# # # BioPerl module for wrapping statistics # # Please direct questions and support issues to # # Cared for by Chad Matsalla (bioinformatics1 at dieselwurks dot com) # # Copyright Chad Matsalla # # You may distribute this module under the same terms as perl itself # POD documentation - main docs before the code =head1 NAME Bio::Search::GenericStatistics - An object for statistics =head1 SYNOPSIS my $void = $obj->set_statistic("statistic_name","statistic_value"); my $value = $obj->get_statistic("statistic_name"); =head1 DESCRIPTION This is a basic container to hold the statistics returned from a program. =head1 FEEDBACK =head2 Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists =head2 Support Please direct usage questions or support issues to the mailing list: I rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. =head2 Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web: http://bugzilla.open-bio.org/ =head1 AUTHOR - Chad Matsalla Email bioinformatics1 at dieselwurks dot com =head1 CONTRIBUTORS Sendu Bala, bix@sendu.me.uk =head1 APPENDIX The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ =cut # Let the code begin... package Bio::Search::GenericStatistics; use strict; use base qw(Bio::Root::Root Bio::Search::StatisticsI); sub new { my ($class, @args) = @_; my $self = $class->SUPER::new(@args); return $self; } =head2 get_statistic Title : get_statistic Usage : $statistic_object->get_statistic($statistic_name); Function: Get the value of a statistic named $statistic_name Returns : A scalar that should be a string Args : A scalar that should be a string =cut sub get_statistic { my ($self,$arg) = @_; return $self->{stats}->{$arg}; } =head2 set_statistic Title : set_statistic Usage : $statistic_object->set_statistic($statistic_name => $statistic_value); Function: Set the value of a statistic named $statistic_name to $statistic_value Returns : Void Args : A hash containing name=>value pairs =cut sub set_statistic { my ($self,$name,$value) = @_; $self->{stats}->{$name} = $value; } =head2 available_statistics Title : available_statistics Usage : my @statnames = $statistic_object->available_statistics Function: Returns the names of the available statistics Returns : list of available statistic names Args : none =cut sub available_statistics { my $self = shift; return keys %{$self->{stats}}; } 1;