundef, value, mlist=R_NilValue, s, a, b; int offset; prim_methods_t current; offset = PRIMOFFSET(op); if(offset < 0 || offset > curMaxOffset) error(_("invalid primitive operation given for dispatch")); current = prim_methods[offset]; if(current == NO_METHODS || current == SUPPRESSED) return(NULL); /* check that the methods for this function have been set */ if(current == NEEDS_RESET) { /* get the methods and store them in the in-core primitive method table. The entries will be preserved via R_preserveobject, so later we can just grab mlist from prim_mlist */ do_set_prim_method(op, "suppressed", R_NilValue, mlist); PROTECT(mlist = get_primitive_methods(op, rho)); do_set_prim_method(op, "set", R_NilValue, mlist); current = prim_methods[offset]; /* as revised by do_set_prim_method */ UNPROTECT(1); } mlist = prim_mlist[offset]; if(mlist && !isNull(mlist) && quick_method_check_ptr) { value = (*quick_method_check_ptr)(args, mlist, op); if(isPrimitive(value)) return(NULL); if(isFunction(value)) { /* found a method, call it with promised args */ if(!promisedArgs) { PROTECT(s = promiseArgs(CDR(call), rho)); if (length(s) != length(args)) error(_("dispatch error")); for (a = args, b = s; a != R_NilValue; a = CDR(a), b = CDR(b)) SET_PRVALUE(CAR(b), CAR(a)); value = applyClosure(call, value, s, rho, R_BaseEnv); UNPROTECT(1); return value; } else return applyClosure(call, value, args, rho, R_BaseEnv); } /* else, need to perform full method search */ } fundef = prim_generics[offset]; if(!fundef || TYPEOF(fundef) != CLOSXP) error(_("primitive function \"%s\" has been set for methods but no generic function supplied"), PRIMNAME(op)); /* To do: arrange for the setting to be restored in case of an error in method search */ if(!promisedArgs) { PROTECT(s = promiseArgs(CDR(call), rho)); if (length(s) != length(args)) error(_("dispatch error")); for (a = args, b = s; a != R_NilValue; a = CDR(a), b = CDR(b)) SET_PRVALUE(CAR(b), CAR(a)); value = applyClosure(call, fundef, s, rho, R_BaseEnv); UNPROTECT(1); } else value = applyClosure(call, fundef, args, rho, R_BaseEnv); prim_methods[offset] = current; if(value == deferred_default_object) return NULL; else return value; } SEXP R_do_MAKE_CLASS(const char *what) { static SEXP s_getClass = NULL; SEXP e, call; if(!what) error(_("C level MAKE_CLASS macro called with NULL string pointer")); if(!s_getClass) s_getClass = install("getClass"); PROTECT(call = allocVector(LANGSXP, 2)); SETCAR(call, s_getClass); SETCAR(CDR(call), mkString(what)); e = eval(call, R_MethodsNamespace); UNPROTECT(1); return(e); } /* this very similar, but gives NULL instead of an error for a non-existing class */ SEXP R_getClassDef(const char *what) { static SEXP s_getClassDef = NULL; SEXP e, call; if(!what) error(_("R_getClassDef(.) called with NULL string pointer")); if(!s_getClassDef) s_getClassDef = install("getClassDef"); PROTECT(call = allocVector(LANGSXP, 2)); SETCAR(call, s_getClassDef); SETCAR(CDR(call), mkString(what)); e = eval(call, R_MethodsNamespace); UNPROTECT(1); return(e); } /* in Rinternals.h */ SEXP R_do_new_object(SEXP class_def) { static SEXP s_virtual = NULL, s_prototype, s_className; SEXP e, value; const void *vmax = vmaxget(); if(!s_virtual) { s_virtual = install("virtual"); s_prototype = install("prototype"); s_className = install("className"); } if(!class_def) error(_("C level NEW macro called with null class definition pointer")); e = R_do_slot(class_def, s_virtual); if(asLogical(e) != 0) { /* includes NA, TRUE, or anything other than FALSE */ e = R_do_slot(class_def, s_className); error(_("trying to generate an object from a virtual class (\"%s\")"), translateChar(asChar(e))); } e = R_do_slot(class_def, s_className); value = duplicate(R_do_slot(class_def, s_prototype)); if(TYPEOF(value) == S4SXP || getAttrib(e, R_PackageSymbol) != R_NilValue) { /* Anything but an object from a base "class" (numeric, matrix,..) */ setAttrib(value, R_ClassSymbol, e); SET_S4_OBJECT(value); } vmaxset(vmax); return value; } Rboolean attribute_hidden R_seemsOldStyleS4Object(SEXP object) { SEXP klass; if(!isObject(object) || IS_S4_OBJECT(object)) return FALSE; /* We want to know about S4SXPs with no S4 bit */ /* if(TYPEOF(object) == S4SXP) return FALSE; */ klass = getAttrib(object, R_ClassSymbol); return (klass != R_NilValue && LENGTH(klass) == 1 && getAttrib(klass, R_PackageSymbol) != R_NilValue) ? TRUE: FALSE; } SEXP attribute_hidden do_setS4Object(SEXP call, SEXP op, SEXP args, SEXP env) { checkArity(op, args); SEXP object = CAR(args); int flag = asLogical(CADR(args)), complete = asInteger(CADDR(args)); if(length(CADR(args)) != 1 || flag == NA_INTEGER) error("invalid '%s' argument", "flag"); if(complete == NA_INTEGER) error("invalid '%s' argument", "complete"); if(flag == IS_S4_OBJECT(object)) return object; else return asS4(object, flag, complete); } #ifdef UNUSED SEXP R_get_primname(SEXP object) { SEXP f; if(TYPEOF(object) != BUILTINSXP && TYPEOF(object) != SPECIALSXP) error("'R_get_primname' called on a non-primitive"); PROTECT(f = allocVector(STRSXP, 1)); SET_STRING_ELT(f, 0, mkChar(PRIMNAME(object))); UNPROTECT(1); return f; } #endif Rboolean isS4(SEXP s) { return IS_S4_OBJECT(s); } SEXP asS4(SEXP s, Rboolean flag, int complete) { if(flag == IS_S4_OBJECT(s)) return s; PROTECT(s); if(MAYBE_SHARED(s)) s = shallow_duplicate(s); UNPROTECT(1); if(flag) SET_S4_OBJECT(s); else { if(complete) { SEXP value; /* TENTATIVE: how much does this change? */ if((value = R_getS4DataSlot(s, ANYSXP)) != R_NilValue && !IS_S4_OBJECT(value)) return value; /* else no plausible S3 object*/ else if(complete == 1) /* ordinary case (2, for conditional) */ error(_("object of class \"%s\" does not correspond to a valid S3 object"), CHAR(STRING_ELT(R_data_class(s, FALSE), 0))); else return s; /* unchanged */ } UNSET_S4_OBJECT(s); } return s; }