# $Id: Contact.pm 16123 2009-09-17 12:57:27Z cjfields $ # # BioPerl module for Bio::Expression::Contact # # Please direct questions and support issues to # # Cared for by Allen Day # # Copyright Allen Day # # You may distribute this module under the same terms as perl itself # POD documentation - main docs before the code =head1 NAME Bio::Expression::Contact - DESCRIPTION of Object =head1 SYNOPSIS Give standard usage here =head1 DESCRIPTION Describe the object here =head1 FEEDBACK =head2 Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists =head2 Support Please direct usage questions or support issues to the mailing list: I rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. =head2 Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web: http://bugzilla.open-bio.org/ =head1 AUTHOR - Allen Day Email allenday@ucla.edu =head1 APPENDIX The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ =cut # Let the code begin... package Bio::Expression::Contact; use strict; use base qw(Bio::Root::Root); =head2 new() Usage : my $obj = Bio::Expression::Contact->new(); Function: Builds a new Bio::Expression::Contact object Returns : an instance of Bio::Expression::Contact Args : =cut sub new { my($class,@args) = @_; my $self = $class->SUPER::new(@args); $self->_initialize(@args); return $self; } =head2 _initialize() Usage : $obj->_initialize(%arg); Function: Internal method to initialize a new Bio::Expression::Contact object Returns : true on success Args : passed through to new() =cut sub _initialize { my($self,%arg) = @_; foreach my $arg (keys %arg){ my $marg = $arg; $marg =~ s/^-//; $self->$marg($arg{$arg}) if $self->can($marg); } return 1; } =head2 source() Usage : $obj->source($newval) Function: Example : Returns : value of source (a scalar) Args : on set, new value (a scalar or undef, optional) =cut sub source { my($self,$val) = @_; $self->{'source'} = $val if defined($val); return $self->{'source'}; } =head2 accession() Usage : $obj->accession($newval) Function: Example : Returns : value of accession (a scalar) Args : on set, new value (a scalar or undef, optional) =cut sub accession { my($self,$val) = @_; $self->{'accession'} = $val if defined($val); return $self->{'accession'}; } =head2 name() Usage : $obj->name($newval) Function: Example : Returns : value of name (a scalar) Args : on set, new value (a scalar or undef, optional) =cut sub name { my($self,$val) = @_; $self->{'name'} = $val if defined($val); return $self->{'name'}; } =head2 db() Usage : $obj->db($newval) Function: Example : Returns : value of db (a scalar) Args : on set, new value (a scalar or undef, optional) =cut sub db { my($self,$val) = @_; $self->{'db'} = $val if defined($val); return $self->{'db'}; } 1;