# $Id: WebAgent.pm 16123 2009-09-17 12:57:27Z cjfields $ # # BioPerl module for Bio::WebAgent # # Please direct questions and support issues to # # Cared for by Heikki Lehvaslaiho, heikki-at-bioperl-dot-org # For copyright and disclaimer see below. # # POD documentation - main docs before the code =head1 NAME Bio::WebAgent - A base class for Web (any protocol) access =head1 SYNOPSIS # This is a abstract superclass for bioperl modules accessing web # resources - normally you do not instantiate it but one of its # subclasess. =head1 DESCRIPTION This abstract superclass is a subclass of L which allows protocol independent access of remote locations over the Net. It takes care of error handling, proxies and various net protocols. BioPerl classes accessing the net should inherit from it. For details, see L. The interface is still evolving. For now, two public methods have been copied from Bio::DB::WebDBSeqI: delay() and delay_policy. These are used to prevent overwhelming the server by rapidly repeated . Ideally there should be a common abstract superclass with these. See L. =head1 SEE ALSO L, L, =head1 FEEDBACK =head2 Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists =head2 Support Please direct usage questions or support issues to the mailing list: I rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. =head2 Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web: http://bugzilla.open-bio.org/ =head1 AUTHOR Heikki Lehvaslaiho, heikki-at-bioperl-dot-org =head1 COPYRIGHT Copyright (c) 2003, Heikki Lehvaslaiho and EMBL-EBI. All Rights Reserved. This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself. =head1 DISCLAIMER This software is provided "as is" without warranty of any kind. =head1 APPENDIX The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ =cut # Let the code begin... package Bio::WebAgent; use vars qw($LAST_INVOCATION_TIME); use strict; use base qw(LWP::UserAgent Bio::Root::Root); sub new { my $class = shift; # We make env_proxy the default here, but it can be # over-ridden by $self->env_proxy later, # or by new(env_proxy=>0) at constructor time my $self = $class->SUPER::new(env_proxy => 1); while( @_ ) { my $key = shift; $key =~ s/^-//; my $value = shift; $self->can($key) || next; $self->$key($value); } return $self; # success - we hope! } # ----------------------------------------------------------------------------- =head2 url Usage : $agent->url Returns : URL to reach out to Net Args : string =cut sub url { my ($self,$value) = @_; if( defined $value) { $self->{'_url'} = $value; } return $self->{'_url'}; } =head2 delay Title : delay Usage : $secs = $self->delay([$secs]) Function: get/set number of seconds to delay between fetches Returns : number of seconds to delay Args : new value NOTE: the default is to use the value specified by delay_policy(). This can be overridden by calling this method, or by passing the -delay argument to new(). =cut sub delay { my ($self, $value) = @_; if ($value) { $self->throw("Need a positive integer, not [$value]") unless $value >= 0; $self->{'_delay'} = int $value; } return $self->{'_delay'} || $self->delay_policy; } =head2 delay_policy Title : delay_policy Usage : $secs = $self->delay_policy Function: return number of seconds to delay between calls to remote db Returns : number of seconds to delay Args : none NOTE: The default delay policy is 3s. Override in subclasses to implement other delays. The timer has only second resolution, so the delay will actually be +/- 1s. =cut sub delay_policy { my $self = shift; return 3; } =head2 sleep Title : sleep Usage : $self->sleep Function: sleep for a number of seconds indicated by the delay policy Returns : none Args : none NOTE: This method keeps track of the last time it was called and only imposes a sleep if it was called more recently than the delay_policy() allows. =cut sub sleep { my $self = shift; $LAST_INVOCATION_TIME ||= 0; if (time - $LAST_INVOCATION_TIME < $self->delay) { my $delay = $self->delay - (time - $LAST_INVOCATION_TIME); $self->debug("sleeping for $delay seconds\n"); sleep $delay; } $LAST_INVOCATION_TIME = time; } 1; __END__