# $Id: GlobalQuery.pm 16123 2009-09-17 12:57:27Z cjfields $ # # BioPerl module for Bio::Tools::EUtilities::Query::GlobalQuery # # Please direct questions and support issues to # # Cared for by Chris Fields # # Copyright Chris Fields # # You may distribute this module under the same terms as perl itself # # POD documentation - main docs before the code # # Part of the EUtilities BioPerl package =head1 NAME Bio::Tools::EUtilities::Query::GlobalQuery - container class for egquery data =head1 SYNOPSIS #### should not create instance directly; Bio::Tools::EUtilities does this #### =head1 DESCRIPTION This is a simple container class for egquery data. =head1 FEEDBACK =head2 Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated. bioperl-l@lists.open-bio.org - General discussion http://www.bioperl.org/wiki/Mailing_lists - About the mailing lists =head2 Support Please direct usage questions or support issues to the mailing list: I rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. =head2 Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web. http://bugzilla.open-bio.org/ =head1 AUTHOR Email cjfields at bioperl dot org =head1 APPENDIX The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ =cut # Let the code begin... package Bio::Tools::EUtilities::Query::GlobalQuery; use strict; use warnings; use base qw(Bio::Root::Root Bio::Tools::EUtilities::EUtilDataI); sub new { my ($class, @args) = @_; my $self = $class->SUPER::new(@args); $self->eutil('egquery'); $self->datatype('globalquery'); return $self; } =head2 get_term Title : get_term Usage : $st = $qd->get_term; Function: retrieve the term for the global search Returns : string Args : none =cut sub get_term { my ($self) = @_; return $self->{'_term'}; } =head2 get_database Title : get_database Usage : $ct = $qd->get_database; Function: retrieve the database Returns : string Args : none =cut sub get_database { my ($self) = @_; return $self->{'_dbname'}; } =head2 get_count Title : get_count Usage : $ct = $qd->get_count; Function: retrieve the count for the database Returns : string Args : none =cut sub get_count { my ($self) = @_; return $self->{'_count'}; } =head2 get_status Title : get_status Usage : $st = $qd->get_status; Function: retrieve the query status for database in db() Returns : string Args : none =cut sub get_status { my ($self) = @_; return $self->{'_status'}; } =head2 get_menu_name Title : get_menu_name Usage : $ct = $qd->get_menu_name; Function: retrieve the full name for the database in db() Returns : string Args : None =cut sub get_menu_name { my $self = shift; return $self->{'_menuname'}; } # private method sub _add_data { my ($self, $data) = @_; map {$self->{'_'.lc $_} = $data->{$_}} keys %$data; } =head2 to_string Title : to_string Usage : $foo->to_string() Function : converts current object to string Returns : none Args : (optional) simple data for text formatting Note : Used generally for debugging and for the print_GlobalQuery method =cut sub to_string { my $self = shift; my $string .= sprintf("%-20s Total:%-10d Status:%s\n", $self->get_database, $self->get_count, $self->get_status); return $string; } 1;