2012-10-07 16:05:46,269 - INFO - Beginning variant calling
2012-10-07 16:05:46,269 - INFO - Output will go to ./raw/variants.initial.chr9.vcf
2012-10-07 16:05:46,314 - INFO - The following genomic regions will be searched: [('9', 5000000, 124076172)]
2012-10-07 16:05:46,351 - DEBUG - Adding sample name 1000, from BAM RG:SM tag
2012-10-07 16:05:46,381 - DEBUG - Adding sample name 1011, from BAM RG:SM tag
2012-10-07 16:05:46,412 - DEBUG - Adding sample name 1057, from BAM RG:SM tag
2012-10-07 16:05:46,442 - DEBUG - Adding sample name 1143, from BAM RG:SM tag
2012-10-07 16:05:46,473 - DEBUG - Adding sample name 1145, from BAM RG:SM tag
2012-10-07 16:05:46,503 - DEBUG - Adding sample name 1167, from BAM RG:SM tag
2012-10-07 16:05:46,534 - DEBUG - Adding sample name 1172, from BAM RG:SM tag
2012-10-07 16:05:46,565 - DEBUG - Adding sample name 1200, from BAM RG:SM tag
2012-10-07 16:05:46,595 - DEBUG - Adding sample name 1231, from BAM RG:SM tag
2012-10-07 16:05:46,626 - DEBUG - Adding sample name 1237, from BAM RG:SM tag
2012-10-07 16:05:46,656 - DEBUG - Adding sample name 1291, from BAM RG:SM tag
2012-10-07 16:05:46,687 - DEBUG - Adding sample name 667, from BAM RG:SM tag
2012-10-07 16:05:46,718 - DEBUG - Adding sample name 746, from BAM RG:SM tag
2012-10-07 16:05:46,748 - DEBUG - Adding sample name 747, from BAM RG:SM tag
2012-10-07 16:05:46,779 - DEBUG - Adding sample name 807, from BAM RG:SM tag
2012-10-07 16:05:46,810 - DEBUG - Adding sample name 813, from BAM RG:SM tag
2012-10-07 16:05:46,840 - DEBUG - Adding sample name 851, from BAM RG:SM tag
2012-10-07 16:05:46,871 - DEBUG - Adding sample name 873, from BAM RG:SM tag
2012-10-07 16:05:46,901 - DEBUG - Adding sample name 837, from BAM RG:SM tag
2012-10-07 16:05:46,932 - DEBUG - Adding sample name 1294, from BAM RG:SM tag
2012-10-07 16:05:46,938 - INFO - Processing region 9:5000000-6000000
2012-10-07 16:05:47,147 - DEBUG - Read 80749 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 16:05:47,367 - DEBUG - Read 85322 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 16:05:47,612 - DEBUG - Read 102547 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 16:05:47,876 - DEBUG - Read 100097 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 16:05:48,133 - DEBUG - Read 97480 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 16:05:48,366 - DEBUG - Read 92026 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 16:05:48,613 - DEBUG - Read 98237 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 16:05:48,837 - DEBUG - Read 83238 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 16:05:49,058 - DEBUG - Read 80432 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 16:05:49,288 - DEBUG - Read 87027 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 16:05:49,525 - DEBUG - Read 93312 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 16:05:49,731 - DEBUG - Read 80548 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 16:05:49,949 - DEBUG - Read 82284 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 16:05:50,175 - DEBUG - Read 93536 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 16:05:50,420 - DEBUG - Read 98370 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 16:05:50,628 - DEBUG - Read 78039 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 16:05:50,864 - DEBUG - Read 98098 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 16:05:51,106 - DEBUG - Read 94417 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 16:05:51,296 - DEBUG - Read 72846 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 16:05:51,516 - DEBUG - Read 81333 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 16:05:51,605 - DEBUG - Detected 20095 variants in 80749 reads
2012-10-07 16:05:51,741 - DEBUG - Detected 31551 variants in 85322 reads
2012-10-07 16:05:51,929 - DEBUG - Detected 37525 variants in 102547 reads
2012-10-07 16:05:52,134 - DEBUG - Detected 43979 variants in 100097 reads
2012-10-07 16:05:52,363 - DEBUG - Detected 48971 variants in 97480 reads
2012-10-07 16:05:52,612 - DEBUG - Detected 60161 variants in 92026 reads
2012-10-07 16:05:52,929 - DEBUG - Detected 71815 variants in 98237 reads
2012-10-07 16:05:53,262 - DEBUG - Detected 76398 variants in 83238 reads
2012-10-07 16:05:53,607 - DEBUG - Detected 80945 variants in 80432 reads
2012-10-07 16:05:53,985 - DEBUG - Detected 89345 variants in 87027 reads
2012-10-07 16:05:54,392 - DEBUG - Detected 93442 variants in 93312 reads
2012-10-07 16:05:54,808 - DEBUG - Detected 96587 variants in 80548 reads
2012-10-07 16:05:55,267 - DEBUG - Detected 104647 variants in 82284 reads
2012-10-07 16:05:55,735 - DEBUG - Detected 108518 variants in 93536 reads
2012-10-07 16:05:56,238 - DEBUG - Detected 117216 variants in 98370 reads
2012-10-07 16:05:56,740 - DEBUG - Detected 121193 variants in 78039 reads
2012-10-07 16:05:57,299 - DEBUG - Detected 124387 variants in 98098 reads
2012-10-07 16:05:57,893 - DEBUG - Detected 128563 variants in 94417 reads
2012-10-07 16:05:58,548 - DEBUG - Detected 132410 variants in 72846 reads
2012-10-07 16:05:59,164 - DEBUG - Detected 136264 variants in 81333 reads
2012-10-07 16:06:02,169 - DEBUG - Taking top 8 variants by coverage in window 9:5030019-5030020
2012-10-07 16:06:03,291 - DEBUG - Taking top 8 variants by coverage in window 9:5042215-5042216
2012-10-07 16:06:03,640 - DEBUG - Taking top 8 variants by coverage in window 9:5046374-5046378
2012-10-07 16:06:07,561 - DEBUG - Taking top 8 variants by coverage in window 9:5090442-5090443
2012-10-07 16:06:08,180 - DEBUG - Taking top 8 variants by coverage in window 9:5096780-5096783
2012-10-07 16:06:10,344 - DEBUG - Taking top 8 variants by coverage in window 9:5119775-5119779
2012-10-07 16:06:12,271 - DEBUG - Taking top 8 variants by coverage in window 9:5142020-5142021
2012-10-07 16:06:12,354 - DEBUG - Taking top 8 variants by coverage in window 9:5142083-5142088
2012-10-07 16:06:12,749 - DEBUG - Taking top 8 variants by coverage in window 9:5146019-5146020
2012-10-07 16:06:13,128 - DEBUG - Taking top 8 variants by coverage in window 9:5150361-5150362
2012-10-07 16:06:14,096 - DEBUG - Taking top 8 variants by coverage in window 9:5162378-5162386
2012-10-07 16:06:14,839 - DEBUG - Taking top 8 variants by coverage in window 9:5170061-5170062
2012-10-07 16:06:14,858 - DEBUG - Taking top 8 variants by coverage in window 9:5170073-5170074
2012-10-07 16:06:14,875 - DEBUG - Taking top 8 variants by coverage in window 9:5170083-5170086
2012-10-07 16:06:15,292 - DEBUG - Taking top 8 variants by coverage in window 9:5172540-5172541
2012-10-07 16:06:15,833 - DEBUG - Taking top 8 variants by coverage in window 9:5178847-5178856
2012-10-07 16:06:15,923 - DEBUG - Taking top 8 variants by coverage in window 9:5179892-5179893
2012-10-07 16:06:16,717 - DEBUG - Taking top 8 variants by coverage in window 9:5188479-5188507
2012-10-07 16:06:16,997 - DEBUG - Taking top 8 variants by coverage in window 9:5191139-5191140
2012-10-07 16:06:17,126 - DEBUG - Taking top 8 variants by coverage in window 9:5191681-5191682
2012-10-07 16:06:17,911 - DEBUG - Taking top 8 variants by coverage in window 9:5198446-5198469
2012-10-07 16:06:18,023 - DEBUG - Taking top 8 variants by coverage in window 9:5199371-5199372
2012-10-07 16:06:18,089 - DEBUG - Taking top 8 variants by coverage in window 9:5199413-5199414
2012-10-07 16:06:18,927 - DEBUG - Taking top 8 variants by coverage in window 9:5207521-5207522
2012-10-07 16:06:20,088 - DEBUG - Taking top 8 variants by coverage in window 9:5219527-5219528
2012-10-07 16:06:20,156 - DEBUG - Taking top 8 variants by coverage in window 9:5220537-5220538
2012-10-07 16:06:20,190 - DEBUG - Taking top 8 variants by coverage in window 9:5220750-5220751
2012-10-07 16:06:20,446 - DEBUG - Taking top 8 variants by coverage in window 9:5222643-5222644
2012-10-07 16:06:22,060 - DEBUG - Taking top 8 variants by coverage in window 9:5235748-5235749
2012-10-07 16:06:23,245 - DEBUG - Taking top 8 variants by coverage in window 9:5246881-5246882
2012-10-07 16:06:23,271 - DEBUG - Taking top 8 variants by coverage in window 9:5246960-5246963
2012-10-07 16:06:23,371 - DEBUG - Taking top 8 variants by coverage in window 9:5247904-5247905
2012-10-07 16:06:23,465 - DEBUG - Taking top 8 variants by coverage in window 9:5254018-5254019
2012-10-07 16:06:23,555 - DEBUG - Taking top 8 variants by coverage in window 9:5254734-5254735
2012-10-07 16:06:25,071 - DEBUG - Taking top 8 variants by coverage in window 9:5270181-5270182
2012-10-07 16:06:25,668 - DEBUG - Taking top 8 variants by coverage in window 9:5284558-5284559
2012-10-07 16:06:26,167 - DEBUG - Taking top 8 variants by coverage in window 9:5293430-5293432
2012-10-07 16:06:26,939 - DEBUG - Taking top 8 variants by coverage in window 9:5306813-5306814
2012-10-07 16:06:27,675 - DEBUG - Taking top 8 variants by coverage in window 9:5317785-5317786
2012-10-07 16:06:28,451 - DEBUG - Taking top 8 variants by coverage in window 9:5330327-5330328
2012-10-07 16:06:29,479 - DEBUG - Taking top 8 variants by coverage in window 9:5343097-5343098
2012-10-07 16:06:29,540 - DEBUG - Taking top 8 variants by coverage in window 9:5343167-5343168
2012-10-07 16:06:29,680 - DEBUG - Taking top 8 variants by coverage in window 9:5343300-5343302
2012-10-07 16:06:30,722 - DEBUG - Taking top 8 variants by coverage in window 9:5358636-5358637
2012-10-07 16:06:30,893 - DEBUG - Taking top 8 variants by coverage in window 9:5365306-5365307
2012-10-07 16:06:31,530 - DEBUG - Taking top 8 variants by coverage in window 9:5371374-5371375
2012-10-07 16:06:31,655 - DEBUG - Taking top 8 variants by coverage in window 9:5373266-5373267
2012-10-07 16:06:32,258 - DEBUG - Taking top 8 variants by coverage in window 9:5381015-5381016
2012-10-07 16:06:32,464 - DEBUG - Taking top 8 variants by coverage in window 9:5383206-5383212
2012-10-07 16:06:32,530 - DEBUG - Taking top 8 variants by coverage in window 9:5383268-5383275
2012-10-07 16:06:32,725 - DEBUG - Taking top 8 variants by coverage in window 9:5384680-5384697
2012-10-07 16:06:32,909 - DEBUG - Taking top 8 variants by coverage in window 9:5387268-5387269
2012-10-07 16:06:33,390 - DEBUG - Taking top 8 variants by coverage in window 9:5393515-5393516
2012-10-07 16:06:33,404 - DEBUG - Taking top 8 variants by coverage in window 9:5393549-5393550
2012-10-07 16:06:33,474 - DEBUG - Taking top 8 variants by coverage in window 9:5393844-5393845
2012-10-07 16:06:34,240 - DEBUG - Taking top 8 variants by coverage in window 9:5402164-5402165
2012-10-07 16:06:35,054 - DEBUG - Taking top 8 variants by coverage in window 9:5411668-5411669
2012-10-07 16:06:35,324 - DEBUG - Taking top 8 variants by coverage in window 9:5415912-5415915
2012-10-07 16:06:35,331 - DEBUG - Taking top 8 variants by coverage in window 9:5415916-5415917
2012-10-07 16:06:35,496 - DEBUG - Taking top 8 variants by coverage in window 9:5419394-5419395
2012-10-07 16:06:36,721 - DEBUG - Taking top 8 variants by coverage in window 9:5447618-5447619
2012-10-07 16:06:36,893 - DEBUG - Taking top 8 variants by coverage in window 9:5451272-5451294
2012-10-07 16:06:38,534 - DEBUG - Taking top 8 variants by coverage in window 9:5470652-5470653
2012-10-07 16:06:39,093 - DEBUG - Taking top 8 variants by coverage in window 9:5479181-5479182
2012-10-07 16:06:40,542 - DEBUG - Taking top 8 variants by coverage in window 9:5494100-5494102
2012-10-07 16:06:40,551 - DEBUG - Taking top 8 variants by coverage in window 9:5494863-5494873
2012-10-07 16:06:40,932 - DEBUG - Taking top 8 variants by coverage in window 9:5500578-5500582
2012-10-07 16:06:42,416 - DEBUG - Taking top 8 variants by coverage in window 9:5520335-5520340
2012-10-07 16:06:42,698 - DEBUG - Taking top 8 variants by coverage in window 9:5523390-5523393
2012-10-07 16:06:42,723 - DEBUG - Taking top 8 variants by coverage in window 9:5523435-5523436
2012-10-07 16:06:44,828 - DEBUG - Taking top 8 variants by coverage in window 9:5555986-5555987
2012-10-07 16:06:45,244 - DEBUG - Taking top 8 variants by coverage in window 9:5563893-5563900
2012-10-07 16:06:45,370 - DEBUG - Taking top 8 variants by coverage in window 9:5566474-5566475
2012-10-07 16:06:45,997 - DEBUG - Taking top 8 variants by coverage in window 9:5577215-5577217
2012-10-07 16:06:46,009 - DEBUG - Taking top 8 variants by coverage in window 9:5577388-5577389
2012-10-07 16:06:49,647 - DEBUG - Taking top 8 variants by coverage in window 9:5625871-5625874
2012-10-07 16:06:52,489 - DEBUG - Taking top 8 variants by coverage in window 9:5656642-5656643
2012-10-07 16:06:53,400 - DEBUG - Taking top 8 variants by coverage in window 9:5667499-5667520
2012-10-07 16:06:53,809 - DEBUG - Taking top 8 variants by coverage in window 9:5673304-5673305
2012-10-07 16:06:53,822 - DEBUG - Taking top 8 variants by coverage in window 9:5673306-5673307
2012-10-07 16:06:56,241 - DEBUG - Taking top 8 variants by coverage in window 9:5701978-5701979
2012-10-07 16:06:57,486 - DEBUG - Taking top 8 variants by coverage in window 9:5719558-5719566
2012-10-07 16:06:57,650 - DEBUG - Taking top 8 variants by coverage in window 9:5721278-5721279
2012-10-07 16:06:58,727 - DEBUG - Taking top 8 variants by coverage in window 9:5735958-5735959
2012-10-07 16:06:59,088 - DEBUG - Taking top 8 variants by coverage in window 9:5740972-5740973
2012-10-07 16:07:00,483 - DEBUG - Taking top 8 variants by coverage in window 9:5757050-5757051
2012-10-07 16:07:01,704 - DEBUG - Taking top 8 variants by coverage in window 9:5769344-5769345
2012-10-07 16:07:02,383 - DEBUG - Taking top 8 variants by coverage in window 9:5780362-5780365
2012-10-07 16:07:02,828 - DEBUG - Taking top 8 variants by coverage in window 9:5792044-5792060
2012-10-07 16:07:03,945 - DEBUG - Taking top 8 variants by coverage in window 9:5805775-5805776
2012-10-07 16:07:06,256 - DEBUG - Taking top 8 variants by coverage in window 9:5831877-5831880
2012-10-07 16:07:06,328 - DEBUG - Taking top 8 variants by coverage in window 9:5831899-5831902
2012-10-07 16:07:07,646 - DEBUG - Taking top 8 variants by coverage in window 9:5844238-5844239
2012-10-07 16:07:08,243 - DEBUG - Taking top 8 variants by coverage in window 9:5848637-5848638
2012-10-07 16:07:10,082 - DEBUG - Taking top 8 variants by coverage in window 9:5865504-5865505
2012-10-07 16:07:10,966 - DEBUG - Taking top 8 variants by coverage in window 9:5872101-5872107
2012-10-07 16:07:11,011 - DEBUG - Taking top 8 variants by coverage in window 9:5872113-5872114
2012-10-07 16:07:11,717 - DEBUG - Taking top 8 variants by coverage in window 9:5876535-5876536
2012-10-07 16:07:13,493 - DEBUG - Taking top 8 variants by coverage in window 9:5895474-5895478
2012-10-07 16:07:15,385 - DEBUG - Taking top 8 variants by coverage in window 9:5912305-5912306
2012-10-07 16:07:15,395 - DEBUG - Taking top 8 variants by coverage in window 9:5912315-5912316
2012-10-07 16:07:17,716 - DEBUG - Taking top 8 variants by coverage in window 9:5941580-5941584
2012-10-07 16:07:18,391 - DEBUG - Taking top 8 variants by coverage in window 9:5949790-5949791
2012-10-07 16:07:19,298 - DEBUG - Taking top 8 variants by coverage in window 9:5961521-5961522
2012-10-07 16:07:19,419 - DEBUG - Taking top 8 variants by coverage in window 9:5963038-5963039
2012-10-07 16:07:19,498 - DEBUG - Taking top 8 variants by coverage in window 9:5963782-5963783
2012-10-07 16:07:20,714 - DEBUG - Taking top 8 variants by coverage in window 9:5979155-5979166
2012-10-07 16:07:22,068 - DEBUG - Taking top 8 variants by coverage in window 9:5998426-5998445
2012-10-07 16:07:23,026 - DEBUG - Read 81041 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 16:07:23,243 - DEBUG - Read 87043 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 16:07:23,483 - DEBUG - Read 104733 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 16:07:23,742 - DEBUG - Read 101152 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 16:07:23,995 - DEBUG - Read 99101 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 16:07:24,226 - DEBUG - Read 93632 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 16:07:24,470 - DEBUG - Read 99736 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 16:07:24,696 - DEBUG - Read 86277 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 16:07:24,910 - DEBUG - Read 82189 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 16:07:25,140 - DEBUG - Read 88918 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 16:07:25,381 - DEBUG - Read 94905 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 16:07:25,585 - DEBUG - Read 82210 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 16:07:25,804 - DEBUG - Read 84666 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 16:07:26,026 - DEBUG - Read 93580 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 16:07:26,272 - DEBUG - Read 101902 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 16:07:26,484 - DEBUG - Read 81784 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 16:07:26,713 - DEBUG - Read 97463 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 16:07:26,958 - DEBUG - Read 96685 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 16:07:27,152 - DEBUG - Read 77185 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 16:07:27,400 - DEBUG - Read 82883 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 16:07:27,501 - DEBUG - Detected 23726 variants in 81041 reads
2012-10-07 16:07:27,658 - DEBUG - Detected 35390 variants in 87043 reads
2012-10-07 16:07:27,869 - DEBUG - Detected 44777 variants in 104733 reads
2012-10-07 16:07:28,116 - DEBUG - Detected 55453 variants in 101152 reads
2012-10-07 16:07:28,401 - DEBUG - Detected 61156 variants in 99101 reads
2012-10-07 16:07:28,712 - DEBUG - Detected 68313 variants in 93632 reads
2012-10-07 16:07:29,065 - DEBUG - Detected 81490 variants in 99736 reads
2012-10-07 16:07:29,461 - DEBUG - Detected 86161 variants in 86277 reads
2012-10-07 16:07:29,878 - DEBUG - Detected 93255 variants in 82189 reads
2012-10-07 16:07:30,372 - DEBUG - Detected 100946 variants in 88918 reads
2012-10-07 16:07:30,859 - DEBUG - Detected 107346 variants in 94905 reads
2012-10-07 16:07:31,363 - DEBUG - Detected 111037 variants in 82210 reads
2012-10-07 16:07:31,888 - DEBUG - Detected 114804 variants in 84666 reads
2012-10-07 16:07:32,440 - DEBUG - Detected 118778 variants in 93580 reads
2012-10-07 16:07:33,076 - DEBUG - Detected 125905 variants in 101902 reads
2012-10-07 16:07:33,655 - DEBUG - Detected 129575 variants in 81784 reads
2012-10-07 16:07:34,288 - DEBUG - Detected 133137 variants in 97463 reads
2012-10-07 16:07:34,933 - DEBUG - Detected 137146 variants in 96685 reads
2012-10-07 16:07:35,575 - DEBUG - Detected 141020 variants in 77185 reads
2012-10-07 16:07:36,243 - DEBUG - Detected 145657 variants in 82883 reads
2012-10-07 16:07:39,538 - DEBUG - Taking top 8 variants by coverage in window 9:6024096-6024097
2012-10-07 16:07:40,223 - DEBUG - Taking top 8 variants by coverage in window 9:6030371-6030373
2012-10-07 16:07:40,629 - DEBUG - Taking top 8 variants by coverage in window 9:6033397-6033398
2012-10-07 16:07:42,459 - DEBUG - Taking top 8 variants by coverage in window 9:6047605-6047607
2012-10-07 16:07:43,999 - DEBUG - Taking top 8 variants by coverage in window 9:6068250-6068261
2012-10-07 16:07:44,114 - DEBUG - Taking top 8 variants by coverage in window 9:6069629-6069630
2012-10-07 16:07:45,481 - DEBUG - Taking top 8 variants by coverage in window 9:6085340-6085341
2012-10-07 16:07:46,634 - DEBUG - Taking top 8 variants by coverage in window 9:6103685-6103686
2012-10-07 16:07:46,654 - DEBUG - Taking top 8 variants by coverage in window 9:6103697-6103707
2012-10-07 16:07:47,760 - DEBUG - Taking top 8 variants by coverage in window 9:6117505-6117506
2012-10-07 16:07:47,844 - DEBUG - Taking top 8 variants by coverage in window 9:6117678-6117679
2012-10-07 16:07:48,183 - DEBUG - Taking top 8 variants by coverage in window 9:6119922-6119923
2012-10-07 16:07:48,280 - DEBUG - Taking top 8 variants by coverage in window 9:6120496-6120497
2012-10-07 16:07:48,674 - DEBUG - Taking top 8 variants by coverage in window 9:6129475-6129476
2012-10-07 16:07:48,777 - DEBUG - Taking top 8 variants by coverage in window 9:6129799-6129800
2012-10-07 16:07:49,893 - DEBUG - Taking top 8 variants by coverage in window 9:6143964-6143969
2012-10-07 16:07:49,981 - DEBUG - Taking top 8 variants by coverage in window 9:6144378-6144379
2012-10-07 16:07:50,460 - DEBUG - Taking top 8 variants by coverage in window 9:6148271-6148272
2012-10-07 16:07:51,601 - DEBUG - Taking top 8 variants by coverage in window 9:6168073-6168074
2012-10-07 16:07:51,619 - DEBUG - Taking top 8 variants by coverage in window 9:6168084-6168085
2012-10-07 16:07:52,009 - DEBUG - Taking top 8 variants by coverage in window 9:6171529-6171532
2012-10-07 16:07:52,128 - DEBUG - Taking top 8 variants by coverage in window 9:6171562-6171563
2012-10-07 16:07:52,728 - DEBUG - Taking top 8 variants by coverage in window 9:6176365-6176367
2012-10-07 16:07:53,148 - DEBUG - Taking top 8 variants by coverage in window 9:6181982-6181983
2012-10-07 16:07:54,047 - DEBUG - Taking top 8 variants by coverage in window 9:6192842-6192843
2012-10-07 16:07:54,175 - DEBUG - Taking top 8 variants by coverage in window 9:6194863-6194867
2012-10-07 16:07:55,272 - DEBUG - Taking top 8 variants by coverage in window 9:6213952-6213953
2012-10-07 16:07:55,417 - DEBUG - Taking top 8 variants by coverage in window 9:6215306-6215307
2012-10-07 16:07:56,379 - DEBUG - Taking top 8 variants by coverage in window 9:6229990-6229993
2012-10-07 16:07:56,391 - DEBUG - Taking top 8 variants by coverage in window 9:6230696-6230705
2012-10-07 16:07:57,052 - DEBUG - Taking top 8 variants by coverage in window 9:6237805-6237810
2012-10-07 16:07:57,071 - DEBUG - Taking top 8 variants by coverage in window 9:6238029-6238030
2012-10-07 16:07:57,991 - DEBUG - Taking top 8 variants by coverage in window 9:6247997-6247999
2012-10-07 16:07:58,445 - DEBUG - Taking top 8 variants by coverage in window 9:6252258-6252259
2012-10-07 16:07:58,675 - DEBUG - Taking top 8 variants by coverage in window 9:6256784-6256785
2012-10-07 16:07:58,893 - DEBUG - Taking top 8 variants by coverage in window 9:6260539-6260540
2012-10-07 16:07:59,505 - DEBUG - Taking top 8 variants by coverage in window 9:6270339-6270342
2012-10-07 16:08:00,114 - DEBUG - Taking top 8 variants by coverage in window 9:6278164-6278169
2012-10-07 16:08:00,169 - DEBUG - Taking top 8 variants by coverage in window 9:6278232-6278235
2012-10-07 16:08:00,469 - DEBUG - Taking top 8 variants by coverage in window 9:6281751-6281753
2012-10-07 16:08:00,552 - DEBUG - Taking top 8 variants by coverage in window 9:6281927-6281928
2012-10-07 16:08:00,646 - DEBUG - Taking top 8 variants by coverage in window 9:6282881-6282882
2012-10-07 16:08:00,796 - DEBUG - Taking top 8 variants by coverage in window 9:6284845-6284851
2012-10-07 16:08:00,822 - DEBUG - Taking top 8 variants by coverage in window 9:6284864-6284865
2012-10-07 16:08:01,522 - DEBUG - Taking top 8 variants by coverage in window 9:6295278-6295282
2012-10-07 16:08:01,590 - DEBUG - Taking top 8 variants by coverage in window 9:6295430-6295433
2012-10-07 16:08:01,633 - DEBUG - Taking top 8 variants by coverage in window 9:6295462-6295463
2012-10-07 16:08:01,985 - DEBUG - Taking top 8 variants by coverage in window 9:6298249-6298250
2012-10-07 16:08:02,040 - DEBUG - Taking top 8 variants by coverage in window 9:6298298-6298303
2012-10-07 16:08:02,570 - DEBUG - Taking top 8 variants by coverage in window 9:6302755-6302756
2012-10-07 16:08:03,003 - DEBUG - Taking top 8 variants by coverage in window 9:6306687-6306690
2012-10-07 16:08:03,226 - DEBUG - Taking top 8 variants by coverage in window 9:6308289-6308294
2012-10-07 16:08:03,709 - DEBUG - Taking top 8 variants by coverage in window 9:6314736-6314743
2012-10-07 16:08:04,558 - DEBUG - Taking top 8 variants by coverage in window 9:6324194-6324203
2012-10-07 16:08:04,928 - DEBUG - Taking top 8 variants by coverage in window 9:6326971-6326979
2012-10-07 16:08:05,994 - DEBUG - Taking top 8 variants by coverage in window 9:6329854-6329855
2012-10-07 16:08:06,226 - DEBUG - Taking top 8 variants by coverage in window 9:6331807-6331810
2012-10-07 16:08:06,267 - DEBUG - Taking top 8 variants by coverage in window 9:6331839-6331840
2012-10-07 16:08:07,120 - DEBUG - Taking top 8 variants by coverage in window 9:6339306-6339307
2012-10-07 16:08:07,137 - DEBUG - Taking top 8 variants by coverage in window 9:6339408-6339409
2012-10-07 16:08:07,232 - DEBUG - Taking top 8 variants by coverage in window 9:6339735-6339736
2012-10-07 16:08:07,585 - DEBUG - Taking top 8 variants by coverage in window 9:6343207-6343211
2012-10-07 16:08:08,846 - DEBUG - Taking top 8 variants by coverage in window 9:6359031-6359034
2012-10-07 16:08:09,479 - DEBUG - Taking top 8 variants by coverage in window 9:6363961-6363975
2012-10-07 16:08:11,280 - DEBUG - Taking top 8 variants by coverage in window 9:6382690-6382691
2012-10-07 16:08:12,630 - DEBUG - Taking top 8 variants by coverage in window 9:6401610-6401612
2012-10-07 16:08:12,754 - DEBUG - Taking top 8 variants by coverage in window 9:6402883-6402885
2012-10-07 16:08:14,711 - DEBUG - Taking top 8 variants by coverage in window 9:6429884-6429886
2012-10-07 16:08:14,915 - DEBUG - Taking top 8 variants by coverage in window 9:6431494-6431496
2012-10-07 16:08:16,786 - DEBUG - Taking top 8 variants by coverage in window 9:6454969-6454970
2012-10-07 16:08:16,821 - DEBUG - Taking top 8 variants by coverage in window 9:6454991-6454992
2012-10-07 16:08:17,489 - DEBUG - Taking top 8 variants by coverage in window 9:6461657-6461658
2012-10-07 16:08:17,570 - DEBUG - Taking top 8 variants by coverage in window 9:6468461-6468462
2012-10-07 16:08:19,925 - DEBUG - Taking top 8 variants by coverage in window 9:6496139-6496140
2012-10-07 16:08:20,350 - DEBUG - Taking top 8 variants by coverage in window 9:6500631-6500632
2012-10-07 16:08:22,206 - DEBUG - Taking top 8 variants by coverage in window 9:6517889-6517890
2012-10-07 16:08:22,300 - DEBUG - Taking top 8 variants by coverage in window 9:6518432-6518433
2012-10-07 16:08:22,375 - DEBUG - Taking top 8 variants by coverage in window 9:6518805-6518806
2012-10-07 16:08:22,386 - DEBUG - Taking top 8 variants by coverage in window 9:6518811-6518814
2012-10-07 16:08:22,605 - DEBUG - Taking top 8 variants by coverage in window 9:6520203-6520204
2012-10-07 16:08:22,998 - DEBUG - Taking top 8 variants by coverage in window 9:6523353-6523355
2012-10-07 16:08:23,125 - DEBUG - Taking top 8 variants by coverage in window 9:6523802-6523803
2012-10-07 16:08:23,490 - DEBUG - Taking top 8 variants by coverage in window 9:6527911-6527912
2012-10-07 16:08:24,444 - DEBUG - Taking top 8 variants by coverage in window 9:6537045-6537046
2012-10-07 16:08:24,459 - DEBUG - Taking top 8 variants by coverage in window 9:6537053-6537057
2012-10-07 16:08:24,625 - DEBUG - Taking top 8 variants by coverage in window 9:6538444-6538445
2012-10-07 16:08:24,797 - DEBUG - Taking top 8 variants by coverage in window 9:6540950-6540951
2012-10-07 16:08:24,935 - DEBUG - Taking top 8 variants by coverage in window 9:6542109-6542120
2012-10-07 16:08:26,718 - DEBUG - Taking top 8 variants by coverage in window 9:6559392-6559393
2012-10-07 16:08:26,768 - DEBUG - Taking top 8 variants by coverage in window 9:6559470-6559471
2012-10-07 16:08:28,110 - DEBUG - Taking top 8 variants by coverage in window 9:6573260-6573261
2012-10-07 16:08:28,902 - DEBUG - Taking top 8 variants by coverage in window 9:6581861-6581862
2012-10-07 16:08:28,922 - DEBUG - Taking top 8 variants by coverage in window 9:6581863-6581864
2012-10-07 16:08:29,441 - DEBUG - Taking top 8 variants by coverage in window 9:6586589-6586590
2012-10-07 16:08:31,500 - DEBUG - Taking top 8 variants by coverage in window 9:6603016-6603018
2012-10-07 16:08:32,297 - DEBUG - Taking top 8 variants by coverage in window 9:6609583-6609586
2012-10-07 16:08:33,493 - DEBUG - Taking top 8 variants by coverage in window 9:6620351-6620352
2012-10-07 16:08:33,804 - DEBUG - Taking top 8 variants by coverage in window 9:6623636-6623651
2012-10-07 16:08:33,883 - DEBUG - Taking top 8 variants by coverage in window 9:6624430-6624431
2012-10-07 16:08:34,053 - DEBUG - Taking top 8 variants by coverage in window 9:6625570-6625582
2012-10-07 16:08:36,110 - DEBUG - Taking top 8 variants by coverage in window 9:6657623-6657624
2012-10-07 16:08:36,199 - DEBUG - Taking top 8 variants by coverage in window 9:6664100-6664111
2012-10-07 16:08:36,971 - DEBUG - Taking top 8 variants by coverage in window 9:6669757-6669758
2012-10-07 16:08:37,539 - DEBUG - Taking top 8 variants by coverage in window 9:6680466-6680468
2012-10-07 16:08:38,293 - DEBUG - Taking top 8 variants by coverage in window 9:6690702-6690703
2012-10-07 16:08:39,679 - DEBUG - Taking top 8 variants by coverage in window 9:6718603-6718607
2012-10-07 16:08:40,363 - DEBUG - Taking top 8 variants by coverage in window 9:6725766-6725767
2012-10-07 16:08:40,920 - DEBUG - Taking top 8 variants by coverage in window 9:6732023-6732026
2012-10-07 16:08:41,108 - DEBUG - Taking top 8 variants by coverage in window 9:6734249-6734250
2012-10-07 16:08:43,865 - DEBUG - Taking top 8 variants by coverage in window 9:6785653-6785654
2012-10-07 16:08:43,877 - DEBUG - Taking top 8 variants by coverage in window 9:6785654-6785655
2012-10-07 16:08:46,005 - DEBUG - Taking top 8 variants by coverage in window 9:6813541-6813542
2012-10-07 16:08:46,428 - DEBUG - Taking top 8 variants by coverage in window 9:6817533-6817534
2012-10-07 16:08:46,459 - DEBUG - Taking top 8 variants by coverage in window 9:6817554-6817555
2012-10-07 16:08:46,732 - DEBUG - Taking top 8 variants by coverage in window 9:6821109-6821110
2012-10-07 16:08:46,746 - DEBUG - Taking top 8 variants by coverage in window 9:6821111-6821112
2012-10-07 16:08:46,942 - DEBUG - Taking top 8 variants by coverage in window 9:6821935-6821936
2012-10-07 16:08:47,069 - DEBUG - Taking top 8 variants by coverage in window 9:6822481-6822482
2012-10-07 16:08:47,445 - DEBUG - Taking top 8 variants by coverage in window 9:6825953-6825954
2012-10-07 16:08:47,697 - DEBUG - Taking top 8 variants by coverage in window 9:6827594-6827595
2012-10-07 16:08:47,948 - DEBUG - Taking top 8 variants by coverage in window 9:6829077-6829086
2012-10-07 16:08:47,989 - DEBUG - Taking top 8 variants by coverage in window 9:6829116-6829117
2012-10-07 16:08:48,998 - DEBUG - Taking top 8 variants by coverage in window 9:6836966-6836967
2012-10-07 16:08:49,066 - DEBUG - Taking top 8 variants by coverage in window 9:6837503-6837504
2012-10-07 16:08:49,072 - DEBUG - Taking top 8 variants by coverage in window 9:6837693-6837694
2012-10-07 16:08:49,317 - DEBUG - Taking top 8 variants by coverage in window 9:6839741-6839742
2012-10-07 16:08:50,482 - DEBUG - Taking top 8 variants by coverage in window 9:6849712-6849714
2012-10-07 16:08:51,035 - DEBUG - Taking top 8 variants by coverage in window 9:6853808-6853810
2012-10-07 16:08:52,075 - DEBUG - Taking top 8 variants by coverage in window 9:6860365-6860369
2012-10-07 16:08:52,451 - DEBUG - Taking top 8 variants by coverage in window 9:6863744-6863745
2012-10-07 16:08:53,259 - DEBUG - Taking top 8 variants by coverage in window 9:6871197-6871198
2012-10-07 16:08:53,416 - DEBUG - Taking top 8 variants by coverage in window 9:6873795-6873796
2012-10-07 16:08:53,425 - DEBUG - Taking top 8 variants by coverage in window 9:6873810-6873811
2012-10-07 16:08:53,471 - DEBUG - Taking top 8 variants by coverage in window 9:6873877-6873880
2012-10-07 16:08:55,140 - DEBUG - Taking top 8 variants by coverage in window 9:6889517-6889522
2012-10-07 16:08:56,020 - DEBUG - Taking top 8 variants by coverage in window 9:6896080-6896081
2012-10-07 16:08:56,864 - DEBUG - Taking top 8 variants by coverage in window 9:6906839-6906840
2012-10-07 16:08:58,738 - DEBUG - Taking top 8 variants by coverage in window 9:6923408-6923409
2012-10-07 16:08:58,843 - DEBUG - Taking top 8 variants by coverage in window 9:6924071-6924072
2012-10-07 16:08:59,330 - DEBUG - Taking top 8 variants by coverage in window 9:6930113-6930127
2012-10-07 16:08:59,866 - DEBUG - Taking top 8 variants by coverage in window 9:6939341-6939342
2012-10-07 16:09:02,102 - DEBUG - Taking top 8 variants by coverage in window 9:6972733-6972734
2012-10-07 16:09:03,100 - DEBUG - Taking top 8 variants by coverage in window 9:6991322-6991323
2012-10-07 16:09:04,457 - DEBUG - Read 86587 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 16:09:04,690 - DEBUG - Read 93718 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 16:09:04,943 - DEBUG - Read 110524 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 16:09:05,222 - DEBUG - Read 109942 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 16:09:05,485 - DEBUG - Read 103732 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 16:09:05,725 - DEBUG - Read 98999 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 16:09:05,975 - DEBUG - Read 104669 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 16:09:06,214 - DEBUG - Read 93533 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 16:09:06,435 - DEBUG - Read 88647 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 16:09:06,669 - DEBUG - Read 91173 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 16:09:06,922 - DEBUG - Read 101842 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 16:09:07,140 - DEBUG - Read 89205 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 16:09:07,369 - DEBUG - Read 90880 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 16:09:07,605 - DEBUG - Read 101243 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 16:09:07,863 - DEBUG - Read 109036 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 16:09:08,079 - DEBUG - Read 83399 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 16:09:08,323 - DEBUG - Read 105167 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 16:09:08,576 - DEBUG - Read 102075 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 16:09:08,784 - DEBUG - Read 84682 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 16:09:09,016 - DEBUG - Read 87642 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 16:09:09,106 - DEBUG - Detected 21471 variants in 86587 reads
2012-10-07 16:09:09,251 - DEBUG - Detected 31530 variants in 93718 reads
2012-10-07 16:09:09,437 - DEBUG - Detected 40008 variants in 110524 reads
2012-10-07 16:09:09,681 - DEBUG - Detected 47476 variants in 109942 reads
2012-10-07 16:09:09,931 - DEBUG - Detected 53335 variants in 103732 reads
2012-10-07 16:09:10,202 - DEBUG - Detected 59667 variants in 98999 reads
2012-10-07 16:09:10,513 - DEBUG - Detected 71920 variants in 104669 reads
2012-10-07 16:09:10,868 - DEBUG - Detected 77296 variants in 93533 reads
2012-10-07 16:09:11,242 - DEBUG - Detected 82371 variants in 88647 reads
2012-10-07 16:09:11,645 - DEBUG - Detected 86793 variants in 91173 reads
2012-10-07 16:09:12,075 - DEBUG - Detected 92147 variants in 101842 reads
2012-10-07 16:09:12,556 - DEBUG - Detected 95744 variants in 89205 reads
2012-10-07 16:09:13,009 - DEBUG - Detected 99528 variants in 90880 reads
2012-10-07 16:09:13,485 - DEBUG - Detected 103575 variants in 101243 reads
2012-10-07 16:09:13,994 - DEBUG - Detected 110542 variants in 109036 reads
2012-10-07 16:09:14,500 - DEBUG - Detected 114323 variants in 83399 reads
2012-10-07 16:09:15,054 - DEBUG - Detected 117828 variants in 105167 reads
2012-10-07 16:09:15,671 - DEBUG - Detected 122344 variants in 102075 reads
2012-10-07 16:09:16,241 - DEBUG - Detected 125967 variants in 84682 reads
2012-10-07 16:09:16,824 - DEBUG - Detected 129960 variants in 87642 reads
2012-10-07 16:09:17,816 - DEBUG - Taking top 8 variants by coverage in window 9:7003273-7003277
2012-10-07 16:09:18,835 - DEBUG - Taking top 8 variants by coverage in window 9:7024042-7024043
2012-10-07 16:09:18,849 - DEBUG - Taking top 8 variants by coverage in window 9:7024044-7024045
2012-10-07 16:09:19,204 - DEBUG - Taking top 8 variants by coverage in window 9:7029397-7029398
2012-10-07 16:09:20,292 - DEBUG - Taking top 8 variants by coverage in window 9:7048567-7048568
2012-10-07 16:09:20,908 - DEBUG - Taking top 8 variants by coverage in window 9:7061485-7061486
2012-10-07 16:09:21,261 - DEBUG - Taking top 8 variants by coverage in window 9:7074467-7074468
2012-10-07 16:09:21,300 - DEBUG - Taking top 8 variants by coverage in window 9:7074495-7074496
2012-10-07 16:09:22,730 - DEBUG - Taking top 8 variants by coverage in window 9:7106149-7106150
2012-10-07 16:09:23,523 - DEBUG - Taking top 8 variants by coverage in window 9:7132692-7132693
2012-10-07 16:09:24,024 - DEBUG - Taking top 8 variants by coverage in window 9:7140859-7140860
2012-10-07 16:09:24,220 - DEBUG - Taking top 8 variants by coverage in window 9:7143639-7143640
2012-10-07 16:09:24,243 - DEBUG - Taking top 8 variants by coverage in window 9:7143667-7143668
2012-10-07 16:09:24,780 - DEBUG - Taking top 8 variants by coverage in window 9:7152137-7152138
2012-10-07 16:09:25,904 - DEBUG - Taking top 8 variants by coverage in window 9:7171467-7171468
2012-10-07 16:09:26,145 - DEBUG - Taking top 8 variants by coverage in window 9:7174676-7174677
2012-10-07 16:09:27,199 - DEBUG - Taking top 8 variants by coverage in window 9:7200820-7200821
2012-10-07 16:09:27,436 - DEBUG - Taking top 8 variants by coverage in window 9:7204716-7204717
2012-10-07 16:09:28,792 - DEBUG - Taking top 8 variants by coverage in window 9:7234920-7234921
2012-10-07 16:09:28,801 - DEBUG - Taking top 8 variants by coverage in window 9:7234936-7234937
2012-10-07 16:09:29,224 - DEBUG - Taking top 8 variants by coverage in window 9:7241582-7241583
2012-10-07 16:09:29,525 - DEBUG - Taking top 8 variants by coverage in window 9:7245671-7245673
2012-10-07 16:09:29,882 - DEBUG - Taking top 8 variants by coverage in window 9:7254524-7254525
2012-10-07 16:09:30,144 - DEBUG - Taking top 8 variants by coverage in window 9:7259343-7259355
2012-10-07 16:09:30,199 - DEBUG - Taking top 8 variants by coverage in window 9:7259887-7259896
2012-10-07 16:09:30,676 - DEBUG - Taking top 8 variants by coverage in window 9:7267408-7267409
2012-10-07 16:09:30,813 - DEBUG - Taking top 8 variants by coverage in window 9:7271550-7271552
2012-10-07 16:09:31,340 - DEBUG - Taking top 8 variants by coverage in window 9:7280626-7280627
2012-10-07 16:09:32,062 - DEBUG - Taking top 8 variants by coverage in window 9:7301108-7301109
2012-10-07 16:09:32,855 - DEBUG - Taking top 8 variants by coverage in window 9:7314634-7314636
2012-10-07 16:09:32,938 - DEBUG - Taking top 8 variants by coverage in window 9:7314658-7314665
2012-10-07 16:09:33,099 - DEBUG - Taking top 8 variants by coverage in window 9:7315043-7315044
2012-10-07 16:09:33,500 - DEBUG - Taking top 8 variants by coverage in window 9:7319039-7319043
2012-10-07 16:09:33,995 - DEBUG - Taking top 8 variants by coverage in window 9:7325803-7325804
2012-10-07 16:09:34,021 - DEBUG - Taking top 8 variants by coverage in window 9:7325822-7325823
2012-10-07 16:09:34,167 - DEBUG - Taking top 8 variants by coverage in window 9:7327180-7327181
2012-10-07 16:09:34,253 - DEBUG - Taking top 8 variants by coverage in window 9:7329865-7329866
2012-10-07 16:09:34,702 - DEBUG - Taking top 8 variants by coverage in window 9:7339532-7339533
2012-10-07 16:09:35,119 - DEBUG - Taking top 8 variants by coverage in window 9:7344862-7344863
2012-10-07 16:09:35,160 - DEBUG - Taking top 8 variants by coverage in window 9:7345124-7345125
2012-10-07 16:09:35,474 - DEBUG - Taking top 8 variants by coverage in window 9:7353883-7353884
2012-10-07 16:09:35,507 - DEBUG - Taking top 8 variants by coverage in window 9:7353997-7353999
2012-10-07 16:09:39,131 - DEBUG - Taking top 8 variants by coverage in window 9:7443600-7443601
2012-10-07 16:09:39,438 - DEBUG - Taking top 8 variants by coverage in window 9:7452662-7452663
2012-10-07 16:09:40,409 - DEBUG - Taking top 8 variants by coverage in window 9:7462607-7462608
2012-10-07 16:09:41,190 - DEBUG - Taking top 8 variants by coverage in window 9:7473089-7473090
2012-10-07 16:09:42,532 - DEBUG - Taking top 8 variants by coverage in window 9:7505144-7505147
2012-10-07 16:09:42,539 - DEBUG - Taking top 8 variants by coverage in window 9:7505175-7505176
2012-10-07 16:09:43,693 - DEBUG - Taking top 8 variants by coverage in window 9:7519748-7519749
2012-10-07 16:09:43,749 - DEBUG - Taking top 8 variants by coverage in window 9:7519801-7519802
2012-10-07 16:09:43,830 - DEBUG - Taking top 8 variants by coverage in window 9:7520617-7520630
2012-10-07 16:09:43,900 - DEBUG - Taking top 8 variants by coverage in window 9:7520661-7520662
2012-10-07 16:09:43,973 - DEBUG - Taking top 8 variants by coverage in window 9:7520843-7520844
2012-10-07 16:09:44,250 - DEBUG - Taking top 8 variants by coverage in window 9:7528662-7528663
2012-10-07 16:09:44,530 - DEBUG - Taking top 8 variants by coverage in window 9:7533352-7533353
2012-10-07 16:09:45,154 - DEBUG - Taking top 8 variants by coverage in window 9:7543040-7543042
2012-10-07 16:09:45,504 - DEBUG - Taking top 8 variants by coverage in window 9:7548377-7548378
2012-10-07 16:09:46,573 - DEBUG - Taking top 8 variants by coverage in window 9:7563842-7563843
2012-10-07 16:09:47,880 - DEBUG - Taking top 8 variants by coverage in window 9:7593914-7593915
2012-10-07 16:09:48,218 - DEBUG - Taking top 8 variants by coverage in window 9:7596636-7596637
2012-10-07 16:09:48,630 - DEBUG - Taking top 8 variants by coverage in window 9:7602335-7602336
2012-10-07 16:09:48,857 - DEBUG - Taking top 8 variants by coverage in window 9:7604671-7604673
2012-10-07 16:09:48,894 - DEBUG - Taking top 8 variants by coverage in window 9:7604821-7604829
2012-10-07 16:09:48,902 - DEBUG - Taking top 8 variants by coverage in window 9:7604830-7604831
2012-10-07 16:09:48,919 - DEBUG - Taking top 8 variants by coverage in window 9:7604859-7604860
2012-10-07 16:09:48,948 - DEBUG - Taking top 8 variants by coverage in window 9:7605149-7605150
2012-10-07 16:09:50,757 - DEBUG - Taking top 8 variants by coverage in window 9:7634247-7634248
2012-10-07 16:09:51,457 - DEBUG - Taking top 8 variants by coverage in window 9:7645901-7645902
2012-10-07 16:09:52,903 - DEBUG - Taking top 8 variants by coverage in window 9:7659023-7659024
2012-10-07 16:09:52,950 - DEBUG - Taking top 8 variants by coverage in window 9:7659102-7659103
2012-10-07 16:09:53,106 - DEBUG - Taking top 8 variants by coverage in window 9:7660574-7660575
2012-10-07 16:09:53,374 - DEBUG - Taking top 8 variants by coverage in window 9:7662808-7662809
2012-10-07 16:09:54,378 - DEBUG - Taking top 8 variants by coverage in window 9:7672539-7672540
2012-10-07 16:09:54,405 - DEBUG - Taking top 8 variants by coverage in window 9:7672586-7672587
2012-10-07 16:09:54,437 - DEBUG - Taking top 8 variants by coverage in window 9:7672596-7672597
2012-10-07 16:09:55,028 - DEBUG - Taking top 8 variants by coverage in window 9:7682830-7682832
2012-10-07 16:09:55,524 - DEBUG - Taking top 8 variants by coverage in window 9:7687020-7687021
2012-10-07 16:09:56,161 - DEBUG - Taking top 8 variants by coverage in window 9:7693374-7693375
2012-10-07 16:09:56,244 - DEBUG - Taking top 8 variants by coverage in window 9:7694272-7694274
2012-10-07 16:09:56,289 - DEBUG - Taking top 8 variants by coverage in window 9:7694276-7694278
2012-10-07 16:09:57,261 - DEBUG - Taking top 8 variants by coverage in window 9:7706000-7706001
2012-10-07 16:09:57,346 - DEBUG - Taking top 8 variants by coverage in window 9:7706852-7706853
2012-10-07 16:09:57,894 - DEBUG - Taking top 8 variants by coverage in window 9:7712716-7712717
2012-10-07 16:09:59,089 - DEBUG - Taking top 8 variants by coverage in window 9:7723036-7723037
2012-10-07 16:09:59,549 - DEBUG - Taking top 8 variants by coverage in window 9:7728100-7728101
2012-10-07 16:10:00,576 - DEBUG - Taking top 8 variants by coverage in window 9:7746343-7746344
2012-10-07 16:10:01,031 - DEBUG - Taking top 8 variants by coverage in window 9:7751670-7751671
2012-10-07 16:10:01,168 - DEBUG - Taking top 8 variants by coverage in window 9:7752935-7752937
2012-10-07 16:10:01,621 - DEBUG - Taking top 8 variants by coverage in window 9:7755256-7755259
2012-10-07 16:10:02,227 - DEBUG - Taking top 8 variants by coverage in window 9:7755449-7755454
2012-10-07 16:10:03,725 - DEBUG - Taking top 8 variants by coverage in window 9:7769589-7769590
2012-10-07 16:10:04,024 - DEBUG - Taking top 8 variants by coverage in window 9:7771407-7771408
2012-10-07 16:10:04,081 - DEBUG - Taking top 8 variants by coverage in window 9:7771496-7771505
2012-10-07 16:10:05,425 - DEBUG - Taking top 8 variants by coverage in window 9:7788457-7788458
2012-10-07 16:10:06,547 - DEBUG - Taking top 8 variants by coverage in window 9:7798631-7798632
2012-10-07 16:10:06,661 - DEBUG - Taking top 8 variants by coverage in window 9:7798965-7798966
2012-10-07 16:10:06,767 - DEBUG - Taking top 8 variants by coverage in window 9:7805185-7805186
2012-10-07 16:10:07,982 - DEBUG - Taking top 8 variants by coverage in window 9:7815347-7815348
2012-10-07 16:10:08,173 - DEBUG - Taking top 8 variants by coverage in window 9:7816126-7816128
2012-10-07 16:10:08,557 - DEBUG - Taking top 8 variants by coverage in window 9:7816167-7816168
2012-10-07 16:10:08,652 - DEBUG - Taking top 8 variants by coverage in window 9:7816739-7816740
2012-10-07 16:10:08,778 - DEBUG - Taking top 8 variants by coverage in window 9:7817438-7817454
2012-10-07 16:10:09,341 - DEBUG - Taking top 8 variants by coverage in window 9:7822027-7822028
2012-10-07 16:10:09,987 - DEBUG - Taking top 8 variants by coverage in window 9:7830081-7830082
2012-10-07 16:10:11,435 - DEBUG - Taking top 8 variants by coverage in window 9:7846270-7846271
2012-10-07 16:10:11,454 - DEBUG - Taking top 8 variants by coverage in window 9:7846284-7846285
2012-10-07 16:10:12,300 - DEBUG - Taking top 8 variants by coverage in window 9:7850217-7850227
2012-10-07 16:10:12,352 - DEBUG - Taking top 8 variants by coverage in window 9:7850256-7850262
2012-10-07 16:10:13,267 - DEBUG - Taking top 8 variants by coverage in window 9:7857172-7857173
2012-10-07 16:10:13,425 - DEBUG - Taking top 8 variants by coverage in window 9:7859323-7859328
2012-10-07 16:10:13,587 - DEBUG - Taking top 8 variants by coverage in window 9:7861650-7861651
2012-10-07 16:10:14,576 - DEBUG - Taking top 8 variants by coverage in window 9:7869855-7869856
2012-10-07 16:10:14,903 - DEBUG - Taking top 8 variants by coverage in window 9:7874707-7874708
2012-10-07 16:10:15,005 - DEBUG - Taking top 8 variants by coverage in window 9:7875302-7875303
2012-10-07 16:10:15,771 - DEBUG - Taking top 8 variants by coverage in window 9:7881414-7881415
2012-10-07 16:10:16,671 - DEBUG - Taking top 8 variants by coverage in window 9:7889802-7889803
2012-10-07 16:10:16,894 - DEBUG - Taking top 8 variants by coverage in window 9:7891528-7891529
2012-10-07 16:10:17,114 - DEBUG - Taking top 8 variants by coverage in window 9:7892750-7892751
2012-10-07 16:10:17,140 - DEBUG - Taking top 8 variants by coverage in window 9:7892955-7892956
2012-10-07 16:10:17,361 - DEBUG - Taking top 8 variants by coverage in window 9:7894816-7894817
2012-10-07 16:10:18,076 - DEBUG - Taking top 8 variants by coverage in window 9:7900356-7900357
2012-10-07 16:10:19,275 - DEBUG - Taking top 8 variants by coverage in window 9:7913968-7913971
2012-10-07 16:10:19,333 - DEBUG - Taking top 8 variants by coverage in window 9:7914074-7914075
2012-10-07 16:10:20,683 - DEBUG - Taking top 8 variants by coverage in window 9:7936569-7936570
2012-10-07 16:10:20,714 - DEBUG - Taking top 8 variants by coverage in window 9:7936629-7936633
2012-10-07 16:10:21,588 - DEBUG - Taking top 8 variants by coverage in window 9:7946423-7946424
2012-10-07 16:10:22,951 - DEBUG - Taking top 8 variants by coverage in window 9:7962287-7962288
2012-10-07 16:10:22,968 - DEBUG - Taking top 8 variants by coverage in window 9:7962403-7962404
2012-10-07 16:10:23,495 - DEBUG - Taking top 8 variants by coverage in window 9:7971115-7971137
2012-10-07 16:10:23,529 - DEBUG - Taking top 8 variants by coverage in window 9:7971176-7971177
2012-10-07 16:10:23,648 - DEBUG - Taking top 8 variants by coverage in window 9:7972309-7972314
2012-10-07 16:10:23,717 - DEBUG - Taking top 8 variants by coverage in window 9:7972327-7972328
2012-10-07 16:10:23,746 - DEBUG - Taking top 8 variants by coverage in window 9:7972332-7972334
2012-10-07 16:10:24,017 - DEBUG - Taking top 8 variants by coverage in window 9:7973784-7973785
2012-10-07 16:10:24,476 - DEBUG - Taking top 8 variants by coverage in window 9:7977169-7977170
2012-10-07 16:10:24,642 - DEBUG - Taking top 8 variants by coverage in window 9:7977834-7977835
2012-10-07 16:10:24,662 - DEBUG - Taking top 8 variants by coverage in window 9:7977922-7977923
2012-10-07 16:10:25,314 - DEBUG - Taking top 8 variants by coverage in window 9:7990933-7990934
2012-10-07 16:10:25,335 - DEBUG - Taking top 8 variants by coverage in window 9:7990940-7990941
2012-10-07 16:10:25,674 - DEBUG - Taking top 8 variants by coverage in window 9:7996525-7996526
2012-10-07 16:10:25,768 - DEBUG - Taking top 8 variants by coverage in window 9:7996672-7996674
2012-10-07 16:10:25,856 - DEBUG - Taking top 8 variants by coverage in window 9:7997414-7997415
2012-10-07 16:10:26,034 - DEBUG - Taking top 8 variants by coverage in window 9:7998898-7998899
2012-10-07 16:10:27,179 - DEBUG - Read 83351 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 16:10:27,406 - DEBUG - Read 89857 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 16:10:27,653 - DEBUG - Read 104941 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 16:10:28,021 - DEBUG - Read 103897 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 16:10:28,284 - DEBUG - Read 101230 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 16:10:28,519 - DEBUG - Read 95735 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 16:10:28,771 - DEBUG - Read 102005 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 16:10:29,006 - DEBUG - Read 88971 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 16:10:29,226 - DEBUG - Read 85574 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 16:10:29,456 - DEBUG - Read 87791 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 16:10:29,702 - DEBUG - Read 97616 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 16:10:29,918 - DEBUG - Read 85700 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 16:10:30,142 - DEBUG - Read 86796 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 16:10:30,371 - DEBUG - Read 96219 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 16:10:30,621 - DEBUG - Read 102213 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 16:10:30,837 - DEBUG - Read 81339 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 16:10:31,073 - DEBUG - Read 100224 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 16:10:31,321 - DEBUG - Read 97524 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 16:10:31,524 - DEBUG - Read 79761 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 16:10:31,769 - DEBUG - Read 83623 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 16:10:31,863 - DEBUG - Detected 20198 variants in 83351 reads
2012-10-07 16:10:32,014 - DEBUG - Detected 26865 variants in 89857 reads
2012-10-07 16:10:32,207 - DEBUG - Detected 33414 variants in 104941 reads
2012-10-07 16:10:32,443 - DEBUG - Detected 39309 variants in 103897 reads
2012-10-07 16:10:32,683 - DEBUG - Detected 44766 variants in 101230 reads
2012-10-07 16:10:32,937 - DEBUG - Detected 50178 variants in 95735 reads
2012-10-07 16:10:33,234 - DEBUG - Detected 61723 variants in 102005 reads
2012-10-07 16:10:33,571 - DEBUG - Detected 66362 variants in 88971 reads
2012-10-07 16:10:33,926 - DEBUG - Detected 73063 variants in 85574 reads
2012-10-07 16:10:34,311 - DEBUG - Detected 80300 variants in 87791 reads
2012-10-07 16:10:34,736 - DEBUG - Detected 84411 variants in 97616 reads
2012-10-07 16:10:35,216 - DEBUG - Detected 87948 variants in 85700 reads
2012-10-07 16:10:35,664 - DEBUG - Detected 91378 variants in 86796 reads
2012-10-07 16:10:36,135 - DEBUG - Detected 95279 variants in 96219 reads
2012-10-07 16:10:36,639 - DEBUG - Detected 102201 variants in 102213 reads
2012-10-07 16:10:37,155 - DEBUG - Detected 105906 variants in 81339 reads
2012-10-07 16:10:37,698 - DEBUG - Detected 109211 variants in 100224 reads
2012-10-07 16:10:38,262 - DEBUG - Detected 114757 variants in 97524 reads
2012-10-07 16:10:38,890 - DEBUG - Detected 118577 variants in 79761 reads
2012-10-07 16:10:39,483 - DEBUG - Detected 122265 variants in 83623 reads
2012-10-07 16:10:40,514 - DEBUG - Taking top 8 variants by coverage in window 9:8001430-8001435
2012-10-07 16:10:40,661 - DEBUG - Taking top 8 variants by coverage in window 9:8001455-8001456
2012-10-07 16:10:41,351 - DEBUG - Taking top 8 variants by coverage in window 9:8009600-8009601
2012-10-07 16:10:41,906 - DEBUG - Taking top 8 variants by coverage in window 9:8018095-8018096
2012-10-07 16:10:42,223 - DEBUG - Taking top 8 variants by coverage in window 9:8023722-8023723
2012-10-07 16:10:42,284 - DEBUG - Taking top 8 variants by coverage in window 9:8024474-8024475
2012-10-07 16:10:42,314 - DEBUG - Taking top 8 variants by coverage in window 9:8024504-8024505
2012-10-07 16:10:42,589 - DEBUG - Taking top 8 variants by coverage in window 9:8028269-8028271
2012-10-07 16:10:42,689 - DEBUG - Taking top 8 variants by coverage in window 9:8028886-8028887
2012-10-07 16:10:42,787 - DEBUG - Taking top 8 variants by coverage in window 9:8030672-8030677
2012-10-07 16:10:43,050 - DEBUG - Taking top 8 variants by coverage in window 9:8035351-8035355
2012-10-07 16:10:43,079 - DEBUG - Taking top 8 variants by coverage in window 9:8035375-8035376
2012-10-07 16:10:43,099 - DEBUG - Taking top 8 variants by coverage in window 9:8035381-8035382
2012-10-07 16:10:43,174 - DEBUG - Taking top 8 variants by coverage in window 9:8036202-8036203
2012-10-07 16:10:43,293 - DEBUG - Taking top 8 variants by coverage in window 9:8037898-8037907
2012-10-07 16:10:44,054 - DEBUG - Taking top 8 variants by coverage in window 9:8045117-8045118
2012-10-07 16:10:44,205 - DEBUG - Taking top 8 variants by coverage in window 9:8048216-8048218
2012-10-07 16:10:44,249 - DEBUG - Taking top 8 variants by coverage in window 9:8054638-8054648
2012-10-07 16:10:44,582 - DEBUG - Taking top 8 variants by coverage in window 9:8057147-8057148
2012-10-07 16:10:44,593 - DEBUG - Taking top 8 variants by coverage in window 9:8057148-8057149
2012-10-07 16:10:45,104 - DEBUG - Taking top 8 variants by coverage in window 9:8063513-8063514
2012-10-07 16:10:45,222 - DEBUG - Taking top 8 variants by coverage in window 9:8068093-8068094
2012-10-07 16:10:45,372 - DEBUG - Taking top 8 variants by coverage in window 9:8069433-8069434
2012-10-07 16:10:45,401 - DEBUG - Taking top 8 variants by coverage in window 9:8069442-8069445
2012-10-07 16:10:46,688 - DEBUG - Taking top 8 variants by coverage in window 9:8085151-8085152
2012-10-07 16:10:46,854 - DEBUG - Taking top 8 variants by coverage in window 9:8087944-8087945
2012-10-07 16:10:47,981 - DEBUG - Taking top 8 variants by coverage in window 9:8122044-8122046
2012-10-07 16:10:48,290 - DEBUG - Taking top 8 variants by coverage in window 9:8125826-8125827
2012-10-07 16:10:49,157 - DEBUG - Taking top 8 variants by coverage in window 9:8141718-8141719
2012-10-07 16:10:52,066 - DEBUG - Taking top 8 variants by coverage in window 9:8182752-8182753
2012-10-07 16:10:52,089 - DEBUG - Taking top 8 variants by coverage in window 9:8182761-8182762
2012-10-07 16:10:52,161 - DEBUG - Taking top 8 variants by coverage in window 9:8182814-8182815
2012-10-07 16:10:52,232 - DEBUG - Taking top 8 variants by coverage in window 9:8183296-8183297
2012-10-07 16:10:52,594 - DEBUG - Taking top 8 variants by coverage in window 9:8187201-8187202
2012-10-07 16:10:54,084 - DEBUG - Taking top 8 variants by coverage in window 9:8211495-8211497
2012-10-07 16:10:54,518 - DEBUG - Taking top 8 variants by coverage in window 9:8216955-8216956
2012-10-07 16:10:54,530 - DEBUG - Taking top 8 variants by coverage in window 9:8216956-8216957
2012-10-07 16:10:55,653 - DEBUG - Taking top 8 variants by coverage in window 9:8228314-8228315
2012-10-07 16:10:56,810 - DEBUG - Taking top 8 variants by coverage in window 9:8253953-8253954
2012-10-07 16:10:57,094 - DEBUG - Taking top 8 variants by coverage in window 9:8260345-8260346
2012-10-07 16:10:57,113 - DEBUG - Taking top 8 variants by coverage in window 9:8260364-8260365
2012-10-07 16:10:57,709 - DEBUG - Taking top 8 variants by coverage in window 9:8267234-8267235
2012-10-07 16:10:58,272 - DEBUG - Taking top 8 variants by coverage in window 9:8274356-8274357
2012-10-07 16:10:58,474 - DEBUG - Taking top 8 variants by coverage in window 9:8276090-8276091
2012-10-07 16:10:59,394 - DEBUG - Taking top 8 variants by coverage in window 9:8299210-8299213
2012-10-07 16:11:00,455 - DEBUG - Taking top 8 variants by coverage in window 9:8321299-8321300
2012-10-07 16:11:00,474 - DEBUG - Taking top 8 variants by coverage in window 9:8321302-8321303
2012-10-07 16:11:00,491 - DEBUG - Taking top 8 variants by coverage in window 9:8321307-8321308
2012-10-07 16:11:00,795 - DEBUG - Taking top 8 variants by coverage in window 9:8324422-8324423
2012-10-07 16:11:01,059 - DEBUG - Taking top 8 variants by coverage in window 9:8326335-8326337
2012-10-07 16:11:01,102 - DEBUG - Taking top 8 variants by coverage in window 9:8326442-8326443
2012-10-07 16:11:01,391 - DEBUG - Taking top 8 variants by coverage in window 9:8331760-8331761
2012-10-07 16:11:01,623 - DEBUG - Taking top 8 variants by coverage in window 9:8335363-8335364
2012-10-07 16:11:03,715 - DEBUG - Taking top 8 variants by coverage in window 9:8365194-8365196
2012-10-07 16:11:05,901 - DEBUG - Taking top 8 variants by coverage in window 9:8399691-8399692
2012-10-07 16:11:06,347 - DEBUG - Taking top 8 variants by coverage in window 9:8403941-8403942
2012-10-07 16:11:08,206 - DEBUG - Taking top 8 variants by coverage in window 9:8434732-8434733
2012-10-07 16:11:08,600 - DEBUG - Taking top 8 variants by coverage in window 9:8442594-8442595
2012-10-07 16:11:08,838 - DEBUG - Taking top 8 variants by coverage in window 9:8446632-8446633
2012-10-07 16:11:09,550 - DEBUG - Taking top 8 variants by coverage in window 9:8458294-8458295
2012-10-07 16:11:09,579 - DEBUG - Taking top 8 variants by coverage in window 9:8458325-8458327
2012-10-07 16:11:09,646 - DEBUG - Taking top 8 variants by coverage in window 9:8458471-8458473
2012-10-07 16:11:09,702 - DEBUG - Taking top 8 variants by coverage in window 9:8458759-8458760
2012-10-07 16:11:09,723 - DEBUG - Taking top 8 variants by coverage in window 9:8458783-8458784
2012-10-07 16:11:10,409 - DEBUG - Taking top 8 variants by coverage in window 9:8474488-8474489
2012-10-07 16:11:10,552 - DEBUG - Taking top 8 variants by coverage in window 9:8475465-8475466
2012-10-07 16:11:11,154 - DEBUG - Taking top 8 variants by coverage in window 9:8488446-8488447
2012-10-07 16:11:11,201 - DEBUG - Taking top 8 variants by coverage in window 9:8489297-8489302
2012-10-07 16:11:11,463 - DEBUG - Taking top 8 variants by coverage in window 9:8492306-8492307
2012-10-07 16:11:11,488 - DEBUG - Taking top 8 variants by coverage in window 9:8492319-8492320
2012-10-07 16:11:11,577 - DEBUG - Taking top 8 variants by coverage in window 9:8493035-8493036
2012-10-07 16:11:14,251 - DEBUG - Taking top 8 variants by coverage in window 9:8542414-8542415
2012-10-07 16:11:14,332 - DEBUG - Taking top 8 variants by coverage in window 9:8543185-8543186
2012-10-07 16:11:15,164 - DEBUG - Taking top 8 variants by coverage in window 9:8566342-8566344
2012-10-07 16:11:15,277 - DEBUG - Taking top 8 variants by coverage in window 9:8566719-8566720
2012-10-07 16:11:15,356 - DEBUG - Taking top 8 variants by coverage in window 9:8566775-8566776
2012-10-07 16:11:17,464 - DEBUG - Taking top 8 variants by coverage in window 9:8594408-8594427
2012-10-07 16:11:19,388 - DEBUG - Taking top 8 variants by coverage in window 9:8628094-8628095
2012-10-07 16:11:19,444 - DEBUG - Taking top 8 variants by coverage in window 9:8628269-8628270
2012-10-07 16:11:19,872 - DEBUG - Taking top 8 variants by coverage in window 9:8637860-8637861
2012-10-07 16:11:19,956 - DEBUG - Taking top 8 variants by coverage in window 9:8637993-8637994
2012-10-07 16:11:21,787 - DEBUG - Taking top 8 variants by coverage in window 9:8690070-8690071
2012-10-07 16:11:21,968 - DEBUG - Taking top 8 variants by coverage in window 9:8691619-8691623
2012-10-07 16:11:22,230 - DEBUG - Taking top 8 variants by coverage in window 9:8692921-8692922
2012-10-07 16:11:22,401 - DEBUG - Taking top 8 variants by coverage in window 9:8695083-8695084
2012-10-07 16:11:23,583 - DEBUG - Taking top 8 variants by coverage in window 9:8709610-8709615
2012-10-07 16:11:24,263 - DEBUG - Taking top 8 variants by coverage in window 9:8725702-8725703
2012-10-07 16:11:24,393 - DEBUG - Taking top 8 variants by coverage in window 9:8726319-8726320
2012-10-07 16:11:24,416 - DEBUG - Taking top 8 variants by coverage in window 9:8726335-8726336
2012-10-07 16:11:24,435 - DEBUG - Taking top 8 variants by coverage in window 9:8726344-8726345
2012-10-07 16:11:24,684 - DEBUG - Taking top 8 variants by coverage in window 9:8727074-8727080
2012-10-07 16:11:24,727 - DEBUG - Taking top 8 variants by coverage in window 9:8727108-8727109
2012-10-07 16:11:24,807 - DEBUG - Taking top 8 variants by coverage in window 9:8728141-8728142
2012-10-07 16:11:25,204 - DEBUG - Taking top 8 variants by coverage in window 9:8735077-8735082
2012-10-07 16:11:25,788 - DEBUG - Taking top 8 variants by coverage in window 9:8751500-8751501
2012-10-07 16:11:26,588 - DEBUG - Taking top 8 variants by coverage in window 9:8767880-8767882
2012-10-07 16:11:26,603 - DEBUG - Taking top 8 variants by coverage in window 9:8768008-8768009
2012-10-07 16:11:28,604 - DEBUG - Taking top 8 variants by coverage in window 9:8809083-8809084
2012-10-07 16:11:28,813 - DEBUG - Taking top 8 variants by coverage in window 9:8810154-8810155
2012-10-07 16:11:29,056 - DEBUG - Taking top 8 variants by coverage in window 9:8813296-8813297
2012-10-07 16:11:29,386 - DEBUG - Taking top 8 variants by coverage in window 9:8820588-8820589
2012-10-07 16:11:29,778 - DEBUG - Taking top 8 variants by coverage in window 9:8826149-8826150
2012-10-07 16:11:30,209 - DEBUG - Taking top 8 variants by coverage in window 9:8833300-8833301
2012-10-07 16:11:30,331 - DEBUG - Taking top 8 variants by coverage in window 9:8835804-8835805
2012-10-07 16:11:30,356 - DEBUG - Taking top 8 variants by coverage in window 9:8835825-8835826
2012-10-07 16:11:30,451 - DEBUG - Taking top 8 variants by coverage in window 9:8836923-8836924
2012-10-07 16:11:30,461 - DEBUG - Taking top 8 variants by coverage in window 9:8836924-8836925
2012-10-07 16:11:30,643 - DEBUG - Taking top 8 variants by coverage in window 9:8839329-8839330
2012-10-07 16:11:30,654 - DEBUG - Taking top 8 variants by coverage in window 9:8839330-8839333
2012-10-07 16:11:30,723 - DEBUG - Taking top 8 variants by coverage in window 9:8839459-8839460
2012-10-07 16:11:30,747 - DEBUG - Taking top 8 variants by coverage in window 9:8839624-8839625
2012-10-07 16:11:30,819 - DEBUG - Taking top 8 variants by coverage in window 9:8840055-8840056
2012-10-07 16:11:32,284 - DEBUG - Taking top 8 variants by coverage in window 9:8854231-8854234
2012-10-07 16:11:32,769 - DEBUG - Taking top 8 variants by coverage in window 9:8858768-8858769
2012-10-07 16:11:33,041 - DEBUG - Taking top 8 variants by coverage in window 9:8866748-8866749
2012-10-07 16:11:33,589 - DEBUG - Taking top 8 variants by coverage in window 9:8876623-8876624
2012-10-07 16:11:33,946 - DEBUG - Taking top 8 variants by coverage in window 9:8883767-8883768
2012-10-07 16:11:34,538 - DEBUG - Taking top 8 variants by coverage in window 9:8893449-8893450
2012-10-07 16:11:34,728 - DEBUG - Taking top 8 variants by coverage in window 9:8896086-8896087
2012-10-07 16:11:35,361 - DEBUG - Taking top 8 variants by coverage in window 9:8905518-8905519
2012-10-07 16:11:35,510 - DEBUG - Taking top 8 variants by coverage in window 9:8906738-8906740
2012-10-07 16:11:36,219 - DEBUG - Taking top 8 variants by coverage in window 9:8914772-8914782
2012-10-07 16:11:36,318 - DEBUG - Taking top 8 variants by coverage in window 9:8914814-8914815
2012-10-07 16:11:37,051 - DEBUG - Taking top 8 variants by coverage in window 9:8920420-8920421
2012-10-07 16:11:38,053 - DEBUG - Taking top 8 variants by coverage in window 9:8932904-8932905
2012-10-07 16:11:38,833 - DEBUG - Taking top 8 variants by coverage in window 9:8946022-8946024
2012-10-07 16:11:39,423 - DEBUG - Taking top 8 variants by coverage in window 9:8954183-8954184
2012-10-07 16:11:39,978 - DEBUG - Taking top 8 variants by coverage in window 9:8960992-8960993
2012-10-07 16:11:41,206 - DEBUG - Taking top 8 variants by coverage in window 9:8980375-8980376
2012-10-07 16:11:41,224 - DEBUG - Taking top 8 variants by coverage in window 9:8980386-8980387
2012-10-07 16:11:41,342 - DEBUG - Taking top 8 variants by coverage in window 9:8981288-8981289
2012-10-07 16:11:43,115 - DEBUG - Read 84999 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 16:11:43,340 - DEBUG - Read 92111 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 16:11:43,588 - DEBUG - Read 107994 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 16:11:43,855 - DEBUG - Read 106918 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 16:11:44,116 - DEBUG - Read 104150 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 16:11:44,350 - DEBUG - Read 98147 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 16:11:44,596 - DEBUG - Read 103863 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 16:11:44,828 - DEBUG - Read 91431 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 16:11:45,047 - DEBUG - Read 87961 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 16:11:45,277 - DEBUG - Read 92137 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 16:11:45,518 - DEBUG - Read 99422 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 16:11:45,729 - DEBUG - Read 88117 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 16:11:45,949 - DEBUG - Read 88265 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 16:11:46,175 - DEBUG - Read 98333 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 16:11:46,446 - DEBUG - Read 106931 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 16:11:46,655 - DEBUG - Read 82517 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 16:11:46,891 - DEBUG - Read 102310 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 16:11:47,135 - DEBUG - Read 100836 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 16:11:47,331 - DEBUG - Read 81163 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 16:11:47,597 - DEBUG - Read 86443 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 16:11:47,699 - DEBUG - Detected 24833 variants in 84999 reads
2012-10-07 16:11:47,868 - DEBUG - Detected 33041 variants in 92111 reads
2012-10-07 16:11:48,083 - DEBUG - Detected 40997 variants in 107994 reads
2012-10-07 16:11:48,327 - DEBUG - Detected 47883 variants in 106918 reads
2012-10-07 16:11:48,616 - DEBUG - Detected 53628 variants in 104150 reads
2012-10-07 16:11:48,900 - DEBUG - Detected 60420 variants in 98147 reads
2012-10-07 16:11:49,230 - DEBUG - Detected 72591 variants in 103863 reads
2012-10-07 16:11:49,598 - DEBUG - Detected 77092 variants in 91431 reads
2012-10-07 16:11:49,981 - DEBUG - Detected 83166 variants in 87961 reads
2012-10-07 16:11:50,398 - DEBUG - Detected 87859 variants in 92137 reads
2012-10-07 16:11:50,834 - DEBUG - Detected 92533 variants in 99422 reads
2012-10-07 16:11:51,314 - DEBUG - Detected 96095 variants in 88117 reads
2012-10-07 16:11:51,777 - DEBUG - Detected 99615 variants in 88265 reads
2012-10-07 16:11:52,266 - DEBUG - Detected 103294 variants in 98333 reads
2012-10-07 16:11:52,781 - DEBUG - Detected 109485 variants in 106931 reads
2012-10-07 16:11:53,294 - DEBUG - Detected 113290 variants in 82517 reads
2012-10-07 16:11:53,854 - DEBUG - Detected 116711 variants in 102310 reads
2012-10-07 16:11:54,464 - DEBUG - Detected 120706 variants in 100836 reads
2012-10-07 16:11:55,028 - DEBUG - Detected 124434 variants in 81163 reads
2012-10-07 16:11:55,606 - DEBUG - Detected 128451 variants in 86443 reads
2012-10-07 16:11:56,455 - DEBUG - Taking top 8 variants by coverage in window 9:9000216-9000217
2012-10-07 16:11:57,297 - DEBUG - Taking top 8 variants by coverage in window 9:9012779-9012780
2012-10-07 16:11:57,345 - DEBUG - Taking top 8 variants by coverage in window 9:9013593-9013594
2012-10-07 16:11:57,371 - DEBUG - Taking top 8 variants by coverage in window 9:9013620-9013621
2012-10-07 16:11:57,385 - DEBUG - Taking top 8 variants by coverage in window 9:9013623-9013624
2012-10-07 16:11:57,686 - DEBUG - Taking top 8 variants by coverage in window 9:9016810-9016811
2012-10-07 16:11:57,765 - DEBUG - Taking top 8 variants by coverage in window 9:9017625-9017626
2012-10-07 16:11:57,816 - DEBUG - Taking top 8 variants by coverage in window 9:9018145-9018146
2012-10-07 16:11:57,999 - DEBUG - Taking top 8 variants by coverage in window 9:9019513-9019514
2012-10-07 16:11:58,022 - DEBUG - Taking top 8 variants by coverage in window 9:9019525-9019526
2012-10-07 16:11:58,236 - DEBUG - Taking top 8 variants by coverage in window 9:9022166-9022167
2012-10-07 16:11:58,581 - DEBUG - Taking top 8 variants by coverage in window 9:9025313-9025314
2012-10-07 16:11:58,621 - DEBUG - Taking top 8 variants by coverage in window 9:9025780-9025781
2012-10-07 16:11:58,763 - DEBUG - Taking top 8 variants by coverage in window 9:9028316-9028319
2012-10-07 16:11:58,793 - DEBUG - Taking top 8 variants by coverage in window 9:9028331-9028333
2012-10-07 16:11:59,432 - DEBUG - Taking top 8 variants by coverage in window 9:9035651-9035652
2012-10-07 16:11:59,545 - DEBUG - Taking top 8 variants by coverage in window 9:9035702-9035703
2012-10-07 16:11:59,568 - DEBUG - Taking top 8 variants by coverage in window 9:9035703-9035704
2012-10-07 16:11:59,633 - DEBUG - Taking top 8 variants by coverage in window 9:9035708-9035710
2012-10-07 16:11:59,670 - DEBUG - Taking top 8 variants by coverage in window 9:9035711-9035716
2012-10-07 16:12:00,223 - DEBUG - Taking top 8 variants by coverage in window 9:9041592-9041594
2012-10-07 16:12:00,284 - DEBUG - Taking top 8 variants by coverage in window 9:9041682-9041684
2012-10-07 16:12:00,293 - DEBUG - Taking top 8 variants by coverage in window 9:9041706-9041707
2012-10-07 16:12:00,324 - DEBUG - Taking top 8 variants by coverage in window 9:9042458-9042459
2012-10-07 16:12:00,537 - DEBUG - Taking top 8 variants by coverage in window 9:9043561-9043562
2012-10-07 16:12:00,674 - DEBUG - Taking top 8 variants by coverage in window 9:9044777-9044778
2012-10-07 16:12:01,313 - DEBUG - Taking top 8 variants by coverage in window 9:9054187-9054188
2012-10-07 16:12:01,640 - DEBUG - Taking top 8 variants by coverage in window 9:9062385-9062386
2012-10-07 16:12:03,068 - DEBUG - Taking top 8 variants by coverage in window 9:9083538-9083539
2012-10-07 16:12:03,680 - DEBUG - Taking top 8 variants by coverage in window 9:9089700-9089701
2012-10-07 16:12:03,779 - DEBUG - Taking top 8 variants by coverage in window 9:9090018-9090023
2012-10-07 16:12:03,954 - DEBUG - Taking top 8 variants by coverage in window 9:9091070-9091071
2012-10-07 16:12:04,356 - DEBUG - Taking top 8 variants by coverage in window 9:9096249-9096250
2012-10-07 16:12:04,563 - DEBUG - Taking top 8 variants by coverage in window 9:9097488-9097489
2012-10-07 16:12:05,358 - DEBUG - Taking top 8 variants by coverage in window 9:9109801-9109808
2012-10-07 16:12:05,974 - DEBUG - Taking top 8 variants by coverage in window 9:9116875-9116876
2012-10-07 16:12:05,982 - DEBUG - Taking top 8 variants by coverage in window 9:9116877-9116878
2012-10-07 16:12:06,172 - DEBUG - Taking top 8 variants by coverage in window 9:9120229-9120230
2012-10-07 16:12:07,279 - DEBUG - Taking top 8 variants by coverage in window 9:9141178-9141179
2012-10-07 16:12:07,293 - DEBUG - Taking top 8 variants by coverage in window 9:9141190-9141191
2012-10-07 16:12:07,918 - DEBUG - Taking top 8 variants by coverage in window 9:9152540-9152541
2012-10-07 16:12:08,120 - DEBUG - Taking top 8 variants by coverage in window 9:9154969-9154970
2012-10-07 16:12:08,146 - DEBUG - Taking top 8 variants by coverage in window 9:9154997-9154998
2012-10-07 16:12:08,211 - DEBUG - Taking top 8 variants by coverage in window 9:9155522-9155523
2012-10-07 16:12:08,266 - DEBUG - Taking top 8 variants by coverage in window 9:9155641-9155645
2012-10-07 16:12:08,371 - DEBUG - Taking top 8 variants by coverage in window 9:9155697-9155698
2012-10-07 16:12:08,437 - DEBUG - Taking top 8 variants by coverage in window 9:9156468-9156469
2012-10-07 16:12:08,531 - DEBUG - Taking top 8 variants by coverage in window 9:9156607-9156610
2012-10-07 16:12:08,661 - DEBUG - Taking top 8 variants by coverage in window 9:9157605-9157606
2012-10-07 16:12:08,698 - DEBUG - Taking top 8 variants by coverage in window 9:9157673-9157674
2012-10-07 16:12:08,889 - DEBUG - Taking top 8 variants by coverage in window 9:9160002-9160018
2012-10-07 16:12:09,787 - DEBUG - Taking top 8 variants by coverage in window 9:9168880-9168881
2012-10-07 16:12:10,587 - DEBUG - Taking top 8 variants by coverage in window 9:9178640-9178641
2012-10-07 16:12:10,672 - DEBUG - Taking top 8 variants by coverage in window 9:9178736-9178737
2012-10-07 16:12:11,430 - DEBUG - Taking top 8 variants by coverage in window 9:9186082-9186084
2012-10-07 16:12:11,491 - DEBUG - Taking top 8 variants by coverage in window 9:9186551-9186552
2012-10-07 16:12:12,523 - DEBUG - Taking top 8 variants by coverage in window 9:9200368-9200369
2012-10-07 16:12:13,958 - DEBUG - Taking top 8 variants by coverage in window 9:9222112-9222113
2012-10-07 16:12:14,441 - DEBUG - Taking top 8 variants by coverage in window 9:9226375-9226379
2012-10-07 16:12:14,553 - DEBUG - Taking top 8 variants by coverage in window 9:9226438-9226439
2012-10-07 16:12:14,892 - DEBUG - Taking top 8 variants by coverage in window 9:9228675-9228676
2012-10-07 16:12:15,316 - DEBUG - Taking top 8 variants by coverage in window 9:9231419-9231420
2012-10-07 16:12:15,612 - DEBUG - Taking top 8 variants by coverage in window 9:9233726-9233727
2012-10-07 16:12:16,382 - DEBUG - Taking top 8 variants by coverage in window 9:9241945-9241946
2012-10-07 16:12:16,393 - DEBUG - Taking top 8 variants by coverage in window 9:9241960-9241961
2012-10-07 16:12:17,034 - DEBUG - Taking top 8 variants by coverage in window 9:9249234-9249244
2012-10-07 16:12:17,191 - DEBUG - Taking top 8 variants by coverage in window 9:9251579-9251580
2012-10-07 16:12:17,698 - DEBUG - Taking top 8 variants by coverage in window 9:9261542-9261543
2012-10-07 16:12:17,778 - DEBUG - Taking top 8 variants by coverage in window 9:9263521-9263522
2012-10-07 16:12:18,860 - DEBUG - Taking top 8 variants by coverage in window 9:9277913-9277915
2012-10-07 16:12:18,878 - DEBUG - Taking top 8 variants by coverage in window 9:9278083-9278084
2012-10-07 16:12:19,168 - DEBUG - Taking top 8 variants by coverage in window 9:9283600-9283601
2012-10-07 16:12:19,652 - DEBUG - Taking top 8 variants by coverage in window 9:9299935-9299936
2012-10-07 16:12:19,741 - DEBUG - Taking top 8 variants by coverage in window 9:9302679-9302681
2012-10-07 16:12:19,757 - DEBUG - Taking top 8 variants by coverage in window 9:9302868-9302869
2012-10-07 16:12:19,828 - DEBUG - Taking top 8 variants by coverage in window 9:9303417-9303418
2012-10-07 16:12:20,080 - DEBUG - Taking top 8 variants by coverage in window 9:9306196-9306197
2012-10-07 16:12:20,408 - DEBUG - Taking top 8 variants by coverage in window 9:9313065-9313074
2012-10-07 16:12:20,506 - DEBUG - Taking top 8 variants by coverage in window 9:9313320-9313321
2012-10-07 16:12:20,633 - DEBUG - Taking top 8 variants by coverage in window 9:9313451-9313452
2012-10-07 16:12:21,031 - DEBUG - Taking top 8 variants by coverage in window 9:9322011-9322012
2012-10-07 16:12:21,167 - DEBUG - Taking top 8 variants by coverage in window 9:9324419-9324420
2012-10-07 16:12:21,558 - DEBUG - Taking top 8 variants by coverage in window 9:9333439-9333440
2012-10-07 16:12:22,311 - DEBUG - Taking top 8 variants by coverage in window 9:9354393-9354401
2012-10-07 16:12:22,374 - DEBUG - Taking top 8 variants by coverage in window 9:9354680-9354682
2012-10-07 16:12:22,508 - DEBUG - Taking top 8 variants by coverage in window 9:9355252-9355253
2012-10-07 16:12:22,846 - DEBUG - Taking top 8 variants by coverage in window 9:9363868-9363869
2012-10-07 16:12:25,143 - DEBUG - Taking top 8 variants by coverage in window 9:9412090-9412091
2012-10-07 16:12:25,418 - DEBUG - Taking top 8 variants by coverage in window 9:9417414-9417415
2012-10-07 16:12:25,451 - DEBUG - Taking top 8 variants by coverage in window 9:9417756-9417758
2012-10-07 16:12:25,455 - DEBUG - Taking top 8 variants by coverage in window 9:9417759-9417763
2012-10-07 16:12:25,609 - DEBUG - Taking top 8 variants by coverage in window 9:9421149-9421150
2012-10-07 16:12:25,647 - DEBUG - Taking top 8 variants by coverage in window 9:9421365-9421366
2012-10-07 16:12:25,880 - DEBUG - Taking top 8 variants by coverage in window 9:9424387-9424393
2012-10-07 16:12:25,901 - DEBUG - Taking top 8 variants by coverage in window 9:9424409-9424410
2012-10-07 16:12:25,939 - DEBUG - Taking top 8 variants by coverage in window 9:9424457-9424458
2012-10-07 16:12:26,418 - DEBUG - Taking top 8 variants by coverage in window 9:9433666-9433667
2012-10-07 16:12:27,095 - DEBUG - Taking top 8 variants by coverage in window 9:9445034-9445035
2012-10-07 16:12:27,709 - DEBUG - Taking top 8 variants by coverage in window 9:9457253-9457266
2012-10-07 16:12:27,769 - DEBUG - Taking top 8 variants by coverage in window 9:9457276-9457278
2012-10-07 16:12:28,704 - DEBUG - Taking top 8 variants by coverage in window 9:9467814-9467815
2012-10-07 16:12:28,778 - DEBUG - Taking top 8 variants by coverage in window 9:9468267-9468268
2012-10-07 16:12:29,221 - DEBUG - Taking top 8 variants by coverage in window 9:9486104-9486105
2012-10-07 16:12:29,559 - DEBUG - Taking top 8 variants by coverage in window 9:9502734-9502735
2012-10-07 16:12:30,192 - DEBUG - Taking top 8 variants by coverage in window 9:9519529-9519530
2012-10-07 16:12:30,333 - DEBUG - Taking top 8 variants by coverage in window 9:9520445-9520446
2012-10-07 16:12:30,440 - DEBUG - Taking top 8 variants by coverage in window 9:9520640-9520643
2012-10-07 16:12:31,076 - DEBUG - Taking top 8 variants by coverage in window 9:9527649-9527651
2012-10-07 16:12:31,169 - DEBUG - Taking top 8 variants by coverage in window 9:9528467-9528468
2012-10-07 16:12:31,361 - DEBUG - Taking top 8 variants by coverage in window 9:9533586-9533587
2012-10-07 16:12:31,622 - DEBUG - Taking top 8 variants by coverage in window 9:9538666-9538670
2012-10-07 16:12:32,111 - DEBUG - Taking top 8 variants by coverage in window 9:9556003-9556004
2012-10-07 16:12:32,126 - DEBUG - Taking top 8 variants by coverage in window 9:9556008-9556009
2012-10-07 16:12:32,155 - DEBUG - Taking top 8 variants by coverage in window 9:9556399-9556401
2012-10-07 16:12:32,244 - DEBUG - Taking top 8 variants by coverage in window 9:9560697-9560698
2012-10-07 16:12:32,722 - DEBUG - Taking top 8 variants by coverage in window 9:9570004-9570011
2012-10-07 16:12:32,744 - DEBUG - Taking top 8 variants by coverage in window 9:9570015-9570017
2012-10-07 16:12:33,703 - DEBUG - Taking top 8 variants by coverage in window 9:9578504-9578505
2012-10-07 16:12:33,741 - DEBUG - Taking top 8 variants by coverage in window 9:9579122-9579123
2012-10-07 16:12:34,979 - DEBUG - Taking top 8 variants by coverage in window 9:9601404-9601405
2012-10-07 16:12:35,407 - DEBUG - Taking top 8 variants by coverage in window 9:9607165-9607166
2012-10-07 16:12:36,216 - DEBUG - Taking top 8 variants by coverage in window 9:9629521-9629522
2012-10-07 16:12:36,231 - DEBUG - Taking top 8 variants by coverage in window 9:9629530-9629531
2012-10-07 16:12:37,023 - DEBUG - Taking top 8 variants by coverage in window 9:9641670-9641671
2012-10-07 16:12:37,199 - DEBUG - Taking top 8 variants by coverage in window 9:9643399-9643400
2012-10-07 16:12:37,220 - DEBUG - Taking top 8 variants by coverage in window 9:9643420-9643421
2012-10-07 16:12:37,281 - DEBUG - Taking top 8 variants by coverage in window 9:9643743-9643744
2012-10-07 16:12:37,667 - DEBUG - Taking top 8 variants by coverage in window 9:9651590-9651591
2012-10-07 16:12:38,077 - DEBUG - Taking top 8 variants by coverage in window 9:9662321-9662322
2012-10-07 16:12:38,178 - DEBUG - Taking top 8 variants by coverage in window 9:9665241-9665242
2012-10-07 16:12:39,149 - DEBUG - Taking top 8 variants by coverage in window 9:9678021-9678022
2012-10-07 16:12:40,352 - DEBUG - Taking top 8 variants by coverage in window 9:9698608-9698609
2012-10-07 16:12:40,784 - DEBUG - Taking top 8 variants by coverage in window 9:9702687-9702689
2012-10-07 16:12:40,819 - DEBUG - Taking top 8 variants by coverage in window 9:9703305-9703306
2012-10-07 16:12:40,936 - DEBUG - Taking top 8 variants by coverage in window 9:9704432-9704438
2012-10-07 16:12:42,709 - DEBUG - Taking top 8 variants by coverage in window 9:9728480-9728481
2012-10-07 16:12:44,922 - DEBUG - Taking top 8 variants by coverage in window 9:9753731-9753732
2012-10-07 16:12:45,058 - DEBUG - Taking top 8 variants by coverage in window 9:9754738-9754739
2012-10-07 16:12:45,901 - DEBUG - Taking top 8 variants by coverage in window 9:9771958-9771959
2012-10-07 16:12:45,925 - DEBUG - Taking top 8 variants by coverage in window 9:9771969-9771970
2012-10-07 16:12:45,969 - DEBUG - Taking top 8 variants by coverage in window 9:9772326-9772334
2012-10-07 16:12:46,620 - DEBUG - Taking top 8 variants by coverage in window 9:9784301-9784302
2012-10-07 16:12:46,793 - DEBUG - Taking top 8 variants by coverage in window 9:9786398-9786399
2012-10-07 16:12:46,932 - DEBUG - Taking top 8 variants by coverage in window 9:9788584-9788585
2012-10-07 16:12:48,245 - DEBUG - Taking top 8 variants by coverage in window 9:9804332-9804334
2012-10-07 16:12:48,878 - DEBUG - Taking top 8 variants by coverage in window 9:9812045-9812046
2012-10-07 16:12:48,946 - DEBUG - Taking top 8 variants by coverage in window 9:9812210-9812211
2012-10-07 16:12:49,292 - DEBUG - Taking top 8 variants by coverage in window 9:9814731-9814732
2012-10-07 16:12:50,167 - DEBUG - Taking top 8 variants by coverage in window 9:9829477-9829478
2012-10-07 16:12:50,355 - DEBUG - Taking top 8 variants by coverage in window 9:9835083-9835095
2012-10-07 16:12:50,920 - DEBUG - Taking top 8 variants by coverage in window 9:9843541-9843555
2012-10-07 16:12:51,199 - DEBUG - Taking top 8 variants by coverage in window 9:9846775-9846777
2012-10-07 16:12:51,344 - DEBUG - Taking top 8 variants by coverage in window 9:9852976-9852977
2012-10-07 16:12:52,543 - DEBUG - Taking top 8 variants by coverage in window 9:9873902-9873903
2012-10-07 16:12:52,553 - DEBUG - Taking top 8 variants by coverage in window 9:9873904-9873905
2012-10-07 16:12:52,577 - DEBUG - Taking top 8 variants by coverage in window 9:9873942-9873943
2012-10-07 16:12:52,939 - DEBUG - Taking top 8 variants by coverage in window 9:9879234-9879236
2012-10-07 16:12:53,343 - DEBUG - Taking top 8 variants by coverage in window 9:9886299-9886300
2012-10-07 16:12:53,505 - DEBUG - Taking top 8 variants by coverage in window 9:9887233-9887234
2012-10-07 16:12:53,545 - DEBUG - Taking top 8 variants by coverage in window 9:9887259-9887260
2012-10-07 16:12:53,603 - DEBUG - Taking top 8 variants by coverage in window 9:9887477-9887481
2012-10-07 16:12:53,693 - DEBUG - Taking top 8 variants by coverage in window 9:9891879-9891884
2012-10-07 16:12:53,728 - DEBUG - Taking top 8 variants by coverage in window 9:9891892-9891893
2012-10-07 16:12:53,826 - DEBUG - Taking top 8 variants by coverage in window 9:9892917-9892918
2012-10-07 16:12:54,260 - DEBUG - Taking top 8 variants by coverage in window 9:9896538-9896546
2012-10-07 16:12:57,106 - DEBUG - Taking top 8 variants by coverage in window 9:9933242-9933243
2012-10-07 16:12:57,395 - DEBUG - Taking top 8 variants by coverage in window 9:9938486-9938491
2012-10-07 16:12:57,625 - DEBUG - Taking top 8 variants by coverage in window 9:9940773-9940774
2012-10-07 16:12:57,654 - DEBUG - Taking top 8 variants by coverage in window 9:9940786-9940788
2012-10-07 16:12:58,532 - DEBUG - Taking top 8 variants by coverage in window 9:9947951-9947952
2012-10-07 16:12:58,551 - DEBUG - Taking top 8 variants by coverage in window 9:9947953-9947954
2012-10-07 16:12:58,615 - DEBUG - Taking top 8 variants by coverage in window 9:9948447-9948457
2012-10-07 16:12:59,657 - DEBUG - Taking top 8 variants by coverage in window 9:9965091-9965101
2012-10-07 16:13:00,803 - DEBUG - Taking top 8 variants by coverage in window 9:9977435-9977436
2012-10-07 16:13:00,817 - DEBUG - Taking top 8 variants by coverage in window 9:9977436-9977437
2012-10-07 16:13:01,017 - DEBUG - Taking top 8 variants by coverage in window 9:9979002-9979003
2012-10-07 16:13:01,033 - DEBUG - Taking top 8 variants by coverage in window 9:9979021-9979022
2012-10-07 16:13:01,943 - DEBUG - Taking top 8 variants by coverage in window 9:9991342-9991343
2012-10-07 16:13:02,331 - DEBUG - Taking top 8 variants by coverage in window 9:9996944-9996945
2012-10-07 16:13:02,428 - DEBUG - Taking top 8 variants by coverage in window 9:9998845-9998847
2012-10-07 16:13:02,437 - DEBUG - Taking top 8 variants by coverage in window 9:9998849-9998850
2012-10-07 16:13:03,403 - DEBUG - Read 81237 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 16:13:03,611 - DEBUG - Read 87881 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 16:13:03,843 - DEBUG - Read 104751 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 16:13:04,089 - DEBUG - Read 101853 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 16:13:04,332 - DEBUG - Read 100200 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 16:13:04,549 - DEBUG - Read 92912 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 16:13:04,779 - DEBUG - Read 100827 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 16:13:04,994 - DEBUG - Read 86477 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 16:13:05,194 - DEBUG - Read 82311 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 16:13:05,412 - DEBUG - Read 89784 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 16:13:05,637 - DEBUG - Read 97235 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 16:13:05,832 - DEBUG - Read 82637 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 16:13:06,035 - DEBUG - Read 84331 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 16:13:06,322 - DEBUG - Read 93937 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 16:13:06,584 - DEBUG - Read 102263 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 16:13:06,778 - DEBUG - Read 77636 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 16:13:06,995 - DEBUG - Read 97046 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 16:13:07,226 - DEBUG - Read 97608 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 16:13:07,406 - DEBUG - Read 74669 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 16:13:07,612 - DEBUG - Read 84045 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 16:13:07,704 - DEBUG - Detected 21306 variants in 81237 reads
2012-10-07 16:13:07,848 - DEBUG - Detected 32460 variants in 87881 reads
2012-10-07 16:13:08,061 - DEBUG - Detected 41092 variants in 104751 reads
2012-10-07 16:13:08,280 - DEBUG - Detected 49772 variants in 101853 reads
2012-10-07 16:13:08,538 - DEBUG - Detected 57350 variants in 100200 reads
2012-10-07 16:13:08,825 - DEBUG - Detected 62296 variants in 92912 reads
2012-10-07 16:13:09,147 - DEBUG - Detected 75169 variants in 100827 reads
2012-10-07 16:13:09,506 - DEBUG - Detected 79508 variants in 86477 reads
2012-10-07 16:13:09,885 - DEBUG - Detected 84682 variants in 82311 reads
2012-10-07 16:13:10,330 - DEBUG - Detected 90127 variants in 89784 reads
2012-10-07 16:13:10,747 - DEBUG - Detected 94722 variants in 97235 reads
2012-10-07 16:13:11,192 - DEBUG - Detected 100678 variants in 82637 reads
2012-10-07 16:13:11,656 - DEBUG - Detected 104376 variants in 84331 reads
2012-10-07 16:13:12,151 - DEBUG - Detected 109698 variants in 93937 reads
2012-10-07 16:13:12,678 - DEBUG - Detected 115980 variants in 102263 reads
2012-10-07 16:13:13,261 - DEBUG - Detected 119354 variants in 77636 reads
2012-10-07 16:13:13,827 - DEBUG - Detected 122577 variants in 97046 reads
2012-10-07 16:13:14,399 - DEBUG - Detected 126282 variants in 97608 reads
2012-10-07 16:13:14,975 - DEBUG - Detected 130734 variants in 74669 reads
2012-10-07 16:13:15,553 - DEBUG - Detected 134538 variants in 84045 reads
2012-10-07 16:13:17,856 - DEBUG - Taking top 8 variants by coverage in window 9:10023020-10023024
2012-10-07 16:13:18,081 - DEBUG - Taking top 8 variants by coverage in window 9:10026435-10026437
2012-10-07 16:13:19,013 - DEBUG - Taking top 8 variants by coverage in window 9:10038278-10038285
2012-10-07 16:13:19,781 - DEBUG - Taking top 8 variants by coverage in window 9:10044331-10044332
2012-10-07 16:13:19,794 - DEBUG - Taking top 8 variants by coverage in window 9:10044332-10044334
2012-10-07 16:13:21,753 - DEBUG - Taking top 8 variants by coverage in window 9:10076672-10076679
2012-10-07 16:13:22,629 - DEBUG - Taking top 8 variants by coverage in window 9:10087207-10087208
2012-10-07 16:13:23,136 - DEBUG - Taking top 8 variants by coverage in window 9:10094576-10094577
2012-10-07 16:13:23,893 - DEBUG - Taking top 8 variants by coverage in window 9:10106002-10106003
2012-10-07 16:13:24,296 - DEBUG - Taking top 8 variants by coverage in window 9:10109465-10109473
2012-10-07 16:13:24,316 - DEBUG - Taking top 8 variants by coverage in window 9:10109668-10109669
2012-10-07 16:13:24,780 - DEBUG - Taking top 8 variants by coverage in window 9:10116352-10116363
2012-10-07 16:13:25,244 - DEBUG - Taking top 8 variants by coverage in window 9:10120104-10120113
2012-10-07 16:13:25,441 - DEBUG - Taking top 8 variants by coverage in window 9:10122799-10122802
2012-10-07 16:13:25,535 - DEBUG - Taking top 8 variants by coverage in window 9:10122806-10122808
2012-10-07 16:13:30,966 - DEBUG - Taking top 8 variants by coverage in window 9:10202195-10202196
2012-10-07 16:13:32,220 - DEBUG - Taking top 8 variants by coverage in window 9:10213046-10213047
2012-10-07 16:13:32,568 - DEBUG - Taking top 8 variants by coverage in window 9:10215989-10215990
2012-10-07 16:13:33,433 - DEBUG - Taking top 8 variants by coverage in window 9:10234823-10234824
2012-10-07 16:13:34,533 - DEBUG - Taking top 8 variants by coverage in window 9:10252124-10252125
2012-10-07 16:13:34,895 - DEBUG - Taking top 8 variants by coverage in window 9:10258246-10258254
2012-10-07 16:13:35,131 - DEBUG - Taking top 8 variants by coverage in window 9:10260388-10260389
2012-10-07 16:13:35,726 - DEBUG - Taking top 8 variants by coverage in window 9:10266257-10266260
2012-10-07 16:13:36,399 - DEBUG - Taking top 8 variants by coverage in window 9:10280097-10280098
2012-10-07 16:13:36,923 - DEBUG - Taking top 8 variants by coverage in window 9:10288651-10288652
2012-10-07 16:13:37,117 - DEBUG - Taking top 8 variants by coverage in window 9:10290275-10290278
2012-10-07 16:13:37,207 - DEBUG - Taking top 8 variants by coverage in window 9:10295363-10295364
2012-10-07 16:13:37,455 - DEBUG - Taking top 8 variants by coverage in window 9:10297868-10297869
2012-10-07 16:13:37,874 - DEBUG - Taking top 8 variants by coverage in window 9:10303098-10303099
2012-10-07 16:13:39,424 - DEBUG - Taking top 8 variants by coverage in window 9:10324113-10324115
2012-10-07 16:13:39,580 - DEBUG - Taking top 8 variants by coverage in window 9:10325777-10325778
2012-10-07 16:13:39,601 - DEBUG - Taking top 8 variants by coverage in window 9:10325798-10325799
2012-10-07 16:13:39,674 - DEBUG - Taking top 8 variants by coverage in window 9:10326402-10326404
2012-10-07 16:13:39,706 - DEBUG - Taking top 8 variants by coverage in window 9:10326425-10326430
2012-10-07 16:13:40,489 - DEBUG - Taking top 8 variants by coverage in window 9:10335184-10335185
2012-10-07 16:13:43,725 - DEBUG - Taking top 8 variants by coverage in window 9:10382585-10382587
2012-10-07 16:13:44,174 - DEBUG - Taking top 8 variants by coverage in window 9:10385410-10385411
2012-10-07 16:13:44,462 - DEBUG - Taking top 8 variants by coverage in window 9:10390696-10390697
2012-10-07 16:13:45,092 - DEBUG - Taking top 8 variants by coverage in window 9:10397686-10397687
2012-10-07 16:13:45,345 - DEBUG - Taking top 8 variants by coverage in window 9:10400922-10400923
2012-10-07 16:13:46,012 - DEBUG - Taking top 8 variants by coverage in window 9:10412301-10412309
2012-10-07 16:13:46,755 - DEBUG - Taking top 8 variants by coverage in window 9:10423400-10423401
2012-10-07 16:13:47,574 - DEBUG - Taking top 8 variants by coverage in window 9:10430728-10430729
2012-10-07 16:13:48,805 - DEBUG - Taking top 8 variants by coverage in window 9:10445708-10445718
2012-10-07 16:13:48,956 - DEBUG - Taking top 8 variants by coverage in window 9:10447001-10447002
2012-10-07 16:13:48,996 - DEBUG - Taking top 8 variants by coverage in window 9:10447005-10447008
2012-10-07 16:13:49,092 - DEBUG - Taking top 8 variants by coverage in window 9:10447022-10447024
2012-10-07 16:13:49,282 - DEBUG - Taking top 8 variants by coverage in window 9:10448920-10448921
2012-10-07 16:13:49,811 - DEBUG - Taking top 8 variants by coverage in window 9:10455972-10455973
2012-10-07 16:13:51,732 - DEBUG - Taking top 8 variants by coverage in window 9:10474728-10474730
2012-10-07 16:13:51,792 - DEBUG - Taking top 8 variants by coverage in window 9:10474754-10474755
2012-10-07 16:13:54,364 - DEBUG - Taking top 8 variants by coverage in window 9:10503166-10503167
2012-10-07 16:13:54,972 - DEBUG - Taking top 8 variants by coverage in window 9:10509288-10509300
2012-10-07 16:13:55,366 - DEBUG - Taking top 8 variants by coverage in window 9:10512241-10512244
2012-10-07 16:13:55,506 - DEBUG - Taking top 8 variants by coverage in window 9:10512254-10512255
2012-10-07 16:13:55,901 - DEBUG - Taking top 8 variants by coverage in window 9:10514993-10515001
2012-10-07 16:13:57,222 - DEBUG - Taking top 8 variants by coverage in window 9:10531339-10531340
2012-10-07 16:13:57,837 - DEBUG - Taking top 8 variants by coverage in window 9:10538272-10538273
2012-10-07 16:13:59,444 - DEBUG - Taking top 8 variants by coverage in window 9:10562680-10562681
2012-10-07 16:14:00,336 - DEBUG - Taking top 8 variants by coverage in window 9:10572064-10572065
2012-10-07 16:14:01,074 - DEBUG - Taking top 8 variants by coverage in window 9:10582309-10582322
2012-10-07 16:14:04,605 - DEBUG - Taking top 8 variants by coverage in window 9:10616218-10616219
2012-10-07 16:14:04,977 - DEBUG - Taking top 8 variants by coverage in window 9:10619171-10619172
2012-10-07 16:14:05,192 - DEBUG - Taking top 8 variants by coverage in window 9:10619611-10619612
2012-10-07 16:14:05,211 - DEBUG - Taking top 8 variants by coverage in window 9:10619613-10619618
2012-10-07 16:14:05,240 - DEBUG - Taking top 8 variants by coverage in window 9:10619627-10619628
2012-10-07 16:14:06,751 - DEBUG - Taking top 8 variants by coverage in window 9:10637701-10637702
2012-10-07 16:14:06,805 - DEBUG - Taking top 8 variants by coverage in window 9:10638063-10638064
2012-10-07 16:14:07,043 - DEBUG - Taking top 8 variants by coverage in window 9:10639696-10639698
2012-10-07 16:14:07,125 - DEBUG - Taking top 8 variants by coverage in window 9:10639900-10639902
2012-10-07 16:14:07,195 - DEBUG - Taking top 8 variants by coverage in window 9:10639961-10639966
2012-10-07 16:14:07,216 - DEBUG - Taking top 8 variants by coverage in window 9:10639970-10639971
2012-10-07 16:14:07,909 - DEBUG - Taking top 8 variants by coverage in window 9:10646958-10646966
2012-10-07 16:14:08,937 - DEBUG - Taking top 8 variants by coverage in window 9:10652969-10652970
2012-10-07 16:14:09,498 - DEBUG - Taking top 8 variants by coverage in window 9:10661164-10661165
2012-10-07 16:14:10,200 - DEBUG - Taking top 8 variants by coverage in window 9:10667020-10667028
2012-10-07 16:14:11,097 - DEBUG - Taking top 8 variants by coverage in window 9:10674024-10674025
2012-10-07 16:14:12,873 - DEBUG - Taking top 8 variants by coverage in window 9:10690721-10690722
2012-10-07 16:14:13,548 - DEBUG - Taking top 8 variants by coverage in window 9:10699403-10699407
2012-10-07 16:14:13,918 - DEBUG - Taking top 8 variants by coverage in window 9:10707566-10707567
2012-10-07 16:14:15,114 - DEBUG - Taking top 8 variants by coverage in window 9:10724698-10724699
2012-10-07 16:14:15,153 - DEBUG - Taking top 8 variants by coverage in window 9:10724734-10724735
2012-10-07 16:14:15,674 - DEBUG - Taking top 8 variants by coverage in window 9:10732794-10732810
2012-10-07 16:14:16,137 - DEBUG - Taking top 8 variants by coverage in window 9:10737157-10737165
2012-10-07 16:14:16,287 - DEBUG - Taking top 8 variants by coverage in window 9:10738267-10738269
2012-10-07 16:14:16,800 - DEBUG - Taking top 8 variants by coverage in window 9:10741075-10741076
2012-10-07 16:14:17,210 - DEBUG - Taking top 8 variants by coverage in window 9:10747740-10747743
2012-10-07 16:14:17,610 - DEBUG - Taking top 8 variants by coverage in window 9:10750500-10750510
2012-10-07 16:14:19,375 - DEBUG - Taking top 8 variants by coverage in window 9:10772371-10772376
2012-10-07 16:14:22,464 - DEBUG - Taking top 8 variants by coverage in window 9:10823581-10823582
2012-10-07 16:14:24,260 - DEBUG - Taking top 8 variants by coverage in window 9:10845121-10845122
2012-10-07 16:14:24,352 - DEBUG - Taking top 8 variants by coverage in window 9:10845272-10845275
2012-10-07 16:14:25,075 - DEBUG - Taking top 8 variants by coverage in window 9:10853896-10853906
2012-10-07 16:14:26,836 - DEBUG - Taking top 8 variants by coverage in window 9:10877234-10877235
2012-10-07 16:14:27,098 - DEBUG - Taking top 8 variants by coverage in window 9:10882251-10882252
2012-10-07 16:14:27,414 - DEBUG - Taking top 8 variants by coverage in window 9:10889640-10889641
2012-10-07 16:14:27,761 - DEBUG - Taking top 8 variants by coverage in window 9:10897224-10897225
2012-10-07 16:14:29,640 - DEBUG - Taking top 8 variants by coverage in window 9:10920857-10920858
2012-10-07 16:14:29,998 - DEBUG - Taking top 8 variants by coverage in window 9:10923783-10923795
2012-10-07 16:14:31,429 - DEBUG - Taking top 8 variants by coverage in window 9:10936162-10936163
2012-10-07 16:14:31,840 - DEBUG - Taking top 8 variants by coverage in window 9:10940325-10940332
2012-10-07 16:14:34,117 - DEBUG - Taking top 8 variants by coverage in window 9:10971450-10971451
2012-10-07 16:14:34,499 - DEBUG - Taking top 8 variants by coverage in window 9:10976784-10976785
2012-10-07 16:14:35,047 - DEBUG - Taking top 8 variants by coverage in window 9:10984287-10984288
2012-10-07 16:14:35,181 - DEBUG - Taking top 8 variants by coverage in window 9:10985773-10985774
2012-10-07 16:14:36,860 - DEBUG - Read 73970 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 16:14:37,062 - DEBUG - Read 80658 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 16:14:37,286 - DEBUG - Read 96003 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 16:14:37,525 - DEBUG - Read 91980 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 16:14:37,759 - DEBUG - Read 91219 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 16:14:37,969 - DEBUG - Read 85191 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 16:14:38,194 - DEBUG - Read 92871 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 16:14:38,400 - DEBUG - Read 78581 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 16:14:38,596 - DEBUG - Read 76131 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 16:14:38,804 - DEBUG - Read 81168 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 16:14:39,024 - DEBUG - Read 87892 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 16:14:39,212 - DEBUG - Read 75143 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 16:14:39,408 - DEBUG - Read 75892 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 16:14:39,609 - DEBUG - Read 84581 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 16:14:39,835 - DEBUG - Read 93780 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 16:14:40,026 - DEBUG - Read 71797 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 16:14:40,241 - DEBUG - Read 91607 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 16:14:40,464 - DEBUG - Read 89743 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 16:14:40,640 - DEBUG - Read 68206 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 16:14:40,840 - DEBUG - Read 75311 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 16:14:40,930 - DEBUG - Detected 20055 variants in 73970 reads
2012-10-07 16:14:41,066 - DEBUG - Detected 32054 variants in 80658 reads
2012-10-07 16:14:41,261 - DEBUG - Detected 41761 variants in 96003 reads
2012-10-07 16:14:41,492 - DEBUG - Detected 52550 variants in 91980 reads
2012-10-07 16:14:41,758 - DEBUG - Detected 57920 variants in 91219 reads
2012-10-07 16:14:42,045 - DEBUG - Detected 64421 variants in 85191 reads
2012-10-07 16:14:42,397 - DEBUG - Detected 76744 variants in 92871 reads
2012-10-07 16:14:42,756 - DEBUG - Detected 80467 variants in 78581 reads
2012-10-07 16:14:43,131 - DEBUG - Detected 84833 variants in 76131 reads
2012-10-07 16:14:43,529 - DEBUG - Detected 88781 variants in 81168 reads
2012-10-07 16:14:43,957 - DEBUG - Detected 97718 variants in 87892 reads
2012-10-07 16:14:44,401 - DEBUG - Detected 101199 variants in 75143 reads
2012-10-07 16:14:44,909 - DEBUG - Detected 104664 variants in 75892 reads
2012-10-07 16:14:45,397 - DEBUG - Detected 108924 variants in 84581 reads
2012-10-07 16:14:45,907 - DEBUG - Detected 114917 variants in 93780 reads
2012-10-07 16:14:46,423 - DEBUG - Detected 118971 variants in 71797 reads
2012-10-07 16:14:46,985 - DEBUG - Detected 122290 variants in 91607 reads
2012-10-07 16:14:47,555 - DEBUG - Detected 125727 variants in 89743 reads
2012-10-07 16:14:48,171 - DEBUG - Detected 129718 variants in 68206 reads
2012-10-07 16:14:48,761 - DEBUG - Detected 133789 variants in 75311 reads
2012-10-07 16:14:51,839 - DEBUG - Taking top 8 variants by coverage in window 9:11033843-11033844
2012-10-07 16:14:52,333 - DEBUG - Taking top 8 variants by coverage in window 9:11041714-11041728
2012-10-07 16:14:53,551 - DEBUG - Taking top 8 variants by coverage in window 9:11066018-11066019
2012-10-07 16:14:53,657 - DEBUG - Taking top 8 variants by coverage in window 9:11067231-11067232
2012-10-07 16:14:55,683 - DEBUG - Taking top 8 variants by coverage in window 9:11090592-11090593
2012-10-07 16:14:56,042 - DEBUG - Taking top 8 variants by coverage in window 9:11093480-11093483
2012-10-07 16:14:57,021 - DEBUG - Taking top 8 variants by coverage in window 9:11103531-11103532
2012-10-07 16:14:57,245 - DEBUG - Taking top 8 variants by coverage in window 9:11105768-11105772
2012-10-07 16:14:58,389 - DEBUG - Taking top 8 variants by coverage in window 9:11119452-11119453
2012-10-07 16:14:58,977 - DEBUG - Taking top 8 variants by coverage in window 9:11125279-11125280
2012-10-07 16:14:59,559 - DEBUG - Taking top 8 variants by coverage in window 9:11131630-11131633
2012-10-07 16:14:59,936 - DEBUG - Taking top 8 variants by coverage in window 9:11141709-11141712
2012-10-07 16:15:00,440 - DEBUG - Taking top 8 variants by coverage in window 9:11146921-11146923
2012-10-07 16:15:00,451 - DEBUG - Taking top 8 variants by coverage in window 9:11146927-11146928
2012-10-07 16:15:02,897 - DEBUG - Taking top 8 variants by coverage in window 9:11171340-11171341
2012-10-07 16:15:02,947 - DEBUG - Taking top 8 variants by coverage in window 9:11172145-11172146
2012-10-07 16:15:03,290 - DEBUG - Taking top 8 variants by coverage in window 9:11176401-11176408
2012-10-07 16:15:03,652 - DEBUG - Taking top 8 variants by coverage in window 9:11179877-11179879
2012-10-07 16:15:04,470 - DEBUG - Taking top 8 variants by coverage in window 9:11187133-11187137
2012-10-07 16:15:04,798 - DEBUG - Taking top 8 variants by coverage in window 9:11189990-11189992
2012-10-07 16:15:05,873 - DEBUG - Taking top 8 variants by coverage in window 9:11199377-11199382
2012-10-07 16:15:07,163 - DEBUG - Taking top 8 variants by coverage in window 9:11211453-11211457
2012-10-07 16:15:07,841 - DEBUG - Taking top 8 variants by coverage in window 9:11219525-11219532
2012-10-07 16:15:09,333 - DEBUG - Taking top 8 variants by coverage in window 9:11230710-11230711
2012-10-07 16:15:09,714 - DEBUG - Taking top 8 variants by coverage in window 9:11234170-11234171
2012-10-07 16:15:09,796 - DEBUG - Taking top 8 variants by coverage in window 9:11234335-11234337
2012-10-07 16:15:10,003 - DEBUG - Taking top 8 variants by coverage in window 9:11235583-11235587
2012-10-07 16:15:10,066 - DEBUG - Taking top 8 variants by coverage in window 9:11235594-11235595
2012-10-07 16:15:13,089 - DEBUG - Taking top 8 variants by coverage in window 9:11267821-11267822
2012-10-07 16:15:13,738 - DEBUG - Taking top 8 variants by coverage in window 9:11274667-11274668
2012-10-07 16:15:15,752 - DEBUG - Taking top 8 variants by coverage in window 9:11297456-11297457
2012-10-07 16:15:16,407 - DEBUG - Taking top 8 variants by coverage in window 9:11307494-11307495
2012-10-07 16:15:16,436 - DEBUG - Taking top 8 variants by coverage in window 9:11307543-11307544
2012-10-07 16:15:17,350 - DEBUG - Taking top 8 variants by coverage in window 9:11317532-11317533
2012-10-07 16:15:17,457 - DEBUG - Taking top 8 variants by coverage in window 9:11319113-11319116
2012-10-07 16:15:17,609 - DEBUG - Taking top 8 variants by coverage in window 9:11321344-11321364
2012-10-07 16:15:18,000 - DEBUG - Taking top 8 variants by coverage in window 9:11324804-11324807
2012-10-07 16:15:18,071 - DEBUG - Taking top 8 variants by coverage in window 9:11324824-11324825
2012-10-07 16:15:18,352 - DEBUG - Taking top 8 variants by coverage in window 9:11328442-11328443
2012-10-07 16:15:18,614 - DEBUG - Taking top 8 variants by coverage in window 9:11329599-11329600
2012-10-07 16:15:18,649 - DEBUG - Taking top 8 variants by coverage in window 9:11329647-11329648
2012-10-07 16:15:19,173 - DEBUG - Taking top 8 variants by coverage in window 9:11334637-11334638
2012-10-07 16:15:19,812 - DEBUG - Taking top 8 variants by coverage in window 9:11339742-11339743
2012-10-07 16:15:21,836 - DEBUG - Taking top 8 variants by coverage in window 9:11363364-11363365
2012-10-07 16:15:21,931 - DEBUG - Taking top 8 variants by coverage in window 9:11364203-11364206
2012-10-07 16:15:22,438 - DEBUG - Taking top 8 variants by coverage in window 9:11371498-11371499
2012-10-07 16:15:23,420 - DEBUG - Taking top 8 variants by coverage in window 9:11383136-11383137
2012-10-07 16:15:23,486 - DEBUG - Taking top 8 variants by coverage in window 9:11383909-11383910
2012-10-07 16:15:24,917 - DEBUG - Taking top 8 variants by coverage in window 9:11400574-11400575
2012-10-07 16:15:24,949 - DEBUG - Taking top 8 variants by coverage in window 9:11402449-11402450
2012-10-07 16:15:25,604 - DEBUG - Taking top 8 variants by coverage in window 9:11417284-11417285
2012-10-07 16:15:25,813 - DEBUG - Taking top 8 variants by coverage in window 9:11420866-11420867
2012-10-07 16:15:25,819 - DEBUG - Taking top 8 variants by coverage in window 9:11420867-11420869
2012-10-07 16:15:26,088 - DEBUG - Taking top 8 variants by coverage in window 9:11421440-11421444
2012-10-07 16:15:26,501 - DEBUG - Taking top 8 variants by coverage in window 9:11424886-11424887
2012-10-07 16:15:26,694 - DEBUG - Taking top 8 variants by coverage in window 9:11426844-11426848
2012-10-07 16:15:26,927 - DEBUG - Taking top 8 variants by coverage in window 9:11429021-11429023
2012-10-07 16:15:27,211 - DEBUG - Taking top 8 variants by coverage in window 9:11432348-11432349
2012-10-07 16:15:27,236 - DEBUG - Taking top 8 variants by coverage in window 9:11432372-11432378
2012-10-07 16:15:29,759 - DEBUG - Taking top 8 variants by coverage in window 9:11473023-11473024
2012-10-07 16:15:29,829 - DEBUG - Taking top 8 variants by coverage in window 9:11473481-11473483
2012-10-07 16:15:29,884 - DEBUG - Taking top 8 variants by coverage in window 9:11478657-11478671
2012-10-07 16:15:30,933 - DEBUG - Taking top 8 variants by coverage in window 9:11491926-11491931
2012-10-07 16:15:30,958 - DEBUG - Taking top 8 variants by coverage in window 9:11491954-11491955
2012-10-07 16:15:31,419 - DEBUG - Taking top 8 variants by coverage in window 9:11498068-11498069
2012-10-07 16:15:31,622 - DEBUG - Taking top 8 variants by coverage in window 9:11507065-11507066
2012-10-07 16:15:33,162 - DEBUG - Taking top 8 variants by coverage in window 9:11527161-11527162
2012-10-07 16:15:33,847 - DEBUG - Taking top 8 variants by coverage in window 9:11539166-11539168
2012-10-07 16:15:34,657 - DEBUG - Taking top 8 variants by coverage in window 9:11557656-11557657
2012-10-07 16:15:35,037 - DEBUG - Taking top 8 variants by coverage in window 9:11563683-11563684
2012-10-07 16:15:35,941 - DEBUG - Taking top 8 variants by coverage in window 9:11579585-11579586
2012-10-07 16:15:36,238 - DEBUG - Taking top 8 variants by coverage in window 9:11582459-11582460
2012-10-07 16:15:36,948 - DEBUG - Taking top 8 variants by coverage in window 9:11590753-11590762
2012-10-07 16:15:37,708 - DEBUG - Taking top 8 variants by coverage in window 9:11597798-11597799
2012-10-07 16:15:37,965 - DEBUG - Taking top 8 variants by coverage in window 9:11599279-11599280
2012-10-07 16:15:37,985 - DEBUG - Taking top 8 variants by coverage in window 9:11599282-11599284
2012-10-07 16:15:38,450 - DEBUG - Taking top 8 variants by coverage in window 9:11604203-11604204
2012-10-07 16:15:41,356 - DEBUG - Taking top 8 variants by coverage in window 9:11631536-11631541
2012-10-07 16:15:41,442 - DEBUG - Taking top 8 variants by coverage in window 9:11632479-11632482
2012-10-07 16:15:41,856 - DEBUG - Taking top 8 variants by coverage in window 9:11640900-11640901
2012-10-07 16:15:43,084 - DEBUG - Taking top 8 variants by coverage in window 9:11652032-11652034
2012-10-07 16:15:43,206 - DEBUG - Taking top 8 variants by coverage in window 9:11659080-11659081
2012-10-07 16:15:43,379 - DEBUG - Taking top 8 variants by coverage in window 9:11661049-11661053
2012-10-07 16:15:44,060 - DEBUG - Taking top 8 variants by coverage in window 9:11670099-11670109
2012-10-07 16:15:45,319 - DEBUG - Taking top 8 variants by coverage in window 9:11687567-11687569
2012-10-07 16:15:45,576 - DEBUG - Taking top 8 variants by coverage in window 9:11692806-11692808
2012-10-07 16:15:45,710 - DEBUG - Taking top 8 variants by coverage in window 9:11693570-11693571
2012-10-07 16:15:45,727 - DEBUG - Taking top 8 variants by coverage in window 9:11693574-11693575
2012-10-07 16:15:45,812 - DEBUG - Taking top 8 variants by coverage in window 9:11694459-11694473
2012-10-07 16:15:47,890 - DEBUG - Taking top 8 variants by coverage in window 9:11715042-11715043
2012-10-07 16:15:48,079 - DEBUG - Taking top 8 variants by coverage in window 9:11718865-11718866
2012-10-07 16:15:49,387 - DEBUG - Taking top 8 variants by coverage in window 9:11737152-11737154
2012-10-07 16:15:49,422 - DEBUG - Taking top 8 variants by coverage in window 9:11737164-11737165
2012-10-07 16:15:50,773 - DEBUG - Taking top 8 variants by coverage in window 9:11751694-11751696
2012-10-07 16:15:53,116 - DEBUG - Taking top 8 variants by coverage in window 9:11778056-11778057
2012-10-07 16:15:56,881 - DEBUG - Taking top 8 variants by coverage in window 9:11851058-11851059
2012-10-07 16:15:58,770 - DEBUG - Taking top 8 variants by coverage in window 9:11877879-11877880
2012-10-07 16:16:00,959 - DEBUG - Taking top 8 variants by coverage in window 9:11905352-11905353
2012-10-07 16:16:00,971 - DEBUG - Taking top 8 variants by coverage in window 9:11905356-11905357
2012-10-07 16:16:01,004 - DEBUG - Taking top 8 variants by coverage in window 9:11905372-11905380
2012-10-07 16:16:01,049 - DEBUG - Taking top 8 variants by coverage in window 9:11905660-11905662
2012-10-07 16:16:01,121 - DEBUG - Taking top 8 variants by coverage in window 9:11905737-11905740
2012-10-07 16:16:01,336 - DEBUG - Taking top 8 variants by coverage in window 9:11905747-11905748
2012-10-07 16:16:01,973 - DEBUG - Taking top 8 variants by coverage in window 9:11916119-11916129
2012-10-07 16:16:02,165 - DEBUG - Taking top 8 variants by coverage in window 9:11918232-11918233
2012-10-07 16:16:02,769 - DEBUG - Taking top 8 variants by coverage in window 9:11923338-11923339
2012-10-07 16:16:04,057 - DEBUG - Taking top 8 variants by coverage in window 9:11937264-11937265
2012-10-07 16:16:04,399 - DEBUG - Taking top 8 variants by coverage in window 9:11941397-11941399
2012-10-07 16:16:08,438 - DEBUG - Taking top 8 variants by coverage in window 9:11994915-11994922
2012-10-07 16:16:08,465 - DEBUG - Taking top 8 variants by coverage in window 9:11994961-11994963
2012-10-07 16:16:09,628 - DEBUG - Read 76290 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 16:16:09,831 - DEBUG - Read 80325 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 16:16:10,058 - DEBUG - Read 97734 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 16:16:10,302 - DEBUG - Read 94947 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 16:16:10,542 - DEBUG - Read 93460 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 16:16:10,759 - DEBUG - Read 87919 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 16:16:10,988 - DEBUG - Read 95021 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 16:16:11,199 - DEBUG - Read 80303 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 16:16:11,397 - DEBUG - Read 77566 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 16:16:11,609 - DEBUG - Read 83330 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 16:16:11,831 - DEBUG - Read 88724 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 16:16:12,023 - DEBUG - Read 76472 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 16:16:12,226 - DEBUG - Read 78984 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 16:16:12,432 - DEBUG - Read 87848 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 16:16:12,659 - DEBUG - Read 93191 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 16:16:12,855 - DEBUG - Read 74567 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 16:16:13,067 - DEBUG - Read 90172 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 16:16:13,293 - DEBUG - Read 90243 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 16:16:13,473 - DEBUG - Read 70908 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 16:16:13,676 - DEBUG - Read 76288 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 16:16:13,764 - DEBUG - Detected 19648 variants in 76290 reads
2012-10-07 16:16:13,899 - DEBUG - Detected 31631 variants in 80325 reads
2012-10-07 16:16:14,103 - DEBUG - Detected 37488 variants in 97734 reads
2012-10-07 16:16:14,314 - DEBUG - Detected 43377 variants in 94947 reads
2012-10-07 16:16:14,544 - DEBUG - Detected 48246 variants in 93460 reads
2012-10-07 16:16:14,796 - DEBUG - Detected 58070 variants in 87919 reads
2012-10-07 16:16:15,092 - DEBUG - Detected 70375 variants in 95021 reads
2012-10-07 16:16:15,423 - DEBUG - Detected 74129 variants in 80303 reads
2012-10-07 16:16:15,766 - DEBUG - Detected 78494 variants in 77566 reads
2012-10-07 16:16:16,136 - DEBUG - Detected 82723 variants in 83330 reads
2012-10-07 16:16:16,560 - DEBUG - Detected 87345 variants in 88724 reads
2012-10-07 16:16:16,968 - DEBUG - Detected 91035 variants in 76472 reads
2012-10-07 16:16:17,384 - DEBUG - Detected 94215 variants in 78984 reads
2012-10-07 16:16:17,827 - DEBUG - Detected 98493 variants in 87848 reads
2012-10-07 16:16:18,294 - DEBUG - Detected 105469 variants in 93191 reads
2012-10-07 16:16:18,771 - DEBUG - Detected 109771 variants in 74567 reads
2012-10-07 16:16:19,282 - DEBUG - Detected 113305 variants in 90172 reads
2012-10-07 16:16:19,861 - DEBUG - Detected 116658 variants in 90243 reads
2012-10-07 16:16:20,392 - DEBUG - Detected 119740 variants in 70908 reads
2012-10-07 16:16:20,941 - DEBUG - Detected 123468 variants in 76288 reads
2012-10-07 16:16:22,011 - DEBUG - Taking top 8 variants by coverage in window 9:12000875-12000877
2012-10-07 16:16:22,057 - DEBUG - Taking top 8 variants by coverage in window 9:12001023-12001024
2012-10-07 16:16:22,104 - DEBUG - Taking top 8 variants by coverage in window 9:12001101-12001102
2012-10-07 16:16:22,123 - DEBUG - Taking top 8 variants by coverage in window 9:12001112-12001113
2012-10-07 16:16:22,190 - DEBUG - Taking top 8 variants by coverage in window 9:12001500-12001507
2012-10-07 16:16:24,229 - DEBUG - Taking top 8 variants by coverage in window 9:12021300-12021301
2012-10-07 16:16:24,382 - DEBUG - Taking top 8 variants by coverage in window 9:12027075-12027076
2012-10-07 16:16:24,473 - DEBUG - Taking top 8 variants by coverage in window 9:12027646-12027647
2012-10-07 16:16:24,696 - DEBUG - Taking top 8 variants by coverage in window 9:12030654-12030662
2012-10-07 16:16:26,498 - DEBUG - Taking top 8 variants by coverage in window 9:12066266-12066267
2012-10-07 16:16:26,750 - DEBUG - Taking top 8 variants by coverage in window 9:12072152-12072155
2012-10-07 16:16:26,938 - DEBUG - Taking top 8 variants by coverage in window 9:12074473-12074477
2012-10-07 16:16:28,872 - DEBUG - Taking top 8 variants by coverage in window 9:12096302-12096305
2012-10-07 16:16:28,893 - DEBUG - Taking top 8 variants by coverage in window 9:12096335-12096336
2012-10-07 16:16:29,896 - DEBUG - Taking top 8 variants by coverage in window 9:12104630-12104632
2012-10-07 16:16:30,163 - DEBUG - Taking top 8 variants by coverage in window 9:12107014-12107015
2012-10-07 16:16:30,241 - DEBUG - Taking top 8 variants by coverage in window 9:12107096-12107097
2012-10-07 16:16:32,633 - DEBUG - Taking top 8 variants by coverage in window 9:12144826-12144827
2012-10-07 16:16:35,634 - DEBUG - Taking top 8 variants by coverage in window 9:12183613-12183614
2012-10-07 16:16:36,159 - DEBUG - Taking top 8 variants by coverage in window 9:12188260-12188267
2012-10-07 16:16:38,428 - DEBUG - Taking top 8 variants by coverage in window 9:12227334-12227338
2012-10-07 16:16:38,914 - DEBUG - Taking top 8 variants by coverage in window 9:12234589-12234590
2012-10-07 16:16:39,709 - DEBUG - Taking top 8 variants by coverage in window 9:12248758-12248761
2012-10-07 16:16:39,833 - DEBUG - Taking top 8 variants by coverage in window 9:12249155-12249161
2012-10-07 16:16:39,839 - DEBUG - Taking top 8 variants by coverage in window 9:12249162-12249163
2012-10-07 16:16:41,983 - DEBUG - Taking top 8 variants by coverage in window 9:12294861-12294862
2012-10-07 16:16:43,085 - DEBUG - Taking top 8 variants by coverage in window 9:12306091-12306097
2012-10-07 16:16:44,057 - DEBUG - Taking top 8 variants by coverage in window 9:12314440-12314442
2012-10-07 16:16:44,307 - DEBUG - Taking top 8 variants by coverage in window 9:12316635-12316637
2012-10-07 16:16:44,423 - DEBUG - Taking top 8 variants by coverage in window 9:12316669-12316670
2012-10-07 16:16:45,858 - DEBUG - Taking top 8 variants by coverage in window 9:12342281-12342282
2012-10-07 16:16:46,229 - DEBUG - Taking top 8 variants by coverage in window 9:12346842-12346843
2012-10-07 16:16:46,466 - DEBUG - Taking top 8 variants by coverage in window 9:12350617-12350618
2012-10-07 16:16:47,440 - DEBUG - Taking top 8 variants by coverage in window 9:12367350-12367354
2012-10-07 16:16:47,812 - DEBUG - Taking top 8 variants by coverage in window 9:12373126-12373127
2012-10-07 16:16:47,910 - DEBUG - Taking top 8 variants by coverage in window 9:12380288-12380297
2012-10-07 16:16:47,962 - DEBUG - Taking top 8 variants by coverage in window 9:12380309-12380310
2012-10-07 16:16:47,988 - DEBUG - Taking top 8 variants by coverage in window 9:12380312-12380313
2012-10-07 16:16:48,146 - DEBUG - Taking top 8 variants by coverage in window 9:12380946-12380949
2012-10-07 16:16:48,223 - DEBUG - Taking top 8 variants by coverage in window 9:12380965-12380966
2012-10-07 16:16:48,427 - DEBUG - Taking top 8 variants by coverage in window 9:12385736-12385738
2012-10-07 16:16:48,802 - DEBUG - Taking top 8 variants by coverage in window 9:12390773-12390774
2012-10-07 16:16:49,905 - DEBUG - Taking top 8 variants by coverage in window 9:12407558-12407559
2012-10-07 16:16:50,902 - DEBUG - Taking top 8 variants by coverage in window 9:12424595-12424596
2012-10-07 16:16:53,004 - DEBUG - Taking top 8 variants by coverage in window 9:12455635-12455636
2012-10-07 16:16:54,134 - DEBUG - Taking top 8 variants by coverage in window 9:12468654-12468655
2012-10-07 16:16:54,351 - DEBUG - Taking top 8 variants by coverage in window 9:12475032-12475033
2012-10-07 16:16:54,364 - DEBUG - Taking top 8 variants by coverage in window 9:12475037-12475038
2012-10-07 16:16:54,398 - DEBUG - Taking top 8 variants by coverage in window 9:12475102-12475103
2012-10-07 16:16:55,626 - DEBUG - Taking top 8 variants by coverage in window 9:12491642-12491662
2012-10-07 16:16:56,049 - DEBUG - Taking top 8 variants by coverage in window 9:12499007-12499020
2012-10-07 16:16:56,315 - DEBUG - Taking top 8 variants by coverage in window 9:12500700-12500701
2012-10-07 16:16:56,825 - DEBUG - Taking top 8 variants by coverage in window 9:12507386-12507392
2012-10-07 16:16:57,429 - DEBUG - Taking top 8 variants by coverage in window 9:12524901-12524904
2012-10-07 16:16:59,810 - DEBUG - Taking top 8 variants by coverage in window 9:12558058-12558059
2012-10-07 16:16:59,998 - DEBUG - Taking top 8 variants by coverage in window 9:12561243-12561244
2012-10-07 16:17:01,614 - DEBUG - Taking top 8 variants by coverage in window 9:12583748-12583751
2012-10-07 16:17:01,635 - DEBUG - Taking top 8 variants by coverage in window 9:12583759-12583760
2012-10-07 16:17:01,709 - DEBUG - Taking top 8 variants by coverage in window 9:12584871-12584872
2012-10-07 16:17:01,736 - DEBUG - Taking top 8 variants by coverage in window 9:12584874-12584875
2012-10-07 16:17:02,059 - DEBUG - Taking top 8 variants by coverage in window 9:12590112-12590113
2012-10-07 16:17:02,979 - DEBUG - Taking top 8 variants by coverage in window 9:12610081-12610082
2012-10-07 16:17:03,609 - DEBUG - Taking top 8 variants by coverage in window 9:12614158-12614159
2012-10-07 16:17:04,133 - DEBUG - Taking top 8 variants by coverage in window 9:12621430-12621433
2012-10-07 16:17:04,142 - DEBUG - Taking top 8 variants by coverage in window 9:12621465-12621466
2012-10-07 16:17:04,161 - DEBUG - Taking top 8 variants by coverage in window 9:12621493-12621494
2012-10-07 16:17:04,621 - DEBUG - Taking top 8 variants by coverage in window 9:12627511-12627512
2012-10-07 16:17:05,007 - DEBUG - Taking top 8 variants by coverage in window 9:12632754-12632755
2012-10-07 16:17:05,488 - DEBUG - Taking top 8 variants by coverage in window 9:12642680-12642705
2012-10-07 16:17:05,961 - DEBUG - Taking top 8 variants by coverage in window 9:12652829-12652830
2012-10-07 16:17:06,005 - DEBUG - Taking top 8 variants by coverage in window 9:12652868-12652869
2012-10-07 16:17:07,988 - DEBUG - Taking top 8 variants by coverage in window 9:12675625-12675627
2012-10-07 16:17:08,411 - DEBUG - Taking top 8 variants by coverage in window 9:12682389-12682407
2012-10-07 16:17:09,541 - DEBUG - Taking top 8 variants by coverage in window 9:12695788-12695789
2012-10-07 16:17:11,485 - DEBUG - Taking top 8 variants by coverage in window 9:12722168-12722169
2012-10-07 16:17:12,641 - DEBUG - Taking top 8 variants by coverage in window 9:12736878-12736879
2012-10-07 16:17:12,912 - DEBUG - Taking top 8 variants by coverage in window 9:12746813-12746814
2012-10-07 16:17:13,026 - DEBUG - Taking top 8 variants by coverage in window 9:12747392-12747393
2012-10-07 16:17:13,901 - DEBUG - Taking top 8 variants by coverage in window 9:12757640-12757646
2012-10-07 16:17:13,983 - DEBUG - Taking top 8 variants by coverage in window 9:12757652-12757653
2012-10-07 16:17:14,098 - DEBUG - Taking top 8 variants by coverage in window 9:12759885-12759886
2012-10-07 16:17:14,127 - DEBUG - Taking top 8 variants by coverage in window 9:12760286-12760290
2012-10-07 16:17:15,027 - DEBUG - Taking top 8 variants by coverage in window 9:12764263-12764264
2012-10-07 16:17:15,340 - DEBUG - Taking top 8 variants by coverage in window 9:12768259-12768260
2012-10-07 16:17:15,405 - DEBUG - Taking top 8 variants by coverage in window 9:12774242-12774243
2012-10-07 16:17:16,569 - DEBUG - Taking top 8 variants by coverage in window 9:12789720-12789721
2012-10-07 16:17:17,772 - DEBUG - Taking top 8 variants by coverage in window 9:12808607-12808608
2012-10-07 16:17:17,855 - DEBUG - Taking top 8 variants by coverage in window 9:12808853-12808856
2012-10-07 16:17:18,798 - DEBUG - Taking top 8 variants by coverage in window 9:12820737-12820738
2012-10-07 16:17:19,210 - DEBUG - Taking top 8 variants by coverage in window 9:12823890-12823891
2012-10-07 16:17:19,805 - DEBUG - Taking top 8 variants by coverage in window 9:12829846-12829847
2012-10-07 16:17:19,942 - DEBUG - Taking top 8 variants by coverage in window 9:12830843-12830844
2012-10-07 16:17:20,092 - DEBUG - Taking top 8 variants by coverage in window 9:12834066-12834067
2012-10-07 16:17:20,284 - DEBUG - Taking top 8 variants by coverage in window 9:12836257-12836258
2012-10-07 16:17:21,335 - DEBUG - Taking top 8 variants by coverage in window 9:12866050-12866063
2012-10-07 16:17:21,983 - DEBUG - Taking top 8 variants by coverage in window 9:12878342-12878343
2012-10-07 16:17:22,946 - DEBUG - Taking top 8 variants by coverage in window 9:12896946-12896947
2012-10-07 16:17:23,187 - DEBUG - Taking top 8 variants by coverage in window 9:12898985-12898986
2012-10-07 16:17:23,530 - DEBUG - Taking top 8 variants by coverage in window 9:12903522-12903523
2012-10-07 16:17:23,567 - DEBUG - Taking top 8 variants by coverage in window 9:12903524-12903526
2012-10-07 16:17:23,620 - DEBUG - Taking top 8 variants by coverage in window 9:12904343-12904344
2012-10-07 16:17:23,869 - DEBUG - Taking top 8 variants by coverage in window 9:12906089-12906090
2012-10-07 16:17:24,355 - DEBUG - Taking top 8 variants by coverage in window 9:12911857-12911859
2012-10-07 16:17:24,647 - DEBUG - Taking top 8 variants by coverage in window 9:12914773-12914776
2012-10-07 16:17:25,457 - DEBUG - Taking top 8 variants by coverage in window 9:12932200-12932201
2012-10-07 16:17:26,045 - DEBUG - Taking top 8 variants by coverage in window 9:12945873-12945874
2012-10-07 16:17:26,055 - DEBUG - Taking top 8 variants by coverage in window 9:12945900-12945901
2012-10-07 16:17:28,441 - DEBUG - Taking top 8 variants by coverage in window 9:12974501-12974502
2012-10-07 16:17:28,473 - DEBUG - Taking top 8 variants by coverage in window 9:12974537-12974538
2012-10-07 16:17:29,953 - DEBUG - Taking top 8 variants by coverage in window 9:12993961-12993962
2012-10-07 16:17:31,290 - DEBUG - Read 90780 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 16:17:31,524 - DEBUG - Read 98546 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 16:17:31,777 - DEBUG - Read 114506 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 16:17:32,056 - DEBUG - Read 115182 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 16:17:32,324 - DEBUG - Read 108905 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 16:17:32,565 - DEBUG - Read 103284 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 16:17:32,818 - DEBUG - Read 109316 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 16:17:33,062 - DEBUG - Read 98454 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 16:17:33,291 - DEBUG - Read 94125 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 16:17:33,524 - DEBUG - Read 95425 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 16:17:33,776 - DEBUG - Read 106544 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 16:17:34,002 - DEBUG - Read 95948 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 16:17:34,235 - DEBUG - Read 95943 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 16:17:34,467 - DEBUG - Read 105031 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 16:17:34,725 - DEBUG - Read 113190 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 16:17:34,942 - DEBUG - Read 87313 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 16:17:35,186 - DEBUG - Read 109912 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 16:17:35,434 - DEBUG - Read 105548 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 16:17:35,645 - DEBUG - Read 91294 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 16:17:35,873 - DEBUG - Read 91288 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 16:17:35,974 - DEBUG - Detected 22048 variants in 90780 reads
2012-10-07 16:17:36,138 - DEBUG - Detected 32768 variants in 98546 reads
2012-10-07 16:17:36,370 - DEBUG - Detected 41267 variants in 114506 reads
2012-10-07 16:17:36,625 - DEBUG - Detected 49781 variants in 115182 reads
2012-10-07 16:17:36,921 - DEBUG - Detected 58638 variants in 108905 reads
2012-10-07 16:17:37,248 - DEBUG - Detected 64583 variants in 103284 reads
2012-10-07 16:17:37,622 - DEBUG - Detected 77993 variants in 109316 reads
2012-10-07 16:17:38,043 - DEBUG - Detected 84072 variants in 98454 reads
2012-10-07 16:17:38,533 - DEBUG - Detected 91105 variants in 94125 reads
2012-10-07 16:17:39,012 - DEBUG - Detected 95583 variants in 95425 reads
2012-10-07 16:17:39,519 - DEBUG - Detected 100461 variants in 106544 reads
2012-10-07 16:17:40,046 - DEBUG - Detected 104789 variants in 95948 reads
2012-10-07 16:17:40,591 - DEBUG - Detected 108634 variants in 95943 reads
2012-10-07 16:17:41,168 - DEBUG - Detected 113145 variants in 105031 reads
2012-10-07 16:17:41,826 - DEBUG - Detected 120291 variants in 113190 reads
2012-10-07 16:17:42,429 - DEBUG - Detected 124369 variants in 87313 reads
2012-10-07 16:17:43,037 - DEBUG - Detected 128092 variants in 109912 reads
2012-10-07 16:17:43,657 - DEBUG - Detected 132324 variants in 105548 reads
2012-10-07 16:17:44,285 - DEBUG - Detected 136245 variants in 91294 reads
2012-10-07 16:17:44,975 - DEBUG - Detected 140831 variants in 91288 reads
2012-10-07 16:17:46,305 - DEBUG - Taking top 8 variants by coverage in window 9:13006609-13006617
2012-10-07 16:17:46,778 - DEBUG - Taking top 8 variants by coverage in window 9:13013365-13013366
2012-10-07 16:17:46,826 - DEBUG - Taking top 8 variants by coverage in window 9:13013400-13013401
2012-10-07 16:17:47,885 - DEBUG - Taking top 8 variants by coverage in window 9:13025805-13025806
2012-10-07 16:17:47,924 - DEBUG - Taking top 8 variants by coverage in window 9:13025832-13025833
2012-10-07 16:17:49,689 - DEBUG - Taking top 8 variants by coverage in window 9:13059448-13059449
2012-10-07 16:17:49,799 - DEBUG - Taking top 8 variants by coverage in window 9:13060525-13060527
2012-10-07 16:17:50,169 - DEBUG - Taking top 8 variants by coverage in window 9:13064086-13064087
2012-10-07 16:17:52,003 - DEBUG - Taking top 8 variants by coverage in window 9:13090601-13090602
2012-10-07 16:17:52,204 - DEBUG - Taking top 8 variants by coverage in window 9:13094786-13094787
2012-10-07 16:17:53,196 - DEBUG - Taking top 8 variants by coverage in window 9:13105744-13105745
2012-10-07 16:17:53,825 - DEBUG - Taking top 8 variants by coverage in window 9:13113871-13113872
2012-10-07 16:17:56,099 - DEBUG - Taking top 8 variants by coverage in window 9:13151654-13151655
2012-10-07 16:17:56,510 - DEBUG - Taking top 8 variants by coverage in window 9:13157940-13157941
2012-10-07 16:17:56,522 - DEBUG - Taking top 8 variants by coverage in window 9:13157941-13157944
2012-10-07 16:17:56,611 - DEBUG - Taking top 8 variants by coverage in window 9:13158612-13158613
2012-10-07 16:17:57,223 - DEBUG - Taking top 8 variants by coverage in window 9:13167495-13167497
2012-10-07 16:17:57,293 - DEBUG - Taking top 8 variants by coverage in window 9:13167521-13167522
2012-10-07 16:17:58,644 - DEBUG - Taking top 8 variants by coverage in window 9:13230785-13230786
2012-10-07 16:17:59,388 - DEBUG - Taking top 8 variants by coverage in window 9:13241002-13241003
2012-10-07 16:18:00,180 - DEBUG - Taking top 8 variants by coverage in window 9:13246583-13246589
2012-10-07 16:18:00,222 - DEBUG - Taking top 8 variants by coverage in window 9:13246591-13246601
2012-10-07 16:18:03,430 - DEBUG - Taking top 8 variants by coverage in window 9:13246679-13246687
2012-10-07 16:18:04,671 - DEBUG - Taking top 8 variants by coverage in window 9:13247531-13247543
2012-10-07 16:18:04,722 - DEBUG - Taking top 8 variants by coverage in window 9:13247570-13247581
2012-10-07 16:18:04,891 - DEBUG - Taking top 8 variants by coverage in window 9:13247703-13247710
2012-10-07 16:18:05,117 - DEBUG - Taking top 8 variants by coverage in window 9:13249743-13249744
2012-10-07 16:18:05,145 - DEBUG - Taking top 8 variants by coverage in window 9:13249759-13249760
2012-10-07 16:18:05,364 - DEBUG - Taking top 8 variants by coverage in window 9:13251536-13251537
2012-10-07 16:18:06,301 - DEBUG - Taking top 8 variants by coverage in window 9:13265354-13265355
2012-10-07 16:18:07,534 - DEBUG - Taking top 8 variants by coverage in window 9:13281368-13281369
2012-10-07 16:18:07,544 - DEBUG - Taking top 8 variants by coverage in window 9:13281469-13281470
2012-10-07 16:18:07,709 - DEBUG - Taking top 8 variants by coverage in window 9:13281538-13281543
2012-10-07 16:18:07,960 - DEBUG - Taking top 8 variants by coverage in window 9:13284959-13284960
2012-10-07 16:18:07,966 - DEBUG - Taking top 8 variants by coverage in window 9:13285236-13285237
2012-10-07 16:18:08,067 - DEBUG - Taking top 8 variants by coverage in window 9:13286849-13286850
2012-10-07 16:18:08,276 - DEBUG - Taking top 8 variants by coverage in window 9:13290183-13290185
2012-10-07 16:18:09,068 - DEBUG - Taking top 8 variants by coverage in window 9:13301523-13301524
2012-10-07 16:18:09,137 - DEBUG - Taking top 8 variants by coverage in window 9:13301550-13301553
2012-10-07 16:18:09,238 - DEBUG - Taking top 8 variants by coverage in window 9:13301572-13301575
2012-10-07 16:18:10,457 - DEBUG - Taking top 8 variants by coverage in window 9:13311648-13311649
2012-10-07 16:18:10,716 - DEBUG - Taking top 8 variants by coverage in window 9:13314719-13314720
2012-10-07 16:18:11,089 - DEBUG - Taking top 8 variants by coverage in window 9:13315067-13315068
2012-10-07 16:18:11,131 - DEBUG - Taking top 8 variants by coverage in window 9:13315084-13315085
2012-10-07 16:18:11,330 - DEBUG - Taking top 8 variants by coverage in window 9:13317192-13317198
2012-10-07 16:18:11,540 - DEBUG - Taking top 8 variants by coverage in window 9:13317606-13317607
2012-10-07 16:18:11,559 - DEBUG - Taking top 8 variants by coverage in window 9:13319365-13319366
2012-10-07 16:18:11,676 - DEBUG - Taking top 8 variants by coverage in window 9:13321967-13321968
2012-10-07 16:18:11,810 - DEBUG - Taking top 8 variants by coverage in window 9:13323464-13323465
2012-10-07 16:18:12,373 - DEBUG - Taking top 8 variants by coverage in window 9:13329090-13329091
2012-10-07 16:18:12,598 - DEBUG - Taking top 8 variants by coverage in window 9:13329354-13329355
2012-10-07 16:18:12,682 - DEBUG - Taking top 8 variants by coverage in window 9:13330577-13330578
2012-10-07 16:18:12,905 - DEBUG - Taking top 8 variants by coverage in window 9:13332329-13332337
2012-10-07 16:18:13,015 - DEBUG - Taking top 8 variants by coverage in window 9:13332344-13332345
2012-10-07 16:18:13,205 - DEBUG - Taking top 8 variants by coverage in window 9:13333045-13333046
2012-10-07 16:18:13,229 - DEBUG - Taking top 8 variants by coverage in window 9:13333048-13333049
2012-10-07 16:18:13,716 - DEBUG - Taking top 8 variants by coverage in window 9:13336964-13336966
2012-10-07 16:18:14,551 - DEBUG - Taking top 8 variants by coverage in window 9:13344591-13344592
2012-10-07 16:18:14,592 - DEBUG - Taking top 8 variants by coverage in window 9:13344613-13344614
2012-10-07 16:18:14,673 - DEBUG - Taking top 8 variants by coverage in window 9:13344777-13344785
2012-10-07 16:18:14,714 - DEBUG - Taking top 8 variants by coverage in window 9:13344801-13344802
2012-10-07 16:18:15,246 - DEBUG - Taking top 8 variants by coverage in window 9:13350863-13350864
2012-10-07 16:18:15,357 - DEBUG - Taking top 8 variants by coverage in window 9:13352151-13352152
2012-10-07 16:18:16,027 - DEBUG - Taking top 8 variants by coverage in window 9:13361951-13361952
2012-10-07 16:18:16,403 - DEBUG - Taking top 8 variants by coverage in window 9:13365711-13365712
2012-10-07 16:18:17,129 - DEBUG - Taking top 8 variants by coverage in window 9:13369930-13369939
2012-10-07 16:18:17,246 - DEBUG - Taking top 8 variants by coverage in window 9:13370923-13370931
2012-10-07 16:18:18,016 - DEBUG - Taking top 8 variants by coverage in window 9:13375417-13375418
2012-10-07 16:18:18,052 - DEBUG - Taking top 8 variants by coverage in window 9:13375440-13375441
2012-10-07 16:18:19,742 - DEBUG - Taking top 8 variants by coverage in window 9:13398480-13398481
2012-10-07 16:18:19,773 - DEBUG - Taking top 8 variants by coverage in window 9:13398492-13398493
2012-10-07 16:18:19,931 - DEBUG - Taking top 8 variants by coverage in window 9:13400491-13400492
2012-10-07 16:18:20,304 - DEBUG - Taking top 8 variants by coverage in window 9:13403240-13403241
2012-10-07 16:18:20,726 - DEBUG - Taking top 8 variants by coverage in window 9:13408290-13408291
2012-10-07 16:18:20,989 - DEBUG - Taking top 8 variants by coverage in window 9:13410863-13410864
2012-10-07 16:18:21,086 - DEBUG - Taking top 8 variants by coverage in window 9:13412023-13412031
2012-10-07 16:18:21,989 - DEBUG - Taking top 8 variants by coverage in window 9:13420219-13420221
2012-10-07 16:18:23,789 - DEBUG - Taking top 8 variants by coverage in window 9:13438439-13438445
2012-10-07 16:18:24,318 - DEBUG - Taking top 8 variants by coverage in window 9:13445087-13445088
2012-10-07 16:18:26,110 - DEBUG - Taking top 8 variants by coverage in window 9:13467993-13467994
2012-10-07 16:18:26,489 - DEBUG - Taking top 8 variants by coverage in window 9:13472208-13472209
2012-10-07 16:18:27,797 - DEBUG - Taking top 8 variants by coverage in window 9:13486147-13486148
2012-10-07 16:18:28,047 - DEBUG - Taking top 8 variants by coverage in window 9:13489962-13489963
2012-10-07 16:18:28,156 - DEBUG - Taking top 8 variants by coverage in window 9:13490988-13490989
2012-10-07 16:18:28,211 - DEBUG - Taking top 8 variants by coverage in window 9:13491074-13491075
2012-10-07 16:18:28,241 - DEBUG - Taking top 8 variants by coverage in window 9:13491076-13491078
2012-10-07 16:18:28,439 - DEBUG - Taking top 8 variants by coverage in window 9:13491709-13491710
2012-10-07 16:18:29,262 - DEBUG - Taking top 8 variants by coverage in window 9:13502895-13502906
2012-10-07 16:18:31,466 - DEBUG - Taking top 8 variants by coverage in window 9:13504762-13504763
2012-10-07 16:18:31,931 - DEBUG - Taking top 8 variants by coverage in window 9:13511964-13511965
2012-10-07 16:18:32,543 - DEBUG - Taking top 8 variants by coverage in window 9:13518772-13518776
2012-10-07 16:18:33,395 - DEBUG - Taking top 8 variants by coverage in window 9:13528980-13528982
2012-10-07 16:18:33,434 - DEBUG - Taking top 8 variants by coverage in window 9:13530608-13530609
2012-10-07 16:18:34,889 - DEBUG - Taking top 8 variants by coverage in window 9:13558680-13558683
2012-10-07 16:18:34,967 - DEBUG - Taking top 8 variants by coverage in window 9:13562844-13562845
2012-10-07 16:18:35,593 - DEBUG - Taking top 8 variants by coverage in window 9:13574162-13574163
2012-10-07 16:18:35,685 - DEBUG - Taking top 8 variants by coverage in window 9:13574540-13574541
2012-10-07 16:18:35,830 - DEBUG - Taking top 8 variants by coverage in window 9:13577163-13577164
2012-10-07 16:18:36,846 - DEBUG - Taking top 8 variants by coverage in window 9:13589383-13589384
2012-10-07 16:18:37,227 - DEBUG - Taking top 8 variants by coverage in window 9:13595542-13595546
2012-10-07 16:18:37,248 - DEBUG - Taking top 8 variants by coverage in window 9:13595743-13595747
2012-10-07 16:18:38,199 - DEBUG - Taking top 8 variants by coverage in window 9:13610445-13610447
2012-10-07 16:18:38,690 - DEBUG - Taking top 8 variants by coverage in window 9:13619944-13619945
2012-10-07 16:18:38,707 - DEBUG - Taking top 8 variants by coverage in window 9:13619948-13619949
2012-10-07 16:18:38,828 - DEBUG - Taking top 8 variants by coverage in window 9:13621136-13621137
2012-10-07 16:18:38,986 - DEBUG - Taking top 8 variants by coverage in window 9:13622404-13622405
2012-10-07 16:18:40,517 - DEBUG - Taking top 8 variants by coverage in window 9:13651601-13651602
2012-10-07 16:18:40,808 - DEBUG - Taking top 8 variants by coverage in window 9:13652600-13652601
2012-10-07 16:18:40,996 - DEBUG - Taking top 8 variants by coverage in window 9:13656165-13656183
2012-10-07 16:18:42,861 - DEBUG - Taking top 8 variants by coverage in window 9:13670747-13670748
2012-10-07 16:18:42,928 - DEBUG - Taking top 8 variants by coverage in window 9:13670956-13670962
2012-10-07 16:18:42,964 - DEBUG - Taking top 8 variants by coverage in window 9:13670980-13670982
2012-10-07 16:18:43,483 - DEBUG - Taking top 8 variants by coverage in window 9:13673903-13673904
2012-10-07 16:18:43,794 - DEBUG - Taking top 8 variants by coverage in window 9:13674868-13674880
2012-10-07 16:18:44,268 - DEBUG - Taking top 8 variants by coverage in window 9:13679320-13679321
2012-10-07 16:18:44,586 - DEBUG - Taking top 8 variants by coverage in window 9:13682400-13682414
2012-10-07 16:18:45,830 - DEBUG - Taking top 8 variants by coverage in window 9:13695154-13695155
2012-10-07 16:18:45,964 - DEBUG - Taking top 8 variants by coverage in window 9:13695931-13695932
2012-10-07 16:18:46,135 - DEBUG - Taking top 8 variants by coverage in window 9:13697015-13697023
2012-10-07 16:18:47,278 - DEBUG - Taking top 8 variants by coverage in window 9:13703202-13703220
2012-10-07 16:18:47,664 - DEBUG - Taking top 8 variants by coverage in window 9:13708159-13708160
2012-10-07 16:18:47,895 - DEBUG - Taking top 8 variants by coverage in window 9:13710524-13710525
2012-10-07 16:18:48,081 - DEBUG - Taking top 8 variants by coverage in window 9:13711579-13711580
2012-10-07 16:18:48,556 - DEBUG - Taking top 8 variants by coverage in window 9:13716103-13716105
2012-10-07 16:18:49,061 - DEBUG - Taking top 8 variants by coverage in window 9:13722743-13722754
2012-10-07 16:18:49,077 - DEBUG - Taking top 8 variants by coverage in window 9:13722768-13722770
2012-10-07 16:18:49,532 - DEBUG - Taking top 8 variants by coverage in window 9:13727725-13727726
2012-10-07 16:18:49,717 - DEBUG - Taking top 8 variants by coverage in window 9:13729395-13729396
2012-10-07 16:18:50,776 - DEBUG - Taking top 8 variants by coverage in window 9:13740044-13740048
2012-10-07 16:18:51,133 - DEBUG - Taking top 8 variants by coverage in window 9:13742407-13742409
2012-10-07 16:18:51,639 - DEBUG - Taking top 8 variants by coverage in window 9:13750247-13750248
2012-10-07 16:18:51,721 - DEBUG - Taking top 8 variants by coverage in window 9:13750380-13750381
2012-10-07 16:18:52,770 - DEBUG - Taking top 8 variants by coverage in window 9:13761936-13761937
2012-10-07 16:18:54,236 - DEBUG - Taking top 8 variants by coverage in window 9:13777664-13777665
2012-10-07 16:18:55,369 - DEBUG - Taking top 8 variants by coverage in window 9:13787073-13787074
2012-10-07 16:18:55,658 - DEBUG - Taking top 8 variants by coverage in window 9:13790208-13790209
2012-10-07 16:18:55,829 - DEBUG - Taking top 8 variants by coverage in window 9:13791605-13791613
2012-10-07 16:18:58,440 - DEBUG - Taking top 8 variants by coverage in window 9:13813143-13813148
2012-10-07 16:18:58,564 - DEBUG - Taking top 8 variants by coverage in window 9:13813163-13813164
2012-10-07 16:18:58,666 - DEBUG - Taking top 8 variants by coverage in window 9:13814382-13814383
2012-10-07 16:18:58,741 - DEBUG - Taking top 8 variants by coverage in window 9:13814697-13814698
2012-10-07 16:18:59,385 - DEBUG - Taking top 8 variants by coverage in window 9:13820329-13820333
2012-10-07 16:18:59,878 - DEBUG - Taking top 8 variants by coverage in window 9:13826263-13826264
2012-10-07 16:19:00,370 - DEBUG - Taking top 8 variants by coverage in window 9:13829802-13829803
2012-10-07 16:19:00,402 - DEBUG - Taking top 8 variants by coverage in window 9:13829813-13829814
2012-10-07 16:19:00,961 - DEBUG - Taking top 8 variants by coverage in window 9:13833141-13833143
2012-10-07 16:19:01,033 - DEBUG - Taking top 8 variants by coverage in window 9:13834076-13834077
2012-10-07 16:19:02,124 - DEBUG - Taking top 8 variants by coverage in window 9:13848889-13848890
2012-10-07 16:19:02,329 - DEBUG - Taking top 8 variants by coverage in window 9:13853869-13853870
2012-10-07 16:19:02,733 - DEBUG - Taking top 8 variants by coverage in window 9:13860530-13860533
2012-10-07 16:19:02,957 - DEBUG - Taking top 8 variants by coverage in window 9:13861537-13861538
2012-10-07 16:19:03,722 - DEBUG - Taking top 8 variants by coverage in window 9:13873557-13873558
2012-10-07 16:19:03,789 - DEBUG - Taking top 8 variants by coverage in window 9:13874934-13874935
2012-10-07 16:19:03,952 - DEBUG - Taking top 8 variants by coverage in window 9:13876892-13876893
2012-10-07 16:19:05,020 - DEBUG - Taking top 8 variants by coverage in window 9:13892453-13892454
2012-10-07 16:19:05,484 - DEBUG - Taking top 8 variants by coverage in window 9:13898754-13898765
2012-10-07 16:19:05,498 - DEBUG - Taking top 8 variants by coverage in window 9:13898767-13898774
2012-10-07 16:19:05,994 - DEBUG - Taking top 8 variants by coverage in window 9:13899435-13899437
2012-10-07 16:19:06,014 - DEBUG - Taking top 8 variants by coverage in window 9:13906434-13906437
2012-10-07 16:19:06,220 - DEBUG - Taking top 8 variants by coverage in window 9:13908688-13908689
2012-10-07 16:19:06,227 - DEBUG - Taking top 8 variants by coverage in window 9:13908689-13908690
2012-10-07 16:19:06,796 - DEBUG - Taking top 8 variants by coverage in window 9:13914473-13914474
2012-10-07 16:19:06,965 - DEBUG - Taking top 8 variants by coverage in window 9:13914813-13914815
2012-10-07 16:19:07,051 - DEBUG - Taking top 8 variants by coverage in window 9:13914868-13914869
2012-10-07 16:19:07,510 - DEBUG - Taking top 8 variants by coverage in window 9:13918884-13918885
2012-10-07 16:19:07,763 - DEBUG - Taking top 8 variants by coverage in window 9:13921848-13921849
2012-10-07 16:19:07,903 - DEBUG - Taking top 8 variants by coverage in window 9:13922772-13922773
2012-10-07 16:19:07,981 - DEBUG - Taking top 8 variants by coverage in window 9:13923139-13923140
2012-10-07 16:19:08,165 - DEBUG - Taking top 8 variants by coverage in window 9:13924107-13924108
2012-10-07 16:19:08,637 - DEBUG - Taking top 8 variants by coverage in window 9:13926535-13926539
2012-10-07 16:19:09,679 - DEBUG - Taking top 8 variants by coverage in window 9:13933866-13933867
2012-10-07 16:19:09,708 - DEBUG - Taking top 8 variants by coverage in window 9:13933872-13933874
2012-10-07 16:19:11,125 - DEBUG - Taking top 8 variants by coverage in window 9:13947057-13947059
2012-10-07 16:19:11,170 - DEBUG - Taking top 8 variants by coverage in window 9:13947067-13947068
2012-10-07 16:19:11,495 - DEBUG - Taking top 8 variants by coverage in window 9:13949483-13949484
2012-10-07 16:19:13,973 - DEBUG - Taking top 8 variants by coverage in window 9:13976589-13976592
2012-10-07 16:19:14,141 - DEBUG - Taking top 8 variants by coverage in window 9:13979112-13979113
2012-10-07 16:19:14,420 - DEBUG - Taking top 8 variants by coverage in window 9:13980986-13980987
2012-10-07 16:19:14,454 - DEBUG - Taking top 8 variants by coverage in window 9:13981242-13981243
2012-10-07 16:19:14,466 - DEBUG - Taking top 8 variants by coverage in window 9:13981262-13981263
2012-10-07 16:19:14,514 - DEBUG - Taking top 8 variants by coverage in window 9:13981496-13981497
2012-10-07 16:19:14,596 - DEBUG - Taking top 8 variants by coverage in window 9:13982055-13982056
2012-10-07 16:19:14,682 - DEBUG - Taking top 8 variants by coverage in window 9:13982800-13982805
2012-10-07 16:19:14,769 - DEBUG - Taking top 8 variants by coverage in window 9:13982809-13982817
2012-10-07 16:19:15,472 - DEBUG - Taking top 8 variants by coverage in window 9:13987521-13987526
2012-10-07 16:19:16,083 - DEBUG - Taking top 8 variants by coverage in window 9:13995303-13995304
2012-10-07 16:19:16,335 - DEBUG - Taking top 8 variants by coverage in window 9:13996239-13996243
2012-10-07 16:19:17,695 - DEBUG - Taking top 8 variants by coverage in window 9:13998067-13998070
2012-10-07 16:19:17,975 - DEBUG - Taking top 8 variants by coverage in window 9:13998073-13998080
2012-10-07 16:19:18,331 - DEBUG - Taking top 8 variants by coverage in window 9:13998088-13998091
2012-10-07 16:19:19,134 - DEBUG - Taking top 8 variants by coverage in window 9:13998108-13998110
2012-10-07 16:19:19,264 - DEBUG - Taking top 8 variants by coverage in window 9:13998111-13998115
2012-10-07 16:19:19,841 - DEBUG - Taking top 8 variants by coverage in window 9:13998137-13998140
2012-10-07 16:19:20,168 - DEBUG - Taking top 8 variants by coverage in window 9:13998164-13998166
2012-10-07 16:19:20,236 - DEBUG - Taking top 8 variants by coverage in window 9:13998168-13998171
2012-10-07 16:19:20,361 - DEBUG - Taking top 8 variants by coverage in window 9:13998172-13998173
2012-10-07 16:19:20,680 - DEBUG - Taking top 8 variants by coverage in window 9:13998198-13998203
2012-10-07 16:19:20,998 - DEBUG - Taking top 8 variants by coverage in window 9:13998212-13998213
2012-10-07 16:19:22,465 - DEBUG - Read 104212 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 16:19:22,732 - DEBUG - Read 112820 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 16:19:23,019 - DEBUG - Read 129563 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 16:19:23,343 - DEBUG - Read 132985 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 16:19:23,646 - DEBUG - Read 124219 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 16:19:23,912 - DEBUG - Read 117431 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 16:19:24,191 - DEBUG - Read 124487 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 16:19:24,469 - DEBUG - Read 114405 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 16:19:24,727 - DEBUG - Read 109369 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 16:19:24,986 - DEBUG - Read 106434 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 16:19:25,270 - DEBUG - Read 121167 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 16:19:25,524 - DEBUG - Read 110022 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 16:19:25,790 - DEBUG - Read 111626 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 16:19:26,054 - DEBUG - Read 120930 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 16:19:26,347 - DEBUG - Read 131597 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 16:19:26,598 - DEBUG - Read 103444 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 16:19:26,876 - DEBUG - Read 126949 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 16:19:27,155 - DEBUG - Read 120159 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 16:19:27,397 - DEBUG - Read 106049 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 16:19:27,766 - DEBUG - Read 104496 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 16:19:27,883 - DEBUG - Detected 23051 variants in 104212 reads
2012-10-07 16:19:28,083 - DEBUG - Detected 33640 variants in 112820 reads
2012-10-07 16:19:28,331 - DEBUG - Detected 43519 variants in 129563 reads
2012-10-07 16:19:28,625 - DEBUG - Detected 52373 variants in 132985 reads
2012-10-07 16:19:28,950 - DEBUG - Detected 59728 variants in 124219 reads
2012-10-07 16:19:29,309 - DEBUG - Detected 66686 variants in 117431 reads
2012-10-07 16:19:29,719 - DEBUG - Detected 81450 variants in 124487 reads
2012-10-07 16:19:30,224 - DEBUG - Detected 87239 variants in 114405 reads
2012-10-07 16:19:30,724 - DEBUG - Detected 93173 variants in 109369 reads
2012-10-07 16:19:31,243 - DEBUG - Detected 98354 variants in 106434 reads
2012-10-07 16:19:31,802 - DEBUG - Detected 103786 variants in 121167 reads
2012-10-07 16:19:32,380 - DEBUG - Detected 108108 variants in 110022 reads
2012-10-07 16:19:32,982 - DEBUG - Detected 112708 variants in 111626 reads
2012-10-07 16:19:33,667 - DEBUG - Detected 117218 variants in 120930 reads
2012-10-07 16:19:34,336 - DEBUG - Detected 125008 variants in 131597 reads
2012-10-07 16:19:35,012 - DEBUG - Detected 129146 variants in 103444 reads
2012-10-07 16:19:35,737 - DEBUG - Detected 133482 variants in 126949 reads
2012-10-07 16:19:36,473 - DEBUG - Detected 138679 variants in 120159 reads
2012-10-07 16:19:37,296 - DEBUG - Detected 143458 variants in 106049 reads
2012-10-07 16:19:38,070 - DEBUG - Detected 148274 variants in 104496 reads
2012-10-07 16:19:39,856 - DEBUG - Taking top 8 variants by coverage in window 9:14008410-14008411
2012-10-07 16:19:39,988 - DEBUG - Taking top 8 variants by coverage in window 9:14009814-14009816
2012-10-07 16:19:40,157 - DEBUG - Taking top 8 variants by coverage in window 9:14010923-14010925
2012-10-07 16:19:40,192 - DEBUG - Taking top 8 variants by coverage in window 9:14011682-14011690
2012-10-07 16:19:40,641 - DEBUG - Taking top 8 variants by coverage in window 9:14020623-14020624
2012-10-07 16:19:40,965 - DEBUG - Taking top 8 variants by coverage in window 9:14023101-14023102
2012-10-07 16:19:41,037 - DEBUG - Taking top 8 variants by coverage in window 9:14023213-14023214
2012-10-07 16:19:41,499 - DEBUG - Taking top 8 variants by coverage in window 9:14028558-14028559
2012-10-07 16:19:42,011 - DEBUG - Taking top 8 variants by coverage in window 9:14036049-14036050
2012-10-07 16:19:42,285 - DEBUG - Taking top 8 variants by coverage in window 9:14038679-14038680
2012-10-07 16:19:43,669 - DEBUG - Taking top 8 variants by coverage in window 9:14065610-14065615
2012-10-07 16:19:43,956 - DEBUG - Taking top 8 variants by coverage in window 9:14071466-14071467
2012-10-07 16:19:44,083 - DEBUG - Taking top 8 variants by coverage in window 9:14073094-14073095
2012-10-07 16:19:45,341 - DEBUG - Taking top 8 variants by coverage in window 9:14101715-14101721
2012-10-07 16:19:45,426 - DEBUG - Taking top 8 variants by coverage in window 9:14102008-14102009
2012-10-07 16:19:45,725 - DEBUG - Taking top 8 variants by coverage in window 9:14107388-14107389
2012-10-07 16:19:46,066 - DEBUG - Taking top 8 variants by coverage in window 9:14113232-14113233
2012-10-07 16:19:47,056 - DEBUG - Taking top 8 variants by coverage in window 9:14131024-14131029
2012-10-07 16:19:47,362 - DEBUG - Taking top 8 variants by coverage in window 9:14138233-14138234
2012-10-07 16:19:47,573 - DEBUG - Taking top 8 variants by coverage in window 9:14141156-14141157
2012-10-07 16:19:47,724 - DEBUG - Taking top 8 variants by coverage in window 9:14142131-14142132
2012-10-07 16:19:47,774 - DEBUG - Taking top 8 variants by coverage in window 9:14142167-14142168
2012-10-07 16:19:47,998 - DEBUG - Taking top 8 variants by coverage in window 9:14145040-14145041
2012-10-07 16:19:48,020 - DEBUG - Taking top 8 variants by coverage in window 9:14145041-14145044
2012-10-07 16:19:48,078 - DEBUG - Taking top 8 variants by coverage in window 9:14145055-14145056
2012-10-07 16:19:48,419 - DEBUG - Taking top 8 variants by coverage in window 9:14147088-14147089
2012-10-07 16:19:48,895 - DEBUG - Taking top 8 variants by coverage in window 9:14152457-14152463
2012-10-07 16:19:49,055 - DEBUG - Taking top 8 variants by coverage in window 9:14152660-14152661
2012-10-07 16:19:49,540 - DEBUG - Taking top 8 variants by coverage in window 9:14163532-14163533
2012-10-07 16:19:49,640 - DEBUG - Taking top 8 variants by coverage in window 9:14165482-14165483
2012-10-07 16:19:50,330 - DEBUG - Taking top 8 variants by coverage in window 9:14177830-14177833
2012-10-07 16:19:50,439 - DEBUG - Taking top 8 variants by coverage in window 9:14177847-14177848
2012-10-07 16:19:50,744 - DEBUG - Taking top 8 variants by coverage in window 9:14181528-14181529
2012-10-07 16:19:50,803 - DEBUG - Taking top 8 variants by coverage in window 9:14182065-14182066
2012-10-07 16:19:50,871 - DEBUG - Taking top 8 variants by coverage in window 9:14182698-14182699
2012-10-07 16:19:50,916 - DEBUG - Taking top 8 variants by coverage in window 9:14182700-14182701
2012-10-07 16:19:51,122 - DEBUG - Taking top 8 variants by coverage in window 9:14186507-14186508
2012-10-07 16:19:51,185 - DEBUG - Taking top 8 variants by coverage in window 9:14186644-14186645
2012-10-07 16:19:51,244 - DEBUG - Taking top 8 variants by coverage in window 9:14186690-14186691
2012-10-07 16:19:51,255 - DEBUG - Taking top 8 variants by coverage in window 9:14186691-14186693
2012-10-07 16:19:51,504 - DEBUG - Taking top 8 variants by coverage in window 9:14189258-14189259
2012-10-07 16:19:51,539 - DEBUG - Taking top 8 variants by coverage in window 9:14189662-14189663
2012-10-07 16:19:51,896 - DEBUG - Taking top 8 variants by coverage in window 9:14194485-14194487
2012-10-07 16:19:52,151 - DEBUG - Taking top 8 variants by coverage in window 9:14196846-14196847
2012-10-07 16:19:52,479 - DEBUG - Taking top 8 variants by coverage in window 9:14201286-14201292
2012-10-07 16:19:52,913 - DEBUG - Taking top 8 variants by coverage in window 9:14205697-14205701
2012-10-07 16:19:53,248 - DEBUG - Taking top 8 variants by coverage in window 9:14208308-14208309
2012-10-07 16:19:53,598 - DEBUG - Taking top 8 variants by coverage in window 9:14211692-14211693
2012-10-07 16:19:53,749 - DEBUG - Taking top 8 variants by coverage in window 9:14212167-14212168
2012-10-07 16:19:54,363 - DEBUG - Taking top 8 variants by coverage in window 9:14222496-14222497
2012-10-07 16:19:55,908 - DEBUG - Taking top 8 variants by coverage in window 9:14249482-14249494
2012-10-07 16:19:56,722 - DEBUG - Taking top 8 variants by coverage in window 9:14251446-14251447
2012-10-07 16:19:56,976 - DEBUG - Taking top 8 variants by coverage in window 9:14256497-14256498
2012-10-07 16:19:57,078 - DEBUG - Taking top 8 variants by coverage in window 9:14257355-14257356
2012-10-07 16:19:57,137 - DEBUG - Taking top 8 variants by coverage in window 9:14258249-14258260
2012-10-07 16:19:57,439 - DEBUG - Taking top 8 variants by coverage in window 9:14265408-14265412
2012-10-07 16:19:58,828 - DEBUG - Taking top 8 variants by coverage in window 9:14296202-14296203
2012-10-07 16:19:59,591 - DEBUG - Taking top 8 variants by coverage in window 9:14302013-14302014
2012-10-07 16:19:59,627 - DEBUG - Taking top 8 variants by coverage in window 9:14302064-14302065
2012-10-07 16:20:00,574 - DEBUG - Taking top 8 variants by coverage in window 9:14320984-14320985
2012-10-07 16:20:00,835 - DEBUG - Taking top 8 variants by coverage in window 9:14324942-14324943
2012-10-07 16:20:00,877 - DEBUG - Taking top 8 variants by coverage in window 9:14324956-14324957
2012-10-07 16:20:01,939 - DEBUG - Taking top 8 variants by coverage in window 9:14335910-14335911
2012-10-07 16:20:02,835 - DEBUG - Taking top 8 variants by coverage in window 9:14347455-14347463
2012-10-07 16:20:03,003 - DEBUG - Taking top 8 variants by coverage in window 9:14347894-14347895
2012-10-07 16:20:03,246 - DEBUG - Taking top 8 variants by coverage in window 9:14351774-14351775
2012-10-07 16:20:03,450 - DEBUG - Taking top 8 variants by coverage in window 9:14354114-14354127
2012-10-07 16:20:03,486 - DEBUG - Taking top 8 variants by coverage in window 9:14354591-14354595
2012-10-07 16:20:03,608 - DEBUG - Taking top 8 variants by coverage in window 9:14355845-14355853
2012-10-07 16:20:04,725 - DEBUG - Taking top 8 variants by coverage in window 9:14366780-14366781
2012-10-07 16:20:04,774 - DEBUG - Taking top 8 variants by coverage in window 9:14366794-14366795
2012-10-07 16:20:05,037 - DEBUG - Taking top 8 variants by coverage in window 9:14368480-14368482
2012-10-07 16:20:05,327 - DEBUG - Taking top 8 variants by coverage in window 9:14370756-14370757
2012-10-07 16:20:05,547 - DEBUG - Taking top 8 variants by coverage in window 9:14371770-14371771
2012-10-07 16:20:05,928 - DEBUG - Taking top 8 variants by coverage in window 9:14374436-14374437
2012-10-07 16:20:06,363 - DEBUG - Taking top 8 variants by coverage in window 9:14376932-14376938
2012-10-07 16:20:06,522 - DEBUG - Taking top 8 variants by coverage in window 9:14376958-14376968
2012-10-07 16:20:07,953 - DEBUG - Taking top 8 variants by coverage in window 9:14376994-14377002
2012-10-07 16:20:08,638 - DEBUG - Taking top 8 variants by coverage in window 9:14383847-14383848
2012-10-07 16:20:08,812 - DEBUG - Taking top 8 variants by coverage in window 9:14385794-14385795
2012-10-07 16:20:09,558 - DEBUG - Taking top 8 variants by coverage in window 9:14396381-14396383
2012-10-07 16:20:09,762 - DEBUG - Taking top 8 variants by coverage in window 9:14396970-14396971
2012-10-07 16:20:10,075 - DEBUG - Taking top 8 variants by coverage in window 9:14400582-14400583
2012-10-07 16:20:10,214 - DEBUG - Taking top 8 variants by coverage in window 9:14401599-14401601
2012-10-07 16:20:11,465 - DEBUG - Taking top 8 variants by coverage in window 9:14411206-14411207
2012-10-07 16:20:11,573 - DEBUG - Taking top 8 variants by coverage in window 9:14411741-14411742
2012-10-07 16:20:12,090 - DEBUG - Taking top 8 variants by coverage in window 9:14414375-14414376
2012-10-07 16:20:13,500 - DEBUG - Taking top 8 variants by coverage in window 9:14429211-14429232
2012-10-07 16:20:14,660 - DEBUG - Taking top 8 variants by coverage in window 9:14443843-14443845
2012-10-07 16:20:14,681 - DEBUG - Taking top 8 variants by coverage in window 9:14443860-14443861
2012-10-07 16:20:14,841 - DEBUG - Taking top 8 variants by coverage in window 9:14445815-14445816
2012-10-07 16:20:15,545 - DEBUG - Taking top 8 variants by coverage in window 9:14454833-14454834
2012-10-07 16:20:15,659 - DEBUG - Taking top 8 variants by coverage in window 9:14455708-14455709
2012-10-07 16:20:15,755 - DEBUG - Taking top 8 variants by coverage in window 9:14456391-14456399
2012-10-07 16:20:15,807 - DEBUG - Taking top 8 variants by coverage in window 9:14456408-14456409
2012-10-07 16:20:16,299 - DEBUG - Taking top 8 variants by coverage in window 9:14461457-14461458
2012-10-07 16:20:17,573 - DEBUG - Taking top 8 variants by coverage in window 9:14480132-14480133
2012-10-07 16:20:18,041 - DEBUG - Taking top 8 variants by coverage in window 9:14485583-14485584
2012-10-07 16:20:18,200 - DEBUG - Taking top 8 variants by coverage in window 9:14487317-14487318
2012-10-07 16:20:18,212 - DEBUG - Taking top 8 variants by coverage in window 9:14487322-14487323
2012-10-07 16:20:18,342 - DEBUG - Taking top 8 variants by coverage in window 9:14489193-14489194
2012-10-07 16:20:18,447 - DEBUG - Taking top 8 variants by coverage in window 9:14490549-14490551
2012-10-07 16:20:18,563 - DEBUG - Taking top 8 variants by coverage in window 9:14491345-14491346
2012-10-07 16:20:18,724 - DEBUG - Taking top 8 variants by coverage in window 9:14492722-14492736
2012-10-07 16:20:18,776 - DEBUG - Taking top 8 variants by coverage in window 9:14492810-14492820
2012-10-07 16:20:20,162 - DEBUG - Taking top 8 variants by coverage in window 9:14500452-14500454
2012-10-07 16:20:20,203 - DEBUG - Taking top 8 variants by coverage in window 9:14500512-14500515
2012-10-07 16:20:21,187 - DEBUG - Taking top 8 variants by coverage in window 9:14509262-14509263
2012-10-07 16:20:21,269 - DEBUG - Taking top 8 variants by coverage in window 9:14509283-14509284
2012-10-07 16:20:21,565 - DEBUG - Taking top 8 variants by coverage in window 9:14511549-14511550
2012-10-07 16:20:21,706 - DEBUG - Taking top 8 variants by coverage in window 9:14512563-14512564
2012-10-07 16:20:21,754 - DEBUG - Taking top 8 variants by coverage in window 9:14512747-14512758
2012-10-07 16:20:21,829 - DEBUG - Taking top 8 variants by coverage in window 9:14512769-14512775
2012-10-07 16:20:21,896 - DEBUG - Taking top 8 variants by coverage in window 9:14512814-14512822
2012-10-07 16:20:21,913 - DEBUG - Taking top 8 variants by coverage in window 9:14512824-14512826
2012-10-07 16:20:25,009 - DEBUG - Taking top 8 variants by coverage in window 9:14550461-14550462
2012-10-07 16:20:25,057 - DEBUG - Taking top 8 variants by coverage in window 9:14550525-14550526
2012-10-07 16:20:25,198 - DEBUG - Taking top 8 variants by coverage in window 9:14551147-14551148
2012-10-07 16:20:26,021 - DEBUG - Taking top 8 variants by coverage in window 9:14557176-14557178
2012-10-07 16:20:26,194 - DEBUG - Taking top 8 variants by coverage in window 9:14558770-14558772
2012-10-07 16:20:26,466 - DEBUG - Taking top 8 variants by coverage in window 9:14560304-14560306
2012-10-07 16:20:27,495 - DEBUG - Taking top 8 variants by coverage in window 9:14567708-14567709
2012-10-07 16:20:27,777 - DEBUG - Taking top 8 variants by coverage in window 9:14570305-14570318
2012-10-07 16:20:27,835 - DEBUG - Taking top 8 variants by coverage in window 9:14570388-14570389
2012-10-07 16:20:27,951 - DEBUG - Taking top 8 variants by coverage in window 9:14571476-14571477
2012-10-07 16:20:28,012 - DEBUG - Taking top 8 variants by coverage in window 9:14572187-14572188
2012-10-07 16:20:28,535 - DEBUG - Taking top 8 variants by coverage in window 9:14582199-14582200
2012-10-07 16:20:28,648 - DEBUG - Taking top 8 variants by coverage in window 9:14583980-14583981
2012-10-07 16:20:29,026 - DEBUG - Taking top 8 variants by coverage in window 9:14592223-14592224
2012-10-07 16:20:29,668 - DEBUG - Taking top 8 variants by coverage in window 9:14604661-14604662
2012-10-07 16:20:29,782 - DEBUG - Taking top 8 variants by coverage in window 9:14605914-14605924
2012-10-07 16:20:30,256 - DEBUG - Taking top 8 variants by coverage in window 9:14611163-14611164
2012-10-07 16:20:30,346 - DEBUG - Taking top 8 variants by coverage in window 9:14612013-14612016
2012-10-07 16:20:30,496 - DEBUG - Taking top 8 variants by coverage in window 9:14612864-14612865
2012-10-07 16:20:30,704 - DEBUG - Taking top 8 variants by coverage in window 9:14615051-14615053
2012-10-07 16:20:32,393 - DEBUG - Taking top 8 variants by coverage in window 9:14637505-14637515
2012-10-07 16:20:32,989 - DEBUG - Taking top 8 variants by coverage in window 9:14642772-14642774
2012-10-07 16:20:33,304 - DEBUG - Taking top 8 variants by coverage in window 9:14646264-14646265
2012-10-07 16:20:33,865 - DEBUG - Taking top 8 variants by coverage in window 9:14652523-14652524
2012-10-07 16:20:34,255 - DEBUG - Taking top 8 variants by coverage in window 9:14658047-14658048
2012-10-07 16:20:34,435 - DEBUG - Taking top 8 variants by coverage in window 9:14659732-14659735
2012-10-07 16:20:35,210 - DEBUG - Taking top 8 variants by coverage in window 9:14666159-14666167
2012-10-07 16:20:35,475 - DEBUG - Taking top 8 variants by coverage in window 9:14669345-14669346
2012-10-07 16:20:35,771 - DEBUG - Taking top 8 variants by coverage in window 9:14672612-14672613
2012-10-07 16:20:35,885 - DEBUG - Taking top 8 variants by coverage in window 9:14673983-14673984
2012-10-07 16:20:36,077 - DEBUG - Taking top 8 variants by coverage in window 9:14676306-14676307
2012-10-07 16:20:37,885 - DEBUG - Taking top 8 variants by coverage in window 9:14687362-14687371
2012-10-07 16:20:38,059 - DEBUG - Taking top 8 variants by coverage in window 9:14687485-14687486
2012-10-07 16:20:38,546 - DEBUG - Taking top 8 variants by coverage in window 9:14692432-14692443
2012-10-07 16:20:39,071 - DEBUG - Taking top 8 variants by coverage in window 9:14696889-14696890
2012-10-07 16:20:39,463 - DEBUG - Taking top 8 variants by coverage in window 9:14702650-14702651
2012-10-07 16:20:40,138 - DEBUG - Taking top 8 variants by coverage in window 9:14713173-14713175
2012-10-07 16:20:40,211 - DEBUG - Taking top 8 variants by coverage in window 9:14714355-14714356
2012-10-07 16:20:40,911 - DEBUG - Taking top 8 variants by coverage in window 9:14721110-14721111
2012-10-07 16:20:41,163 - DEBUG - Taking top 8 variants by coverage in window 9:14725475-14725476
2012-10-07 16:20:41,734 - DEBUG - Taking top 8 variants by coverage in window 9:14729225-14729238
2012-10-07 16:20:41,782 - DEBUG - Taking top 8 variants by coverage in window 9:14729267-14729268
2012-10-07 16:20:41,824 - DEBUG - Taking top 8 variants by coverage in window 9:14729271-14729272
2012-10-07 16:20:42,062 - DEBUG - Taking top 8 variants by coverage in window 9:14729638-14729639
2012-10-07 16:20:42,889 - DEBUG - Taking top 8 variants by coverage in window 9:14740530-14740539
2012-10-07 16:20:43,017 - DEBUG - Taking top 8 variants by coverage in window 9:14742019-14742020
2012-10-07 16:20:44,630 - DEBUG - Taking top 8 variants by coverage in window 9:14762512-14762518
2012-10-07 16:20:45,200 - DEBUG - Taking top 8 variants by coverage in window 9:14768094-14768095
2012-10-07 16:20:45,646 - DEBUG - Taking top 8 variants by coverage in window 9:14770600-14770601
2012-10-07 16:20:46,227 - DEBUG - Taking top 8 variants by coverage in window 9:14776458-14776467
2012-10-07 16:20:46,464 - DEBUG - Taking top 8 variants by coverage in window 9:14778712-14778713
2012-10-07 16:20:47,115 - DEBUG - Taking top 8 variants by coverage in window 9:14783999-14784002
2012-10-07 16:20:47,406 - DEBUG - Taking top 8 variants by coverage in window 9:14787100-14787101
2012-10-07 16:20:47,769 - DEBUG - Taking top 8 variants by coverage in window 9:14789904-14789905
2012-10-07 16:20:47,986 - DEBUG - Taking top 8 variants by coverage in window 9:14792886-14792887
2012-10-07 16:20:50,428 - DEBUG - Taking top 8 variants by coverage in window 9:14796380-14796392
2012-10-07 16:20:50,687 - DEBUG - Taking top 8 variants by coverage in window 9:14798596-14798604
2012-10-07 16:20:52,322 - DEBUG - Taking top 8 variants by coverage in window 9:14816805-14816806
2012-10-07 16:20:52,390 - DEBUG - Taking top 8 variants by coverage in window 9:14817301-14817308
2012-10-07 16:20:53,221 - DEBUG - Taking top 8 variants by coverage in window 9:14823601-14823602
2012-10-07 16:20:53,826 - DEBUG - Taking top 8 variants by coverage in window 9:14826322-14826323
2012-10-07 16:20:53,941 - DEBUG - Taking top 8 variants by coverage in window 9:14826870-14826873
2012-10-07 16:20:54,125 - DEBUG - Taking top 8 variants by coverage in window 9:14827611-14827612
2012-10-07 16:20:54,247 - DEBUG - Taking top 8 variants by coverage in window 9:14828307-14828312
2012-10-07 16:20:54,761 - DEBUG - Taking top 8 variants by coverage in window 9:14833510-14833511
2012-10-07 16:20:55,065 - DEBUG - Taking top 8 variants by coverage in window 9:14836817-14836830
2012-10-07 16:20:55,212 - DEBUG - Taking top 8 variants by coverage in window 9:14837325-14837335
2012-10-07 16:20:55,476 - DEBUG - Taking top 8 variants by coverage in window 9:14839533-14839534
2012-10-07 16:20:55,701 - DEBUG - Taking top 8 variants by coverage in window 9:14841918-14841925
2012-10-07 16:20:56,174 - DEBUG - Taking top 8 variants by coverage in window 9:14845355-14845356
2012-10-07 16:20:56,463 - DEBUG - Taking top 8 variants by coverage in window 9:14848650-14848651
2012-10-07 16:20:56,779 - DEBUG - Taking top 8 variants by coverage in window 9:14852334-14852335
2012-10-07 16:20:57,923 - DEBUG - Taking top 8 variants by coverage in window 9:14862072-14862073
2012-10-07 16:20:58,526 - DEBUG - Taking top 8 variants by coverage in window 9:14868184-14868185
2012-10-07 16:20:58,540 - DEBUG - Taking top 8 variants by coverage in window 9:14868211-14868212
2012-10-07 16:20:58,619 - DEBUG - Taking top 8 variants by coverage in window 9:14869080-14869081
2012-10-07 16:20:59,027 - DEBUG - Taking top 8 variants by coverage in window 9:14874585-14874586
2012-10-07 16:20:59,318 - DEBUG - Taking top 8 variants by coverage in window 9:14876725-14876726
2012-10-07 16:20:59,406 - DEBUG - Taking top 8 variants by coverage in window 9:14876788-14876789
2012-10-07 16:20:59,731 - DEBUG - Taking top 8 variants by coverage in window 9:14880491-14880492
2012-10-07 16:20:59,922 - DEBUG - Taking top 8 variants by coverage in window 9:14884847-14884848
2012-10-07 16:21:00,097 - DEBUG - Taking top 8 variants by coverage in window 9:14888122-14888123
2012-10-07 16:21:00,643 - DEBUG - Taking top 8 variants by coverage in window 9:14893750-14893751
2012-10-07 16:21:01,225 - DEBUG - Taking top 8 variants by coverage in window 9:14899750-14899751
2012-10-07 16:21:01,305 - DEBUG - Taking top 8 variants by coverage in window 9:14900164-14900165
2012-10-07 16:21:01,636 - DEBUG - Taking top 8 variants by coverage in window 9:14903106-14903107
2012-10-07 16:21:02,127 - DEBUG - Taking top 8 variants by coverage in window 9:14909296-14909301
2012-10-07 16:21:03,276 - DEBUG - Taking top 8 variants by coverage in window 9:14926541-14926542
2012-10-07 16:21:03,714 - DEBUG - Taking top 8 variants by coverage in window 9:14932073-14932074
2012-10-07 16:21:04,069 - DEBUG - Taking top 8 variants by coverage in window 9:14936770-14936771
2012-10-07 16:21:04,943 - DEBUG - Taking top 8 variants by coverage in window 9:14940571-14940583
2012-10-07 16:21:05,992 - DEBUG - Taking top 8 variants by coverage in window 9:14952028-14952029
2012-10-07 16:21:06,027 - DEBUG - Taking top 8 variants by coverage in window 9:14952330-14952341
2012-10-07 16:21:06,033 - DEBUG - Taking top 8 variants by coverage in window 9:14952342-14952343
2012-10-07 16:21:08,493 - DEBUG - Taking top 8 variants by coverage in window 9:14976017-14976021
2012-10-07 16:21:08,543 - DEBUG - Taking top 8 variants by coverage in window 9:14976099-14976100
2012-10-07 16:21:08,650 - DEBUG - Taking top 8 variants by coverage in window 9:14976622-14976623
2012-10-07 16:21:08,819 - DEBUG - Taking top 8 variants by coverage in window 9:14977145-14977146
2012-10-07 16:21:09,260 - DEBUG - Taking top 8 variants by coverage in window 9:14984555-14984556
2012-10-07 16:21:09,289 - DEBUG - Taking top 8 variants by coverage in window 9:14985027-14985028
2012-10-07 16:21:09,996 - DEBUG - Taking top 8 variants by coverage in window 9:14994740-14994741
2012-10-07 16:21:10,120 - DEBUG - Taking top 8 variants by coverage in window 9:14996412-14996413
2012-10-07 16:21:10,781 - DEBUG - Taking top 8 variants by coverage in window 9:14999784-14999790
2012-10-07 16:21:11,698 - INFO - Processing region 9:15000000-16000000
2012-10-07 16:21:11,928 - DEBUG - Read 99230 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 16:21:12,183 - DEBUG - Read 108898 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 16:21:12,454 - DEBUG - Read 125975 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 16:21:12,759 - DEBUG - Read 127526 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 16:21:13,045 - DEBUG - Read 120262 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 16:21:13,302 - DEBUG - Read 113836 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 16:21:13,573 - DEBUG - Read 120504 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 16:21:13,837 - DEBUG - Read 109232 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 16:21:14,084 - DEBUG - Read 104300 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 16:21:14,335 - DEBUG - Read 104921 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 16:21:14,604 - DEBUG - Read 115979 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 16:21:14,845 - DEBUG - Read 105405 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 16:21:15,098 - DEBUG - Read 107322 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 16:21:15,353 - DEBUG - Read 117000 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 16:21:15,636 - DEBUG - Read 127141 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 16:21:15,871 - DEBUG - Read 97558 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 16:21:16,135 - DEBUG - Read 121222 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 16:21:16,403 - DEBUG - Read 115956 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 16:21:16,684 - DEBUG - Read 100553 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 16:21:16,929 - DEBUG - Read 100445 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 16:21:17,056 - DEBUG - Detected 24705 variants in 99230 reads
2012-10-07 16:21:17,248 - DEBUG - Detected 35923 variants in 108898 reads
2012-10-07 16:21:17,506 - DEBUG - Detected 46144 variants in 125975 reads
2012-10-07 16:21:17,812 - DEBUG - Detected 55045 variants in 127526 reads
2012-10-07 16:21:18,145 - DEBUG - Detected 62299 variants in 120262 reads
2012-10-07 16:21:18,507 - DEBUG - Detected 69070 variants in 113836 reads
2012-10-07 16:21:18,954 - DEBUG - Detected 83150 variants in 120504 reads
2012-10-07 16:21:19,428 - DEBUG - Detected 89113 variants in 109232 reads
2012-10-07 16:21:19,922 - DEBUG - Detected 94747 variants in 104300 reads
2012-10-07 16:21:20,447 - DEBUG - Detected 99805 variants in 104921 reads
2012-10-07 16:21:21,005 - DEBUG - Detected 106037 variants in 115979 reads
2012-10-07 16:21:21,582 - DEBUG - Detected 110300 variants in 105405 reads
2012-10-07 16:21:22,226 - DEBUG - Detected 114276 variants in 107322 reads
2012-10-07 16:21:22,853 - DEBUG - Detected 118604 variants in 117000 reads
2012-10-07 16:21:23,511 - DEBUG - Detected 126748 variants in 127141 reads
2012-10-07 16:21:24,180 - DEBUG - Detected 131116 variants in 97558 reads
2012-10-07 16:21:24,903 - DEBUG - Detected 135011 variants in 121222 reads
2012-10-07 16:21:25,698 - DEBUG - Detected 139274 variants in 115956 reads
2012-10-07 16:21:26,430 - DEBUG - Detected 143181 variants in 100553 reads
2012-10-07 16:21:27,159 - DEBUG - Detected 147578 variants in 100445 reads
2012-10-07 16:21:28,339 - DEBUG - Taking top 8 variants by coverage in window 9:15000312-15000313
2012-10-07 16:21:28,894 - DEBUG - Taking top 8 variants by coverage in window 9:15002425-15002426
2012-10-07 16:21:29,026 - DEBUG - Taking top 8 variants by coverage in window 9:15004303-15004304
2012-10-07 16:21:29,121 - DEBUG - Taking top 8 variants by coverage in window 9:15005619-15005626
2012-10-07 16:21:29,801 - DEBUG - Taking top 8 variants by coverage in window 9:15010207-15010218
2012-10-07 16:21:29,878 - DEBUG - Taking top 8 variants by coverage in window 9:15010270-15010271
2012-10-07 16:21:30,005 - DEBUG - Taking top 8 variants by coverage in window 9:15011949-15011951
2012-10-07 16:21:30,234 - DEBUG - Taking top 8 variants by coverage in window 9:15013591-15013592
2012-10-07 16:21:30,244 - DEBUG - Taking top 8 variants by coverage in window 9:15013595-15013596
2012-10-07 16:21:30,782 - DEBUG - Taking top 8 variants by coverage in window 9:15018185-15018186
2012-10-07 16:21:32,175 - DEBUG - Taking top 8 variants by coverage in window 9:15036069-15036070
2012-10-07 16:21:32,342 - DEBUG - Taking top 8 variants by coverage in window 9:15038379-15038394
2012-10-07 16:21:33,259 - DEBUG - Taking top 8 variants by coverage in window 9:15046041-15046047
2012-10-07 16:21:33,280 - DEBUG - Taking top 8 variants by coverage in window 9:15046055-15046056
2012-10-07 16:21:33,911 - DEBUG - Taking top 8 variants by coverage in window 9:15052664-15052668
2012-10-07 16:21:34,673 - DEBUG - Taking top 8 variants by coverage in window 9:15065417-15065418
2012-10-07 16:21:34,729 - DEBUG - Taking top 8 variants by coverage in window 9:15065502-15065503
2012-10-07 16:21:34,913 - DEBUG - Taking top 8 variants by coverage in window 9:15067377-15067384
2012-10-07 16:21:35,554 - DEBUG - Taking top 8 variants by coverage in window 9:15072773-15072776
2012-10-07 16:21:35,887 - DEBUG - Taking top 8 variants by coverage in window 9:15075977-15075978
2012-10-07 16:21:36,094 - DEBUG - Taking top 8 variants by coverage in window 9:15077326-15077328
2012-10-07 16:21:36,249 - DEBUG - Taking top 8 variants by coverage in window 9:15078621-15078624
2012-10-07 16:21:36,923 - DEBUG - Taking top 8 variants by coverage in window 9:15087033-15087034
2012-10-07 16:21:36,947 - DEBUG - Taking top 8 variants by coverage in window 9:15087043-15087044
2012-10-07 16:21:37,014 - DEBUG - Taking top 8 variants by coverage in window 9:15087385-15087386
2012-10-07 16:21:37,340 - DEBUG - Taking top 8 variants by coverage in window 9:15091455-15091470
2012-10-07 16:21:37,653 - DEBUG - Taking top 8 variants by coverage in window 9:15095750-15095752
2012-10-07 16:21:38,358 - DEBUG - Taking top 8 variants by coverage in window 9:15106321-15106322
2012-10-07 16:21:38,421 - DEBUG - Taking top 8 variants by coverage in window 9:15106364-15106365
2012-10-07 16:21:38,437 - DEBUG - Taking top 8 variants by coverage in window 9:15106365-15106366
2012-10-07 16:21:38,571 - DEBUG - Taking top 8 variants by coverage in window 9:15106571-15106572
2012-10-07 16:21:38,600 - DEBUG - Taking top 8 variants by coverage in window 9:15106745-15106756
2012-10-07 16:21:38,740 - DEBUG - Taking top 8 variants by coverage in window 9:15110342-15110343
2012-10-07 16:21:39,196 - DEBUG - Taking top 8 variants by coverage in window 9:15117563-15117564
2012-10-07 16:21:39,730 - DEBUG - Taking top 8 variants by coverage in window 9:15125266-15125275
2012-10-07 16:21:40,598 - DEBUG - Taking top 8 variants by coverage in window 9:15145744-15145745
2012-10-07 16:21:41,276 - DEBUG - Taking top 8 variants by coverage in window 9:15165075-15165076
2012-10-07 16:21:41,618 - DEBUG - Taking top 8 variants by coverage in window 9:15169960-15169962
2012-10-07 16:21:43,107 - DEBUG - Taking top 8 variants by coverage in window 9:15187022-15187023
2012-10-07 16:21:43,339 - DEBUG - Taking top 8 variants by coverage in window 9:15191065-15191066
2012-10-07 16:21:43,360 - DEBUG - Taking top 8 variants by coverage in window 9:15191071-15191072
2012-10-07 16:21:43,810 - DEBUG - Taking top 8 variants by coverage in window 9:15194806-15194817
2012-10-07 16:21:43,826 - DEBUG - Taking top 8 variants by coverage in window 9:15194820-15194821
2012-10-07 16:21:43,970 - DEBUG - Taking top 8 variants by coverage in window 9:15195588-15195589
2012-10-07 16:21:44,074 - DEBUG - Taking top 8 variants by coverage in window 9:15196042-15196043
2012-10-07 16:21:44,091 - DEBUG - Taking top 8 variants by coverage in window 9:15196052-15196053
2012-10-07 16:21:44,200 - DEBUG - Taking top 8 variants by coverage in window 9:15196568-15196569
2012-10-07 16:21:44,654 - DEBUG - Taking top 8 variants by coverage in window 9:15199320-15199321
2012-10-07 16:21:45,076 - DEBUG - Taking top 8 variants by coverage in window 9:15201397-15201398
2012-10-07 16:21:45,318 - DEBUG - Taking top 8 variants by coverage in window 9:15205009-15205010
2012-10-07 16:21:46,001 - DEBUG - Taking top 8 variants by coverage in window 9:15208091-15208092
2012-10-07 16:21:46,188 - DEBUG - Taking top 8 variants by coverage in window 9:15209428-15209429
2012-10-07 16:21:46,344 - DEBUG - Taking top 8 variants by coverage in window 9:15210968-15210969
2012-10-07 16:21:46,399 - DEBUG - Taking top 8 variants by coverage in window 9:15210983-15210984
2012-10-07 16:21:47,369 - DEBUG - Taking top 8 variants by coverage in window 9:15216789-15216790
2012-10-07 16:21:48,545 - DEBUG - Taking top 8 variants by coverage in window 9:15229056-15229057
2012-10-07 16:21:48,558 - DEBUG - Taking top 8 variants by coverage in window 9:15229060-15229069
2012-10-07 16:21:50,047 - DEBUG - Taking top 8 variants by coverage in window 9:15242132-15242133
2012-10-07 16:21:50,317 - DEBUG - Taking top 8 variants by coverage in window 9:15243815-15243816
2012-10-07 16:21:50,327 - DEBUG - Taking top 8 variants by coverage in window 9:15243836-15243837
2012-10-07 16:21:50,711 - DEBUG - Taking top 8 variants by coverage in window 9:15247442-15247443
2012-10-07 16:21:51,478 - DEBUG - Taking top 8 variants by coverage in window 9:15256613-15256615
2012-10-07 16:21:51,674 - DEBUG - Taking top 8 variants by coverage in window 9:15259353-15259355
2012-10-07 16:21:51,712 - DEBUG - Taking top 8 variants by coverage in window 9:15259633-15259634
2012-10-07 16:21:52,119 - DEBUG - Taking top 8 variants by coverage in window 9:15266671-15266672
2012-10-07 16:21:52,143 - DEBUG - Taking top 8 variants by coverage in window 9:15266682-15266683
2012-10-07 16:21:52,946 - DEBUG - Taking top 8 variants by coverage in window 9:15272999-15273003
2012-10-07 16:21:55,054 - DEBUG - Taking top 8 variants by coverage in window 9:15294844-15294845
2012-10-07 16:21:55,185 - DEBUG - Taking top 8 variants by coverage in window 9:15294966-15294972
2012-10-07 16:21:56,133 - DEBUG - Taking top 8 variants by coverage in window 9:15302095-15302096
2012-10-07 16:21:56,263 - DEBUG - Taking top 8 variants by coverage in window 9:15303210-15303211
2012-10-07 16:21:56,781 - DEBUG - Taking top 8 variants by coverage in window 9:15307674-15307677
2012-10-07 16:21:57,581 - DEBUG - Taking top 8 variants by coverage in window 9:15315995-15315996
2012-10-07 16:21:57,936 - DEBUG - Taking top 8 variants by coverage in window 9:15319627-15319631
2012-10-07 16:21:58,110 - DEBUG - Taking top 8 variants by coverage in window 9:15322337-15322338
2012-10-07 16:21:58,983 - DEBUG - Taking top 8 variants by coverage in window 9:15335422-15335423
2012-10-07 16:21:59,291 - DEBUG - Taking top 8 variants by coverage in window 9:15338474-15338475
2012-10-07 16:21:59,422 - DEBUG - Taking top 8 variants by coverage in window 9:15341246-15341253
2012-10-07 16:21:59,561 - DEBUG - Taking top 8 variants by coverage in window 9:15342985-15342986
2012-10-07 16:21:59,727 - DEBUG - Taking top 8 variants by coverage in window 9:15344534-15344535
2012-10-07 16:21:59,781 - DEBUG - Taking top 8 variants by coverage in window 9:15344824-15344825
2012-10-07 16:21:59,827 - DEBUG - Taking top 8 variants by coverage in window 9:15344845-15344846
2012-10-07 16:21:59,847 - DEBUG - Taking top 8 variants by coverage in window 9:15344846-15344848
2012-10-07 16:21:59,878 - DEBUG - Taking top 8 variants by coverage in window 9:15344850-15344853
2012-10-07 16:22:00,994 - DEBUG - Taking top 8 variants by coverage in window 9:15358487-15358493
2012-10-07 16:22:01,262 - DEBUG - Taking top 8 variants by coverage in window 9:15361866-15361870
2012-10-07 16:22:01,462 - DEBUG - Taking top 8 variants by coverage in window 9:15363397-15363398
2012-10-07 16:22:01,536 - DEBUG - Taking top 8 variants by coverage in window 9:15363667-15363669
2012-10-07 16:22:01,633 - DEBUG - Taking top 8 variants by coverage in window 9:15364799-15364801
2012-10-07 16:22:01,785 - DEBUG - Taking top 8 variants by coverage in window 9:15366363-15366364
2012-10-07 16:22:01,909 - DEBUG - Taking top 8 variants by coverage in window 9:15367517-15367518
2012-10-07 16:22:02,296 - DEBUG - Taking top 8 variants by coverage in window 9:15375514-15375515
2012-10-07 16:22:02,300 - DEBUG - Taking top 8 variants by coverage in window 9:15375516-15375519
2012-10-07 16:22:02,495 - DEBUG - Taking top 8 variants by coverage in window 9:15376727-15376728
2012-10-07 16:22:02,721 - DEBUG - Taking top 8 variants by coverage in window 9:15379235-15379236
2012-10-07 16:22:03,287 - DEBUG - Taking top 8 variants by coverage in window 9:15389268-15389269
2012-10-07 16:22:03,316 - DEBUG - Taking top 8 variants by coverage in window 9:15389269-15389270
2012-10-07 16:22:04,070 - DEBUG - Taking top 8 variants by coverage in window 9:15395883-15395884
2012-10-07 16:22:04,552 - DEBUG - Taking top 8 variants by coverage in window 9:15396163-15396164
2012-10-07 16:22:04,687 - DEBUG - Taking top 8 variants by coverage in window 9:15396228-15396234
2012-10-07 16:22:04,716 - DEBUG - Taking top 8 variants by coverage in window 9:15396251-15396259
2012-10-07 16:22:05,446 - DEBUG - Taking top 8 variants by coverage in window 9:15402487-15402498
2012-10-07 16:22:05,718 - DEBUG - Taking top 8 variants by coverage in window 9:15405108-15405111
2012-10-07 16:22:06,345 - DEBUG - Taking top 8 variants by coverage in window 9:15410312-15410326
2012-10-07 16:22:06,570 - DEBUG - Taking top 8 variants by coverage in window 9:15413658-15413659
2012-10-07 16:22:06,870 - DEBUG - Taking top 8 variants by coverage in window 9:15417226-15417227
2012-10-07 16:22:07,063 - DEBUG - Taking top 8 variants by coverage in window 9:15419756-15419757
2012-10-07 16:22:07,214 - DEBUG - Taking top 8 variants by coverage in window 9:15420878-15420879
2012-10-07 16:22:07,941 - DEBUG - Taking top 8 variants by coverage in window 9:15430346-15430347
2012-10-07 16:22:08,060 - DEBUG - Taking top 8 variants by coverage in window 9:15430424-15430425
2012-10-07 16:22:08,102 - DEBUG - Taking top 8 variants by coverage in window 9:15430438-15430440
2012-10-07 16:22:08,323 - DEBUG - Taking top 8 variants by coverage in window 9:15430863-15430865
2012-10-07 16:22:08,353 - DEBUG - Taking top 8 variants by coverage in window 9:15430884-15430887
2012-10-07 16:22:10,243 - DEBUG - Taking top 8 variants by coverage in window 9:15448007-15448008
2012-10-07 16:22:11,066 - DEBUG - Taking top 8 variants by coverage in window 9:15454764-15454765
2012-10-07 16:22:11,147 - DEBUG - Taking top 8 variants by coverage in window 9:15455349-15455350
2012-10-07 16:22:13,269 - DEBUG - Taking top 8 variants by coverage in window 9:15475044-15475045
2012-10-07 16:22:14,148 - DEBUG - Taking top 8 variants by coverage in window 9:15483449-15483452
2012-10-07 16:22:14,591 - DEBUG - Taking top 8 variants by coverage in window 9:15486318-15486323
2012-10-07 16:22:20,738 - DEBUG - Taking top 8 variants by coverage in window 9:15531647-15531649
2012-10-07 16:22:20,810 - DEBUG - Taking top 8 variants by coverage in window 9:15531702-15531709
2012-10-07 16:22:20,819 - DEBUG - Taking top 8 variants by coverage in window 9:15531713-15531717
2012-10-07 16:22:20,866 - DEBUG - Taking top 8 variants by coverage in window 9:15531766-15531767
2012-10-07 16:22:20,927 - DEBUG - Taking top 8 variants by coverage in window 9:15531821-15531822
2012-10-07 16:22:21,288 - DEBUG - Taking top 8 variants by coverage in window 9:15535592-15535594
2012-10-07 16:22:21,937 - DEBUG - Taking top 8 variants by coverage in window 9:15537916-15537917
2012-10-07 16:22:22,158 - DEBUG - Taking top 8 variants by coverage in window 9:15540554-15540555
2012-10-07 16:22:22,283 - DEBUG - Taking top 8 variants by coverage in window 9:15540608-15540609
2012-10-07 16:22:23,367 - DEBUG - Taking top 8 variants by coverage in window 9:15552096-15552097
2012-10-07 16:22:23,767 - DEBUG - Taking top 8 variants by coverage in window 9:15555529-15555530
2012-10-07 16:22:24,303 - DEBUG - Taking top 8 variants by coverage in window 9:15563292-15563299
2012-10-07 16:22:26,013 - DEBUG - Taking top 8 variants by coverage in window 9:15579061-15579062
2012-10-07 16:22:26,040 - DEBUG - Taking top 8 variants by coverage in window 9:15579080-15579081
2012-10-07 16:22:26,315 - DEBUG - Taking top 8 variants by coverage in window 9:15582475-15582476
2012-10-07 16:22:26,380 - DEBUG - Taking top 8 variants by coverage in window 9:15582520-15582521
2012-10-07 16:22:26,449 - DEBUG - Taking top 8 variants by coverage in window 9:15582528-15582529
2012-10-07 16:22:26,752 - DEBUG - Taking top 8 variants by coverage in window 9:15585568-15585573
2012-10-07 16:22:27,244 - DEBUG - Taking top 8 variants by coverage in window 9:15591975-15591976
2012-10-07 16:22:28,564 - DEBUG - Taking top 8 variants by coverage in window 9:15608430-15608431
2012-10-07 16:22:29,415 - DEBUG - Taking top 8 variants by coverage in window 9:15619344-15619345
2012-10-07 16:22:31,126 - DEBUG - Taking top 8 variants by coverage in window 9:15634855-15634856
2012-10-07 16:22:34,516 - DEBUG - Taking top 8 variants by coverage in window 9:15675231-15675232
2012-10-07 16:22:34,547 - DEBUG - Taking top 8 variants by coverage in window 9:15675238-15675239
2012-10-07 16:22:34,624 - DEBUG - Taking top 8 variants by coverage in window 9:15675335-15675339
2012-10-07 16:22:34,646 - DEBUG - Taking top 8 variants by coverage in window 9:15675340-15675341
2012-10-07 16:22:34,657 - DEBUG - Taking top 8 variants by coverage in window 9:15675346-15675347
2012-10-07 16:22:34,895 - DEBUG - Taking top 8 variants by coverage in window 9:15677411-15677412
2012-10-07 16:22:35,187 - DEBUG - Taking top 8 variants by coverage in window 9:15680898-15680901
2012-10-07 16:22:36,744 - DEBUG - Taking top 8 variants by coverage in window 9:15699035-15699036
2012-10-07 16:22:38,258 - DEBUG - Taking top 8 variants by coverage in window 9:15718862-15718865
2012-10-07 16:22:38,946 - DEBUG - Taking top 8 variants by coverage in window 9:15726754-15726755
2012-10-07 16:22:39,100 - DEBUG - Taking top 8 variants by coverage in window 9:15728076-15728077
2012-10-07 16:22:39,113 - DEBUG - Taking top 8 variants by coverage in window 9:15728078-15728079
2012-10-07 16:22:39,692 - DEBUG - Taking top 8 variants by coverage in window 9:15733322-15733350
2012-10-07 16:22:39,745 - DEBUG - Taking top 8 variants by coverage in window 9:15733527-15733528
2012-10-07 16:22:39,891 - DEBUG - Taking top 8 variants by coverage in window 9:15736928-15736933
2012-10-07 16:22:40,936 - DEBUG - Taking top 8 variants by coverage in window 9:15748355-15748356
2012-10-07 16:22:41,271 - DEBUG - Taking top 8 variants by coverage in window 9:15750425-15750429
2012-10-07 16:22:41,294 - DEBUG - Taking top 8 variants by coverage in window 9:15750441-15750442
2012-10-07 16:22:41,451 - DEBUG - Taking top 8 variants by coverage in window 9:15752609-15752611
2012-10-07 16:22:41,462 - DEBUG - Taking top 8 variants by coverage in window 9:15752614-15752617
2012-10-07 16:22:42,317 - DEBUG - Taking top 8 variants by coverage in window 9:15764051-15764052
2012-10-07 16:22:42,637 - DEBUG - Taking top 8 variants by coverage in window 9:15770204-15770205
2012-10-07 16:22:42,905 - DEBUG - Taking top 8 variants by coverage in window 9:15775889-15775891
2012-10-07 16:22:44,836 - DEBUG - Taking top 8 variants by coverage in window 9:15804823-15804827
2012-10-07 16:22:45,879 - DEBUG - Taking top 8 variants by coverage in window 9:15815428-15815430
2012-10-07 16:22:47,034 - DEBUG - Taking top 8 variants by coverage in window 9:15830450-15830451
2012-10-07 16:22:47,463 - DEBUG - Taking top 8 variants by coverage in window 9:15836616-15836618
2012-10-07 16:22:48,790 - DEBUG - Taking top 8 variants by coverage in window 9:15854845-15854846
2012-10-07 16:22:48,826 - DEBUG - Taking top 8 variants by coverage in window 9:15855230-15855231
2012-10-07 16:22:49,226 - DEBUG - Taking top 8 variants by coverage in window 9:15860396-15860401
2012-10-07 16:22:49,730 - DEBUG - Taking top 8 variants by coverage in window 9:15865507-15865509
2012-10-07 16:22:50,372 - DEBUG - Taking top 8 variants by coverage in window 9:15873608-15873609
2012-10-07 16:22:51,244 - DEBUG - Taking top 8 variants by coverage in window 9:15883673-15883675
2012-10-07 16:22:51,967 - DEBUG - Taking top 8 variants by coverage in window 9:15892572-15892573
2012-10-07 16:22:52,469 - DEBUG - Taking top 8 variants by coverage in window 9:15899669-15899671
2012-10-07 16:22:52,545 - DEBUG - Taking top 8 variants by coverage in window 9:15899675-15899676
2012-10-07 16:22:53,050 - DEBUG - Taking top 8 variants by coverage in window 9:15902332-15902333
2012-10-07 16:22:55,079 - DEBUG - Taking top 8 variants by coverage in window 9:15922260-15922261
2012-10-07 16:22:55,508 - DEBUG - Taking top 8 variants by coverage in window 9:15927105-15927106
2012-10-07 16:22:55,700 - DEBUG - Taking top 8 variants by coverage in window 9:15929136-15929148
2012-10-07 16:22:55,761 - DEBUG - Taking top 8 variants by coverage in window 9:15929810-15929812
2012-10-07 16:22:55,963 - DEBUG - Taking top 8 variants by coverage in window 9:15932544-15932545
2012-10-07 16:22:58,462 - DEBUG - Taking top 8 variants by coverage in window 9:15964319-15964321
2012-10-07 16:22:58,641 - DEBUG - Taking top 8 variants by coverage in window 9:15967398-15967399
2012-10-07 16:22:58,680 - DEBUG - Taking top 8 variants by coverage in window 9:15967421-15967422
2012-10-07 16:22:58,765 - DEBUG - Taking top 8 variants by coverage in window 9:15968803-15968804
2012-10-07 16:22:59,239 - DEBUG - Taking top 8 variants by coverage in window 9:15973449-15973450
2012-10-07 16:22:59,435 - DEBUG - Taking top 8 variants by coverage in window 9:15975927-15975928
2012-10-07 16:22:59,972 - DEBUG - Taking top 8 variants by coverage in window 9:15984680-15984681
2012-10-07 16:23:00,706 - DEBUG - Taking top 8 variants by coverage in window 9:15996613-15996615
2012-10-07 16:23:00,748 - DEBUG - Taking top 8 variants by coverage in window 9:15996634-15996635
2012-10-07 16:23:01,892 - DEBUG - Read 85513 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 16:23:02,112 - DEBUG - Read 92296 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 16:23:02,357 - DEBUG - Read 109573 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 16:23:02,661 - DEBUG - Read 127776 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 16:23:02,915 - DEBUG - Read 104187 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 16:23:03,144 - DEBUG - Read 97934 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 16:23:03,386 - DEBUG - Read 104617 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 16:23:03,614 - DEBUG - Read 91338 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 16:23:03,829 - DEBUG - Read 87593 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 16:23:04,055 - DEBUG - Read 92572 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 16:23:04,294 - DEBUG - Read 99842 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 16:23:04,502 - DEBUG - Read 88323 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 16:23:04,720 - DEBUG - Read 88820 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 16:23:04,942 - DEBUG - Read 98156 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 16:23:05,189 - DEBUG - Read 107335 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 16:23:05,398 - DEBUG - Read 83271 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 16:23:05,632 - DEBUG - Read 104001 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 16:23:05,899 - DEBUG - Read 100284 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 16:23:06,093 - DEBUG - Read 81444 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 16:23:06,311 - DEBUG - Read 87249 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 16:23:06,419 - DEBUG - Detected 24113 variants in 85513 reads
2012-10-07 16:23:06,586 - DEBUG - Detected 35161 variants in 92296 reads
2012-10-07 16:23:06,816 - DEBUG - Detected 43500 variants in 109573 reads
2012-10-07 16:23:07,108 - DEBUG - Detected 52064 variants in 127776 reads
2012-10-07 16:23:07,410 - DEBUG - Detected 57519 variants in 104187 reads
2012-10-07 16:23:07,734 - DEBUG - Detected 64791 variants in 97934 reads
2012-10-07 16:23:08,141 - DEBUG - Detected 77564 variants in 104617 reads
2012-10-07 16:23:08,561 - DEBUG - Detected 82536 variants in 91338 reads
2012-10-07 16:23:09,007 - DEBUG - Detected 87837 variants in 87593 reads
2012-10-07 16:23:09,477 - DEBUG - Detected 92415 variants in 92572 reads
2012-10-07 16:23:09,977 - DEBUG - Detected 96638 variants in 99842 reads
2012-10-07 16:23:10,487 - DEBUG - Detected 100420 variants in 88323 reads
2012-10-07 16:23:11,010 - DEBUG - Detected 104393 variants in 88820 reads
2012-10-07 16:23:11,611 - DEBUG - Detected 108357 variants in 98156 reads
2012-10-07 16:23:12,193 - DEBUG - Detected 115674 variants in 107335 reads
2012-10-07 16:23:12,783 - DEBUG - Detected 119176 variants in 83271 reads
2012-10-07 16:23:13,416 - DEBUG - Detected 122813 variants in 104001 reads
2012-10-07 16:23:14,057 - DEBUG - Detected 126805 variants in 100284 reads
2012-10-07 16:23:14,703 - DEBUG - Detected 130314 variants in 81444 reads
2012-10-07 16:23:15,423 - DEBUG - Detected 134247 variants in 87249 reads
2012-10-07 16:23:17,210 - DEBUG - Taking top 8 variants by coverage in window 9:16013420-16013435
2012-10-07 16:23:17,288 - DEBUG - Taking top 8 variants by coverage in window 9:16013574-16013595
2012-10-07 16:23:17,792 - DEBUG - Taking top 8 variants by coverage in window 9:16018902-16018903
2012-10-07 16:23:18,370 - DEBUG - Taking top 8 variants by coverage in window 9:16026306-16026307
2012-10-07 16:23:18,590 - DEBUG - Taking top 8 variants by coverage in window 9:16029681-16029682
2012-10-07 16:23:18,748 - DEBUG - Taking top 8 variants by coverage in window 9:16032119-16032122
2012-10-07 16:23:18,775 - DEBUG - Taking top 8 variants by coverage in window 9:16032163-16032164
2012-10-07 16:23:20,144 - DEBUG - Taking top 8 variants by coverage in window 9:16047783-16047788
2012-10-07 16:23:20,160 - DEBUG - Taking top 8 variants by coverage in window 9:16047791-16047792
2012-10-07 16:23:20,252 - DEBUG - Taking top 8 variants by coverage in window 9:16047946-16047947
2012-10-07 16:23:20,296 - DEBUG - Taking top 8 variants by coverage in window 9:16047960-16047961
2012-10-07 16:23:20,449 - DEBUG - Taking top 8 variants by coverage in window 9:16049349-16049350
2012-10-07 16:23:20,685 - DEBUG - Taking top 8 variants by coverage in window 9:16053736-16053738
2012-10-07 16:23:20,714 - DEBUG - Taking top 8 variants by coverage in window 9:16053747-16053748
2012-10-07 16:23:21,096 - DEBUG - Taking top 8 variants by coverage in window 9:16060481-16060482
2012-10-07 16:23:22,204 - DEBUG - Taking top 8 variants by coverage in window 9:16073142-16073143
2012-10-07 16:23:22,284 - DEBUG - Taking top 8 variants by coverage in window 9:16073370-16073373
2012-10-07 16:23:22,467 - DEBUG - Taking top 8 variants by coverage in window 9:16076566-16076572
2012-10-07 16:23:23,396 - DEBUG - Taking top 8 variants by coverage in window 9:16088483-16088501
2012-10-07 16:23:24,015 - DEBUG - Taking top 8 variants by coverage in window 9:16092758-16092759
2012-10-07 16:23:24,100 - DEBUG - Taking top 8 variants by coverage in window 9:16092803-16092804
2012-10-07 16:23:24,684 - DEBUG - Taking top 8 variants by coverage in window 9:16099423-16099424
2012-10-07 16:23:25,375 - DEBUG - Taking top 8 variants by coverage in window 9:16106150-16106151
2012-10-07 16:23:25,918 - DEBUG - Taking top 8 variants by coverage in window 9:16114642-16114643
2012-10-07 16:23:26,855 - DEBUG - Taking top 8 variants by coverage in window 9:16124049-16124050
2012-10-07 16:23:26,877 - DEBUG - Taking top 8 variants by coverage in window 9:16124167-16124168
2012-10-07 16:23:27,184 - DEBUG - Taking top 8 variants by coverage in window 9:16126361-16126362
2012-10-07 16:23:27,320 - DEBUG - Taking top 8 variants by coverage in window 9:16127522-16127523
2012-10-07 16:23:27,732 - DEBUG - Taking top 8 variants by coverage in window 9:16129511-16129512
2012-10-07 16:23:27,867 - DEBUG - Taking top 8 variants by coverage in window 9:16129585-16129586
2012-10-07 16:23:27,890 - DEBUG - Taking top 8 variants by coverage in window 9:16129589-16129590
2012-10-07 16:23:29,486 - DEBUG - Taking top 8 variants by coverage in window 9:16149141-16149144
2012-10-07 16:23:30,095 - DEBUG - Taking top 8 variants by coverage in window 9:16153201-16153206
2012-10-07 16:23:31,661 - DEBUG - Taking top 8 variants by coverage in window 9:16166734-16166735
2012-10-07 16:23:31,670 - DEBUG - Taking top 8 variants by coverage in window 9:16166735-16166737
2012-10-07 16:23:33,268 - DEBUG - Taking top 8 variants by coverage in window 9:16187716-16187723
2012-10-07 16:23:33,620 - DEBUG - Taking top 8 variants by coverage in window 9:16190049-16190050
2012-10-07 16:23:34,534 - DEBUG - Taking top 8 variants by coverage in window 9:16200343-16200351
2012-10-07 16:23:34,831 - DEBUG - Taking top 8 variants by coverage in window 9:16202619-16202633
2012-10-07 16:23:37,853 - DEBUG - Taking top 8 variants by coverage in window 9:16213610-16213613
2012-10-07 16:23:38,421 - DEBUG - Taking top 8 variants by coverage in window 9:16221153-16221154
2012-10-07 16:23:38,715 - DEBUG - Taking top 8 variants by coverage in window 9:16222643-16222644
2012-10-07 16:23:38,895 - DEBUG - Taking top 8 variants by coverage in window 9:16224747-16224750
2012-10-07 16:23:38,972 - DEBUG - Taking top 8 variants by coverage in window 9:16224757-16224759
2012-10-07 16:23:40,937 - DEBUG - Taking top 8 variants by coverage in window 9:16249260-16249261
2012-10-07 16:23:41,125 - DEBUG - Taking top 8 variants by coverage in window 9:16252005-16252006
2012-10-07 16:23:41,144 - DEBUG - Taking top 8 variants by coverage in window 9:16252014-16252015
2012-10-07 16:23:41,226 - DEBUG - Taking top 8 variants by coverage in window 9:16252400-16252401
2012-10-07 16:23:41,414 - DEBUG - Taking top 8 variants by coverage in window 9:16255056-16255057
2012-10-07 16:23:41,643 - DEBUG - Taking top 8 variants by coverage in window 9:16263530-16263531
2012-10-07 16:23:41,803 - DEBUG - Taking top 8 variants by coverage in window 9:16264564-16264565
2012-10-07 16:23:44,959 - DEBUG - Taking top 8 variants by coverage in window 9:16306980-16306981
2012-10-07 16:23:45,863 - DEBUG - Taking top 8 variants by coverage in window 9:16315693-16315694
2012-10-07 16:23:46,052 - DEBUG - Taking top 8 variants by coverage in window 9:16316341-16316342
2012-10-07 16:23:46,429 - DEBUG - Taking top 8 variants by coverage in window 9:16320830-16320832
2012-10-07 16:23:47,305 - DEBUG - Taking top 8 variants by coverage in window 9:16331106-16331107
2012-10-07 16:23:47,820 - DEBUG - Taking top 8 variants by coverage in window 9:16335238-16335239
2012-10-07 16:23:48,162 - DEBUG - Taking top 8 variants by coverage in window 9:16340248-16340249
2012-10-07 16:23:48,220 - DEBUG - Taking top 8 variants by coverage in window 9:16341060-16341061
2012-10-07 16:23:50,641 - DEBUG - Taking top 8 variants by coverage in window 9:16373620-16373624
2012-10-07 16:23:50,761 - DEBUG - Taking top 8 variants by coverage in window 9:16374059-16374060
2012-10-07 16:23:52,729 - DEBUG - Taking top 8 variants by coverage in window 9:16400503-16400504
2012-10-07 16:23:54,279 - DEBUG - Taking top 8 variants by coverage in window 9:16429903-16429904
2012-10-07 16:23:55,646 - DEBUG - Taking top 8 variants by coverage in window 9:16452310-16452311
2012-10-07 16:23:57,389 - DEBUG - Taking top 8 variants by coverage in window 9:16488012-16488014
2012-10-07 16:23:57,424 - DEBUG - Taking top 8 variants by coverage in window 9:16488464-16488478
2012-10-07 16:23:57,697 - DEBUG - Taking top 8 variants by coverage in window 9:16500532-16500536
2012-10-07 16:23:57,883 - DEBUG - Taking top 8 variants by coverage in window 9:16506144-16506145
2012-10-07 16:23:58,340 - DEBUG - Taking top 8 variants by coverage in window 9:16516894-16516895
2012-10-07 16:23:59,416 - DEBUG - Taking top 8 variants by coverage in window 9:16531469-16531470
2012-10-07 16:23:59,906 - DEBUG - Taking top 8 variants by coverage in window 9:16538721-16538722
2012-10-07 16:24:00,509 - DEBUG - Taking top 8 variants by coverage in window 9:16551881-16551883
2012-10-07 16:24:00,617 - DEBUG - Taking top 8 variants by coverage in window 9:16552376-16552379
2012-10-07 16:24:00,978 - DEBUG - Taking top 8 variants by coverage in window 9:16555672-16555673
2012-10-07 16:24:01,742 - DEBUG - Taking top 8 variants by coverage in window 9:16573325-16573329
2012-10-07 16:24:01,817 - DEBUG - Taking top 8 variants by coverage in window 9:16574752-16574753
2012-10-07 16:24:02,363 - DEBUG - Taking top 8 variants by coverage in window 9:16582181-16582182
2012-10-07 16:24:02,808 - DEBUG - Taking top 8 variants by coverage in window 9:16592011-16592016
2012-10-07 16:24:02,986 - DEBUG - Taking top 8 variants by coverage in window 9:16592128-16592131
2012-10-07 16:24:03,032 - DEBUG - Taking top 8 variants by coverage in window 9:16592132-16592142
2012-10-07 16:24:04,233 - DEBUG - Taking top 8 variants by coverage in window 9:16609900-16609901
2012-10-07 16:24:04,652 - DEBUG - Taking top 8 variants by coverage in window 9:16618426-16618427
2012-10-07 16:24:04,694 - DEBUG - Taking top 8 variants by coverage in window 9:16618894-16618895
2012-10-07 16:24:06,927 - DEBUG - Taking top 8 variants by coverage in window 9:16647236-16647237
2012-10-07 16:24:07,002 - DEBUG - Taking top 8 variants by coverage in window 9:16648146-16648158
2012-10-07 16:24:07,644 - DEBUG - Taking top 8 variants by coverage in window 9:16658547-16658549
2012-10-07 16:24:07,732 - DEBUG - Taking top 8 variants by coverage in window 9:16665820-16665821
2012-10-07 16:24:09,810 - DEBUG - Taking top 8 variants by coverage in window 9:16685502-16685505
2012-10-07 16:24:09,955 - DEBUG - Taking top 8 variants by coverage in window 9:16686228-16686230
2012-10-07 16:24:12,151 - DEBUG - Taking top 8 variants by coverage in window 9:16713112-16713113
2012-10-07 16:24:12,604 - DEBUG - Taking top 8 variants by coverage in window 9:16716355-16716356
2012-10-07 16:24:13,219 - DEBUG - Taking top 8 variants by coverage in window 9:16720850-16720851
2012-10-07 16:24:16,581 - DEBUG - Taking top 8 variants by coverage in window 9:16766984-16766985
2012-10-07 16:24:16,624 - DEBUG - Taking top 8 variants by coverage in window 9:16767383-16767384
2012-10-07 16:24:18,231 - DEBUG - Taking top 8 variants by coverage in window 9:16787676-16787677
2012-10-07 16:24:18,561 - DEBUG - Taking top 8 variants by coverage in window 9:16788710-16788713
2012-10-07 16:24:18,728 - DEBUG - Taking top 8 variants by coverage in window 9:16790174-16790183
2012-10-07 16:24:19,806 - DEBUG - Taking top 8 variants by coverage in window 9:16802975-16802981
2012-10-07 16:24:19,867 - DEBUG - Taking top 8 variants by coverage in window 9:16802999-16803003
2012-10-07 16:24:20,216 - DEBUG - Taking top 8 variants by coverage in window 9:16808200-16808201
2012-10-07 16:24:20,714 - DEBUG - Taking top 8 variants by coverage in window 9:16815439-16815441
2012-10-07 16:24:20,832 - DEBUG - Taking top 8 variants by coverage in window 9:16817026-16817028
2012-10-07 16:24:21,495 - DEBUG - Taking top 8 variants by coverage in window 9:16828268-16828269
2012-10-07 16:24:22,077 - DEBUG - Taking top 8 variants by coverage in window 9:16834976-16834977
2012-10-07 16:24:24,423 - DEBUG - Taking top 8 variants by coverage in window 9:16870003-16870004
2012-10-07 16:24:24,974 - DEBUG - Taking top 8 variants by coverage in window 9:16878106-16878107
2012-10-07 16:24:25,858 - DEBUG - Taking top 8 variants by coverage in window 9:16887918-16887919
2012-10-07 16:24:26,034 - DEBUG - Taking top 8 variants by coverage in window 9:16893962-16893963
2012-10-07 16:24:26,181 - DEBUG - Taking top 8 variants by coverage in window 9:16895777-16895779
2012-10-07 16:24:26,422 - DEBUG - Taking top 8 variants by coverage in window 9:16901001-16901002
2012-10-07 16:24:26,480 - DEBUG - Taking top 8 variants by coverage in window 9:16901186-16901187
2012-10-07 16:24:27,231 - DEBUG - Taking top 8 variants by coverage in window 9:16907514-16907515
2012-10-07 16:24:27,266 - DEBUG - Taking top 8 variants by coverage in window 9:16907515-16907516
2012-10-07 16:24:27,651 - DEBUG - Taking top 8 variants by coverage in window 9:16907544-16907547
2012-10-07 16:24:27,950 - DEBUG - Taking top 8 variants by coverage in window 9:16907557-16907558
2012-10-07 16:24:29,363 - DEBUG - Taking top 8 variants by coverage in window 9:16908173-16908174
2012-10-07 16:24:29,427 - DEBUG - Taking top 8 variants by coverage in window 9:16908608-16908609
2012-10-07 16:24:29,870 - DEBUG - Taking top 8 variants by coverage in window 9:16911320-16911323
2012-10-07 16:24:30,294 - DEBUG - Taking top 8 variants by coverage in window 9:16914365-16914366
2012-10-07 16:24:30,511 - DEBUG - Taking top 8 variants by coverage in window 9:16916285-16916286
2012-10-07 16:24:32,207 - DEBUG - Taking top 8 variants by coverage in window 9:16933321-16933331
2012-10-07 16:24:32,765 - DEBUG - Taking top 8 variants by coverage in window 9:16939621-16939622
2012-10-07 16:24:33,361 - DEBUG - Taking top 8 variants by coverage in window 9:16950144-16950154
2012-10-07 16:24:33,759 - DEBUG - Taking top 8 variants by coverage in window 9:16954457-16954458
2012-10-07 16:24:34,115 - DEBUG - Taking top 8 variants by coverage in window 9:16959066-16959072
2012-10-07 16:24:34,150 - DEBUG - Taking top 8 variants by coverage in window 9:16959332-16959333
2012-10-07 16:24:34,829 - DEBUG - Taking top 8 variants by coverage in window 9:16969453-16969461
2012-10-07 16:24:37,858 - DEBUG - Read 69822 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 16:24:38,057 - DEBUG - Read 76009 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 16:24:38,279 - DEBUG - Read 92370 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 16:24:38,516 - DEBUG - Read 87979 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 16:24:38,743 - DEBUG - Read 85863 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 16:24:38,950 - DEBUG - Read 81266 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 16:24:39,171 - DEBUG - Read 88487 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 16:24:39,374 - DEBUG - Read 75001 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 16:24:39,564 - DEBUG - Read 71108 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 16:24:39,768 - DEBUG - Read 77495 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 16:24:39,986 - DEBUG - Read 82966 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 16:24:40,172 - DEBUG - Read 71668 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 16:24:40,364 - DEBUG - Read 71966 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 16:24:40,564 - DEBUG - Read 81902 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 16:24:40,788 - DEBUG - Read 88673 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 16:24:40,972 - DEBUG - Read 66820 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 16:24:41,184 - DEBUG - Read 86761 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 16:24:41,450 - DEBUG - Read 84425 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 16:24:41,622 - DEBUG - Read 65135 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 16:24:41,821 - DEBUG - Read 72079 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 16:24:41,919 - DEBUG - Detected 24748 variants in 69822 reads
2012-10-07 16:24:42,084 - DEBUG - Detected 33457 variants in 76009 reads
2012-10-07 16:24:42,321 - DEBUG - Detected 43236 variants in 92370 reads
2012-10-07 16:24:42,577 - DEBUG - Detected 49396 variants in 87979 reads
2012-10-07 16:24:42,857 - DEBUG - Detected 54131 variants in 85863 reads
2012-10-07 16:24:43,165 - DEBUG - Detected 62892 variants in 81266 reads
2012-10-07 16:24:43,514 - DEBUG - Detected 74941 variants in 88487 reads
2012-10-07 16:24:43,904 - DEBUG - Detected 79217 variants in 75001 reads
2012-10-07 16:24:44,315 - DEBUG - Detected 84349 variants in 71108 reads
2012-10-07 16:24:44,759 - DEBUG - Detected 88695 variants in 77495 reads
2012-10-07 16:24:45,264 - DEBUG - Detected 93043 variants in 82966 reads
2012-10-07 16:24:45,742 - DEBUG - Detected 96226 variants in 71668 reads
2012-10-07 16:24:46,232 - DEBUG - Detected 100007 variants in 71966 reads
2012-10-07 16:24:46,754 - DEBUG - Detected 104373 variants in 81902 reads
2012-10-07 16:24:47,301 - DEBUG - Detected 110323 variants in 88673 reads
2012-10-07 16:24:47,855 - DEBUG - Detected 113416 variants in 66820 reads
2012-10-07 16:24:48,488 - DEBUG - Detected 116563 variants in 86761 reads
2012-10-07 16:24:49,093 - DEBUG - Detected 120381 variants in 84425 reads
2012-10-07 16:24:49,693 - DEBUG - Detected 123740 variants in 65135 reads
2012-10-07 16:24:50,317 - DEBUG - Detected 127405 variants in 72079 reads
2012-10-07 16:24:51,401 - DEBUG - Taking top 8 variants by coverage in window 9:17012614-17012615
2012-10-07 16:24:52,627 - DEBUG - Taking top 8 variants by coverage in window 9:17026293-17026294
2012-10-07 16:24:53,791 - DEBUG - Taking top 8 variants by coverage in window 9:17036913-17036914
2012-10-07 16:24:54,147 - DEBUG - Taking top 8 variants by coverage in window 9:17041090-17041091
2012-10-07 16:24:54,203 - DEBUG - Taking top 8 variants by coverage in window 9:17041136-17041137
2012-10-07 16:24:56,291 - DEBUG - Taking top 8 variants by coverage in window 9:17077525-17077526
2012-10-07 16:24:56,466 - DEBUG - Taking top 8 variants by coverage in window 9:17079648-17079649
2012-10-07 16:24:57,220 - DEBUG - Taking top 8 variants by coverage in window 9:17090463-17090464
2012-10-07 16:24:57,271 - DEBUG - Taking top 8 variants by coverage in window 9:17090509-17090510
2012-10-07 16:24:57,281 - DEBUG - Taking top 8 variants by coverage in window 9:17090510-17090511
2012-10-07 16:24:57,441 - DEBUG - Taking top 8 variants by coverage in window 9:17091721-17091739
2012-10-07 16:24:57,933 - DEBUG - Taking top 8 variants by coverage in window 9:17099266-17099267
2012-10-07 16:24:59,060 - DEBUG - Taking top 8 variants by coverage in window 9:17115904-17115910
2012-10-07 16:25:00,307 - DEBUG - Taking top 8 variants by coverage in window 9:17138243-17138246
2012-10-07 16:25:00,711 - DEBUG - Taking top 8 variants by coverage in window 9:17144377-17144378
2012-10-07 16:25:01,396 - DEBUG - Taking top 8 variants by coverage in window 9:17158402-17158403
2012-10-07 16:25:01,544 - DEBUG - Taking top 8 variants by coverage in window 9:17159617-17159620
2012-10-07 16:25:02,268 - DEBUG - Taking top 8 variants by coverage in window 9:17177099-17177100
2012-10-07 16:25:03,139 - DEBUG - Taking top 8 variants by coverage in window 9:17197908-17197909
2012-10-07 16:25:03,665 - DEBUG - Taking top 8 variants by coverage in window 9:17204794-17204805
2012-10-07 16:25:03,806 - DEBUG - Taking top 8 variants by coverage in window 9:17205578-17205587
2012-10-07 16:25:03,819 - DEBUG - Taking top 8 variants by coverage in window 9:17205589-17205590
2012-10-07 16:25:04,025 - DEBUG - Taking top 8 variants by coverage in window 9:17206490-17206492
2012-10-07 16:25:04,073 - DEBUG - Taking top 8 variants by coverage in window 9:17212696-17212699
2012-10-07 16:25:04,082 - DEBUG - Taking top 8 variants by coverage in window 9:17212711-17212712
2012-10-07 16:25:04,389 - DEBUG - Taking top 8 variants by coverage in window 9:17216799-17216804
2012-10-07 16:25:04,560 - DEBUG - Taking top 8 variants by coverage in window 9:17218724-17218727
2012-10-07 16:25:04,800 - DEBUG - Taking top 8 variants by coverage in window 9:17221139-17221140
2012-10-07 16:25:04,915 - DEBUG - Taking top 8 variants by coverage in window 9:17222566-17222568
2012-10-07 16:25:04,969 - DEBUG - Taking top 8 variants by coverage in window 9:17222690-17222695
2012-10-07 16:25:05,562 - DEBUG - Taking top 8 variants by coverage in window 9:17227689-17227703
2012-10-07 16:25:06,140 - DEBUG - Taking top 8 variants by coverage in window 9:17235906-17235907
2012-10-07 16:25:06,193 - DEBUG - Taking top 8 variants by coverage in window 9:17236547-17236548
2012-10-07 16:25:06,350 - DEBUG - Taking top 8 variants by coverage in window 9:17238981-17238982
2012-10-07 16:25:06,459 - DEBUG - Taking top 8 variants by coverage in window 9:17239951-17239952
2012-10-07 16:25:06,697 - DEBUG - Taking top 8 variants by coverage in window 9:17244699-17244707
2012-10-07 16:25:06,806 - DEBUG - Taking top 8 variants by coverage in window 9:17244711-17244712
2012-10-07 16:25:07,225 - DEBUG - Taking top 8 variants by coverage in window 9:17250080-17250081
2012-10-07 16:25:07,472 - DEBUG - Taking top 8 variants by coverage in window 9:17254905-17254925
2012-10-07 16:25:11,197 - DEBUG - Taking top 8 variants by coverage in window 9:17266169-17266170
2012-10-07 16:25:11,231 - DEBUG - Taking top 8 variants by coverage in window 9:17266507-17266508
2012-10-07 16:25:11,239 - DEBUG - Taking top 8 variants by coverage in window 9:17266521-17266522
2012-10-07 16:25:11,354 - DEBUG - Taking top 8 variants by coverage in window 9:17268255-17268257
2012-10-07 16:25:11,972 - DEBUG - Taking top 8 variants by coverage in window 9:17280777-17280781
2012-10-07 16:25:13,608 - DEBUG - Taking top 8 variants by coverage in window 9:17304197-17304198
2012-10-07 16:25:13,648 - DEBUG - Taking top 8 variants by coverage in window 9:17304216-17304218
2012-10-07 16:25:13,668 - DEBUG - Taking top 8 variants by coverage in window 9:17304220-17304221
2012-10-07 16:25:13,834 - DEBUG - Taking top 8 variants by coverage in window 9:17304648-17304649
2012-10-07 16:25:13,965 - DEBUG - Taking top 8 variants by coverage in window 9:17305678-17305679
2012-10-07 16:25:13,988 - DEBUG - Taking top 8 variants by coverage in window 9:17305718-17305719
2012-10-07 16:25:14,157 - DEBUG - Taking top 8 variants by coverage in window 9:17307099-17307102
2012-10-07 16:25:14,816 - DEBUG - Taking top 8 variants by coverage in window 9:17311209-17311215
2012-10-07 16:25:15,160 - DEBUG - Taking top 8 variants by coverage in window 9:17313352-17313353
2012-10-07 16:25:15,637 - DEBUG - Taking top 8 variants by coverage in window 9:17317941-17317942
2012-10-07 16:25:17,160 - DEBUG - Taking top 8 variants by coverage in window 9:17343357-17343358
2012-10-07 16:25:17,746 - DEBUG - Taking top 8 variants by coverage in window 9:17354156-17354165
2012-10-07 16:25:18,173 - DEBUG - Taking top 8 variants by coverage in window 9:17358737-17358740
2012-10-07 16:25:18,670 - DEBUG - Taking top 8 variants by coverage in window 9:17365611-17365632
2012-10-07 16:25:18,684 - DEBUG - Taking top 8 variants by coverage in window 9:17365635-17365636
2012-10-07 16:25:18,786 - DEBUG - Taking top 8 variants by coverage in window 9:17366252-17366253
2012-10-07 16:25:18,884 - DEBUG - Taking top 8 variants by coverage in window 9:17366511-17366512
2012-10-07 16:25:18,905 - DEBUG - Taking top 8 variants by coverage in window 9:17366521-17366523
2012-10-07 16:25:19,533 - DEBUG - Taking top 8 variants by coverage in window 9:17373342-17373343
2012-10-07 16:25:20,123 - DEBUG - Taking top 8 variants by coverage in window 9:17379148-17379149
2012-10-07 16:25:20,609 - DEBUG - Taking top 8 variants by coverage in window 9:17386201-17386204
2012-10-07 16:25:22,906 - DEBUG - Taking top 8 variants by coverage in window 9:17416993-17416995
2012-10-07 16:25:22,933 - DEBUG - Taking top 8 variants by coverage in window 9:17416998-17417013
2012-10-07 16:25:23,333 - DEBUG - Taking top 8 variants by coverage in window 9:17419918-17419920
2012-10-07 16:25:24,167 - DEBUG - Taking top 8 variants by coverage in window 9:17427506-17427508
2012-10-07 16:25:24,391 - DEBUG - Taking top 8 variants by coverage in window 9:17428982-17428983
2012-10-07 16:25:24,564 - DEBUG - Taking top 8 variants by coverage in window 9:17431419-17431420
2012-10-07 16:25:24,667 - DEBUG - Taking top 8 variants by coverage in window 9:17432522-17432523
2012-10-07 16:25:25,012 - DEBUG - Taking top 8 variants by coverage in window 9:17433403-17433409
2012-10-07 16:25:25,122 - DEBUG - Taking top 8 variants by coverage in window 9:17434591-17434592
2012-10-07 16:25:26,102 - DEBUG - Taking top 8 variants by coverage in window 9:17449667-17449668
2012-10-07 16:25:26,922 - DEBUG - Taking top 8 variants by coverage in window 9:17463269-17463277
2012-10-07 16:25:27,109 - DEBUG - Taking top 8 variants by coverage in window 9:17466476-17466477
2012-10-07 16:25:27,407 - DEBUG - Taking top 8 variants by coverage in window 9:17470857-17470858
2012-10-07 16:25:27,520 - DEBUG - Taking top 8 variants by coverage in window 9:17471261-17471262
2012-10-07 16:25:27,955 - DEBUG - Taking top 8 variants by coverage in window 9:17477636-17477637
2012-10-07 16:25:28,506 - DEBUG - Taking top 8 variants by coverage in window 9:17489714-17489715
2012-10-07 16:25:29,524 - DEBUG - Taking top 8 variants by coverage in window 9:17504459-17504461
2012-10-07 16:25:31,241 - DEBUG - Taking top 8 variants by coverage in window 9:17532679-17532680
2012-10-07 16:25:32,533 - DEBUG - Taking top 8 variants by coverage in window 9:17553248-17553249
2012-10-07 16:25:32,998 - DEBUG - Taking top 8 variants by coverage in window 9:17560903-17560904
2012-10-07 16:25:33,463 - DEBUG - Taking top 8 variants by coverage in window 9:17567387-17567388
2012-10-07 16:25:33,747 - DEBUG - Taking top 8 variants by coverage in window 9:17569330-17569336
2012-10-07 16:25:33,823 - DEBUG - Taking top 8 variants by coverage in window 9:17570687-17570688
2012-10-07 16:25:33,833 - DEBUG - Taking top 8 variants by coverage in window 9:17570694-17570695
2012-10-07 16:25:35,242 - DEBUG - Taking top 8 variants by coverage in window 9:17590806-17590807
2012-10-07 16:25:35,808 - DEBUG - Taking top 8 variants by coverage in window 9:17598791-17598792
2012-10-07 16:25:35,816 - DEBUG - Taking top 8 variants by coverage in window 9:17598792-17598793
2012-10-07 16:25:35,842 - DEBUG - Taking top 8 variants by coverage in window 9:17598795-17598796
2012-10-07 16:25:37,082 - DEBUG - Taking top 8 variants by coverage in window 9:17614680-17614681
2012-10-07 16:25:37,835 - DEBUG - Taking top 8 variants by coverage in window 9:17629221-17629228
2012-10-07 16:25:39,645 - DEBUG - Taking top 8 variants by coverage in window 9:17654508-17654509
2012-10-07 16:25:39,714 - DEBUG - Taking top 8 variants by coverage in window 9:17661127-17661128
2012-10-07 16:25:39,766 - DEBUG - Taking top 8 variants by coverage in window 9:17662094-17662102
2012-10-07 16:25:41,003 - DEBUG - Taking top 8 variants by coverage in window 9:17673950-17673951
2012-10-07 16:25:44,213 - DEBUG - Taking top 8 variants by coverage in window 9:17716534-17716535
2012-10-07 16:25:44,425 - DEBUG - Taking top 8 variants by coverage in window 9:17718916-17718925
2012-10-07 16:25:45,690 - DEBUG - Taking top 8 variants by coverage in window 9:17735280-17735281
2012-10-07 16:25:46,604 - DEBUG - Taking top 8 variants by coverage in window 9:17745382-17745386
2012-10-07 16:25:46,649 - DEBUG - Taking top 8 variants by coverage in window 9:17745406-17745412
2012-10-07 16:25:46,778 - DEBUG - Taking top 8 variants by coverage in window 9:17745842-17745843
2012-10-07 16:25:46,825 - DEBUG - Taking top 8 variants by coverage in window 9:17745884-17745885
2012-10-07 16:25:46,834 - DEBUG - Taking top 8 variants by coverage in window 9:17745885-17745886
2012-10-07 16:25:47,280 - DEBUG - Taking top 8 variants by coverage in window 9:17750480-17750484
2012-10-07 16:25:47,718 - DEBUG - Taking top 8 variants by coverage in window 9:17752815-17752816
2012-10-07 16:25:48,625 - DEBUG - Taking top 8 variants by coverage in window 9:17759583-17759584
2012-10-07 16:25:48,933 - DEBUG - Taking top 8 variants by coverage in window 9:17762962-17762963
2012-10-07 16:25:49,725 - DEBUG - Taking top 8 variants by coverage in window 9:17770895-17770896
2012-10-07 16:25:49,796 - DEBUG - Taking top 8 variants by coverage in window 9:17771983-17771987
2012-10-07 16:25:49,861 - DEBUG - Taking top 8 variants by coverage in window 9:17778317-17778318
2012-10-07 16:25:50,937 - DEBUG - Taking top 8 variants by coverage in window 9:17789090-17789091
2012-10-07 16:25:52,792 - DEBUG - Taking top 8 variants by coverage in window 9:17813448-17813449
2012-10-07 16:25:52,861 - DEBUG - Taking top 8 variants by coverage in window 9:17820443-17820446
2012-10-07 16:25:53,105 - DEBUG - Taking top 8 variants by coverage in window 9:17822288-17822294
2012-10-07 16:25:53,377 - DEBUG - Taking top 8 variants by coverage in window 9:17825684-17825685
2012-10-07 16:25:53,771 - DEBUG - Taking top 8 variants by coverage in window 9:17828139-17828140
2012-10-07 16:25:54,437 - DEBUG - Taking top 8 variants by coverage in window 9:17833261-17833262
2012-10-07 16:25:55,896 - DEBUG - Taking top 8 variants by coverage in window 9:17847387-17847388
2012-10-07 16:25:56,442 - DEBUG - Taking top 8 variants by coverage in window 9:17856534-17856535
2012-10-07 16:25:58,076 - DEBUG - Taking top 8 variants by coverage in window 9:17881142-17881149
2012-10-07 16:25:58,892 - DEBUG - Taking top 8 variants by coverage in window 9:17893693-17893694
2012-10-07 16:25:58,988 - DEBUG - Taking top 8 variants by coverage in window 9:17894138-17894139
2012-10-07 16:25:59,287 - DEBUG - Taking top 8 variants by coverage in window 9:17897741-17897742
2012-10-07 16:25:59,618 - DEBUG - Taking top 8 variants by coverage in window 9:17902593-17902595
2012-10-07 16:26:00,268 - DEBUG - Taking top 8 variants by coverage in window 9:17910809-17910810
2012-10-07 16:26:00,459 - DEBUG - Taking top 8 variants by coverage in window 9:17913241-17913244
2012-10-07 16:26:01,738 - DEBUG - Taking top 8 variants by coverage in window 9:17940789-17940790
2012-10-07 16:26:02,389 - DEBUG - Taking top 8 variants by coverage in window 9:17949359-17949360
2012-10-07 16:26:05,591 - DEBUG - Read 78903 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 16:26:05,803 - DEBUG - Read 84817 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 16:26:06,044 - DEBUG - Read 101202 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 16:26:06,296 - DEBUG - Read 97442 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 16:26:06,544 - DEBUG - Read 96705 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 16:26:06,768 - DEBUG - Read 91866 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 16:26:07,003 - DEBUG - Read 97240 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 16:26:07,220 - DEBUG - Read 83301 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 16:26:07,426 - DEBUG - Read 80216 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 16:26:07,647 - DEBUG - Read 86414 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 16:26:07,880 - DEBUG - Read 94291 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 16:26:08,080 - DEBUG - Read 81102 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 16:26:08,287 - DEBUG - Read 81061 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 16:26:08,501 - DEBUG - Read 90256 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 16:26:08,738 - DEBUG - Read 98721 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 16:26:08,939 - DEBUG - Read 76208 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 16:26:09,162 - DEBUG - Read 95700 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 16:26:09,395 - DEBUG - Read 93755 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 16:26:09,579 - DEBUG - Read 73858 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 16:26:09,793 - DEBUG - Read 80648 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 16:26:09,885 - DEBUG - Detected 20961 variants in 78903 reads
2012-10-07 16:26:10,035 - DEBUG - Detected 29894 variants in 84817 reads
2012-10-07 16:26:10,232 - DEBUG - Detected 36755 variants in 101202 reads
2012-10-07 16:26:10,454 - DEBUG - Detected 42826 variants in 97442 reads
2012-10-07 16:26:10,702 - DEBUG - Detected 48294 variants in 96705 reads
2012-10-07 16:26:10,970 - DEBUG - Detected 54783 variants in 91866 reads
2012-10-07 16:26:11,301 - DEBUG - Detected 66963 variants in 97240 reads
2012-10-07 16:26:11,647 - DEBUG - Detected 71509 variants in 83301 reads
2012-10-07 16:26:12,017 - DEBUG - Detected 76470 variants in 80216 reads
2012-10-07 16:26:12,412 - DEBUG - Detected 80753 variants in 86414 reads
2012-10-07 16:26:12,836 - DEBUG - Detected 84937 variants in 94291 reads
2012-10-07 16:26:13,266 - DEBUG - Detected 88224 variants in 81102 reads
2012-10-07 16:26:13,707 - DEBUG - Detected 91768 variants in 81061 reads
2012-10-07 16:26:14,176 - DEBUG - Detected 95434 variants in 90256 reads
2012-10-07 16:26:14,710 - DEBUG - Detected 101418 variants in 98721 reads
2012-10-07 16:26:15,211 - DEBUG - Detected 104835 variants in 76208 reads
2012-10-07 16:26:15,743 - DEBUG - Detected 107837 variants in 95700 reads
2012-10-07 16:26:16,288 - DEBUG - Detected 111198 variants in 93755 reads
2012-10-07 16:26:16,833 - DEBUG - Detected 114361 variants in 73858 reads
2012-10-07 16:26:17,401 - DEBUG - Detected 118065 variants in 80648 reads
2012-10-07 16:26:19,952 - DEBUG - Taking top 8 variants by coverage in window 9:18026018-18026019
2012-10-07 16:26:21,204 - DEBUG - Taking top 8 variants by coverage in window 9:18050096-18050097
2012-10-07 16:26:22,875 - DEBUG - Taking top 8 variants by coverage in window 9:18075289-18075290
2012-10-07 16:26:22,895 - DEBUG - Taking top 8 variants by coverage in window 9:18075316-18075317
2012-10-07 16:26:24,669 - DEBUG - Taking top 8 variants by coverage in window 9:18102835-18102843
2012-10-07 16:26:25,232 - DEBUG - Taking top 8 variants by coverage in window 9:18105506-18105508
2012-10-07 16:26:25,341 - DEBUG - Taking top 8 variants by coverage in window 9:18106461-18106468
2012-10-07 16:26:25,384 - DEBUG - Taking top 8 variants by coverage in window 9:18106626-18106627
2012-10-07 16:26:25,738 - DEBUG - Taking top 8 variants by coverage in window 9:18109733-18109734
2012-10-07 16:26:25,996 - DEBUG - Taking top 8 variants by coverage in window 9:18114274-18114275
2012-10-07 16:26:26,288 - DEBUG - Taking top 8 variants by coverage in window 9:18116938-18116942
2012-10-07 16:26:26,405 - DEBUG - Taking top 8 variants by coverage in window 9:18117220-18117221
2012-10-07 16:26:27,051 - DEBUG - Taking top 8 variants by coverage in window 9:18126568-18126569
2012-10-07 16:26:27,172 - DEBUG - Taking top 8 variants by coverage in window 9:18128661-18128663
2012-10-07 16:26:28,202 - DEBUG - Taking top 8 variants by coverage in window 9:18142377-18142378
2012-10-07 16:26:28,277 - DEBUG - Taking top 8 variants by coverage in window 9:18142949-18142956
2012-10-07 16:26:29,643 - DEBUG - Taking top 8 variants by coverage in window 9:18159831-18159832
2012-10-07 16:26:30,329 - DEBUG - Taking top 8 variants by coverage in window 9:18169830-18169831
2012-10-07 16:26:30,341 - DEBUG - Taking top 8 variants by coverage in window 9:18169843-18169844
2012-10-07 16:26:30,495 - DEBUG - Taking top 8 variants by coverage in window 9:18171267-18171268
2012-10-07 16:26:30,876 - DEBUG - Taking top 8 variants by coverage in window 9:18174288-18174291
2012-10-07 16:26:31,330 - DEBUG - Taking top 8 variants by coverage in window 9:18177627-18177628
2012-10-07 16:26:31,469 - DEBUG - Taking top 8 variants by coverage in window 9:18177943-18177944
2012-10-07 16:26:31,843 - DEBUG - Taking top 8 variants by coverage in window 9:18185989-18185990
2012-10-07 16:26:32,421 - DEBUG - Taking top 8 variants by coverage in window 9:18198493-18198494
2012-10-07 16:26:32,690 - DEBUG - Taking top 8 variants by coverage in window 9:18205868-18205869
2012-10-07 16:26:34,655 - DEBUG - Taking top 8 variants by coverage in window 9:18239973-18239974
2012-10-07 16:26:36,194 - DEBUG - Taking top 8 variants by coverage in window 9:18267223-18267232
2012-10-07 16:26:37,094 - DEBUG - Taking top 8 variants by coverage in window 9:18277810-18277811
2012-10-07 16:26:37,600 - DEBUG - Taking top 8 variants by coverage in window 9:18284230-18284231
2012-10-07 16:26:37,620 - DEBUG - Taking top 8 variants by coverage in window 9:18284264-18284268
2012-10-07 16:26:37,667 - DEBUG - Taking top 8 variants by coverage in window 9:18285629-18285630
2012-10-07 16:26:37,677 - DEBUG - Taking top 8 variants by coverage in window 9:18285668-18285669
2012-10-07 16:26:38,337 - DEBUG - Taking top 8 variants by coverage in window 9:18312424-18312425
2012-10-07 16:26:38,696 - DEBUG - Taking top 8 variants by coverage in window 9:18318064-18318067
2012-10-07 16:26:38,959 - DEBUG - Taking top 8 variants by coverage in window 9:18325845-18325846
2012-10-07 16:26:40,128 - DEBUG - Taking top 8 variants by coverage in window 9:18340664-18340665
2012-10-07 16:26:41,589 - DEBUG - Taking top 8 variants by coverage in window 9:18357996-18357997
2012-10-07 16:26:42,382 - DEBUG - Taking top 8 variants by coverage in window 9:18368322-18368324
2012-10-07 16:26:42,413 - DEBUG - Taking top 8 variants by coverage in window 9:18368329-18368330
2012-10-07 16:26:42,822 - DEBUG - Taking top 8 variants by coverage in window 9:18376789-18376790
2012-10-07 16:26:43,968 - DEBUG - Taking top 8 variants by coverage in window 9:18405086-18405087
2012-10-07 16:26:45,647 - DEBUG - Taking top 8 variants by coverage in window 9:18426525-18426526
2012-10-07 16:26:46,022 - DEBUG - Taking top 8 variants by coverage in window 9:18440372-18440373
2012-10-07 16:26:46,040 - DEBUG - Taking top 8 variants by coverage in window 9:18440396-18440397
2012-10-07 16:26:46,806 - DEBUG - Taking top 8 variants by coverage in window 9:18444049-18444050
2012-10-07 16:26:46,863 - DEBUG - Taking top 8 variants by coverage in window 9:18444063-18444064
2012-10-07 16:26:48,403 - DEBUG - Taking top 8 variants by coverage in window 9:18456262-18456263
2012-10-07 16:26:49,708 - DEBUG - Taking top 8 variants by coverage in window 9:18474634-18474635
2012-10-07 16:26:49,989 - DEBUG - Taking top 8 variants by coverage in window 9:18476557-18476561
2012-10-07 16:26:50,591 - DEBUG - Taking top 8 variants by coverage in window 9:18483702-18483703
2012-10-07 16:26:50,631 - DEBUG - Taking top 8 variants by coverage in window 9:18484357-18484358
2012-10-07 16:26:50,834 - DEBUG - Taking top 8 variants by coverage in window 9:18488369-18488370
2012-10-07 16:26:50,849 - DEBUG - Taking top 8 variants by coverage in window 9:18488390-18488391
2012-10-07 16:26:50,874 - DEBUG - Taking top 8 variants by coverage in window 9:18488652-18488653
2012-10-07 16:26:51,204 - DEBUG - Taking top 8 variants by coverage in window 9:18499711-18499721
2012-10-07 16:26:52,130 - DEBUG - Taking top 8 variants by coverage in window 9:18513822-18513823
2012-10-07 16:26:52,184 - DEBUG - Taking top 8 variants by coverage in window 9:18513886-18513887
2012-10-07 16:26:52,728 - DEBUG - Taking top 8 variants by coverage in window 9:18521519-18521520
2012-10-07 16:26:52,923 - DEBUG - Taking top 8 variants by coverage in window 9:18525341-18525342
2012-10-07 16:26:53,217 - DEBUG - Taking top 8 variants by coverage in window 9:18534751-18534752
2012-10-07 16:26:53,490 - DEBUG - Taking top 8 variants by coverage in window 9:18543137-18543138
2012-10-07 16:26:53,775 - DEBUG - Taking top 8 variants by coverage in window 9:18547841-18547842
2012-10-07 16:26:53,864 - DEBUG - Taking top 8 variants by coverage in window 9:18548230-18548231
2012-10-07 16:26:54,125 - DEBUG - Taking top 8 variants by coverage in window 9:18552537-18552538
2012-10-07 16:26:54,332 - DEBUG - Taking top 8 variants by coverage in window 9:18555128-18555129
2012-10-07 16:26:54,440 - DEBUG - Taking top 8 variants by coverage in window 9:18556455-18556466
2012-10-07 16:26:55,003 - DEBUG - Taking top 8 variants by coverage in window 9:18562298-18562299
2012-10-07 16:26:55,022 - DEBUG - Taking top 8 variants by coverage in window 9:18562310-18562311
2012-10-07 16:26:56,699 - DEBUG - Taking top 8 variants by coverage in window 9:18588433-18588434
2012-10-07 16:26:56,831 - DEBUG - Taking top 8 variants by coverage in window 9:18589119-18589120
2012-10-07 16:26:57,172 - DEBUG - Taking top 8 variants by coverage in window 9:18594227-18594228
2012-10-07 16:26:57,182 - DEBUG - Taking top 8 variants by coverage in window 9:18594230-18594231
2012-10-07 16:26:57,294 - DEBUG - Taking top 8 variants by coverage in window 9:18602513-18602514
2012-10-07 16:26:57,743 - DEBUG - Taking top 8 variants by coverage in window 9:18607254-18607255
2012-10-07 16:26:58,809 - DEBUG - Taking top 8 variants by coverage in window 9:18637363-18637364
2012-10-07 16:26:58,899 - DEBUG - Taking top 8 variants by coverage in window 9:18638653-18638656
2012-10-07 16:26:59,507 - DEBUG - Taking top 8 variants by coverage in window 9:18645509-18645510
2012-10-07 16:27:00,007 - DEBUG - Taking top 8 variants by coverage in window 9:18650734-18650735
2012-10-07 16:27:00,663 - DEBUG - Taking top 8 variants by coverage in window 9:18658467-18658468
2012-10-07 16:27:00,788 - DEBUG - Taking top 8 variants by coverage in window 9:18665063-18665064
2012-10-07 16:27:01,225 - DEBUG - Taking top 8 variants by coverage in window 9:18681876-18681877
2012-10-07 16:27:01,639 - DEBUG - Taking top 8 variants by coverage in window 9:18694170-18694174
2012-10-07 16:27:02,475 - DEBUG - Taking top 8 variants by coverage in window 9:18711395-18711396
2012-10-07 16:27:04,726 - DEBUG - Taking top 8 variants by coverage in window 9:18744952-18744953
2012-10-07 16:27:04,858 - DEBUG - Taking top 8 variants by coverage in window 9:18747552-18747553
2012-10-07 16:27:05,050 - DEBUG - Taking top 8 variants by coverage in window 9:18758653-18758662
2012-10-07 16:27:05,474 - DEBUG - Taking top 8 variants by coverage in window 9:18766694-18766696
2012-10-07 16:27:05,685 - DEBUG - Taking top 8 variants by coverage in window 9:18767335-18767336
2012-10-07 16:27:06,158 - DEBUG - Taking top 8 variants by coverage in window 9:18774389-18774393
2012-10-07 16:27:06,692 - DEBUG - Taking top 8 variants by coverage in window 9:18779818-18779819
2012-10-07 16:27:08,422 - DEBUG - Taking top 8 variants by coverage in window 9:18831964-18831966
2012-10-07 16:27:08,502 - DEBUG - Taking top 8 variants by coverage in window 9:18833411-18833417
2012-10-07 16:27:08,546 - DEBUG - Taking top 8 variants by coverage in window 9:18833917-18833918
2012-10-07 16:27:08,560 - DEBUG - Taking top 8 variants by coverage in window 9:18833933-18833934
2012-10-07 16:27:09,097 - DEBUG - Taking top 8 variants by coverage in window 9:18853880-18853882
2012-10-07 16:27:09,446 - DEBUG - Taking top 8 variants by coverage in window 9:18860041-18860042
2012-10-07 16:27:09,884 - DEBUG - Taking top 8 variants by coverage in window 9:18864829-18864830
2012-10-07 16:27:10,744 - DEBUG - Taking top 8 variants by coverage in window 9:18875294-18875295
2012-10-07 16:27:10,829 - DEBUG - Taking top 8 variants by coverage in window 9:18876233-18876234
2012-10-07 16:27:10,851 - DEBUG - Taking top 8 variants by coverage in window 9:18876421-18876422
2012-10-07 16:27:11,062 - DEBUG - Taking top 8 variants by coverage in window 9:18881131-18881132
2012-10-07 16:27:11,439 - DEBUG - Taking top 8 variants by coverage in window 9:18889182-18889183
2012-10-07 16:27:11,859 - DEBUG - Taking top 8 variants by coverage in window 9:18892804-18892805
2012-10-07 16:27:11,926 - DEBUG - Taking top 8 variants by coverage in window 9:18893163-18893165
2012-10-07 16:27:11,997 - DEBUG - Taking top 8 variants by coverage in window 9:18893576-18893577
2012-10-07 16:27:12,013 - DEBUG - Taking top 8 variants by coverage in window 9:18893598-18893599
2012-10-07 16:27:13,306 - DEBUG - Taking top 8 variants by coverage in window 9:18939159-18939160
2012-10-07 16:27:13,759 - DEBUG - Taking top 8 variants by coverage in window 9:18956089-18956092
2012-10-07 16:27:13,793 - DEBUG - Taking top 8 variants by coverage in window 9:18956100-18956109
2012-10-07 16:27:14,026 - DEBUG - Taking top 8 variants by coverage in window 9:18963410-18963424
2012-10-07 16:27:14,281 - DEBUG - Taking top 8 variants by coverage in window 9:18973420-18973421
2012-10-07 16:27:14,302 - DEBUG - Taking top 8 variants by coverage in window 9:18973616-18973617
2012-10-07 16:27:14,577 - DEBUG - Taking top 8 variants by coverage in window 9:18982842-18982843
2012-10-07 16:27:14,937 - DEBUG - Taking top 8 variants by coverage in window 9:18996317-18996318
2012-10-07 16:27:15,792 - DEBUG - Read 69630 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 16:27:15,988 - DEBUG - Read 74886 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 16:27:16,201 - DEBUG - Read 87467 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 16:27:16,433 - DEBUG - Read 86119 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 16:27:16,662 - DEBUG - Read 85492 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 16:27:16,866 - DEBUG - Read 79572 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 16:27:17,081 - DEBUG - Read 85656 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 16:27:17,282 - DEBUG - Read 73602 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 16:27:17,472 - DEBUG - Read 70414 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 16:27:17,675 - DEBUG - Read 74979 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 16:27:17,887 - DEBUG - Read 80801 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 16:27:18,069 - DEBUG - Read 69386 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 16:27:18,262 - DEBUG - Read 70643 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 16:27:18,462 - DEBUG - Read 80344 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 16:27:18,681 - DEBUG - Read 86945 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 16:27:18,868 - DEBUG - Read 67713 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 16:27:19,075 - DEBUG - Read 84612 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 16:27:19,293 - DEBUG - Read 83297 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 16:27:19,534 - DEBUG - Read 64969 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 16:27:19,730 - DEBUG - Read 71198 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 16:27:19,811 - DEBUG - Detected 17189 variants in 69630 reads
2012-10-07 16:27:19,929 - DEBUG - Detected 24727 variants in 74886 reads
2012-10-07 16:27:20,083 - DEBUG - Detected 30820 variants in 87467 reads
2012-10-07 16:27:20,258 - DEBUG - Detected 36224 variants in 86119 reads
2012-10-07 16:27:20,451 - DEBUG - Detected 40958 variants in 85492 reads
2012-10-07 16:27:20,658 - DEBUG - Detected 45351 variants in 79572 reads
2012-10-07 16:27:20,893 - DEBUG - Detected 55415 variants in 85656 reads
2012-10-07 16:27:21,158 - DEBUG - Detected 59350 variants in 73602 reads
2012-10-07 16:27:21,439 - DEBUG - Detected 63573 variants in 70414 reads
2012-10-07 16:27:21,742 - DEBUG - Detected 67524 variants in 74979 reads
2012-10-07 16:27:22,090 - DEBUG - Detected 71033 variants in 80801 reads
2012-10-07 16:27:22,416 - DEBUG - Detected 73803 variants in 69386 reads
2012-10-07 16:27:22,754 - DEBUG - Detected 76791 variants in 70643 reads
2012-10-07 16:27:23,114 - DEBUG - Detected 79774 variants in 80344 reads
2012-10-07 16:27:23,497 - DEBUG - Detected 85192 variants in 86945 reads
2012-10-07 16:27:23,886 - DEBUG - Detected 88194 variants in 67713 reads
2012-10-07 16:27:24,300 - DEBUG - Detected 90857 variants in 84612 reads
2012-10-07 16:27:24,730 - DEBUG - Detected 94313 variants in 83297 reads
2012-10-07 16:27:25,148 - DEBUG - Detected 97244 variants in 64969 reads
2012-10-07 16:27:25,627 - DEBUG - Detected 100377 variants in 71198 reads
2012-10-07 16:27:26,400 - DEBUG - Taking top 8 variants by coverage in window 9:19005345-19005346
2012-10-07 16:27:26,750 - DEBUG - Taking top 8 variants by coverage in window 9:19016175-19016176
2012-10-07 16:27:27,007 - DEBUG - Taking top 8 variants by coverage in window 9:19019781-19019793
2012-10-07 16:27:27,890 - DEBUG - Taking top 8 variants by coverage in window 9:19045437-19045438
2012-10-07 16:27:27,905 - DEBUG - Taking top 8 variants by coverage in window 9:19045448-19045452
2012-10-07 16:27:28,229 - DEBUG - Taking top 8 variants by coverage in window 9:19057001-19057002
2012-10-07 16:27:28,345 - DEBUG - Taking top 8 variants by coverage in window 9:19061818-19061819
2012-10-07 16:27:28,473 - DEBUG - Taking top 8 variants by coverage in window 9:19071285-19071290
2012-10-07 16:27:28,488 - DEBUG - Taking top 8 variants by coverage in window 9:19071295-19071296
2012-10-07 16:27:28,855 - DEBUG - Taking top 8 variants by coverage in window 9:19077404-19077405
2012-10-07 16:27:28,925 - DEBUG - Taking top 8 variants by coverage in window 9:19079085-19079086
2012-10-07 16:27:30,136 - DEBUG - Taking top 8 variants by coverage in window 9:19134011-19134012
2012-10-07 16:27:30,241 - DEBUG - Taking top 8 variants by coverage in window 9:19136161-19136162
2012-10-07 16:27:30,466 - DEBUG - Taking top 8 variants by coverage in window 9:19142454-19142456
2012-10-07 16:27:30,624 - DEBUG - Taking top 8 variants by coverage in window 9:19145277-19145278
2012-10-07 16:27:30,685 - DEBUG - Taking top 8 variants by coverage in window 9:19146949-19146953
2012-10-07 16:27:30,741 - DEBUG - Taking top 8 variants by coverage in window 9:19147790-19147791
2012-10-07 16:27:31,372 - DEBUG - Taking top 8 variants by coverage in window 9:19172041-19172042
2012-10-07 16:27:31,925 - DEBUG - Taking top 8 variants by coverage in window 9:19203725-19203733
2012-10-07 16:27:31,954 - DEBUG - Taking top 8 variants by coverage in window 9:19203734-19203738
2012-10-07 16:27:32,002 - DEBUG - Taking top 8 variants by coverage in window 9:19203779-19203780
2012-10-07 16:27:32,063 - DEBUG - Taking top 8 variants by coverage in window 9:19204713-19204715
2012-10-07 16:27:32,100 - DEBUG - Taking top 8 variants by coverage in window 9:19205715-19205716
2012-10-07 16:27:32,369 - DEBUG - Taking top 8 variants by coverage in window 9:19215316-19215317
2012-10-07 16:27:33,034 - DEBUG - Taking top 8 variants by coverage in window 9:19229722-19229724
2012-10-07 16:27:33,070 - DEBUG - Taking top 8 variants by coverage in window 9:19230365-19230366
2012-10-07 16:27:33,253 - DEBUG - Taking top 8 variants by coverage in window 9:19232915-19232916
2012-10-07 16:27:33,512 - DEBUG - Taking top 8 variants by coverage in window 9:19240876-19240877
2012-10-07 16:27:33,521 - DEBUG - Taking top 8 variants by coverage in window 9:19240878-19240881
2012-10-07 16:27:33,601 - DEBUG - Taking top 8 variants by coverage in window 9:19241540-19241541
2012-10-07 16:27:33,699 - DEBUG - Taking top 8 variants by coverage in window 9:19242678-19242679
2012-10-07 16:27:34,835 - DEBUG - Taking top 8 variants by coverage in window 9:19266784-19266785
2012-10-07 16:27:35,028 - DEBUG - Taking top 8 variants by coverage in window 9:19271309-19271310
2012-10-07 16:27:35,052 - DEBUG - Taking top 8 variants by coverage in window 9:19272846-19272855
2012-10-07 16:27:35,118 - DEBUG - Taking top 8 variants by coverage in window 9:19273387-19273388
2012-10-07 16:27:35,494 - DEBUG - Taking top 8 variants by coverage in window 9:19279432-19279433
2012-10-07 16:27:35,735 - DEBUG - Taking top 8 variants by coverage in window 9:19284304-19284305
2012-10-07 16:27:35,844 - DEBUG - Taking top 8 variants by coverage in window 9:19288501-19288502
2012-10-07 16:27:35,970 - DEBUG - Taking top 8 variants by coverage in window 9:19290213-19290214
2012-10-07 16:27:36,316 - DEBUG - Taking top 8 variants by coverage in window 9:19299212-19299213
2012-10-07 16:27:36,866 - DEBUG - Taking top 8 variants by coverage in window 9:19308086-19308087
2012-10-07 16:27:37,187 - DEBUG - Taking top 8 variants by coverage in window 9:19321176-19321177
2012-10-07 16:27:37,418 - DEBUG - Taking top 8 variants by coverage in window 9:19325238-19325239
2012-10-07 16:27:37,426 - DEBUG - Taking top 8 variants by coverage in window 9:19325240-19325244
2012-10-07 16:27:37,719 - DEBUG - Taking top 8 variants by coverage in window 9:19338062-19338063
2012-10-07 16:27:38,496 - DEBUG - Taking top 8 variants by coverage in window 9:19370021-19370022
2012-10-07 16:27:38,569 - DEBUG - Taking top 8 variants by coverage in window 9:19371908-19371910
2012-10-07 16:27:39,020 - DEBUG - Taking top 8 variants by coverage in window 9:19377515-19377516
2012-10-07 16:27:39,711 - DEBUG - Taking top 8 variants by coverage in window 9:19384727-19384729
2012-10-07 16:27:40,720 - DEBUG - Taking top 8 variants by coverage in window 9:19387962-19387963
2012-10-07 16:27:41,254 - DEBUG - Taking top 8 variants by coverage in window 9:19393034-19393035
2012-10-07 16:27:41,283 - DEBUG - Taking top 8 variants by coverage in window 9:19393062-19393063
2012-10-07 16:27:41,856 - DEBUG - Taking top 8 variants by coverage in window 9:19398816-19398819
2012-10-07 16:27:41,934 - DEBUG - Taking top 8 variants by coverage in window 9:19406085-19406098
2012-10-07 16:27:42,068 - DEBUG - Taking top 8 variants by coverage in window 9:19413161-19413162
2012-10-07 16:27:42,884 - DEBUG - Taking top 8 variants by coverage in window 9:19425205-19425206
2012-10-07 16:27:43,668 - DEBUG - Taking top 8 variants by coverage in window 9:19432657-19432661
2012-10-07 16:27:43,814 - DEBUG - Taking top 8 variants by coverage in window 9:19432970-19432971
2012-10-07 16:27:44,022 - DEBUG - Taking top 8 variants by coverage in window 9:19434728-19434729
2012-10-07 16:27:44,097 - DEBUG - Taking top 8 variants by coverage in window 9:19435792-19435793
2012-10-07 16:27:44,107 - DEBUG - Taking top 8 variants by coverage in window 9:19435809-19435810
2012-10-07 16:27:44,249 - DEBUG - Taking top 8 variants by coverage in window 9:19437537-19437538
2012-10-07 16:27:44,299 - DEBUG - Taking top 8 variants by coverage in window 9:19443841-19443842
2012-10-07 16:27:44,613 - DEBUG - Taking top 8 variants by coverage in window 9:19447746-19447747
2012-10-07 16:27:44,816 - DEBUG - Taking top 8 variants by coverage in window 9:19452855-19452858
2012-10-07 16:27:47,019 - DEBUG - Taking top 8 variants by coverage in window 9:19495077-19495080
2012-10-07 16:27:47,065 - DEBUG - Taking top 8 variants by coverage in window 9:19495085-19495087
2012-10-07 16:27:47,266 - DEBUG - Taking top 8 variants by coverage in window 9:19497403-19497406
2012-10-07 16:27:48,680 - DEBUG - Taking top 8 variants by coverage in window 9:19529835-19529836
2012-10-07 16:27:49,162 - DEBUG - Taking top 8 variants by coverage in window 9:19534184-19534193
2012-10-07 16:27:51,722 - DEBUG - Taking top 8 variants by coverage in window 9:19580164-19580170
2012-10-07 16:27:51,827 - DEBUG - Taking top 8 variants by coverage in window 9:19581435-19581436
2012-10-07 16:27:53,072 - DEBUG - Taking top 8 variants by coverage in window 9:19603903-19603904
2012-10-07 16:27:55,485 - DEBUG - Taking top 8 variants by coverage in window 9:19656368-19656374
2012-10-07 16:27:55,498 - DEBUG - Taking top 8 variants by coverage in window 9:19656377-19656378
2012-10-07 16:27:56,586 - DEBUG - Taking top 8 variants by coverage in window 9:19689206-19689210
2012-10-07 16:27:57,694 - DEBUG - Taking top 8 variants by coverage in window 9:19724391-19724392
2012-10-07 16:27:58,012 - DEBUG - Taking top 8 variants by coverage in window 9:19736099-19736100
2012-10-07 16:27:59,770 - DEBUG - Taking top 8 variants by coverage in window 9:19780972-19780973
2012-10-07 16:27:59,864 - DEBUG - Taking top 8 variants by coverage in window 9:19781178-19781179
2012-10-07 16:28:00,438 - DEBUG - Taking top 8 variants by coverage in window 9:19799922-19799925
2012-10-07 16:28:00,472 - DEBUG - Taking top 8 variants by coverage in window 9:19800045-19800046
2012-10-07 16:28:00,489 - DEBUG - Taking top 8 variants by coverage in window 9:19800134-19800135
2012-10-07 16:28:00,588 - DEBUG - Taking top 8 variants by coverage in window 9:19800727-19800728
2012-10-07 16:28:00,689 - DEBUG - Taking top 8 variants by coverage in window 9:19801309-19801310
2012-10-07 16:28:01,111 - DEBUG - Taking top 8 variants by coverage in window 9:19807230-19807231
2012-10-07 16:28:01,127 - DEBUG - Taking top 8 variants by coverage in window 9:19807234-19807235
2012-10-07 16:28:01,211 - DEBUG - Taking top 8 variants by coverage in window 9:19808579-19808581
2012-10-07 16:28:01,490 - DEBUG - Taking top 8 variants by coverage in window 9:19813059-19813060
2012-10-07 16:28:01,775 - DEBUG - Taking top 8 variants by coverage in window 9:19815848-19815850
2012-10-07 16:28:02,059 - DEBUG - Taking top 8 variants by coverage in window 9:19826116-19826132
2012-10-07 16:28:02,337 - DEBUG - Taking top 8 variants by coverage in window 9:19831270-19831271
2012-10-07 16:28:02,830 - DEBUG - Taking top 8 variants by coverage in window 9:19843990-19843991
2012-10-07 16:28:04,051 - DEBUG - Taking top 8 variants by coverage in window 9:19876464-19876465
2012-10-07 16:28:04,571 - DEBUG - Taking top 8 variants by coverage in window 9:19891109-19891110
2012-10-07 16:28:04,584 - DEBUG - Taking top 8 variants by coverage in window 9:19891112-19891113
2012-10-07 16:28:04,866 - DEBUG - Taking top 8 variants by coverage in window 9:19899480-19899481
2012-10-07 16:28:05,167 - DEBUG - Taking top 8 variants by coverage in window 9:19910134-19910135
2012-10-07 16:28:05,185 - DEBUG - Taking top 8 variants by coverage in window 9:19910136-19910137
2012-10-07 16:28:05,278 - DEBUG - Taking top 8 variants by coverage in window 9:19911208-19911209
2012-10-07 16:28:05,299 - DEBUG - Taking top 8 variants by coverage in window 9:19911230-19911231
2012-10-07 16:28:05,604 - DEBUG - Taking top 8 variants by coverage in window 9:19922320-19922332
2012-10-07 16:28:05,628 - DEBUG - Taking top 8 variants by coverage in window 9:19922341-19922342
2012-10-07 16:28:06,123 - DEBUG - Taking top 8 variants by coverage in window 9:19930006-19930008
2012-10-07 16:28:06,134 - DEBUG - Taking top 8 variants by coverage in window 9:19930010-19930011
2012-10-07 16:28:06,146 - DEBUG - Taking top 8 variants by coverage in window 9:19930027-19930028
2012-10-07 16:28:06,735 - DEBUG - Taking top 8 variants by coverage in window 9:19944183-19944184
2012-10-07 16:28:06,798 - DEBUG - Taking top 8 variants by coverage in window 9:19944956-19944965
2012-10-07 16:28:06,992 - DEBUG - Taking top 8 variants by coverage in window 9:19946913-19946914
2012-10-07 16:28:07,006 - DEBUG - Taking top 8 variants by coverage in window 9:19946916-19946917
2012-10-07 16:28:07,265 - DEBUG - Taking top 8 variants by coverage in window 9:19950969-19950970
2012-10-07 16:28:07,310 - DEBUG - Taking top 8 variants by coverage in window 9:19951001-19951003
2012-10-07 16:28:07,507 - DEBUG - Taking top 8 variants by coverage in window 9:19951658-19951659
2012-10-07 16:28:08,436 - DEBUG - Taking top 8 variants by coverage in window 9:19984627-19984628
2012-10-07 16:28:09,726 - DEBUG - Read 97955 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 16:28:09,985 - DEBUG - Read 107710 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 16:28:10,259 - DEBUG - Read 121649 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 16:28:10,573 - DEBUG - Read 125572 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 16:28:10,865 - DEBUG - Read 115213 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 16:28:11,124 - DEBUG - Read 110613 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 16:28:11,396 - DEBUG - Read 117167 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 16:28:11,663 - DEBUG - Read 107462 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 16:28:11,914 - DEBUG - Read 102864 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 16:28:12,169 - DEBUG - Read 100388 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 16:28:12,446 - DEBUG - Read 114256 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 16:28:12,694 - DEBUG - Read 103857 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 16:28:12,948 - DEBUG - Read 104138 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 16:28:13,204 - DEBUG - Read 115765 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 16:28:13,489 - DEBUG - Read 124496 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 16:28:13,727 - DEBUG - Read 95397 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 16:28:14,057 - DEBUG - Read 118329 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 16:28:14,327 - DEBUG - Read 112175 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 16:28:14,564 - DEBUG - Read 102200 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 16:28:14,810 - DEBUG - Read 96233 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 16:28:14,922 - DEBUG - Detected 22403 variants in 97955 reads
2012-10-07 16:28:15,093 - DEBUG - Detected 31430 variants in 107710 reads
2012-10-07 16:28:15,316 - DEBUG - Detected 40318 variants in 121649 reads
2012-10-07 16:28:15,582 - DEBUG - Detected 47563 variants in 125572 reads
2012-10-07 16:28:15,873 - DEBUG - Detected 53855 variants in 115213 reads
2012-10-07 16:28:16,185 - DEBUG - Detected 59684 variants in 110613 reads
2012-10-07 16:28:16,544 - DEBUG - Detected 72963 variants in 117167 reads
2012-10-07 16:28:16,986 - DEBUG - Detected 78232 variants in 107462 reads
2012-10-07 16:28:17,409 - DEBUG - Detected 84164 variants in 102864 reads
2012-10-07 16:28:17,848 - DEBUG - Detected 88986 variants in 100388 reads
2012-10-07 16:28:18,312 - DEBUG - Detected 94128 variants in 114256 reads
2012-10-07 16:28:18,816 - DEBUG - Detected 98544 variants in 103857 reads
2012-10-07 16:28:19,339 - DEBUG - Detected 102980 variants in 104138 reads
2012-10-07 16:28:19,944 - DEBUG - Detected 108041 variants in 115765 reads
2012-10-07 16:28:20,538 - DEBUG - Detected 116403 variants in 124496 reads
2012-10-07 16:28:21,145 - DEBUG - Detected 120298 variants in 95397 reads
2012-10-07 16:28:21,796 - DEBUG - Detected 124232 variants in 118329 reads
2012-10-07 16:28:22,462 - DEBUG - Detected 128519 variants in 112175 reads
2012-10-07 16:28:23,188 - DEBUG - Detected 132759 variants in 102200 reads
2012-10-07 16:28:23,877 - DEBUG - Detected 137167 variants in 96233 reads
2012-10-07 16:28:25,058 - DEBUG - Taking top 8 variants by coverage in window 9:20004166-20004169
2012-10-07 16:28:25,434 - DEBUG - Taking top 8 variants by coverage in window 9:20010953-20010961
2012-10-07 16:28:25,600 - DEBUG - Taking top 8 variants by coverage in window 9:20014459-20014461
2012-10-07 16:28:26,676 - DEBUG - Taking top 8 variants by coverage in window 9:20039516-20039517
2012-10-07 16:28:26,737 - DEBUG - Taking top 8 variants by coverage in window 9:20040829-20040830
2012-10-07 16:28:26,998 - DEBUG - Taking top 8 variants by coverage in window 9:20045360-20045361
2012-10-07 16:28:27,273 - DEBUG - Taking top 8 variants by coverage in window 9:20047497-20047498
2012-10-07 16:28:27,892 - DEBUG - Taking top 8 variants by coverage in window 9:20056746-20056747
2012-10-07 16:28:28,854 - DEBUG - Taking top 8 variants by coverage in window 9:20084955-20084959
2012-10-07 16:28:29,111 - DEBUG - Taking top 8 variants by coverage in window 9:20094126-20094127
2012-10-07 16:28:29,589 - DEBUG - Taking top 8 variants by coverage in window 9:20101527-20101528
2012-10-07 16:28:29,713 - DEBUG - Taking top 8 variants by coverage in window 9:20104252-20104263
2012-10-07 16:28:30,048 - DEBUG - Taking top 8 variants by coverage in window 9:20114808-20114809
2012-10-07 16:28:31,262 - DEBUG - Taking top 8 variants by coverage in window 9:20151195-20151201
2012-10-07 16:28:31,296 - DEBUG - Taking top 8 variants by coverage in window 9:20151231-20151232
2012-10-07 16:28:31,406 - DEBUG - Taking top 8 variants by coverage in window 9:20154348-20154349
2012-10-07 16:28:31,694 - DEBUG - Taking top 8 variants by coverage in window 9:20165546-20165547
2012-10-07 16:28:32,015 - DEBUG - Taking top 8 variants by coverage in window 9:20170750-20170753
2012-10-07 16:28:32,066 - DEBUG - Taking top 8 variants by coverage in window 9:20171713-20171714
2012-10-07 16:28:32,257 - DEBUG - Taking top 8 variants by coverage in window 9:20179381-20179383
2012-10-07 16:28:33,587 - DEBUG - Taking top 8 variants by coverage in window 9:20197598-20197599
2012-10-07 16:28:33,984 - DEBUG - Taking top 8 variants by coverage in window 9:20205410-20205412
2012-10-07 16:28:34,008 - DEBUG - Taking top 8 variants by coverage in window 9:20205615-20205616
2012-10-07 16:28:34,317 - DEBUG - Taking top 8 variants by coverage in window 9:20214081-20214083
2012-10-07 16:28:35,688 - DEBUG - Taking top 8 variants by coverage in window 9:20235058-20235059
2012-10-07 16:28:35,766 - DEBUG - Taking top 8 variants by coverage in window 9:20235598-20235599
2012-10-07 16:28:35,837 - DEBUG - Taking top 8 variants by coverage in window 9:20236561-20236562
2012-10-07 16:28:36,940 - DEBUG - Taking top 8 variants by coverage in window 9:20268561-20268562
2012-10-07 16:28:36,996 - DEBUG - Taking top 8 variants by coverage in window 9:20268755-20268756
2012-10-07 16:28:37,144 - DEBUG - Taking top 8 variants by coverage in window 9:20271683-20271684
2012-10-07 16:28:37,493 - DEBUG - Taking top 8 variants by coverage in window 9:20279240-20279241
2012-10-07 16:28:37,606 - DEBUG - Taking top 8 variants by coverage in window 9:20280761-20280762
2012-10-07 16:28:37,760 - DEBUG - Taking top 8 variants by coverage in window 9:20282903-20282904
2012-10-07 16:28:38,290 - DEBUG - Taking top 8 variants by coverage in window 9:20298064-20298065
2012-10-07 16:28:38,318 - DEBUG - Taking top 8 variants by coverage in window 9:20298127-20298128
2012-10-07 16:28:38,812 - DEBUG - Taking top 8 variants by coverage in window 9:20313621-20313625
2012-10-07 16:28:38,867 - DEBUG - Taking top 8 variants by coverage in window 9:20313906-20313907
2012-10-07 16:28:39,488 - DEBUG - Taking top 8 variants by coverage in window 9:20326969-20326974
2012-10-07 16:28:39,591 - DEBUG - Taking top 8 variants by coverage in window 9:20328713-20328715
2012-10-07 16:28:39,712 - DEBUG - Taking top 8 variants by coverage in window 9:20330531-20330534
2012-10-07 16:28:39,744 - DEBUG - Taking top 8 variants by coverage in window 9:20330714-20330715
2012-10-07 16:28:40,103 - DEBUG - Taking top 8 variants by coverage in window 9:20336927-20336928
2012-10-07 16:28:40,306 - DEBUG - Taking top 8 variants by coverage in window 9:20341548-20341549
2012-10-07 16:28:40,400 - DEBUG - Taking top 8 variants by coverage in window 9:20342707-20342708
2012-10-07 16:28:40,839 - DEBUG - Taking top 8 variants by coverage in window 9:20354662-20354666
2012-10-07 16:28:42,067 - DEBUG - Taking top 8 variants by coverage in window 9:20372081-20372082
2012-10-07 16:28:42,295 - DEBUG - Taking top 8 variants by coverage in window 9:20374711-20374713
2012-10-07 16:28:42,357 - DEBUG - Taking top 8 variants by coverage in window 9:20375563-20375564
2012-10-07 16:28:42,690 - DEBUG - Taking top 8 variants by coverage in window 9:20378604-20378605
2012-10-07 16:28:43,368 - DEBUG - Taking top 8 variants by coverage in window 9:20385576-20385577
2012-10-07 16:28:44,383 - DEBUG - Taking top 8 variants by coverage in window 9:20397188-20397189
2012-10-07 16:28:44,614 - DEBUG - Taking top 8 variants by coverage in window 9:20403462-20403464
2012-10-07 16:28:44,642 - DEBUG - Taking top 8 variants by coverage in window 9:20403468-20403469
2012-10-07 16:28:45,145 - DEBUG - Taking top 8 variants by coverage in window 9:20411273-20411274
2012-10-07 16:28:45,333 - DEBUG - Taking top 8 variants by coverage in window 9:20413404-20413405
2012-10-07 16:28:46,053 - DEBUG - Taking top 8 variants by coverage in window 9:20420086-20420087
2012-10-07 16:28:46,152 - DEBUG - Taking top 8 variants by coverage in window 9:20421567-20421568
2012-10-07 16:28:46,187 - DEBUG - Taking top 8 variants by coverage in window 9:20421586-20421587
2012-10-07 16:28:46,816 - DEBUG - Taking top 8 variants by coverage in window 9:20435082-20435085
2012-10-07 16:28:47,137 - DEBUG - Taking top 8 variants by coverage in window 9:20439521-20439534
2012-10-07 16:28:47,412 - DEBUG - Taking top 8 variants by coverage in window 9:20445233-20445234
2012-10-07 16:28:47,638 - DEBUG - Taking top 8 variants by coverage in window 9:20450823-20450824
2012-10-07 16:28:47,927 - DEBUG - Taking top 8 variants by coverage in window 9:20457961-20457962
2012-10-07 16:28:47,947 - DEBUG - Taking top 8 variants by coverage in window 9:20458004-20458005
2012-10-07 16:28:47,958 - DEBUG - Taking top 8 variants by coverage in window 9:20458028-20458029
2012-10-07 16:28:48,501 - DEBUG - Taking top 8 variants by coverage in window 9:20465379-20465380
2012-10-07 16:28:49,211 - DEBUG - Taking top 8 variants by coverage in window 9:20477463-20477464
2012-10-07 16:28:49,245 - DEBUG - Taking top 8 variants by coverage in window 9:20477830-20477831
2012-10-07 16:28:49,576 - DEBUG - Taking top 8 variants by coverage in window 9:20482012-20482013
2012-10-07 16:28:49,599 - DEBUG - Taking top 8 variants by coverage in window 9:20482016-20482017
2012-10-07 16:28:49,624 - DEBUG - Taking top 8 variants by coverage in window 9:20482032-20482033
2012-10-07 16:28:50,096 - DEBUG - Taking top 8 variants by coverage in window 9:20485717-20485719
2012-10-07 16:28:50,162 - DEBUG - Taking top 8 variants by coverage in window 9:20487867-20487868
2012-10-07 16:28:50,183 - DEBUG - Taking top 8 variants by coverage in window 9:20487888-20487898
2012-10-07 16:28:50,857 - DEBUG - Taking top 8 variants by coverage in window 9:20490927-20490929
2012-10-07 16:28:50,932 - DEBUG - Taking top 8 variants by coverage in window 9:20490945-20490949
2012-10-07 16:28:51,064 - DEBUG - Taking top 8 variants by coverage in window 9:20491006-20491011
2012-10-07 16:28:51,518 - DEBUG - Taking top 8 variants by coverage in window 9:20493162-20493168
2012-10-07 16:28:52,413 - DEBUG - Taking top 8 variants by coverage in window 9:20508139-20508140
2012-10-07 16:28:52,600 - DEBUG - Taking top 8 variants by coverage in window 9:20510305-20510306
2012-10-07 16:28:52,620 - DEBUG - Taking top 8 variants by coverage in window 9:20510316-20510317
2012-10-07 16:28:53,233 - DEBUG - Taking top 8 variants by coverage in window 9:20515218-20515219
2012-10-07 16:28:54,101 - DEBUG - Taking top 8 variants by coverage in window 9:20525660-20525667
2012-10-07 16:28:54,179 - DEBUG - Taking top 8 variants by coverage in window 9:20525989-20525999
2012-10-07 16:28:54,475 - DEBUG - Taking top 8 variants by coverage in window 9:20527331-20527332
2012-10-07 16:28:55,018 - DEBUG - Taking top 8 variants by coverage in window 9:20533749-20533750
2012-10-07 16:28:55,628 - DEBUG - Taking top 8 variants by coverage in window 9:20540800-20540801
2012-10-07 16:28:55,891 - DEBUG - Taking top 8 variants by coverage in window 9:20541672-20541673
2012-10-07 16:28:56,023 - DEBUG - Taking top 8 variants by coverage in window 9:20542457-20542458
2012-10-07 16:28:56,895 - DEBUG - Taking top 8 variants by coverage in window 9:20552897-20552898
2012-10-07 16:28:57,152 - DEBUG - Taking top 8 variants by coverage in window 9:20555505-20555510
2012-10-07 16:28:57,443 - DEBUG - Taking top 8 variants by coverage in window 9:20559752-20559753
2012-10-07 16:28:57,658 - DEBUG - Taking top 8 variants by coverage in window 9:20560967-20560968
2012-10-07 16:28:57,773 - DEBUG - Taking top 8 variants by coverage in window 9:20561028-20561031
2012-10-07 16:28:58,034 - DEBUG - Taking top 8 variants by coverage in window 9:20562557-20562558
2012-10-07 16:28:58,060 - DEBUG - Taking top 8 variants by coverage in window 9:20562657-20562660
2012-10-07 16:28:58,135 - DEBUG - Taking top 8 variants by coverage in window 9:20562827-20562828
2012-10-07 16:28:58,178 - DEBUG - Taking top 8 variants by coverage in window 9:20562893-20562894
2012-10-07 16:28:58,405 - DEBUG - Taking top 8 variants by coverage in window 9:20565076-20565079
2012-10-07 16:28:59,679 - DEBUG - Taking top 8 variants by coverage in window 9:20580141-20580142
2012-10-07 16:29:00,959 - DEBUG - Taking top 8 variants by coverage in window 9:20591529-20591530
2012-10-07 16:29:01,782 - DEBUG - Taking top 8 variants by coverage in window 9:20598091-20598092
2012-10-07 16:29:01,919 - DEBUG - Taking top 8 variants by coverage in window 9:20599839-20599840
2012-10-07 16:29:01,988 - DEBUG - Taking top 8 variants by coverage in window 9:20600843-20600844
2012-10-07 16:29:02,147 - DEBUG - Taking top 8 variants by coverage in window 9:20601370-20601371
2012-10-07 16:29:02,665 - DEBUG - Taking top 8 variants by coverage in window 9:20608127-20608128
2012-10-07 16:29:02,975 - DEBUG - Taking top 8 variants by coverage in window 9:20611117-20611118
2012-10-07 16:29:02,992 - DEBUG - Taking top 8 variants by coverage in window 9:20611119-20611120
2012-10-07 16:29:03,100 - DEBUG - Taking top 8 variants by coverage in window 9:20612287-20612289
2012-10-07 16:29:03,131 - DEBUG - Taking top 8 variants by coverage in window 9:20612325-20612326
2012-10-07 16:29:04,081 - DEBUG - Taking top 8 variants by coverage in window 9:20622302-20622303
2012-10-07 16:29:04,667 - DEBUG - Taking top 8 variants by coverage in window 9:20626210-20626219
2012-10-07 16:29:05,074 - DEBUG - Taking top 8 variants by coverage in window 9:20632550-20632560
2012-10-07 16:29:05,190 - DEBUG - Taking top 8 variants by coverage in window 9:20632671-20632672
2012-10-07 16:29:05,382 - DEBUG - Taking top 8 variants by coverage in window 9:20633486-20633487
2012-10-07 16:29:05,955 - DEBUG - Taking top 8 variants by coverage in window 9:20637946-20637951
2012-10-07 16:29:06,307 - DEBUG - Taking top 8 variants by coverage in window 9:20638406-20638409
2012-10-07 16:29:06,811 - DEBUG - Taking top 8 variants by coverage in window 9:20641956-20641957
2012-10-07 16:29:06,850 - DEBUG - Taking top 8 variants by coverage in window 9:20641963-20641964
2012-10-07 16:29:08,440 - DEBUG - Taking top 8 variants by coverage in window 9:20652383-20652384
2012-10-07 16:29:08,465 - DEBUG - Taking top 8 variants by coverage in window 9:20652411-20652412
2012-10-07 16:29:09,024 - DEBUG - Taking top 8 variants by coverage in window 9:20656717-20656724
2012-10-07 16:29:09,787 - DEBUG - Taking top 8 variants by coverage in window 9:20661543-20661544
2012-10-07 16:29:09,828 - DEBUG - Taking top 8 variants by coverage in window 9:20661585-20661586
2012-10-07 16:29:10,623 - DEBUG - Taking top 8 variants by coverage in window 9:20667936-20667937
2012-10-07 16:29:10,638 - DEBUG - Taking top 8 variants by coverage in window 9:20667941-20667942
2012-10-07 16:29:10,780 - DEBUG - Taking top 8 variants by coverage in window 9:20668231-20668232
2012-10-07 16:29:10,808 - DEBUG - Taking top 8 variants by coverage in window 9:20668233-20668234
2012-10-07 16:29:10,996 - DEBUG - Taking top 8 variants by coverage in window 9:20669754-20669755
2012-10-07 16:29:11,015 - DEBUG - Taking top 8 variants by coverage in window 9:20669764-20669765
2012-10-07 16:29:11,396 - DEBUG - Taking top 8 variants by coverage in window 9:20672917-20672918
2012-10-07 16:29:11,471 - DEBUG - Taking top 8 variants by coverage in window 9:20673526-20673527
2012-10-07 16:29:11,936 - DEBUG - Taking top 8 variants by coverage in window 9:20685319-20685320
2012-10-07 16:29:12,397 - DEBUG - Taking top 8 variants by coverage in window 9:20693558-20693561
2012-10-07 16:29:12,425 - DEBUG - Taking top 8 variants by coverage in window 9:20693751-20693752
2012-10-07 16:29:13,471 - DEBUG - Taking top 8 variants by coverage in window 9:20705396-20705397
2012-10-07 16:29:14,686 - DEBUG - Taking top 8 variants by coverage in window 9:20719815-20719816
2012-10-07 16:29:14,852 - DEBUG - Taking top 8 variants by coverage in window 9:20721513-20721514
2012-10-07 16:29:14,872 - DEBUG - Taking top 8 variants by coverage in window 9:20721516-20721517
2012-10-07 16:29:15,338 - DEBUG - Taking top 8 variants by coverage in window 9:20725374-20725375
2012-10-07 16:29:15,591 - DEBUG - Taking top 8 variants by coverage in window 9:20727868-20727869
2012-10-07 16:29:16,179 - DEBUG - Taking top 8 variants by coverage in window 9:20733841-20733842
2012-10-07 16:29:17,360 - DEBUG - Taking top 8 variants by coverage in window 9:20746881-20746882
2012-10-07 16:29:17,456 - DEBUG - Taking top 8 variants by coverage in window 9:20746909-20746911
2012-10-07 16:29:18,293 - DEBUG - Taking top 8 variants by coverage in window 9:20754068-20754069
2012-10-07 16:29:18,304 - DEBUG - Taking top 8 variants by coverage in window 9:20754085-20754086
2012-10-07 16:29:18,317 - DEBUG - Taking top 8 variants by coverage in window 9:20754099-20754100
2012-10-07 16:29:18,718 - DEBUG - Taking top 8 variants by coverage in window 9:20760722-20760723
2012-10-07 16:29:18,994 - DEBUG - Taking top 8 variants by coverage in window 9:20767729-20767730
2012-10-07 16:29:19,010 - DEBUG - Taking top 8 variants by coverage in window 9:20767731-20767732
2012-10-07 16:29:19,070 - DEBUG - Taking top 8 variants by coverage in window 9:20768308-20768309
2012-10-07 16:29:19,154 - DEBUG - Taking top 8 variants by coverage in window 9:20769872-20769873
2012-10-07 16:29:19,600 - DEBUG - Taking top 8 variants by coverage in window 9:20778161-20778175
2012-10-07 16:29:19,763 - DEBUG - Taking top 8 variants by coverage in window 9:20782289-20782290
2012-10-07 16:29:20,061 - DEBUG - Taking top 8 variants by coverage in window 9:20786919-20786920
2012-10-07 16:29:20,224 - DEBUG - Taking top 8 variants by coverage in window 9:20790656-20790657
2012-10-07 16:29:20,336 - DEBUG - Taking top 8 variants by coverage in window 9:20791718-20791722
2012-10-07 16:29:20,423 - DEBUG - Taking top 8 variants by coverage in window 9:20791835-20791836
2012-10-07 16:29:20,518 - DEBUG - Taking top 8 variants by coverage in window 9:20792237-20792238
2012-10-07 16:29:21,179 - DEBUG - Taking top 8 variants by coverage in window 9:20796378-20796386
2012-10-07 16:29:21,307 - DEBUG - Taking top 8 variants by coverage in window 9:20798493-20798494
2012-10-07 16:29:21,328 - DEBUG - Taking top 8 variants by coverage in window 9:20798587-20798588
2012-10-07 16:29:22,645 - DEBUG - Taking top 8 variants by coverage in window 9:20815257-20815261
2012-10-07 16:29:22,688 - DEBUG - Taking top 8 variants by coverage in window 9:20815277-20815278
2012-10-07 16:29:22,746 - DEBUG - Taking top 8 variants by coverage in window 9:20815598-20815600
2012-10-07 16:29:22,757 - DEBUG - Taking top 8 variants by coverage in window 9:20815622-20815623
2012-10-07 16:29:22,775 - DEBUG - Taking top 8 variants by coverage in window 9:20815790-20815802
2012-10-07 16:29:22,829 - DEBUG - Taking top 8 variants by coverage in window 9:20816053-20816054
2012-10-07 16:29:22,855 - DEBUG - Taking top 8 variants by coverage in window 9:20816058-20816059
2012-10-07 16:29:23,137 - DEBUG - Taking top 8 variants by coverage in window 9:20821510-20821511
2012-10-07 16:29:23,388 - DEBUG - Taking top 8 variants by coverage in window 9:20825064-20825065
2012-10-07 16:29:23,398 - DEBUG - Taking top 8 variants by coverage in window 9:20825075-20825076
2012-10-07 16:29:23,711 - DEBUG - Taking top 8 variants by coverage in window 9:20830640-20830641
2012-10-07 16:29:23,740 - DEBUG - Taking top 8 variants by coverage in window 9:20830700-20830701
2012-10-07 16:29:23,937 - DEBUG - Taking top 8 variants by coverage in window 9:20833559-20833560
2012-10-07 16:29:23,946 - DEBUG - Taking top 8 variants by coverage in window 9:20833561-20833562
2012-10-07 16:29:24,371 - DEBUG - Taking top 8 variants by coverage in window 9:20838670-20838671
2012-10-07 16:29:24,487 - DEBUG - Taking top 8 variants by coverage in window 9:20840369-20840371
2012-10-07 16:29:24,495 - DEBUG - Taking top 8 variants by coverage in window 9:20840372-20840375
2012-10-07 16:29:24,666 - DEBUG - Taking top 8 variants by coverage in window 9:20842797-20842798
2012-10-07 16:29:24,785 - DEBUG - Taking top 8 variants by coverage in window 9:20845466-20845467
2012-10-07 16:29:25,112 - DEBUG - Taking top 8 variants by coverage in window 9:20849498-20849507
2012-10-07 16:29:25,571 - DEBUG - Taking top 8 variants by coverage in window 9:20855465-20855466
2012-10-07 16:29:25,690 - DEBUG - Taking top 8 variants by coverage in window 9:20856218-20856221
2012-10-07 16:29:25,708 - DEBUG - Taking top 8 variants by coverage in window 9:20856238-20856239
2012-10-07 16:29:25,845 - DEBUG - Taking top 8 variants by coverage in window 9:20857860-20857861
2012-10-07 16:29:25,868 - DEBUG - Taking top 8 variants by coverage in window 9:20857864-20857865
2012-10-07 16:29:26,645 - DEBUG - Taking top 8 variants by coverage in window 9:20866738-20866742
2012-10-07 16:29:26,935 - DEBUG - Taking top 8 variants by coverage in window 9:20873002-20873003
2012-10-07 16:29:27,217 - DEBUG - Taking top 8 variants by coverage in window 9:20875993-20876010
2012-10-07 16:29:27,271 - DEBUG - Taking top 8 variants by coverage in window 9:20876014-20876015
2012-10-07 16:29:27,847 - DEBUG - Taking top 8 variants by coverage in window 9:20886762-20886763
2012-10-07 16:29:28,017 - DEBUG - Taking top 8 variants by coverage in window 9:20892246-20892247
2012-10-07 16:29:28,292 - DEBUG - Taking top 8 variants by coverage in window 9:20897431-20897432
2012-10-07 16:29:28,405 - DEBUG - Taking top 8 variants by coverage in window 9:20898507-20898508
2012-10-07 16:29:28,505 - DEBUG - Taking top 8 variants by coverage in window 9:20900025-20900026
2012-10-07 16:29:28,692 - DEBUG - Taking top 8 variants by coverage in window 9:20903292-20903294
2012-10-07 16:29:28,845 - DEBUG - Taking top 8 variants by coverage in window 9:20905438-20905439
2012-10-07 16:29:28,868 - DEBUG - Taking top 8 variants by coverage in window 9:20905452-20905453
2012-10-07 16:29:28,967 - DEBUG - Taking top 8 variants by coverage in window 9:20905944-20905945
2012-10-07 16:29:29,014 - DEBUG - Taking top 8 variants by coverage in window 9:20905963-20905964
2012-10-07 16:29:29,084 - DEBUG - Taking top 8 variants by coverage in window 9:20906601-20906602
2012-10-07 16:29:29,644 - DEBUG - Taking top 8 variants by coverage in window 9:20911373-20911374
2012-10-07 16:29:30,380 - DEBUG - Taking top 8 variants by coverage in window 9:20921267-20921268
2012-10-07 16:29:30,520 - DEBUG - Taking top 8 variants by coverage in window 9:20922130-20922131
2012-10-07 16:29:31,414 - DEBUG - Taking top 8 variants by coverage in window 9:20933437-20933438
2012-10-07 16:29:31,517 - DEBUG - Taking top 8 variants by coverage in window 9:20935075-20935082
2012-10-07 16:29:31,832 - DEBUG - Taking top 8 variants by coverage in window 9:20938742-20938743
2012-10-07 16:29:31,920 - DEBUG - Taking top 8 variants by coverage in window 9:20938900-20938901
2012-10-07 16:29:32,101 - DEBUG - Taking top 8 variants by coverage in window 9:20941704-20941708
2012-10-07 16:29:32,674 - DEBUG - Taking top 8 variants by coverage in window 9:20951468-20951469
2012-10-07 16:29:33,143 - DEBUG - Taking top 8 variants by coverage in window 9:20961108-20961109
2012-10-07 16:29:33,320 - DEBUG - Taking top 8 variants by coverage in window 9:20963228-20963229
2012-10-07 16:29:33,771 - DEBUG - Taking top 8 variants by coverage in window 9:20967157-20967158
2012-10-07 16:29:33,907 - DEBUG - Taking top 8 variants by coverage in window 9:20969238-20969257
2012-10-07 16:29:35,394 - DEBUG - Taking top 8 variants by coverage in window 9:20987247-20987248
2012-10-07 16:29:35,811 - DEBUG - Taking top 8 variants by coverage in window 9:20993188-20993193
2012-10-07 16:29:37,098 - DEBUG - Read 107531 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 16:29:37,387 - DEBUG - Read 120088 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 16:29:37,681 - DEBUG - Read 132484 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 16:29:38,077 - DEBUG - Read 140728 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 16:29:38,397 - DEBUG - Read 125649 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 16:29:38,679 - DEBUG - Read 120835 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 16:29:38,976 - DEBUG - Read 128347 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 16:29:39,273 - DEBUG - Read 121026 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 16:29:39,543 - DEBUG - Read 112630 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 16:29:39,815 - DEBUG - Read 107942 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 16:29:40,154 - DEBUG - Read 125933 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 16:29:40,424 - DEBUG - Read 114344 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 16:29:40,706 - DEBUG - Read 114910 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 16:29:40,986 - DEBUG - Read 128872 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 16:29:41,295 - DEBUG - Read 136612 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 16:29:41,554 - DEBUG - Read 104480 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 16:29:41,845 - DEBUG - Read 131541 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 16:29:42,138 - DEBUG - Read 121561 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 16:29:42,408 - DEBUG - Read 117089 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 16:29:42,677 - DEBUG - Read 105278 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 16:29:42,784 - DEBUG - Detected 24433 variants in 107531 reads
2012-10-07 16:29:42,968 - DEBUG - Detected 35555 variants in 120088 reads
2012-10-07 16:29:43,211 - DEBUG - Detected 45033 variants in 132484 reads
2012-10-07 16:29:43,525 - DEBUG - Detected 53281 variants in 140728 reads
2012-10-07 16:29:43,833 - DEBUG - Detected 59943 variants in 125649 reads
2012-10-07 16:29:44,179 - DEBUG - Detected 66543 variants in 120835 reads
2012-10-07 16:29:44,574 - DEBUG - Detected 80914 variants in 128347 reads
2012-10-07 16:29:45,026 - DEBUG - Detected 88004 variants in 121026 reads
2012-10-07 16:29:45,500 - DEBUG - Detected 94375 variants in 112630 reads
2012-10-07 16:29:46,043 - DEBUG - Detected 99759 variants in 107942 reads
2012-10-07 16:29:46,586 - DEBUG - Detected 105153 variants in 125933 reads
2012-10-07 16:29:47,145 - DEBUG - Detected 109524 variants in 114344 reads
2012-10-07 16:29:47,725 - DEBUG - Detected 114287 variants in 114910 reads
2012-10-07 16:29:48,340 - DEBUG - Detected 119148 variants in 128872 reads
2012-10-07 16:29:49,028 - DEBUG - Detected 128287 variants in 136612 reads
2012-10-07 16:29:49,689 - DEBUG - Detected 133515 variants in 104480 reads
2012-10-07 16:29:50,399 - DEBUG - Detected 137591 variants in 131541 reads
2012-10-07 16:29:51,114 - DEBUG - Detected 141996 variants in 121561 reads
2012-10-07 16:29:51,914 - DEBUG - Detected 147249 variants in 117089 reads
2012-10-07 16:29:52,669 - DEBUG - Detected 152317 variants in 105278 reads
2012-10-07 16:29:54,146 - DEBUG - Taking top 8 variants by coverage in window 9:21006348-21006349
2012-10-07 16:29:54,202 - DEBUG - Taking top 8 variants by coverage in window 9:21006499-21006500
2012-10-07 16:29:54,266 - DEBUG - Taking top 8 variants by coverage in window 9:21006943-21006944
2012-10-07 16:29:54,381 - DEBUG - Taking top 8 variants by coverage in window 9:21008239-21008240
2012-10-07 16:29:54,591 - DEBUG - Taking top 8 variants by coverage in window 9:21010837-21010838
2012-10-07 16:29:54,615 - DEBUG - Taking top 8 variants by coverage in window 9:21010839-21010840
2012-10-07 16:29:54,790 - DEBUG - Taking top 8 variants by coverage in window 9:21013292-21013300
2012-10-07 16:29:55,200 - DEBUG - Taking top 8 variants by coverage in window 9:21014027-21014028
2012-10-07 16:29:55,481 - DEBUG - Taking top 8 variants by coverage in window 9:21018225-21018226
2012-10-07 16:29:55,581 - DEBUG - Taking top 8 variants by coverage in window 9:21019429-21019431
2012-10-07 16:29:55,910 - DEBUG - Taking top 8 variants by coverage in window 9:21021415-21021422
2012-10-07 16:29:56,018 - DEBUG - Taking top 8 variants by coverage in window 9:21021513-21021521
2012-10-07 16:29:57,012 - DEBUG - Taking top 8 variants by coverage in window 9:21026579-21026580
2012-10-07 16:29:57,120 - DEBUG - Taking top 8 variants by coverage in window 9:21027870-21027879
2012-10-07 16:29:57,592 - DEBUG - Taking top 8 variants by coverage in window 9:21034837-21034841
2012-10-07 16:29:57,903 - DEBUG - Taking top 8 variants by coverage in window 9:21040199-21040200
2012-10-07 16:29:57,919 - DEBUG - Taking top 8 variants by coverage in window 9:21040219-21040220
2012-10-07 16:29:58,249 - DEBUG - Taking top 8 variants by coverage in window 9:21046046-21046047
2012-10-07 16:29:58,653 - DEBUG - Taking top 8 variants by coverage in window 9:21052026-21052027
2012-10-07 16:29:58,755 - DEBUG - Taking top 8 variants by coverage in window 9:21054612-21054613
2012-10-07 16:29:58,786 - DEBUG - Taking top 8 variants by coverage in window 9:21055275-21055276
2012-10-07 16:29:59,072 - DEBUG - Taking top 8 variants by coverage in window 9:21058982-21058983
2012-10-07 16:29:59,142 - DEBUG - Taking top 8 variants by coverage in window 9:21059181-21059182
2012-10-07 16:29:59,301 - DEBUG - Taking top 8 variants by coverage in window 9:21059488-21059505
2012-10-07 16:29:59,648 - DEBUG - Taking top 8 variants by coverage in window 9:21064042-21064043
2012-10-07 16:29:59,682 - DEBUG - Taking top 8 variants by coverage in window 9:21064072-21064073
2012-10-07 16:29:59,746 - DEBUG - Taking top 8 variants by coverage in window 9:21064918-21064919
2012-10-07 16:30:01,269 - DEBUG - Taking top 8 variants by coverage in window 9:21098978-21098980
2012-10-07 16:30:02,424 - DEBUG - Taking top 8 variants by coverage in window 9:21112779-21112782
2012-10-07 16:30:02,619 - DEBUG - Taking top 8 variants by coverage in window 9:21115582-21115583
2012-10-07 16:30:02,657 - DEBUG - Taking top 8 variants by coverage in window 9:21116017-21116018
2012-10-07 16:30:03,130 - DEBUG - Taking top 8 variants by coverage in window 9:21121092-21121093
2012-10-07 16:30:03,151 - DEBUG - Taking top 8 variants by coverage in window 9:21121105-21121106
2012-10-07 16:30:03,184 - DEBUG - Taking top 8 variants by coverage in window 9:21121296-21121297
2012-10-07 16:30:03,275 - DEBUG - Taking top 8 variants by coverage in window 9:21122013-21122015
2012-10-07 16:30:03,829 - DEBUG - Taking top 8 variants by coverage in window 9:21129279-21129280
2012-10-07 16:30:03,903 - DEBUG - Taking top 8 variants by coverage in window 9:21129325-21129326
2012-10-07 16:30:03,923 - DEBUG - Taking top 8 variants by coverage in window 9:21129328-21129331
2012-10-07 16:30:04,424 - DEBUG - Taking top 8 variants by coverage in window 9:21135957-21135958
2012-10-07 16:30:04,901 - DEBUG - Taking top 8 variants by coverage in window 9:21143194-21143195
2012-10-07 16:30:05,530 - DEBUG - Taking top 8 variants by coverage in window 9:21154661-21154662
2012-10-07 16:30:05,838 - DEBUG - Taking top 8 variants by coverage in window 9:21160575-21160581
2012-10-07 16:30:05,941 - DEBUG - Taking top 8 variants by coverage in window 9:21160611-21160612
2012-10-07 16:30:06,060 - DEBUG - Taking top 8 variants by coverage in window 9:21161774-21161775
2012-10-07 16:30:06,770 - DEBUG - Taking top 8 variants by coverage in window 9:21170831-21170832
2012-10-07 16:30:07,406 - DEBUG - Taking top 8 variants by coverage in window 9:21187328-21187329
2012-10-07 16:30:07,608 - DEBUG - Taking top 8 variants by coverage in window 9:21193241-21193242
2012-10-07 16:30:09,323 - DEBUG - Taking top 8 variants by coverage in window 9:21235634-21235635
2012-10-07 16:30:09,444 - DEBUG - Taking top 8 variants by coverage in window 9:21239453-21239454
2012-10-07 16:30:09,467 - DEBUG - Taking top 8 variants by coverage in window 9:21239643-21239644
2012-10-07 16:30:10,145 - DEBUG - Taking top 8 variants by coverage in window 9:21253570-21253571
2012-10-07 16:30:10,829 - DEBUG - Taking top 8 variants by coverage in window 9:21262566-21262567
2012-10-07 16:30:10,849 - DEBUG - Taking top 8 variants by coverage in window 9:21262580-21262582
2012-10-07 16:30:11,526 - DEBUG - Taking top 8 variants by coverage in window 9:21271064-21271066
2012-10-07 16:30:11,907 - DEBUG - Taking top 8 variants by coverage in window 9:21276806-21276807
2012-10-07 16:30:12,143 - DEBUG - Taking top 8 variants by coverage in window 9:21277240-21277241
2012-10-07 16:30:12,460 - DEBUG - Taking top 8 variants by coverage in window 9:21279755-21279759
2012-10-07 16:30:12,497 - DEBUG - Taking top 8 variants by coverage in window 9:21279798-21279799
2012-10-07 16:30:12,984 - DEBUG - Taking top 8 variants by coverage in window 9:21290018-21290019
2012-10-07 16:30:13,012 - DEBUG - Taking top 8 variants by coverage in window 9:21290652-21290656
2012-10-07 16:30:13,238 - DEBUG - Taking top 8 variants by coverage in window 9:21292930-21292933
2012-10-07 16:30:13,502 - DEBUG - Taking top 8 variants by coverage in window 9:21295980-21295981
2012-10-07 16:30:13,801 - DEBUG - Taking top 8 variants by coverage in window 9:21301623-21301624
2012-10-07 16:30:13,842 - DEBUG - Taking top 8 variants by coverage in window 9:21301659-21301665
2012-10-07 16:30:14,178 - DEBUG - Taking top 8 variants by coverage in window 9:21306922-21306923
2012-10-07 16:30:14,915 - DEBUG - Taking top 8 variants by coverage in window 9:21321380-21321381
2012-10-07 16:30:15,061 - DEBUG - Taking top 8 variants by coverage in window 9:21326515-21326516
2012-10-07 16:30:15,099 - DEBUG - Taking top 8 variants by coverage in window 9:21326893-21326894
2012-10-07 16:30:15,166 - DEBUG - Taking top 8 variants by coverage in window 9:21327337-21327338
2012-10-07 16:30:15,218 - DEBUG - Taking top 8 variants by coverage in window 9:21329239-21329249
2012-10-07 16:30:15,350 - DEBUG - Taking top 8 variants by coverage in window 9:21329984-21329986
2012-10-07 16:30:15,490 - DEBUG - Taking top 8 variants by coverage in window 9:21331949-21331950
2012-10-07 16:30:15,600 - DEBUG - Taking top 8 variants by coverage in window 9:21334563-21334572
2012-10-07 16:30:15,644 - DEBUG - Taking top 8 variants by coverage in window 9:21334590-21334591
2012-10-07 16:30:15,689 - DEBUG - Taking top 8 variants by coverage in window 9:21334679-21334682
2012-10-07 16:30:15,787 - DEBUG - Taking top 8 variants by coverage in window 9:21334689-21334693
2012-10-07 16:30:16,272 - DEBUG - Taking top 8 variants by coverage in window 9:21341241-21341242
2012-10-07 16:30:16,635 - DEBUG - Taking top 8 variants by coverage in window 9:21346629-21346632
2012-10-07 16:30:16,928 - DEBUG - Taking top 8 variants by coverage in window 9:21348951-21348952
2012-10-07 16:30:17,134 - DEBUG - Taking top 8 variants by coverage in window 9:21354038-21354043
2012-10-07 16:30:17,254 - DEBUG - Taking top 8 variants by coverage in window 9:21354246-21354247
2012-10-07 16:30:17,330 - DEBUG - Taking top 8 variants by coverage in window 9:21355925-21355926
2012-10-07 16:30:17,914 - DEBUG - Taking top 8 variants by coverage in window 9:21368759-21368760
2012-10-07 16:30:18,321 - DEBUG - Taking top 8 variants by coverage in window 9:21381157-21381158
2012-10-07 16:30:18,716 - DEBUG - Taking top 8 variants by coverage in window 9:21387462-21387463
2012-10-07 16:30:18,733 - DEBUG - Taking top 8 variants by coverage in window 9:21387463-21387464
2012-10-07 16:30:18,888 - DEBUG - Taking top 8 variants by coverage in window 9:21388563-21388564
2012-10-07 16:30:19,342 - DEBUG - Taking top 8 variants by coverage in window 9:21400475-21400476
2012-10-07 16:30:19,456 - DEBUG - Taking top 8 variants by coverage in window 9:21401874-21401875
2012-10-07 16:30:19,929 - DEBUG - Taking top 8 variants by coverage in window 9:21413286-21413287
2012-10-07 16:30:19,952 - DEBUG - Taking top 8 variants by coverage in window 9:21413305-21413306
2012-10-07 16:30:20,662 - DEBUG - Taking top 8 variants by coverage in window 9:21426506-21426507
2012-10-07 16:30:21,055 - DEBUG - Taking top 8 variants by coverage in window 9:21433323-21433324
2012-10-07 16:30:21,066 - DEBUG - Taking top 8 variants by coverage in window 9:21433602-21433609
2012-10-07 16:30:21,209 - DEBUG - Taking top 8 variants by coverage in window 9:21434111-21434113
2012-10-07 16:30:21,905 - DEBUG - Taking top 8 variants by coverage in window 9:21448577-21448579
2012-10-07 16:30:21,942 - DEBUG - Taking top 8 variants by coverage in window 9:21448774-21448775
2012-10-07 16:30:22,016 - DEBUG - Taking top 8 variants by coverage in window 9:21450920-21450931
2012-10-07 16:30:22,220 - DEBUG - Taking top 8 variants by coverage in window 9:21453842-21453843
2012-10-07 16:30:22,635 - DEBUG - Taking top 8 variants by coverage in window 9:21462597-21462602
2012-10-07 16:30:23,208 - DEBUG - Taking top 8 variants by coverage in window 9:21472178-21472179
2012-10-07 16:30:23,725 - DEBUG - Taking top 8 variants by coverage in window 9:21488369-21488370
2012-10-07 16:30:23,748 - DEBUG - Taking top 8 variants by coverage in window 9:21488372-21488373
2012-10-07 16:30:24,828 - DEBUG - Taking top 8 variants by coverage in window 9:21507988-21507989
2012-10-07 16:30:24,888 - DEBUG - Taking top 8 variants by coverage in window 9:21508423-21508439
2012-10-07 16:30:24,951 - DEBUG - Taking top 8 variants by coverage in window 9:21509605-21509609
2012-10-07 16:30:25,313 - DEBUG - Taking top 8 variants by coverage in window 9:21512038-21512041
2012-10-07 16:30:25,387 - DEBUG - Taking top 8 variants by coverage in window 9:21512150-21512151
2012-10-07 16:30:25,584 - DEBUG - Taking top 8 variants by coverage in window 9:21513546-21513550
2012-10-07 16:30:25,872 - DEBUG - Taking top 8 variants by coverage in window 9:21517827-21517828
2012-10-07 16:30:25,911 - DEBUG - Taking top 8 variants by coverage in window 9:21517914-21517915
2012-10-07 16:30:26,030 - DEBUG - Taking top 8 variants by coverage in window 9:21518801-21518802
2012-10-07 16:30:26,082 - DEBUG - Taking top 8 variants by coverage in window 9:21518966-21518967
2012-10-07 16:30:26,219 - DEBUG - Taking top 8 variants by coverage in window 9:21519029-21519030
2012-10-07 16:30:26,302 - DEBUG - Taking top 8 variants by coverage in window 9:21519048-21519049
2012-10-07 16:30:26,608 - DEBUG - Taking top 8 variants by coverage in window 9:21521795-21521796
2012-10-07 16:30:26,628 - DEBUG - Taking top 8 variants by coverage in window 9:21521815-21521816
2012-10-07 16:30:26,742 - DEBUG - Taking top 8 variants by coverage in window 9:21523299-21523303
2012-10-07 16:30:28,021 - DEBUG - Taking top 8 variants by coverage in window 9:21524910-21524911
2012-10-07 16:30:28,580 - DEBUG - Taking top 8 variants by coverage in window 9:21529898-21529918
2012-10-07 16:30:29,351 - DEBUG - Taking top 8 variants by coverage in window 9:21538942-21538943
2012-10-07 16:30:29,392 - DEBUG - Taking top 8 variants by coverage in window 9:21538972-21538973
2012-10-07 16:30:29,415 - DEBUG - Taking top 8 variants by coverage in window 9:21538975-21538976
2012-10-07 16:30:29,724 - DEBUG - Taking top 8 variants by coverage in window 9:21541796-21541797
2012-10-07 16:30:29,824 - DEBUG - Taking top 8 variants by coverage in window 9:21541875-21541876
2012-10-07 16:30:30,527 - DEBUG - Taking top 8 variants by coverage in window 9:21548148-21548149
2012-10-07 16:30:30,731 - DEBUG - Taking top 8 variants by coverage in window 9:21551433-21551434
2012-10-07 16:30:31,055 - DEBUG - Taking top 8 variants by coverage in window 9:21555292-21555293
2012-10-07 16:30:31,655 - DEBUG - Taking top 8 variants by coverage in window 9:21560452-21560458
2012-10-07 16:30:31,970 - DEBUG - Taking top 8 variants by coverage in window 9:21563139-21563149
2012-10-07 16:30:32,015 - DEBUG - Taking top 8 variants by coverage in window 9:21563589-21563590
2012-10-07 16:30:32,113 - DEBUG - Taking top 8 variants by coverage in window 9:21563631-21563632
2012-10-07 16:30:32,134 - DEBUG - Taking top 8 variants by coverage in window 9:21563633-21563634
2012-10-07 16:30:32,161 - DEBUG - Taking top 8 variants by coverage in window 9:21563645-21563647
2012-10-07 16:30:32,368 - DEBUG - Taking top 8 variants by coverage in window 9:21566086-21566087
2012-10-07 16:30:32,862 - DEBUG - Taking top 8 variants by coverage in window 9:21570094-21570095
2012-10-07 16:30:33,082 - DEBUG - Taking top 8 variants by coverage in window 9:21572732-21572733
2012-10-07 16:30:33,365 - DEBUG - Taking top 8 variants by coverage in window 9:21574996-21574997
2012-10-07 16:30:33,958 - DEBUG - Taking top 8 variants by coverage in window 9:21579023-21579024
2012-10-07 16:30:34,146 - DEBUG - Taking top 8 variants by coverage in window 9:21579196-21579197
2012-10-07 16:30:34,770 - DEBUG - Taking top 8 variants by coverage in window 9:21583728-21583729
2012-10-07 16:30:35,085 - DEBUG - Taking top 8 variants by coverage in window 9:21585943-21585949
2012-10-07 16:30:35,336 - DEBUG - Taking top 8 variants by coverage in window 9:21586903-21586917
2012-10-07 16:30:35,348 - DEBUG - Taking top 8 variants by coverage in window 9:21586920-21586921
2012-10-07 16:30:35,355 - DEBUG - Taking top 8 variants by coverage in window 9:21586921-21586922
2012-10-07 16:30:35,764 - DEBUG - Taking top 8 variants by coverage in window 9:21590629-21590630
2012-10-07 16:30:36,750 - DEBUG - Taking top 8 variants by coverage in window 9:21598569-21598572
2012-10-07 16:30:36,875 - DEBUG - Taking top 8 variants by coverage in window 9:21598595-21598596
2012-10-07 16:30:36,904 - DEBUG - Taking top 8 variants by coverage in window 9:21598599-21598600
2012-10-07 16:30:37,008 - DEBUG - Taking top 8 variants by coverage in window 9:21598616-21598618
2012-10-07 16:30:37,322 - DEBUG - Taking top 8 variants by coverage in window 9:21604407-21604408
2012-10-07 16:30:37,386 - DEBUG - Taking top 8 variants by coverage in window 9:21605004-21605005
2012-10-07 16:30:37,424 - DEBUG - Taking top 8 variants by coverage in window 9:21605035-21605036
2012-10-07 16:30:37,604 - DEBUG - Taking top 8 variants by coverage in window 9:21606332-21606333
2012-10-07 16:30:37,891 - DEBUG - Taking top 8 variants by coverage in window 9:21606399-21606400
2012-10-07 16:30:38,708 - DEBUG - Taking top 8 variants by coverage in window 9:21612694-21612695
2012-10-07 16:30:39,335 - DEBUG - Taking top 8 variants by coverage in window 9:21619794-21619795
2012-10-07 16:30:39,664 - DEBUG - Taking top 8 variants by coverage in window 9:21623213-21623215
2012-10-07 16:30:39,796 - DEBUG - Taking top 8 variants by coverage in window 9:21624027-21624028
2012-10-07 16:30:40,289 - DEBUG - Taking top 8 variants by coverage in window 9:21628606-21628607
2012-10-07 16:30:40,419 - DEBUG - Taking top 8 variants by coverage in window 9:21630512-21630516
2012-10-07 16:30:40,740 - DEBUG - Taking top 8 variants by coverage in window 9:21632385-21632386
2012-10-07 16:30:40,813 - DEBUG - Taking top 8 variants by coverage in window 9:21632752-21632754
2012-10-07 16:30:40,972 - DEBUG - Taking top 8 variants by coverage in window 9:21632832-21632833
2012-10-07 16:30:41,467 - DEBUG - Taking top 8 variants by coverage in window 9:21638788-21638789
2012-10-07 16:30:41,850 - DEBUG - Taking top 8 variants by coverage in window 9:21642259-21642260
2012-10-07 16:30:41,999 - DEBUG - Taking top 8 variants by coverage in window 9:21642383-21642384
2012-10-07 16:30:42,047 - DEBUG - Taking top 8 variants by coverage in window 9:21642471-21642472
2012-10-07 16:30:42,088 - DEBUG - Taking top 8 variants by coverage in window 9:21642826-21642827
2012-10-07 16:30:42,107 - DEBUG - Taking top 8 variants by coverage in window 9:21642851-21642852
2012-10-07 16:30:42,115 - DEBUG - Taking top 8 variants by coverage in window 9:21642856-21642859
2012-10-07 16:30:42,267 - DEBUG - Taking top 8 variants by coverage in window 9:21643085-21643086
2012-10-07 16:30:42,353 - DEBUG - Taking top 8 variants by coverage in window 9:21643399-21643400
2012-10-07 16:30:42,939 - DEBUG - Taking top 8 variants by coverage in window 9:21650655-21650656
2012-10-07 16:30:42,999 - DEBUG - Taking top 8 variants by coverage in window 9:21650665-21650666
2012-10-07 16:30:43,310 - DEBUG - Taking top 8 variants by coverage in window 9:21650743-21650744
2012-10-07 16:30:43,387 - DEBUG - Taking top 8 variants by coverage in window 9:21650862-21650863
2012-10-07 16:30:43,525 - DEBUG - Taking top 8 variants by coverage in window 9:21651488-21651489
2012-10-07 16:30:43,594 - DEBUG - Taking top 8 variants by coverage in window 9:21652354-21652355
2012-10-07 16:30:43,908 - DEBUG - Taking top 8 variants by coverage in window 9:21654240-21654241
2012-10-07 16:30:44,036 - DEBUG - Taking top 8 variants by coverage in window 9:21655628-21655629
2012-10-07 16:30:44,485 - DEBUG - Taking top 8 variants by coverage in window 9:21661878-21661879
2012-10-07 16:30:45,793 - DEBUG - Taking top 8 variants by coverage in window 9:21676420-21676421
2012-10-07 16:30:46,042 - DEBUG - Taking top 8 variants by coverage in window 9:21679362-21679363
2012-10-07 16:30:46,052 - DEBUG - Taking top 8 variants by coverage in window 9:21679375-21679376
2012-10-07 16:30:46,601 - DEBUG - Taking top 8 variants by coverage in window 9:21682731-21682732
2012-10-07 16:30:46,826 - DEBUG - Taking top 8 variants by coverage in window 9:21683164-21683167
2012-10-07 16:30:47,613 - DEBUG - Taking top 8 variants by coverage in window 9:21683626-21683627
2012-10-07 16:30:47,634 - DEBUG - Taking top 8 variants by coverage in window 9:21683632-21683636
2012-10-07 16:30:48,552 - DEBUG - Taking top 8 variants by coverage in window 9:21696344-21696345
2012-10-07 16:30:50,027 - DEBUG - Taking top 8 variants by coverage in window 9:21710643-21710644
2012-10-07 16:30:50,519 - DEBUG - Taking top 8 variants by coverage in window 9:21710854-21710855
2012-10-07 16:30:51,844 - DEBUG - Taking top 8 variants by coverage in window 9:21718884-21718885
2012-10-07 16:30:51,993 - DEBUG - Taking top 8 variants by coverage in window 9:21720008-21720009
2012-10-07 16:30:53,772 - DEBUG - Taking top 8 variants by coverage in window 9:21728896-21728897
2012-10-07 16:30:53,955 - DEBUG - Taking top 8 variants by coverage in window 9:21729009-21729010
2012-10-07 16:30:54,085 - DEBUG - Taking top 8 variants by coverage in window 9:21729043-21729044
2012-10-07 16:30:54,306 - DEBUG - Taking top 8 variants by coverage in window 9:21730353-21730354
2012-10-07 16:30:54,525 - DEBUG - Taking top 8 variants by coverage in window 9:21734478-21734479
2012-10-07 16:30:54,896 - DEBUG - Taking top 8 variants by coverage in window 9:21742543-21742551
2012-10-07 16:30:56,058 - DEBUG - Taking top 8 variants by coverage in window 9:21757451-21757453
2012-10-07 16:30:56,094 - DEBUG - Taking top 8 variants by coverage in window 9:21757477-21757478
2012-10-07 16:30:56,249 - DEBUG - Taking top 8 variants by coverage in window 9:21757853-21757854
2012-10-07 16:30:56,370 - DEBUG - Taking top 8 variants by coverage in window 9:21757992-21757993
2012-10-07 16:30:56,996 - DEBUG - Taking top 8 variants by coverage in window 9:21770433-21770434
2012-10-07 16:30:57,264 - DEBUG - Taking top 8 variants by coverage in window 9:21774584-21774585
2012-10-07 16:30:57,283 - DEBUG - Taking top 8 variants by coverage in window 9:21774609-21774610
2012-10-07 16:30:57,311 - DEBUG - Taking top 8 variants by coverage in window 9:21774695-21774696
2012-10-07 16:30:58,337 - DEBUG - Taking top 8 variants by coverage in window 9:21786617-21786621
2012-10-07 16:30:58,424 - DEBUG - Taking top 8 variants by coverage in window 9:21787681-21787682
2012-10-07 16:30:58,502 - DEBUG - Taking top 8 variants by coverage in window 9:21788266-21788267
2012-10-07 16:30:58,703 - DEBUG - Taking top 8 variants by coverage in window 9:21789911-21789915
2012-10-07 16:30:58,752 - DEBUG - Taking top 8 variants by coverage in window 9:21789965-21789967
2012-10-07 16:30:58,799 - DEBUG - Taking top 8 variants by coverage in window 9:21790050-21790051
2012-10-07 16:30:58,888 - DEBUG - Taking top 8 variants by coverage in window 9:21790782-21790790
2012-10-07 16:30:59,108 - DEBUG - Taking top 8 variants by coverage in window 9:21795192-21795193
2012-10-07 16:30:59,168 - DEBUG - Taking top 8 variants by coverage in window 9:21795223-21795224
2012-10-07 16:30:59,462 - DEBUG - Taking top 8 variants by coverage in window 9:21798646-21798647
2012-10-07 16:30:59,643 - DEBUG - Taking top 8 variants by coverage in window 9:21799982-21799983
2012-10-07 16:31:01,843 - DEBUG - Taking top 8 variants by coverage in window 9:21843329-21843334
2012-10-07 16:31:01,917 - DEBUG - Taking top 8 variants by coverage in window 9:21844147-21844148
2012-10-07 16:31:01,947 - DEBUG - Taking top 8 variants by coverage in window 9:21844162-21844163
2012-10-07 16:31:02,113 - DEBUG - Taking top 8 variants by coverage in window 9:21848147-21848148
2012-10-07 16:31:02,323 - DEBUG - Taking top 8 variants by coverage in window 9:21851411-21851412
2012-10-07 16:31:02,343 - DEBUG - Taking top 8 variants by coverage in window 9:21851444-21851446
2012-10-07 16:31:02,697 - DEBUG - Taking top 8 variants by coverage in window 9:21857039-21857040
2012-10-07 16:31:02,811 - DEBUG - Taking top 8 variants by coverage in window 9:21858465-21858467
2012-10-07 16:31:02,980 - DEBUG - Taking top 8 variants by coverage in window 9:21863428-21863429
2012-10-07 16:31:03,405 - DEBUG - Taking top 8 variants by coverage in window 9:21867839-21867840
2012-10-07 16:31:03,673 - DEBUG - Taking top 8 variants by coverage in window 9:21873285-21873286
2012-10-07 16:31:03,806 - DEBUG - Taking top 8 variants by coverage in window 9:21873718-21873719
2012-10-07 16:31:04,332 - DEBUG - Taking top 8 variants by coverage in window 9:21882995-21882996
2012-10-07 16:31:04,345 - DEBUG - Taking top 8 variants by coverage in window 9:21882997-21882998
2012-10-07 16:31:05,081 - DEBUG - Taking top 8 variants by coverage in window 9:21892220-21892224
2012-10-07 16:31:05,336 - DEBUG - Taking top 8 variants by coverage in window 9:21893899-21893900
2012-10-07 16:31:06,195 - DEBUG - Taking top 8 variants by coverage in window 9:21901812-21901821
2012-10-07 16:31:07,248 - DEBUG - Taking top 8 variants by coverage in window 9:21917252-21917253
2012-10-07 16:31:07,418 - DEBUG - Taking top 8 variants by coverage in window 9:21917542-21917543
2012-10-07 16:31:08,267 - DEBUG - Taking top 8 variants by coverage in window 9:21922599-21922600
2012-10-07 16:31:08,819 - DEBUG - Taking top 8 variants by coverage in window 9:21930548-21930549
2012-10-07 16:31:08,845 - DEBUG - Taking top 8 variants by coverage in window 9:21930554-21930555
2012-10-07 16:31:09,084 - DEBUG - Taking top 8 variants by coverage in window 9:21933316-21933317
2012-10-07 16:31:09,206 - DEBUG - Taking top 8 variants by coverage in window 9:21933869-21933870
2012-10-07 16:31:09,322 - DEBUG - Taking top 8 variants by coverage in window 9:21934808-21934809
2012-10-07 16:31:09,552 - DEBUG - Taking top 8 variants by coverage in window 9:21937603-21937604
2012-10-07 16:31:09,811 - DEBUG - Taking top 8 variants by coverage in window 9:21937695-21937696
2012-10-07 16:31:10,551 - DEBUG - Taking top 8 variants by coverage in window 9:21942606-21942609
2012-10-07 16:31:10,934 - DEBUG - Taking top 8 variants by coverage in window 9:21946530-21946531
2012-10-07 16:31:11,294 - DEBUG - Taking top 8 variants by coverage in window 9:21949506-21949507
2012-10-07 16:31:11,350 - DEBUG - Taking top 8 variants by coverage in window 9:21949582-21949588
2012-10-07 16:31:12,278 - DEBUG - Taking top 8 variants by coverage in window 9:21956812-21956813
2012-10-07 16:31:13,082 - DEBUG - Taking top 8 variants by coverage in window 9:21967988-21967989
2012-10-07 16:31:13,441 - DEBUG - Taking top 8 variants by coverage in window 9:21972926-21972935
2012-10-07 16:31:13,538 - DEBUG - Taking top 8 variants by coverage in window 9:21974956-21974957
2012-10-07 16:31:13,618 - DEBUG - Taking top 8 variants by coverage in window 9:21975867-21975868
2012-10-07 16:31:14,829 - DEBUG - Taking top 8 variants by coverage in window 9:21991549-21991550
2012-10-07 16:31:14,847 - DEBUG - Taking top 8 variants by coverage in window 9:21991567-21991568
2012-10-07 16:31:22,667 - DEBUG - Read 95159 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 16:31:22,915 - DEBUG - Read 105168 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 16:31:23,177 - DEBUG - Read 120676 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 16:31:23,467 - DEBUG - Read 119985 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 16:31:23,745 - DEBUG - Read 114061 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 16:31:23,995 - DEBUG - Read 108940 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 16:31:24,257 - DEBUG - Read 114851 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 16:31:24,508 - DEBUG - Read 104522 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 16:31:24,742 - DEBUG - Read 99901 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 16:31:24,983 - DEBUG - Read 98779 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 16:31:25,241 - DEBUG - Read 110161 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 16:31:25,473 - DEBUG - Read 99710 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 16:31:25,713 - DEBUG - Read 100379 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 16:31:25,954 - DEBUG - Read 111257 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 16:31:26,220 - DEBUG - Read 120727 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 16:31:26,452 - DEBUG - Read 92863 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 16:31:26,704 - DEBUG - Read 115315 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 16:31:26,963 - DEBUG - Read 110329 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 16:31:27,188 - DEBUG - Read 95972 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 16:31:27,430 - DEBUG - Read 95524 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 16:31:27,539 - DEBUG - Detected 24827 variants in 95159 reads
2012-10-07 16:31:27,719 - DEBUG - Detected 36234 variants in 105168 reads
2012-10-07 16:31:27,976 - DEBUG - Detected 45285 variants in 120676 reads
2012-10-07 16:31:28,256 - DEBUG - Detected 52911 variants in 119985 reads
2012-10-07 16:31:28,564 - DEBUG - Detected 59743 variants in 114061 reads
2012-10-07 16:31:28,898 - DEBUG - Detected 65621 variants in 108940 reads
2012-10-07 16:31:29,272 - DEBUG - Detected 79204 variants in 114851 reads
2012-10-07 16:31:29,693 - DEBUG - Detected 85480 variants in 104522 reads
2012-10-07 16:31:30,159 - DEBUG - Detected 92522 variants in 99901 reads
2012-10-07 16:31:30,636 - DEBUG - Detected 97166 variants in 98779 reads
2012-10-07 16:31:31,145 - DEBUG - Detected 102610 variants in 110161 reads
2012-10-07 16:31:31,665 - DEBUG - Detected 106707 variants in 99710 reads
2012-10-07 16:31:32,205 - DEBUG - Detected 110667 variants in 100379 reads
2012-10-07 16:31:32,774 - DEBUG - Detected 114633 variants in 111257 reads
2012-10-07 16:31:33,420 - DEBUG - Detected 121774 variants in 120727 reads
2012-10-07 16:31:34,013 - DEBUG - Detected 125734 variants in 92863 reads
2012-10-07 16:31:34,660 - DEBUG - Detected 129990 variants in 115315 reads
2012-10-07 16:31:35,319 - DEBUG - Detected 133936 variants in 110329 reads
2012-10-07 16:31:36,016 - DEBUG - Detected 138781 variants in 95972 reads
2012-10-07 16:31:36,707 - DEBUG - Detected 143144 variants in 95524 reads
2012-10-07 16:31:38,592 - DEBUG - Taking top 8 variants by coverage in window 9:22006320-22006321
2012-10-07 16:31:38,847 - DEBUG - Taking top 8 variants by coverage in window 9:22008626-22008627
2012-10-07 16:31:38,969 - DEBUG - Taking top 8 variants by coverage in window 9:22009766-22009768
2012-10-07 16:31:39,566 - DEBUG - Taking top 8 variants by coverage in window 9:22017597-22017602
2012-10-07 16:31:39,603 - DEBUG - Taking top 8 variants by coverage in window 9:22017676-22017677
2012-10-07 16:31:39,726 - DEBUG - Taking top 8 variants by coverage in window 9:22019146-22019147
2012-10-07 16:31:39,828 - DEBUG - Taking top 8 variants by coverage in window 9:22020259-22020263
2012-10-07 16:31:39,850 - DEBUG - Taking top 8 variants by coverage in window 9:22020409-22020410
2012-10-07 16:31:39,938 - DEBUG - Taking top 8 variants by coverage in window 9:22021490-22021491
2012-10-07 16:31:39,974 - DEBUG - Taking top 8 variants by coverage in window 9:22022166-22022167
2012-10-07 16:31:40,194 - DEBUG - Taking top 8 variants by coverage in window 9:22024624-22024634
2012-10-07 16:31:40,249 - DEBUG - Taking top 8 variants by coverage in window 9:22024676-22024684
2012-10-07 16:31:40,382 - DEBUG - Taking top 8 variants by coverage in window 9:22024756-22024762
2012-10-07 16:31:41,070 - DEBUG - Taking top 8 variants by coverage in window 9:22026401-22026402
2012-10-07 16:31:41,133 - DEBUG - Taking top 8 variants by coverage in window 9:22026788-22026789
2012-10-07 16:31:41,225 - DEBUG - Taking top 8 variants by coverage in window 9:22026875-22026876
2012-10-07 16:31:41,317 - DEBUG - Taking top 8 variants by coverage in window 9:22027214-22027215
2012-10-07 16:31:41,976 - DEBUG - Taking top 8 variants by coverage in window 9:22039352-22039368
2012-10-07 16:31:42,767 - DEBUG - Taking top 8 variants by coverage in window 9:22053260-22053261
2012-10-07 16:31:42,956 - DEBUG - Taking top 8 variants by coverage in window 9:22056446-22056447
2012-10-07 16:31:45,147 - DEBUG - Taking top 8 variants by coverage in window 9:22078140-22078147
2012-10-07 16:31:45,423 - DEBUG - Taking top 8 variants by coverage in window 9:22080628-22080629
2012-10-07 16:31:45,771 - DEBUG - Taking top 8 variants by coverage in window 9:22085740-22085741
2012-10-07 16:31:46,247 - DEBUG - Taking top 8 variants by coverage in window 9:22091791-22091798
2012-10-07 16:31:46,540 - DEBUG - Taking top 8 variants by coverage in window 9:22093392-22093395
2012-10-07 16:31:47,367 - DEBUG - Taking top 8 variants by coverage in window 9:22099575-22099576
2012-10-07 16:31:47,812 - DEBUG - Taking top 8 variants by coverage in window 9:22103521-22103525
2012-10-07 16:31:48,043 - DEBUG - Taking top 8 variants by coverage in window 9:22105229-22105230
2012-10-07 16:31:48,072 - DEBUG - Taking top 8 variants by coverage in window 9:22105252-22105253
2012-10-07 16:31:48,565 - DEBUG - Taking top 8 variants by coverage in window 9:22110070-22110075
2012-10-07 16:31:48,586 - DEBUG - Taking top 8 variants by coverage in window 9:22110252-22110253
2012-10-07 16:31:49,036 - DEBUG - Taking top 8 variants by coverage in window 9:22114044-22114045
2012-10-07 16:31:49,120 - DEBUG - Taking top 8 variants by coverage in window 9:22114452-22114455
2012-10-07 16:31:49,130 - DEBUG - Taking top 8 variants by coverage in window 9:22114457-22114458
2012-10-07 16:31:49,665 - DEBUG - Taking top 8 variants by coverage in window 9:22118974-22118975
2012-10-07 16:31:50,077 - DEBUG - Taking top 8 variants by coverage in window 9:22122366-22122368
2012-10-07 16:31:50,115 - DEBUG - Taking top 8 variants by coverage in window 9:22122412-22122413
2012-10-07 16:31:50,669 - DEBUG - Taking top 8 variants by coverage in window 9:22127052-22127053
2012-10-07 16:31:50,768 - DEBUG - Taking top 8 variants by coverage in window 9:22127164-22127165
2012-10-07 16:31:51,338 - DEBUG - Taking top 8 variants by coverage in window 9:22133873-22133875
2012-10-07 16:31:52,170 - DEBUG - Taking top 8 variants by coverage in window 9:22145139-22145141
2012-10-07 16:31:52,499 - DEBUG - Taking top 8 variants by coverage in window 9:22150359-22150360
2012-10-07 16:31:52,701 - DEBUG - Taking top 8 variants by coverage in window 9:22153014-22153015
2012-10-07 16:31:53,488 - DEBUG - Taking top 8 variants by coverage in window 9:22166985-22166986
2012-10-07 16:31:53,714 - DEBUG - Taking top 8 variants by coverage in window 9:22170080-22170081
2012-10-07 16:31:53,760 - DEBUG - Taking top 8 variants by coverage in window 9:22170110-22170115
2012-10-07 16:31:54,026 - DEBUG - Taking top 8 variants by coverage in window 9:22171638-22171639
2012-10-07 16:31:54,049 - DEBUG - Taking top 8 variants by coverage in window 9:22171667-22171668
2012-10-07 16:31:54,541 - DEBUG - Taking top 8 variants by coverage in window 9:22177863-22177873
2012-10-07 16:31:56,551 - DEBUG - Taking top 8 variants by coverage in window 9:22208078-22208092
2012-10-07 16:31:56,623 - DEBUG - Taking top 8 variants by coverage in window 9:22208508-22208509
2012-10-07 16:31:56,899 - DEBUG - Taking top 8 variants by coverage in window 9:22212057-22212058
2012-10-07 16:31:57,679 - DEBUG - Taking top 8 variants by coverage in window 9:22223956-22223957
2012-10-07 16:31:57,758 - DEBUG - Taking top 8 variants by coverage in window 9:22224863-22224864
2012-10-07 16:31:58,396 - DEBUG - Taking top 8 variants by coverage in window 9:22233404-22233411
2012-10-07 16:31:59,815 - DEBUG - Taking top 8 variants by coverage in window 9:22245180-22245181
2012-10-07 16:32:00,017 - DEBUG - Taking top 8 variants by coverage in window 9:22245621-22245623
2012-10-07 16:32:00,040 - DEBUG - Taking top 8 variants by coverage in window 9:22245628-22245629
2012-10-07 16:32:00,234 - DEBUG - Taking top 8 variants by coverage in window 9:22246762-22246763
2012-10-07 16:32:01,271 - DEBUG - Taking top 8 variants by coverage in window 9:22249670-22249676
2012-10-07 16:32:01,962 - DEBUG - Taking top 8 variants by coverage in window 9:22251730-22251733
2012-10-07 16:32:02,074 - DEBUG - Taking top 8 variants by coverage in window 9:22252301-22252302
2012-10-07 16:32:02,153 - DEBUG - Taking top 8 variants by coverage in window 9:22253402-22253403
2012-10-07 16:32:02,395 - DEBUG - Taking top 8 variants by coverage in window 9:22255065-22255069
2012-10-07 16:32:02,697 - DEBUG - Taking top 8 variants by coverage in window 9:22256142-22256143
2012-10-07 16:32:03,284 - DEBUG - Taking top 8 variants by coverage in window 9:22260616-22260631
2012-10-07 16:32:03,783 - DEBUG - Taking top 8 variants by coverage in window 9:22262278-22262279
2012-10-07 16:32:03,801 - DEBUG - Taking top 8 variants by coverage in window 9:22262279-22262281
2012-10-07 16:32:05,619 - DEBUG - Taking top 8 variants by coverage in window 9:22282085-22282088
2012-10-07 16:32:05,984 - DEBUG - Taking top 8 variants by coverage in window 9:22285157-22285158
2012-10-07 16:32:06,298 - DEBUG - Taking top 8 variants by coverage in window 9:22287817-22287818
2012-10-07 16:32:06,315 - DEBUG - Taking top 8 variants by coverage in window 9:22287819-22287820
2012-10-07 16:32:06,466 - DEBUG - Taking top 8 variants by coverage in window 9:22288591-22288593
2012-10-07 16:32:06,477 - DEBUG - Taking top 8 variants by coverage in window 9:22288594-22288595
2012-10-07 16:32:07,143 - DEBUG - Taking top 8 variants by coverage in window 9:22293606-22293607
2012-10-07 16:32:07,173 - DEBUG - Taking top 8 variants by coverage in window 9:22293738-22293746
2012-10-07 16:32:07,569 - DEBUG - Taking top 8 variants by coverage in window 9:22298494-22298495
2012-10-07 16:32:09,877 - DEBUG - Taking top 8 variants by coverage in window 9:22318136-22318137
2012-10-07 16:32:09,900 - DEBUG - Taking top 8 variants by coverage in window 9:22318181-22318182
2012-10-07 16:32:10,043 - DEBUG - Taking top 8 variants by coverage in window 9:22319325-22319326
2012-10-07 16:32:10,056 - DEBUG - Taking top 8 variants by coverage in window 9:22319364-22319365
2012-10-07 16:32:10,099 - DEBUG - Taking top 8 variants by coverage in window 9:22319829-22319830
2012-10-07 16:32:10,124 - DEBUG - Taking top 8 variants by coverage in window 9:22319861-22319862
2012-10-07 16:32:10,253 - DEBUG - Taking top 8 variants by coverage in window 9:22320540-22320541
2012-10-07 16:32:10,383 - DEBUG - Taking top 8 variants by coverage in window 9:22321475-22321476
2012-10-07 16:32:10,473 - DEBUG - Taking top 8 variants by coverage in window 9:22321871-22321872
2012-10-07 16:32:11,194 - DEBUG - Taking top 8 variants by coverage in window 9:22330330-22330331
2012-10-07 16:32:11,287 - DEBUG - Taking top 8 variants by coverage in window 9:22331181-22331183
2012-10-07 16:32:11,619 - DEBUG - Taking top 8 variants by coverage in window 9:22333625-22333626
2012-10-07 16:32:11,643 - DEBUG - Taking top 8 variants by coverage in window 9:22333668-22333669
2012-10-07 16:32:11,817 - DEBUG - Taking top 8 variants by coverage in window 9:22336595-22336596
2012-10-07 16:32:13,861 - DEBUG - Taking top 8 variants by coverage in window 9:22361450-22361451
2012-10-07 16:32:13,907 - DEBUG - Taking top 8 variants by coverage in window 9:22361467-22361468
2012-10-07 16:32:14,461 - DEBUG - Taking top 8 variants by coverage in window 9:22365748-22365750
2012-10-07 16:32:14,734 - DEBUG - Taking top 8 variants by coverage in window 9:22368840-22368842
2012-10-07 16:32:14,801 - DEBUG - Taking top 8 variants by coverage in window 9:22369038-22369039
2012-10-07 16:32:14,971 - DEBUG - Taking top 8 variants by coverage in window 9:22370809-22370812
2012-10-07 16:32:15,760 - DEBUG - Taking top 8 variants by coverage in window 9:22378115-22378116
2012-10-07 16:32:15,947 - DEBUG - Taking top 8 variants by coverage in window 9:22379684-22379685
2012-10-07 16:32:16,006 - DEBUG - Taking top 8 variants by coverage in window 9:22379972-22379974
2012-10-07 16:32:17,736 - DEBUG - Taking top 8 variants by coverage in window 9:22405999-22406000
2012-10-07 16:32:17,992 - DEBUG - Taking top 8 variants by coverage in window 9:22409789-22409790
2012-10-07 16:32:18,681 - DEBUG - Taking top 8 variants by coverage in window 9:22415596-22415598
2012-10-07 16:32:18,776 - DEBUG - Taking top 8 variants by coverage in window 9:22415620-22415624
2012-10-07 16:32:18,884 - DEBUG - Taking top 8 variants by coverage in window 9:22416192-22416193
2012-10-07 16:32:19,261 - DEBUG - Taking top 8 variants by coverage in window 9:22421606-22421607
2012-10-07 16:32:19,412 - DEBUG - Taking top 8 variants by coverage in window 9:22423430-22423431
2012-10-07 16:32:19,491 - DEBUG - Taking top 8 variants by coverage in window 9:22423556-22423559
2012-10-07 16:32:19,724 - DEBUG - Taking top 8 variants by coverage in window 9:22425464-22425469
2012-10-07 16:32:20,066 - DEBUG - Taking top 8 variants by coverage in window 9:22429812-22429824
2012-10-07 16:32:20,085 - DEBUG - Taking top 8 variants by coverage in window 9:22429826-22429827
2012-10-07 16:32:20,360 - DEBUG - Taking top 8 variants by coverage in window 9:22432998-22432999
2012-10-07 16:32:20,466 - DEBUG - Taking top 8 variants by coverage in window 9:22435230-22435231
2012-10-07 16:32:20,823 - DEBUG - Taking top 8 variants by coverage in window 9:22443204-22443205
2012-10-07 16:32:21,148 - DEBUG - Taking top 8 variants by coverage in window 9:22448375-22448376
2012-10-07 16:32:21,670 - DEBUG - Taking top 8 variants by coverage in window 9:22457772-22457774
2012-10-07 16:32:21,689 - DEBUG - Taking top 8 variants by coverage in window 9:22457968-22457969
2012-10-07 16:32:22,353 - DEBUG - Taking top 8 variants by coverage in window 9:22464623-22464626
2012-10-07 16:32:22,425 - DEBUG - Taking top 8 variants by coverage in window 9:22465430-22465431
2012-10-07 16:32:23,244 - DEBUG - Taking top 8 variants by coverage in window 9:22473311-22473317
2012-10-07 16:32:23,601 - DEBUG - Taking top 8 variants by coverage in window 9:22478321-22478328
2012-10-07 16:32:23,671 - DEBUG - Taking top 8 variants by coverage in window 9:22478945-22478951
2012-10-07 16:32:23,906 - DEBUG - Taking top 8 variants by coverage in window 9:22480117-22480118
2012-10-07 16:32:24,105 - DEBUG - Taking top 8 variants by coverage in window 9:22483131-22483134
2012-10-07 16:32:25,179 - DEBUG - Taking top 8 variants by coverage in window 9:22496128-22496129
2012-10-07 16:32:25,931 - DEBUG - Taking top 8 variants by coverage in window 9:22505951-22505952
2012-10-07 16:32:26,214 - DEBUG - Taking top 8 variants by coverage in window 9:22509603-22509615
2012-10-07 16:32:26,448 - DEBUG - Taking top 8 variants by coverage in window 9:22509831-22509832
2012-10-07 16:32:26,475 - DEBUG - Taking top 8 variants by coverage in window 9:22509840-22509843
2012-10-07 16:32:26,513 - DEBUG - Taking top 8 variants by coverage in window 9:22509848-22509849
2012-10-07 16:32:26,991 - DEBUG - Taking top 8 variants by coverage in window 9:22515397-22515398
2012-10-07 16:32:27,471 - DEBUG - Taking top 8 variants by coverage in window 9:22521809-22521810
2012-10-07 16:32:27,488 - DEBUG - Taking top 8 variants by coverage in window 9:22521836-22521837
2012-10-07 16:32:27,610 - DEBUG - Taking top 8 variants by coverage in window 9:22529750-22529751
2012-10-07 16:32:27,628 - DEBUG - Taking top 8 variants by coverage in window 9:22529836-22529837
2012-10-07 16:32:27,651 - DEBUG - Taking top 8 variants by coverage in window 9:22536262-22536276
2012-10-07 16:32:27,662 - DEBUG - Taking top 8 variants by coverage in window 9:22536279-22536280
2012-10-07 16:32:28,448 - DEBUG - Taking top 8 variants by coverage in window 9:22547751-22547752
2012-10-07 16:32:28,895 - DEBUG - Taking top 8 variants by coverage in window 9:22552815-22552816
2012-10-07 16:32:28,935 - DEBUG - Taking top 8 variants by coverage in window 9:22553618-22553619
2012-10-07 16:32:29,357 - DEBUG - Taking top 8 variants by coverage in window 9:22558107-22558108
2012-10-07 16:32:29,617 - DEBUG - Taking top 8 variants by coverage in window 9:22561823-22561824
2012-10-07 16:32:29,815 - DEBUG - Taking top 8 variants by coverage in window 9:22564623-22564624
2012-10-07 16:32:29,868 - DEBUG - Taking top 8 variants by coverage in window 9:22564641-22564651
2012-10-07 16:32:29,987 - DEBUG - Taking top 8 variants by coverage in window 9:22564713-22564714
2012-10-07 16:32:30,410 - DEBUG - Taking top 8 variants by coverage in window 9:22570532-22570546
2012-10-07 16:32:30,510 - DEBUG - Taking top 8 variants by coverage in window 9:22571373-22571374
2012-10-07 16:32:31,767 - DEBUG - Taking top 8 variants by coverage in window 9:22578996-22579001
2012-10-07 16:32:32,548 - DEBUG - Taking top 8 variants by coverage in window 9:22588160-22588163
2012-10-07 16:32:33,032 - DEBUG - Taking top 8 variants by coverage in window 9:22592278-22592280
2012-10-07 16:32:35,844 - DEBUG - Taking top 8 variants by coverage in window 9:22620715-22620716
2012-10-07 16:32:37,121 - DEBUG - Taking top 8 variants by coverage in window 9:22632649-22632650
2012-10-07 16:32:38,215 - DEBUG - Taking top 8 variants by coverage in window 9:22652717-22652718
2012-10-07 16:32:38,331 - DEBUG - Taking top 8 variants by coverage in window 9:22653889-22653890
2012-10-07 16:32:38,617 - DEBUG - Taking top 8 variants by coverage in window 9:22658706-22658707
2012-10-07 16:32:41,336 - DEBUG - Taking top 8 variants by coverage in window 9:22693685-22693686
2012-10-07 16:32:41,426 - DEBUG - Taking top 8 variants by coverage in window 9:22694219-22694220
2012-10-07 16:32:41,565 - DEBUG - Taking top 8 variants by coverage in window 9:22694589-22694590
2012-10-07 16:32:41,917 - DEBUG - Taking top 8 variants by coverage in window 9:22698969-22698972
2012-10-07 16:32:41,962 - DEBUG - Taking top 8 variants by coverage in window 9:22698990-22698991
2012-10-07 16:32:42,281 - DEBUG - Taking top 8 variants by coverage in window 9:22708632-22708633
2012-10-07 16:32:43,133 - DEBUG - Taking top 8 variants by coverage in window 9:22720138-22720139
2012-10-07 16:32:43,160 - DEBUG - Taking top 8 variants by coverage in window 9:22720378-22720381
2012-10-07 16:32:43,468 - DEBUG - Taking top 8 variants by coverage in window 9:22723127-22723128
2012-10-07 16:32:43,606 - DEBUG - Taking top 8 variants by coverage in window 9:22724362-22724363
2012-10-07 16:32:43,661 - DEBUG - Taking top 8 variants by coverage in window 9:22730855-22730856
2012-10-07 16:32:44,490 - DEBUG - Taking top 8 variants by coverage in window 9:22739390-22739391
2012-10-07 16:32:45,330 - DEBUG - Taking top 8 variants by coverage in window 9:22748885-22748887
2012-10-07 16:32:47,493 - DEBUG - Taking top 8 variants by coverage in window 9:22767691-22767695
2012-10-07 16:32:47,545 - DEBUG - Taking top 8 variants by coverage in window 9:22767706-22767707
2012-10-07 16:32:47,581 - DEBUG - Taking top 8 variants by coverage in window 9:22767739-22767740
2012-10-07 16:32:47,645 - DEBUG - Taking top 8 variants by coverage in window 9:22768224-22768225
2012-10-07 16:32:47,730 - DEBUG - Taking top 8 variants by coverage in window 9:22768253-22768254
2012-10-07 16:32:48,526 - DEBUG - Taking top 8 variants by coverage in window 9:22778774-22778775
2012-10-07 16:32:48,540 - DEBUG - Taking top 8 variants by coverage in window 9:22778786-22778787
2012-10-07 16:32:50,251 - DEBUG - Taking top 8 variants by coverage in window 9:22800145-22800146
2012-10-07 16:32:51,545 - DEBUG - Taking top 8 variants by coverage in window 9:22818721-22818722
2012-10-07 16:32:51,585 - DEBUG - Taking top 8 variants by coverage in window 9:22818799-22818800
2012-10-07 16:32:51,624 - DEBUG - Taking top 8 variants by coverage in window 9:22819272-22819276
2012-10-07 16:32:51,649 - DEBUG - Taking top 8 variants by coverage in window 9:22819320-22819321
2012-10-07 16:32:52,250 - DEBUG - Taking top 8 variants by coverage in window 9:22825261-22825262
2012-10-07 16:32:52,604 - DEBUG - Taking top 8 variants by coverage in window 9:22829090-22829093
2012-10-07 16:32:52,878 - DEBUG - Taking top 8 variants by coverage in window 9:22832650-22832651
2012-10-07 16:32:53,096 - DEBUG - Taking top 8 variants by coverage in window 9:22835712-22835713
2012-10-07 16:32:53,976 - DEBUG - Taking top 8 variants by coverage in window 9:22845084-22845085
2012-10-07 16:32:55,688 - DEBUG - Taking top 8 variants by coverage in window 9:22860578-22860579
2012-10-07 16:32:55,782 - DEBUG - Taking top 8 variants by coverage in window 9:22862000-22862001
2012-10-07 16:32:56,483 - DEBUG - Taking top 8 variants by coverage in window 9:22872177-22872178
2012-10-07 16:32:56,797 - DEBUG - Taking top 8 variants by coverage in window 9:22877129-22877130
2012-10-07 16:32:57,317 - DEBUG - Taking top 8 variants by coverage in window 9:22884876-22884881
2012-10-07 16:32:57,434 - DEBUG - Taking top 8 variants by coverage in window 9:22886377-22886379
2012-10-07 16:32:57,937 - DEBUG - Taking top 8 variants by coverage in window 9:22889692-22889693
2012-10-07 16:32:58,061 - DEBUG - Taking top 8 variants by coverage in window 9:22891695-22891702
2012-10-07 16:32:58,123 - DEBUG - Taking top 8 variants by coverage in window 9:22891730-22891731
2012-10-07 16:32:58,387 - DEBUG - Taking top 8 variants by coverage in window 9:22894419-22894420
2012-10-07 16:32:58,417 - DEBUG - Taking top 8 variants by coverage in window 9:22894479-22894488
2012-10-07 16:32:58,509 - DEBUG - Taking top 8 variants by coverage in window 9:22895008-22895009
2012-10-07 16:32:59,233 - DEBUG - Taking top 8 variants by coverage in window 9:22907635-22907636
2012-10-07 16:32:59,278 - DEBUG - Taking top 8 variants by coverage in window 9:22907643-22907644
2012-10-07 16:33:04,285 - DEBUG - Taking top 8 variants by coverage in window 9:22977812-22977818
2012-10-07 16:33:04,327 - DEBUG - Taking top 8 variants by coverage in window 9:22977858-22977859
2012-10-07 16:33:04,709 - DEBUG - Taking top 8 variants by coverage in window 9:22981805-22981821
2012-10-07 16:33:04,871 - DEBUG - Taking top 8 variants by coverage in window 9:22982693-22982694
2012-10-07 16:33:05,168 - DEBUG - Taking top 8 variants by coverage in window 9:22986710-22986712
2012-10-07 16:33:05,222 - DEBUG - Taking top 8 variants by coverage in window 9:22986937-22986938
2012-10-07 16:33:05,355 - DEBUG - Taking top 8 variants by coverage in window 9:22988316-22988317
2012-10-07 16:33:05,649 - DEBUG - Taking top 8 variants by coverage in window 9:22989681-22989682
2012-10-07 16:33:06,269 - DEBUG - Taking top 8 variants by coverage in window 9:22999272-22999274
2012-10-07 16:33:07,289 - DEBUG - Read 86915 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 16:33:07,514 - DEBUG - Read 93009 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 16:33:07,763 - DEBUG - Read 110563 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 16:33:08,147 - DEBUG - Read 109062 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 16:33:08,412 - DEBUG - Read 106733 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 16:33:08,646 - DEBUG - Read 98800 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 16:33:08,893 - DEBUG - Read 105059 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 16:33:09,124 - DEBUG - Read 92624 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 16:33:09,345 - DEBUG - Read 89841 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 16:33:09,576 - DEBUG - Read 92913 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 16:33:09,821 - DEBUG - Read 102669 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 16:33:10,034 - DEBUG - Read 89798 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 16:33:10,258 - DEBUG - Read 91519 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 16:33:10,484 - DEBUG - Read 100716 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 16:33:10,737 - DEBUG - Read 110268 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 16:33:10,949 - DEBUG - Read 84551 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 16:33:11,187 - DEBUG - Read 104955 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 16:33:11,433 - DEBUG - Read 102198 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 16:33:11,632 - DEBUG - Read 83798 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 16:33:11,854 - DEBUG - Read 87764 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 16:33:11,950 - DEBUG - Detected 23278 variants in 86915 reads
2012-10-07 16:33:12,116 - DEBUG - Detected 35028 variants in 93009 reads
2012-10-07 16:33:12,327 - DEBUG - Detected 44098 variants in 110563 reads
2012-10-07 16:33:12,571 - DEBUG - Detected 50297 variants in 109062 reads
2012-10-07 16:33:12,836 - DEBUG - Detected 56177 variants in 106733 reads
2012-10-07 16:33:13,121 - DEBUG - Detected 61450 variants in 98800 reads
2012-10-07 16:33:13,444 - DEBUG - Detected 73985 variants in 105059 reads
2012-10-07 16:33:13,807 - DEBUG - Detected 79379 variants in 92624 reads
2012-10-07 16:33:14,211 - DEBUG - Detected 85278 variants in 89841 reads
2012-10-07 16:33:14,628 - DEBUG - Detected 92498 variants in 92913 reads
2012-10-07 16:33:15,073 - DEBUG - Detected 97035 variants in 102669 reads
2012-10-07 16:33:15,524 - DEBUG - Detected 100686 variants in 89798 reads
2012-10-07 16:33:15,995 - DEBUG - Detected 104371 variants in 91519 reads
2012-10-07 16:33:16,491 - DEBUG - Detected 107975 variants in 100716 reads
2012-10-07 16:33:17,016 - DEBUG - Detected 114895 variants in 110268 reads
2012-10-07 16:33:17,585 - DEBUG - Detected 118982 variants in 84551 reads
2012-10-07 16:33:18,155 - DEBUG - Detected 122908 variants in 104955 reads
2012-10-07 16:33:18,741 - DEBUG - Detected 127489 variants in 102198 reads
2012-10-07 16:33:19,329 - DEBUG - Detected 131004 variants in 83798 reads
2012-10-07 16:33:19,932 - DEBUG - Detected 135029 variants in 87764 reads
2012-10-07 16:33:21,192 - DEBUG - Taking top 8 variants by coverage in window 9:23004675-23004676
2012-10-07 16:33:21,375 - DEBUG - Taking top 8 variants by coverage in window 9:23006816-23006817
2012-10-07 16:33:21,857 - DEBUG - Taking top 8 variants by coverage in window 9:23014300-23014301
2012-10-07 16:33:21,939 - DEBUG - Taking top 8 variants by coverage in window 9:23014481-23014482
2012-10-07 16:33:22,380 - DEBUG - Taking top 8 variants by coverage in window 9:23020864-23020865
2012-10-07 16:33:23,368 - DEBUG - Taking top 8 variants by coverage in window 9:23039254-23039255
2012-10-07 16:33:23,887 - DEBUG - Taking top 8 variants by coverage in window 9:23048280-23048281
2012-10-07 16:33:24,161 - DEBUG - Taking top 8 variants by coverage in window 9:23051585-23051586
2012-10-07 16:33:24,243 - DEBUG - Taking top 8 variants by coverage in window 9:23052566-23052567
2012-10-07 16:33:25,826 - DEBUG - Taking top 8 variants by coverage in window 9:23077882-23077884
2012-10-07 16:33:26,669 - DEBUG - Taking top 8 variants by coverage in window 9:23100950-23100952
2012-10-07 16:33:27,336 - DEBUG - Taking top 8 variants by coverage in window 9:23109515-23109516
2012-10-07 16:33:27,776 - DEBUG - Taking top 8 variants by coverage in window 9:23117173-23117174
2012-10-07 16:33:28,156 - DEBUG - Taking top 8 variants by coverage in window 9:23121456-23121457
2012-10-07 16:33:28,901 - DEBUG - Taking top 8 variants by coverage in window 9:23134789-23134791
2012-10-07 16:33:29,065 - DEBUG - Taking top 8 variants by coverage in window 9:23136551-23136558
2012-10-07 16:33:29,250 - DEBUG - Taking top 8 variants by coverage in window 9:23136820-23136821
2012-10-07 16:33:29,263 - DEBUG - Taking top 8 variants by coverage in window 9:23136825-23136827
2012-10-07 16:33:30,052 - DEBUG - Taking top 8 variants by coverage in window 9:23152984-23152989
2012-10-07 16:33:30,444 - DEBUG - Taking top 8 variants by coverage in window 9:23158026-23158028
2012-10-07 16:33:30,485 - DEBUG - Taking top 8 variants by coverage in window 9:23158029-23158030
2012-10-07 16:33:32,224 - DEBUG - Taking top 8 variants by coverage in window 9:23176601-23176607
2012-10-07 16:33:33,674 - DEBUG - Taking top 8 variants by coverage in window 9:23203356-23203357
2012-10-07 16:33:33,750 - DEBUG - Taking top 8 variants by coverage in window 9:23204176-23204177
2012-10-07 16:33:33,763 - DEBUG - Taking top 8 variants by coverage in window 9:23204201-23204202
2012-10-07 16:33:34,694 - DEBUG - Taking top 8 variants by coverage in window 9:23217983-23217984
2012-10-07 16:33:36,137 - DEBUG - Taking top 8 variants by coverage in window 9:23236071-23236072
2012-10-07 16:33:36,512 - DEBUG - Taking top 8 variants by coverage in window 9:23239363-23239364
2012-10-07 16:33:37,136 - DEBUG - Taking top 8 variants by coverage in window 9:23247945-23247946
2012-10-07 16:33:38,314 - DEBUG - Taking top 8 variants by coverage in window 9:23266406-23266412
2012-10-07 16:33:39,451 - DEBUG - Taking top 8 variants by coverage in window 9:23281586-23281587
2012-10-07 16:33:40,355 - DEBUG - Taking top 8 variants by coverage in window 9:23291343-23291347
2012-10-07 16:33:41,206 - DEBUG - Taking top 8 variants by coverage in window 9:23301124-23301125
2012-10-07 16:33:41,235 - DEBUG - Taking top 8 variants by coverage in window 9:23301130-23301131
2012-10-07 16:33:42,323 - DEBUG - Taking top 8 variants by coverage in window 9:23319279-23319281
2012-10-07 16:33:42,371 - DEBUG - Taking top 8 variants by coverage in window 9:23319549-23319550
2012-10-07 16:33:42,646 - DEBUG - Taking top 8 variants by coverage in window 9:23323388-23323389
2012-10-07 16:33:42,684 - DEBUG - Taking top 8 variants by coverage in window 9:23323554-23323555
2012-10-07 16:33:43,719 - DEBUG - Taking top 8 variants by coverage in window 9:23338942-23338944
2012-10-07 16:33:43,977 - DEBUG - Taking top 8 variants by coverage in window 9:23342046-23342047
2012-10-07 16:33:44,685 - DEBUG - Taking top 8 variants by coverage in window 9:23351357-23351358
2012-10-07 16:33:45,110 - DEBUG - Taking top 8 variants by coverage in window 9:23355596-23355602
2012-10-07 16:33:45,243 - DEBUG - Taking top 8 variants by coverage in window 9:23356731-23356732
2012-10-07 16:33:45,370 - DEBUG - Taking top 8 variants by coverage in window 9:23357856-23357857
2012-10-07 16:33:47,690 - DEBUG - Taking top 8 variants by coverage in window 9:23390354-23390355
2012-10-07 16:33:49,480 - DEBUG - Taking top 8 variants by coverage in window 9:23405816-23405817
2012-10-07 16:33:50,357 - DEBUG - Taking top 8 variants by coverage in window 9:23412706-23412707
2012-10-07 16:33:50,587 - DEBUG - Taking top 8 variants by coverage in window 9:23416731-23416734
2012-10-07 16:33:50,841 - DEBUG - Taking top 8 variants by coverage in window 9:23418277-23418278
2012-10-07 16:33:51,497 - DEBUG - Taking top 8 variants by coverage in window 9:23424324-23424326
2012-10-07 16:33:52,533 - DEBUG - Taking top 8 variants by coverage in window 9:23435183-23435184
2012-10-07 16:33:52,868 - DEBUG - Taking top 8 variants by coverage in window 9:23438182-23438183
2012-10-07 16:33:52,994 - DEBUG - Taking top 8 variants by coverage in window 9:23442242-23442254
2012-10-07 16:33:53,290 - DEBUG - Taking top 8 variants by coverage in window 9:23446186-23446190
2012-10-07 16:33:54,736 - DEBUG - Taking top 8 variants by coverage in window 9:23469655-23469656
2012-10-07 16:33:55,035 - DEBUG - Taking top 8 variants by coverage in window 9:23472619-23472624
2012-10-07 16:33:55,618 - DEBUG - Taking top 8 variants by coverage in window 9:23478964-23478965
2012-10-07 16:33:55,647 - DEBUG - Taking top 8 variants by coverage in window 9:23479391-23479392
2012-10-07 16:33:58,139 - DEBUG - Taking top 8 variants by coverage in window 9:23510051-23510052
2012-10-07 16:33:58,151 - DEBUG - Taking top 8 variants by coverage in window 9:23510067-23510068
2012-10-07 16:33:58,217 - DEBUG - Taking top 8 variants by coverage in window 9:23511222-23511223
2012-10-07 16:33:59,954 - DEBUG - Taking top 8 variants by coverage in window 9:23527808-23527811
2012-10-07 16:34:00,000 - DEBUG - Taking top 8 variants by coverage in window 9:23528249-23528250
2012-10-07 16:34:01,004 - DEBUG - Taking top 8 variants by coverage in window 9:23536172-23536178
2012-10-07 16:34:01,750 - DEBUG - Taking top 8 variants by coverage in window 9:23545389-23545399
2012-10-07 16:34:01,843 - DEBUG - Taking top 8 variants by coverage in window 9:23549292-23549293
2012-10-07 16:34:05,999 - DEBUG - Taking top 8 variants by coverage in window 9:23599421-23599422
2012-10-07 16:34:07,950 - DEBUG - Taking top 8 variants by coverage in window 9:23621888-23621889
2012-10-07 16:34:08,111 - DEBUG - Taking top 8 variants by coverage in window 9:23623562-23623563
2012-10-07 16:34:08,130 - DEBUG - Taking top 8 variants by coverage in window 9:23623573-23623574
2012-10-07 16:34:10,259 - DEBUG - Taking top 8 variants by coverage in window 9:23651160-23651180
2012-10-07 16:34:10,297 - DEBUG - Taking top 8 variants by coverage in window 9:23651289-23651290
2012-10-07 16:34:11,009 - DEBUG - Taking top 8 variants by coverage in window 9:23659356-23659368
2012-10-07 16:34:11,710 - DEBUG - Taking top 8 variants by coverage in window 9:23669301-23669302
2012-10-07 16:34:12,913 - DEBUG - Taking top 8 variants by coverage in window 9:23687936-23687937
2012-10-07 16:34:12,995 - DEBUG - Taking top 8 variants by coverage in window 9:23688778-23688779
2012-10-07 16:34:13,158 - DEBUG - Taking top 8 variants by coverage in window 9:23689593-23689595
2012-10-07 16:34:13,180 - DEBUG - Taking top 8 variants by coverage in window 9:23689602-23689603
2012-10-07 16:34:13,266 - DEBUG - Taking top 8 variants by coverage in window 9:23690167-23690168
2012-10-07 16:34:13,725 - DEBUG - Taking top 8 variants by coverage in window 9:23693808-23693809
2012-10-07 16:34:15,675 - DEBUG - Taking top 8 variants by coverage in window 9:23724464-23724465
2012-10-07 16:34:16,087 - DEBUG - Taking top 8 variants by coverage in window 9:23728088-23728089
2012-10-07 16:34:16,405 - DEBUG - Taking top 8 variants by coverage in window 9:23729880-23729881
2012-10-07 16:34:16,641 - DEBUG - Taking top 8 variants by coverage in window 9:23732369-23732370
2012-10-07 16:34:17,140 - DEBUG - Taking top 8 variants by coverage in window 9:23740777-23740778
2012-10-07 16:34:17,378 - DEBUG - Taking top 8 variants by coverage in window 9:23744336-23744337
2012-10-07 16:34:17,896 - DEBUG - Taking top 8 variants by coverage in window 9:23750625-23750629
2012-10-07 16:34:18,217 - DEBUG - Taking top 8 variants by coverage in window 9:23754991-23754995
2012-10-07 16:34:18,511 - DEBUG - Taking top 8 variants by coverage in window 9:23758646-23758647
2012-10-07 16:34:20,194 - DEBUG - Taking top 8 variants by coverage in window 9:23772823-23772824
2012-10-07 16:34:20,272 - DEBUG - Taking top 8 variants by coverage in window 9:23773321-23773322
2012-10-07 16:34:20,288 - DEBUG - Taking top 8 variants by coverage in window 9:23773325-23773326
2012-10-07 16:34:20,453 - DEBUG - Taking top 8 variants by coverage in window 9:23774081-23774083
2012-10-07 16:34:20,802 - DEBUG - Taking top 8 variants by coverage in window 9:23777198-23777199
2012-10-07 16:34:21,505 - DEBUG - Taking top 8 variants by coverage in window 9:23783585-23783590
2012-10-07 16:34:21,565 - DEBUG - Taking top 8 variants by coverage in window 9:23784372-23784373
2012-10-07 16:34:24,030 - DEBUG - Taking top 8 variants by coverage in window 9:23817841-23817844
2012-10-07 16:34:24,306 - DEBUG - Taking top 8 variants by coverage in window 9:23817875-23817876
2012-10-07 16:34:25,697 - DEBUG - Taking top 8 variants by coverage in window 9:23837734-23837738
2012-10-07 16:34:26,196 - DEBUG - Taking top 8 variants by coverage in window 9:23844866-23844867
2012-10-07 16:34:26,302 - DEBUG - Taking top 8 variants by coverage in window 9:23851093-23851094
2012-10-07 16:34:26,348 - DEBUG - Taking top 8 variants by coverage in window 9:23851329-23851331
2012-10-07 16:34:27,619 - DEBUG - Taking top 8 variants by coverage in window 9:23862068-23862069
2012-10-07 16:34:28,239 - DEBUG - Taking top 8 variants by coverage in window 9:23867454-23867456
2012-10-07 16:34:28,397 - DEBUG - Taking top 8 variants by coverage in window 9:23868894-23868900
2012-10-07 16:34:30,082 - DEBUG - Taking top 8 variants by coverage in window 9:23884538-23884539
2012-10-07 16:34:30,261 - DEBUG - Taking top 8 variants by coverage in window 9:23885731-23885732
2012-10-07 16:34:30,756 - DEBUG - Taking top 8 variants by coverage in window 9:23889800-23889801
2012-10-07 16:34:31,169 - DEBUG - Taking top 8 variants by coverage in window 9:23895730-23895731
2012-10-07 16:34:31,973 - DEBUG - Taking top 8 variants by coverage in window 9:23904114-23904115
2012-10-07 16:34:32,324 - DEBUG - Taking top 8 variants by coverage in window 9:23908426-23908428
2012-10-07 16:34:32,830 - DEBUG - Taking top 8 variants by coverage in window 9:23914462-23914463
2012-10-07 16:34:33,003 - DEBUG - Taking top 8 variants by coverage in window 9:23916915-23916916
2012-10-07 16:34:33,037 - DEBUG - Taking top 8 variants by coverage in window 9:23918590-23918591
2012-10-07 16:34:33,309 - DEBUG - Taking top 8 variants by coverage in window 9:23923531-23923532
2012-10-07 16:34:33,340 - DEBUG - Taking top 8 variants by coverage in window 9:23923553-23923554
2012-10-07 16:34:34,047 - DEBUG - Taking top 8 variants by coverage in window 9:23931694-23931697
2012-10-07 16:34:35,504 - DEBUG - Taking top 8 variants by coverage in window 9:23960611-23960617
2012-10-07 16:34:36,193 - DEBUG - Taking top 8 variants by coverage in window 9:23962119-23962120
2012-10-07 16:34:36,775 - DEBUG - Taking top 8 variants by coverage in window 9:23970255-23970256
2012-10-07 16:34:36,810 - DEBUG - Taking top 8 variants by coverage in window 9:23970429-23970434
2012-10-07 16:34:37,410 - DEBUG - Taking top 8 variants by coverage in window 9:23978704-23978705
2012-10-07 16:34:38,716 - DEBUG - Taking top 8 variants by coverage in window 9:23992840-23992841
2012-10-07 16:34:39,908 - DEBUG - Read 92247 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 16:34:40,195 - DEBUG - Read 100242 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 16:34:40,459 - DEBUG - Read 115673 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 16:34:40,769 - DEBUG - Read 116810 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 16:34:41,067 - DEBUG - Read 112644 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 16:34:41,379 - DEBUG - Read 106176 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 16:34:41,647 - DEBUG - Read 111226 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 16:34:41,915 - DEBUG - Read 99176 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 16:34:42,165 - DEBUG - Read 95649 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 16:34:42,415 - DEBUG - Read 97557 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 16:34:42,687 - DEBUG - Read 107770 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 16:34:42,927 - DEBUG - Read 95190 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 16:34:43,189 - DEBUG - Read 98239 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 16:34:43,442 - DEBUG - Read 107340 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 16:34:43,732 - DEBUG - Read 117081 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 16:34:44,043 - DEBUG - Read 90134 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 16:34:44,302 - DEBUG - Read 111581 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 16:34:44,580 - DEBUG - Read 108808 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 16:34:44,809 - DEBUG - Read 91203 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 16:34:45,061 - DEBUG - Read 93515 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 16:34:45,168 - DEBUG - Detected 22358 variants in 92247 reads
2012-10-07 16:34:45,336 - DEBUG - Detected 29809 variants in 100242 reads
2012-10-07 16:34:45,553 - DEBUG - Detected 40112 variants in 115673 reads
2012-10-07 16:34:45,819 - DEBUG - Detected 51030 variants in 116810 reads
2012-10-07 16:34:46,120 - DEBUG - Detected 57335 variants in 112644 reads
2012-10-07 16:34:46,469 - DEBUG - Detected 62884 variants in 106176 reads
2012-10-07 16:34:46,833 - DEBUG - Detected 75344 variants in 111226 reads
2012-10-07 16:34:47,243 - DEBUG - Detected 81048 variants in 99176 reads
2012-10-07 16:34:47,673 - DEBUG - Detected 86922 variants in 95649 reads
2012-10-07 16:34:48,133 - DEBUG - Detected 91291 variants in 97557 reads
2012-10-07 16:34:48,619 - DEBUG - Detected 95808 variants in 107770 reads
2012-10-07 16:34:49,114 - DEBUG - Detected 100120 variants in 95190 reads
2012-10-07 16:34:49,672 - DEBUG - Detected 104137 variants in 98239 reads
2012-10-07 16:34:50,230 - DEBUG - Detected 108189 variants in 107340 reads
2012-10-07 16:34:50,806 - DEBUG - Detected 115119 variants in 117081 reads
2012-10-07 16:34:51,384 - DEBUG - Detected 118835 variants in 90134 reads
2012-10-07 16:34:52,002 - DEBUG - Detected 121909 variants in 111581 reads
2012-10-07 16:34:52,689 - DEBUG - Detected 126467 variants in 108808 reads
2012-10-07 16:34:53,324 - DEBUG - Detected 130097 variants in 91203 reads
2012-10-07 16:34:53,979 - DEBUG - Detected 134167 variants in 93515 reads
2012-10-07 16:34:55,233 - DEBUG - Taking top 8 variants by coverage in window 9:24005137-24005138
2012-10-07 16:34:55,534 - DEBUG - Taking top 8 variants by coverage in window 9:24010016-24010017
2012-10-07 16:34:55,686 - DEBUG - Taking top 8 variants by coverage in window 9:24011375-24011376
2012-10-07 16:34:56,254 - DEBUG - Taking top 8 variants by coverage in window 9:24016141-24016142
2012-10-07 16:34:56,649 - DEBUG - Taking top 8 variants by coverage in window 9:24019150-24019157
2012-10-07 16:34:56,664 - DEBUG - Taking top 8 variants by coverage in window 9:24019158-24019159
2012-10-07 16:34:57,075 - DEBUG - Taking top 8 variants by coverage in window 9:24021697-24021698
2012-10-07 16:34:58,243 - DEBUG - Taking top 8 variants by coverage in window 9:24035487-24035488
2012-10-07 16:34:58,255 - DEBUG - Taking top 8 variants by coverage in window 9:24035488-24035489
2012-10-07 16:34:58,279 - DEBUG - Taking top 8 variants by coverage in window 9:24035606-24035607
2012-10-07 16:34:58,568 - DEBUG - Taking top 8 variants by coverage in window 9:24038797-24038798
2012-10-07 16:34:58,648 - DEBUG - Taking top 8 variants by coverage in window 9:24038918-24038919
2012-10-07 16:34:58,948 - DEBUG - Taking top 8 variants by coverage in window 9:24044455-24044456
2012-10-07 16:34:59,534 - DEBUG - Taking top 8 variants by coverage in window 9:24055615-24055616
2012-10-07 16:35:00,001 - DEBUG - Taking top 8 variants by coverage in window 9:24064978-24064979
2012-10-07 16:35:01,187 - DEBUG - Taking top 8 variants by coverage in window 9:24092560-24092576
2012-10-07 16:35:01,203 - DEBUG - Taking top 8 variants by coverage in window 9:24092633-24092650
2012-10-07 16:35:01,228 - DEBUG - Taking top 8 variants by coverage in window 9:24092656-24092657
2012-10-07 16:35:01,238 - DEBUG - Taking top 8 variants by coverage in window 9:24092661-24092662
2012-10-07 16:35:01,638 - DEBUG - Taking top 8 variants by coverage in window 9:24096182-24096183
2012-10-07 16:35:02,912 - DEBUG - Taking top 8 variants by coverage in window 9:24113843-24113844
2012-10-07 16:35:03,052 - DEBUG - Taking top 8 variants by coverage in window 9:24115284-24115285
2012-10-07 16:35:03,276 - DEBUG - Taking top 8 variants by coverage in window 9:24119087-24119089
2012-10-07 16:35:03,450 - DEBUG - Taking top 8 variants by coverage in window 9:24125180-24125190
2012-10-07 16:35:04,879 - DEBUG - Taking top 8 variants by coverage in window 9:24147061-24147070
2012-10-07 16:35:04,959 - DEBUG - Taking top 8 variants by coverage in window 9:24147376-24147377
2012-10-07 16:35:05,758 - DEBUG - Taking top 8 variants by coverage in window 9:24152083-24152084
2012-10-07 16:35:05,774 - DEBUG - Taking top 8 variants by coverage in window 9:24152084-24152085
2012-10-07 16:35:07,537 - DEBUG - Taking top 8 variants by coverage in window 9:24176104-24176105
2012-10-07 16:35:07,571 - DEBUG - Taking top 8 variants by coverage in window 9:24176128-24176129
2012-10-07 16:35:07,743 - DEBUG - Taking top 8 variants by coverage in window 9:24176791-24176796
2012-10-07 16:35:07,864 - DEBUG - Taking top 8 variants by coverage in window 9:24177491-24177492
2012-10-07 16:35:07,871 - DEBUG - Taking top 8 variants by coverage in window 9:24177500-24177501
2012-10-07 16:35:07,902 - DEBUG - Taking top 8 variants by coverage in window 9:24177599-24177607
2012-10-07 16:35:08,275 - DEBUG - Taking top 8 variants by coverage in window 9:24179210-24179211
2012-10-07 16:35:09,129 - DEBUG - Taking top 8 variants by coverage in window 9:24189555-24189556
2012-10-07 16:35:09,298 - DEBUG - Taking top 8 variants by coverage in window 9:24191480-24191481
2012-10-07 16:35:09,340 - DEBUG - Taking top 8 variants by coverage in window 9:24191985-24191986
2012-10-07 16:35:09,353 - DEBUG - Taking top 8 variants by coverage in window 9:24192008-24192009
2012-10-07 16:35:09,445 - DEBUG - Taking top 8 variants by coverage in window 9:24193832-24193835
2012-10-07 16:35:09,966 - DEBUG - Taking top 8 variants by coverage in window 9:24201162-24201163
2012-10-07 16:35:10,512 - DEBUG - Taking top 8 variants by coverage in window 9:24205191-24205192
2012-10-07 16:35:10,518 - DEBUG - Taking top 8 variants by coverage in window 9:24205193-24205194
2012-10-07 16:35:10,689 - DEBUG - Taking top 8 variants by coverage in window 9:24207588-24207593
2012-10-07 16:35:10,751 - DEBUG - Taking top 8 variants by coverage in window 9:24207614-24207618
2012-10-07 16:35:11,110 - DEBUG - Taking top 8 variants by coverage in window 9:24211425-24211426
2012-10-07 16:35:11,387 - DEBUG - Taking top 8 variants by coverage in window 9:24215276-24215277
2012-10-07 16:35:12,631 - DEBUG - Taking top 8 variants by coverage in window 9:24236222-24236223
2012-10-07 16:35:12,966 - DEBUG - Taking top 8 variants by coverage in window 9:24242309-24242310
2012-10-07 16:35:13,416 - DEBUG - Taking top 8 variants by coverage in window 9:24248666-24248667
2012-10-07 16:35:14,544 - DEBUG - Taking top 8 variants by coverage in window 9:24263396-24263398
2012-10-07 16:35:14,689 - DEBUG - Taking top 8 variants by coverage in window 9:24264692-24264693
2012-10-07 16:35:14,812 - DEBUG - Taking top 8 variants by coverage in window 9:24265864-24265867
2012-10-07 16:35:15,248 - DEBUG - Taking top 8 variants by coverage in window 9:24274570-24274574
2012-10-07 16:35:15,572 - DEBUG - Taking top 8 variants by coverage in window 9:24275837-24275838
2012-10-07 16:35:15,592 - DEBUG - Taking top 8 variants by coverage in window 9:24275845-24275846
2012-10-07 16:35:16,990 - DEBUG - Taking top 8 variants by coverage in window 9:24299762-24299763
2012-10-07 16:35:17,018 - DEBUG - Taking top 8 variants by coverage in window 9:24299768-24299769
2012-10-07 16:35:17,034 - DEBUG - Taking top 8 variants by coverage in window 9:24299769-24299771
2012-10-07 16:35:17,102 - DEBUG - Taking top 8 variants by coverage in window 9:24300474-24300475
2012-10-07 16:35:17,254 - DEBUG - Taking top 8 variants by coverage in window 9:24301867-24301868
2012-10-07 16:35:17,473 - DEBUG - Taking top 8 variants by coverage in window 9:24303543-24303545
2012-10-07 16:35:17,521 - DEBUG - Taking top 8 variants by coverage in window 9:24303569-24303573
2012-10-07 16:35:17,940 - DEBUG - Taking top 8 variants by coverage in window 9:24312446-24312449
2012-10-07 16:35:18,955 - DEBUG - Taking top 8 variants by coverage in window 9:24326887-24326888
2012-10-07 16:35:18,986 - DEBUG - Taking top 8 variants by coverage in window 9:24326900-24326901
2012-10-07 16:35:19,077 - DEBUG - Taking top 8 variants by coverage in window 9:24329144-24329145
2012-10-07 16:35:19,203 - DEBUG - Taking top 8 variants by coverage in window 9:24330004-24330005
2012-10-07 16:35:19,289 - DEBUG - Taking top 8 variants by coverage in window 9:24336251-24336252
2012-10-07 16:35:20,245 - DEBUG - Taking top 8 variants by coverage in window 9:24346461-24346462
2012-10-07 16:35:20,673 - DEBUG - Taking top 8 variants by coverage in window 9:24346466-24346467
2012-10-07 16:35:21,266 - DEBUG - Taking top 8 variants by coverage in window 9:24346471-24346472
2012-10-07 16:35:21,861 - DEBUG - Taking top 8 variants by coverage in window 9:24346473-24346475
2012-10-07 16:35:22,612 - DEBUG - Taking top 8 variants by coverage in window 9:24346479-24346480
2012-10-07 16:35:23,079 - DEBUG - Taking top 8 variants by coverage in window 9:24346481-24346483
2012-10-07 16:35:23,754 - DEBUG - Taking top 8 variants by coverage in window 9:24346484-24346488
2012-10-07 16:35:26,379 - DEBUG - Taking top 8 variants by coverage in window 9:24346489-24346490
2012-10-07 16:35:27,054 - DEBUG - Taking top 8 variants by coverage in window 9:24346491-24346492
2012-10-07 16:35:27,998 - DEBUG - Taking top 8 variants by coverage in window 9:24346493-24346494
2012-10-07 16:35:28,389 - DEBUG - Taking top 8 variants by coverage in window 9:24346494-24346495
2012-10-07 16:35:30,587 - DEBUG - Taking top 8 variants by coverage in window 9:24346497-24346498
2012-10-07 16:35:32,326 - DEBUG - Taking top 8 variants by coverage in window 9:24346500-24346501
2012-10-07 16:35:33,073 - DEBUG - Taking top 8 variants by coverage in window 9:24346501-24346502
2012-10-07 16:35:35,277 - DEBUG - Taking top 8 variants by coverage in window 9:24346505-24346506
2012-10-07 16:35:37,348 - DEBUG - Taking top 8 variants by coverage in window 9:24346507-24346509
2012-10-07 16:35:40,210 - DEBUG - Taking top 8 variants by coverage in window 9:24346511-24346512
2012-10-07 16:35:43,894 - DEBUG - Taking top 8 variants by coverage in window 9:24346517-24346518
2012-10-07 16:35:45,175 - DEBUG - Taking top 8 variants by coverage in window 9:24346519-24346520
2012-10-07 16:35:46,727 - DEBUG - Taking top 8 variants by coverage in window 9:24346521-24346522
2012-10-07 16:35:47,673 - DEBUG - Taking top 8 variants by coverage in window 9:24346522-24346525
2012-10-07 16:35:53,810 - DEBUG - Taking top 8 variants by coverage in window 9:24346531-24346533
2012-10-07 16:35:55,823 - DEBUG - Taking top 8 variants by coverage in window 9:24346534-24346535
2012-10-07 16:35:58,731 - DEBUG - Taking top 8 variants by coverage in window 9:24346539-24346540
2012-10-07 16:35:59,678 - DEBUG - Taking top 8 variants by coverage in window 9:24346540-24346543
2012-10-07 16:36:01,714 - DEBUG - Taking top 8 variants by coverage in window 9:24346544-24346545
2012-10-07 16:36:03,192 - DEBUG - Taking top 8 variants by coverage in window 9:24346546-24346547
2012-10-07 16:36:06,253 - DEBUG - Taking top 8 variants by coverage in window 9:24346550-24346551
2012-10-07 16:36:08,167 - DEBUG - Taking top 8 variants by coverage in window 9:24346553-24346556
2012-10-07 16:36:11,771 - DEBUG - Taking top 8 variants by coverage in window 9:24346557-24346558
2012-10-07 16:36:12,687 - DEBUG - Taking top 8 variants by coverage in window 9:24346558-24346563
2012-10-07 16:36:19,630 - DEBUG - Taking top 8 variants by coverage in window 9:24346564-24346565
2012-10-07 16:36:23,811 - DEBUG - Taking top 8 variants by coverage in window 9:24346571-24346572
2012-10-07 16:36:24,607 - DEBUG - Taking top 8 variants by coverage in window 9:24346572-24346573
2012-10-07 16:36:26,739 - DEBUG - Taking top 8 variants by coverage in window 9:24346578-24346579
2012-10-07 16:36:27,860 - DEBUG - Taking top 8 variants by coverage in window 9:24346580-24346582
2012-10-07 16:36:29,995 - DEBUG - Taking top 8 variants by coverage in window 9:24346586-24346589
2012-10-07 16:36:33,273 - DEBUG - Taking top 8 variants by coverage in window 9:24346592-24346593
2012-10-07 16:36:34,135 - DEBUG - Taking top 8 variants by coverage in window 9:24346594-24346595
2012-10-07 16:36:35,892 - DEBUG - Taking top 8 variants by coverage in window 9:24346598-24346599
2012-10-07 16:36:37,125 - DEBUG - Taking top 8 variants by coverage in window 9:24346600-24346601
2012-10-07 16:36:37,562 - DEBUG - Taking top 8 variants by coverage in window 9:24346601-24346602
2012-10-07 16:36:37,906 - DEBUG - Taking top 8 variants by coverage in window 9:24346602-24346603
2012-10-07 16:36:39,941 - DEBUG - Taking top 8 variants by coverage in window 9:24387616-24387617
2012-10-07 16:36:39,990 - DEBUG - Taking top 8 variants by coverage in window 9:24388758-24388759
2012-10-07 16:36:40,322 - DEBUG - Taking top 8 variants by coverage in window 9:24396303-24396304
2012-10-07 16:36:41,272 - DEBUG - Taking top 8 variants by coverage in window 9:24414191-24414193
2012-10-07 16:36:42,571 - DEBUG - Taking top 8 variants by coverage in window 9:24444798-24444801
2012-10-07 16:36:42,630 - DEBUG - Taking top 8 variants by coverage in window 9:24445051-24445052
2012-10-07 16:36:42,657 - DEBUG - Taking top 8 variants by coverage in window 9:24445058-24445067
2012-10-07 16:36:42,808 - DEBUG - Taking top 8 variants by coverage in window 9:24450301-24450302
2012-10-07 16:36:43,032 - DEBUG - Taking top 8 variants by coverage in window 9:24453185-24453186
2012-10-07 16:36:43,060 - DEBUG - Taking top 8 variants by coverage in window 9:24453980-24453981
2012-10-07 16:36:44,122 - DEBUG - Taking top 8 variants by coverage in window 9:24472543-24472544
2012-10-07 16:36:44,240 - DEBUG - Taking top 8 variants by coverage in window 9:24472605-24472606
2012-10-07 16:36:44,287 - DEBUG - Taking top 8 variants by coverage in window 9:24472607-24472608
2012-10-07 16:36:45,963 - DEBUG - Taking top 8 variants by coverage in window 9:24498739-24498754
2012-10-07 16:36:46,027 - DEBUG - Taking top 8 variants by coverage in window 9:24498987-24498988
2012-10-07 16:36:46,326 - DEBUG - Taking top 8 variants by coverage in window 9:24502755-24502756
2012-10-07 16:36:46,619 - DEBUG - Taking top 8 variants by coverage in window 9:24506820-24506826
2012-10-07 16:36:46,672 - DEBUG - Taking top 8 variants by coverage in window 9:24509709-24509713
2012-10-07 16:36:48,771 - DEBUG - Taking top 8 variants by coverage in window 9:24540919-24540920
2012-10-07 16:36:49,274 - DEBUG - Taking top 8 variants by coverage in window 9:24546155-24546161
2012-10-07 16:36:50,677 - DEBUG - Taking top 8 variants by coverage in window 9:24558892-24558893
2012-10-07 16:36:50,695 - DEBUG - Taking top 8 variants by coverage in window 9:24558905-24558906
2012-10-07 16:36:50,854 - DEBUG - Taking top 8 variants by coverage in window 9:24561911-24561912
2012-10-07 16:36:50,971 - DEBUG - Taking top 8 variants by coverage in window 9:24563569-24563570
2012-10-07 16:36:51,008 - DEBUG - Taking top 8 variants by coverage in window 9:24564051-24564055
2012-10-07 16:36:51,040 - DEBUG - Taking top 8 variants by coverage in window 9:24564119-24564120
2012-10-07 16:36:51,054 - DEBUG - Taking top 8 variants by coverage in window 9:24564157-24564158
2012-10-07 16:36:52,512 - DEBUG - Taking top 8 variants by coverage in window 9:24589156-24589157
2012-10-07 16:36:52,722 - DEBUG - Taking top 8 variants by coverage in window 9:24591226-24591227
2012-10-07 16:36:53,013 - DEBUG - Taking top 8 variants by coverage in window 9:24595590-24595595
2012-10-07 16:36:54,265 - DEBUG - Taking top 8 variants by coverage in window 9:24610919-24610921
2012-10-07 16:36:54,360 - DEBUG - Taking top 8 variants by coverage in window 9:24610947-24610948
2012-10-07 16:36:54,807 - DEBUG - Taking top 8 variants by coverage in window 9:24614864-24614865
2012-10-07 16:36:54,818 - DEBUG - Taking top 8 variants by coverage in window 9:24614870-24614871
2012-10-07 16:36:55,017 - DEBUG - Taking top 8 variants by coverage in window 9:24618354-24618355
2012-10-07 16:36:55,324 - DEBUG - Taking top 8 variants by coverage in window 9:24618812-24618813
2012-10-07 16:36:55,429 - DEBUG - Taking top 8 variants by coverage in window 9:24619642-24619644
2012-10-07 16:36:56,259 - DEBUG - Taking top 8 variants by coverage in window 9:24629931-24629933
2012-10-07 16:36:56,746 - DEBUG - Taking top 8 variants by coverage in window 9:24633160-24633164
2012-10-07 16:36:58,208 - DEBUG - Taking top 8 variants by coverage in window 9:24653194-24653195
2012-10-07 16:36:58,228 - DEBUG - Taking top 8 variants by coverage in window 9:24653202-24653205
2012-10-07 16:36:58,291 - DEBUG - Taking top 8 variants by coverage in window 9:24653253-24653255
2012-10-07 16:36:59,948 - DEBUG - Taking top 8 variants by coverage in window 9:24670551-24670552
2012-10-07 16:37:00,490 - DEBUG - Taking top 8 variants by coverage in window 9:24680586-24680587
2012-10-07 16:37:00,708 - DEBUG - Taking top 8 variants by coverage in window 9:24681419-24681421
2012-10-07 16:37:00,743 - DEBUG - Taking top 8 variants by coverage in window 9:24681773-24681774
2012-10-07 16:37:00,812 - DEBUG - Taking top 8 variants by coverage in window 9:24683090-24683091
2012-10-07 16:37:01,091 - DEBUG - Taking top 8 variants by coverage in window 9:24685956-24685957
2012-10-07 16:37:03,046 - DEBUG - Taking top 8 variants by coverage in window 9:24715554-24715560
2012-10-07 16:37:03,212 - DEBUG - Taking top 8 variants by coverage in window 9:24715564-24715572
2012-10-07 16:37:04,030 - DEBUG - Taking top 8 variants by coverage in window 9:24715616-24715624
2012-10-07 16:37:05,712 - DEBUG - Taking top 8 variants by coverage in window 9:24716248-24716249
2012-10-07 16:37:06,910 - DEBUG - Taking top 8 variants by coverage in window 9:24736589-24736591
2012-10-07 16:37:06,943 - DEBUG - Taking top 8 variants by coverage in window 9:24736604-24736605
2012-10-07 16:37:06,966 - DEBUG - Taking top 8 variants by coverage in window 9:24736640-24736641
2012-10-07 16:37:06,992 - DEBUG - Taking top 8 variants by coverage in window 9:24736655-24736668
2012-10-07 16:37:07,187 - DEBUG - Taking top 8 variants by coverage in window 9:24740417-24740418
2012-10-07 16:37:07,775 - DEBUG - Taking top 8 variants by coverage in window 9:24746712-24746713
2012-10-07 16:37:08,197 - DEBUG - Taking top 8 variants by coverage in window 9:24749417-24749420
2012-10-07 16:37:08,212 - DEBUG - Taking top 8 variants by coverage in window 9:24749421-24749422
2012-10-07 16:37:08,417 - DEBUG - Taking top 8 variants by coverage in window 9:24750395-24750396
2012-10-07 16:37:09,404 - DEBUG - Taking top 8 variants by coverage in window 9:24758590-24758600
2012-10-07 16:37:09,798 - DEBUG - Taking top 8 variants by coverage in window 9:24762902-24762903
2012-10-07 16:37:10,041 - DEBUG - Taking top 8 variants by coverage in window 9:24764849-24764850
2012-10-07 16:37:10,749 - DEBUG - Taking top 8 variants by coverage in window 9:24773165-24773172
2012-10-07 16:37:10,767 - DEBUG - Taking top 8 variants by coverage in window 9:24773260-24773261
2012-10-07 16:37:11,482 - DEBUG - Taking top 8 variants by coverage in window 9:24781071-24781073
2012-10-07 16:37:13,651 - DEBUG - Taking top 8 variants by coverage in window 9:24800149-24800150
2012-10-07 16:37:13,921 - DEBUG - Taking top 8 variants by coverage in window 9:24802571-24802572
2012-10-07 16:37:14,162 - DEBUG - Taking top 8 variants by coverage in window 9:24805931-24805932
2012-10-07 16:37:14,464 - DEBUG - Taking top 8 variants by coverage in window 9:24809125-24809126
2012-10-07 16:37:15,445 - DEBUG - Taking top 8 variants by coverage in window 9:24820163-24820164
2012-10-07 16:37:15,843 - DEBUG - Taking top 8 variants by coverage in window 9:24820612-24820616
2012-10-07 16:37:16,161 - DEBUG - Taking top 8 variants by coverage in window 9:24822030-24822034
2012-10-07 16:37:18,280 - DEBUG - Taking top 8 variants by coverage in window 9:24843950-24843951
2012-10-07 16:37:18,296 - DEBUG - Taking top 8 variants by coverage in window 9:24843965-24843966
2012-10-07 16:37:18,789 - DEBUG - Taking top 8 variants by coverage in window 9:24849122-24849123
2012-10-07 16:37:18,832 - DEBUG - Taking top 8 variants by coverage in window 9:24849306-24849307
2012-10-07 16:37:18,982 - DEBUG - Taking top 8 variants by coverage in window 9:24849658-24849659
2012-10-07 16:37:19,239 - DEBUG - Taking top 8 variants by coverage in window 9:24851354-24851355
2012-10-07 16:37:19,764 - DEBUG - Taking top 8 variants by coverage in window 9:24856877-24856878
2012-10-07 16:37:19,997 - DEBUG - Taking top 8 variants by coverage in window 9:24858625-24858626
2012-10-07 16:37:20,045 - DEBUG - Taking top 8 variants by coverage in window 9:24859012-24859013
2012-10-07 16:37:20,337 - DEBUG - Taking top 8 variants by coverage in window 9:24863104-24863105
2012-10-07 16:37:20,406 - DEBUG - Taking top 8 variants by coverage in window 9:24863700-24863710
2012-10-07 16:37:20,449 - DEBUG - Taking top 8 variants by coverage in window 9:24864005-24864007
2012-10-07 16:37:21,134 - DEBUG - Taking top 8 variants by coverage in window 9:24868965-24868966
2012-10-07 16:37:21,469 - DEBUG - Taking top 8 variants by coverage in window 9:24871197-24871211
2012-10-07 16:37:21,792 - DEBUG - Taking top 8 variants by coverage in window 9:24874377-24874379
2012-10-07 16:37:22,035 - DEBUG - Taking top 8 variants by coverage in window 9:24875349-24875350
2012-10-07 16:37:22,379 - DEBUG - Taking top 8 variants by coverage in window 9:24881905-24881906
2012-10-07 16:37:22,565 - DEBUG - Taking top 8 variants by coverage in window 9:24884208-24884212
2012-10-07 16:37:23,215 - DEBUG - Taking top 8 variants by coverage in window 9:24892452-24892453
2012-10-07 16:37:23,975 - DEBUG - Taking top 8 variants by coverage in window 9:24902158-24902159
2012-10-07 16:37:24,020 - DEBUG - Taking top 8 variants by coverage in window 9:24902163-24902165
2012-10-07 16:37:24,445 - DEBUG - Taking top 8 variants by coverage in window 9:24906737-24906738
2012-10-07 16:37:24,460 - DEBUG - Taking top 8 variants by coverage in window 9:24906750-24906751
2012-10-07 16:37:24,689 - DEBUG - Taking top 8 variants by coverage in window 9:24910091-24910093
2012-10-07 16:37:26,651 - DEBUG - Taking top 8 variants by coverage in window 9:24942283-24942286
2012-10-07 16:37:27,847 - DEBUG - Taking top 8 variants by coverage in window 9:24963387-24963393
2012-10-07 16:37:28,315 - DEBUG - Taking top 8 variants by coverage in window 9:24966942-24966943
2012-10-07 16:37:28,556 - DEBUG - Taking top 8 variants by coverage in window 9:24968945-24968948
2012-10-07 16:37:28,673 - DEBUG - Taking top 8 variants by coverage in window 9:24972052-24972053
2012-10-07 16:37:29,479 - DEBUG - Taking top 8 variants by coverage in window 9:24983785-24983786
2012-10-07 16:37:29,622 - DEBUG - Taking top 8 variants by coverage in window 9:24985349-24985351
2012-10-07 16:37:29,665 - DEBUG - Taking top 8 variants by coverage in window 9:24986181-24986182
2012-10-07 16:37:29,861 - DEBUG - Taking top 8 variants by coverage in window 9:24988347-24988348
2012-10-07 16:37:29,876 - DEBUG - Taking top 8 variants by coverage in window 9:24988348-24988349
2012-10-07 16:37:29,992 - DEBUG - Taking top 8 variants by coverage in window 9:24988417-24988418
2012-10-07 16:37:30,041 - DEBUG - Taking top 8 variants by coverage in window 9:24988438-24988439
2012-10-07 16:37:30,049 - DEBUG - Taking top 8 variants by coverage in window 9:24988537-24988538
2012-10-07 16:37:30,748 - DEBUG - Taking top 8 variants by coverage in window 9:24995249-24995250
2012-10-07 16:37:31,051 - DEBUG - Taking top 8 variants by coverage in window 9:24998608-24998609
2012-10-07 16:37:31,984 - INFO - Processing region 9:25000000-26000000
2012-10-07 16:37:32,206 - DEBUG - Read 83921 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 16:37:32,432 - DEBUG - Read 90496 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 16:37:32,678 - DEBUG - Read 106323 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 16:37:32,948 - DEBUG - Read 106111 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 16:37:33,208 - DEBUG - Read 101795 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 16:37:33,442 - DEBUG - Read 96120 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 16:37:33,689 - DEBUG - Read 103566 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 16:37:33,923 - DEBUG - Read 90906 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 16:37:34,142 - DEBUG - Read 86255 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 16:37:34,371 - DEBUG - Read 89423 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 16:37:34,616 - DEBUG - Read 98212 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 16:37:34,830 - DEBUG - Read 86777 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 16:37:35,052 - DEBUG - Read 88047 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 16:37:35,278 - DEBUG - Read 97524 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 16:37:35,530 - DEBUG - Read 105850 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 16:37:35,746 - DEBUG - Read 82185 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 16:37:35,983 - DEBUG - Read 102178 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 16:37:36,227 - DEBUG - Read 98526 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 16:37:36,429 - DEBUG - Read 82152 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 16:37:36,731 - DEBUG - Read 85177 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 16:37:36,835 - DEBUG - Detected 22064 variants in 83921 reads
2012-10-07 16:37:36,997 - DEBUG - Detected 29212 variants in 90496 reads
2012-10-07 16:37:37,212 - DEBUG - Detected 43443 variants in 106323 reads
2012-10-07 16:37:37,479 - DEBUG - Detected 49574 variants in 106111 reads
2012-10-07 16:37:37,766 - DEBUG - Detected 54995 variants in 101795 reads
2012-10-07 16:37:38,095 - DEBUG - Detected 60297 variants in 96120 reads
2012-10-07 16:37:38,443 - DEBUG - Detected 72387 variants in 103566 reads
2012-10-07 16:37:38,837 - DEBUG - Detected 78658 variants in 90906 reads
2012-10-07 16:37:39,278 - DEBUG - Detected 83971 variants in 86255 reads
2012-10-07 16:37:39,753 - DEBUG - Detected 88447 variants in 89423 reads
2012-10-07 16:37:40,253 - DEBUG - Detected 93331 variants in 98212 reads
2012-10-07 16:37:40,764 - DEBUG - Detected 96705 variants in 86777 reads
2012-10-07 16:37:41,347 - DEBUG - Detected 101027 variants in 88047 reads
2012-10-07 16:37:41,916 - DEBUG - Detected 105252 variants in 97524 reads
2012-10-07 16:37:42,517 - DEBUG - Detected 111508 variants in 105850 reads
2012-10-07 16:37:43,112 - DEBUG - Detected 115800 variants in 82185 reads
2012-10-07 16:37:43,714 - DEBUG - Detected 119052 variants in 102178 reads
2012-10-07 16:37:44,385 - DEBUG - Detected 122456 variants in 98526 reads
2012-10-07 16:37:44,999 - DEBUG - Detected 126140 variants in 82152 reads
2012-10-07 16:37:45,633 - DEBUG - Detected 130039 variants in 85177 reads
2012-10-07 16:37:46,868 - DEBUG - Taking top 8 variants by coverage in window 9:25002240-25002242
2012-10-07 16:37:47,278 - DEBUG - Taking top 8 variants by coverage in window 9:25007484-25007485
2012-10-07 16:37:47,780 - DEBUG - Taking top 8 variants by coverage in window 9:25017786-25017787
2012-10-07 16:37:48,156 - DEBUG - Taking top 8 variants by coverage in window 9:25023092-25023093
2012-10-07 16:37:48,789 - DEBUG - Taking top 8 variants by coverage in window 9:25034088-25034089
2012-10-07 16:37:48,997 - DEBUG - Taking top 8 variants by coverage in window 9:25037789-25037790
2012-10-07 16:37:49,160 - DEBUG - Taking top 8 variants by coverage in window 9:25049185-25049186
2012-10-07 16:37:49,166 - DEBUG - Taking top 8 variants by coverage in window 9:25049187-25049189
2012-10-07 16:37:49,380 - DEBUG - Taking top 8 variants by coverage in window 9:25053823-25053824
2012-10-07 16:37:49,993 - DEBUG - Taking top 8 variants by coverage in window 9:25067232-25067233
2012-10-07 16:37:50,154 - DEBUG - Taking top 8 variants by coverage in window 9:25068857-25068858
2012-10-07 16:37:50,189 - DEBUG - Taking top 8 variants by coverage in window 9:25068873-25068877
2012-10-07 16:37:50,546 - DEBUG - Taking top 8 variants by coverage in window 9:25077459-25077467
2012-10-07 16:37:50,677 - DEBUG - Taking top 8 variants by coverage in window 9:25079125-25079126
2012-10-07 16:37:51,201 - DEBUG - Taking top 8 variants by coverage in window 9:25089933-25089934
2012-10-07 16:37:51,931 - DEBUG - Taking top 8 variants by coverage in window 9:25104837-25104841
2012-10-07 16:37:53,255 - DEBUG - Taking top 8 variants by coverage in window 9:25125791-25125792
2012-10-07 16:37:53,461 - DEBUG - Taking top 8 variants by coverage in window 9:25127632-25127633
2012-10-07 16:37:53,736 - DEBUG - Taking top 8 variants by coverage in window 9:25131013-25131014
2012-10-07 16:37:54,831 - DEBUG - Taking top 8 variants by coverage in window 9:25144797-25144801
2012-10-07 16:37:54,939 - DEBUG - Taking top 8 variants by coverage in window 9:25146046-25146047
2012-10-07 16:37:54,952 - DEBUG - Taking top 8 variants by coverage in window 9:25146047-25146048
2012-10-07 16:37:55,255 - DEBUG - Taking top 8 variants by coverage in window 9:25148231-25148232
2012-10-07 16:37:55,525 - DEBUG - Taking top 8 variants by coverage in window 9:25149227-25149228
2012-10-07 16:37:57,198 - DEBUG - Taking top 8 variants by coverage in window 9:25172314-25172318
2012-10-07 16:37:57,253 - DEBUG - Taking top 8 variants by coverage in window 9:25172927-25172928
2012-10-07 16:37:57,755 - DEBUG - Taking top 8 variants by coverage in window 9:25177298-25177300
2012-10-07 16:37:58,148 - DEBUG - Taking top 8 variants by coverage in window 9:25182930-25182931
2012-10-07 16:37:58,158 - DEBUG - Taking top 8 variants by coverage in window 9:25182946-25182948
2012-10-07 16:37:59,037 - DEBUG - Taking top 8 variants by coverage in window 9:25196509-25196510
2012-10-07 16:37:59,045 - DEBUG - Taking top 8 variants by coverage in window 9:25196520-25196521
2012-10-07 16:37:59,192 - DEBUG - Taking top 8 variants by coverage in window 9:25197618-25197619
2012-10-07 16:37:59,881 - DEBUG - Taking top 8 variants by coverage in window 9:25208016-25208019
2012-10-07 16:38:00,039 - DEBUG - Taking top 8 variants by coverage in window 9:25208658-25208659
2012-10-07 16:38:01,290 - DEBUG - Taking top 8 variants by coverage in window 9:25223267-25223268
2012-10-07 16:38:01,325 - DEBUG - Taking top 8 variants by coverage in window 9:25223303-25223304
2012-10-07 16:38:01,455 - DEBUG - Taking top 8 variants by coverage in window 9:25223399-25223400
2012-10-07 16:38:01,704 - DEBUG - Taking top 8 variants by coverage in window 9:25226810-25226811
2012-10-07 16:38:01,934 - DEBUG - Taking top 8 variants by coverage in window 9:25234086-25234087
2012-10-07 16:38:02,038 - DEBUG - Taking top 8 variants by coverage in window 9:25234888-25234889
2012-10-07 16:38:03,370 - DEBUG - Taking top 8 variants by coverage in window 9:25251443-25251444
2012-10-07 16:38:03,684 - DEBUG - Taking top 8 variants by coverage in window 9:25254076-25254077
2012-10-07 16:38:03,703 - DEBUG - Taking top 8 variants by coverage in window 9:25254082-25254083
2012-10-07 16:38:03,875 - DEBUG - Taking top 8 variants by coverage in window 9:25255555-25255565
2012-10-07 16:38:04,337 - DEBUG - Taking top 8 variants by coverage in window 9:25259928-25259929
2012-10-07 16:38:04,360 - DEBUG - Taking top 8 variants by coverage in window 9:25259943-25259944
2012-10-07 16:38:04,463 - DEBUG - Taking top 8 variants by coverage in window 9:25260637-25260638
2012-10-07 16:38:05,143 - DEBUG - Taking top 8 variants by coverage in window 9:25271680-25271681
2012-10-07 16:38:05,207 - DEBUG - Taking top 8 variants by coverage in window 9:25272148-25272149
2012-10-07 16:38:05,225 - DEBUG - Taking top 8 variants by coverage in window 9:25272163-25272164
2012-10-07 16:38:05,361 - DEBUG - Taking top 8 variants by coverage in window 9:25274046-25274052
2012-10-07 16:38:05,601 - DEBUG - Taking top 8 variants by coverage in window 9:25276504-25276505
2012-10-07 16:38:05,615 - DEBUG - Taking top 8 variants by coverage in window 9:25276512-25276513
2012-10-07 16:38:05,797 - DEBUG - Taking top 8 variants by coverage in window 9:25278380-25278389
2012-10-07 16:38:06,383 - DEBUG - Taking top 8 variants by coverage in window 9:25285318-25285319
2012-10-07 16:38:06,614 - DEBUG - Taking top 8 variants by coverage in window 9:25287504-25287505
2012-10-07 16:38:07,633 - DEBUG - Taking top 8 variants by coverage in window 9:25305334-25305337
2012-10-07 16:38:07,764 - DEBUG - Taking top 8 variants by coverage in window 9:25306755-25306756
2012-10-07 16:38:08,724 - DEBUG - Taking top 8 variants by coverage in window 9:25314398-25314399
2012-10-07 16:38:10,020 - DEBUG - Taking top 8 variants by coverage in window 9:25325534-25325535
2012-10-07 16:38:10,036 - DEBUG - Taking top 8 variants by coverage in window 9:25325543-25325544
2012-10-07 16:38:11,837 - DEBUG - Taking top 8 variants by coverage in window 9:25351023-25351024
2012-10-07 16:38:12,077 - DEBUG - Taking top 8 variants by coverage in window 9:25354415-25354416
2012-10-07 16:38:12,219 - DEBUG - Taking top 8 variants by coverage in window 9:25354444-25354445
2012-10-07 16:38:12,730 - DEBUG - Taking top 8 variants by coverage in window 9:25354765-25354768
2012-10-07 16:38:13,156 - DEBUG - Taking top 8 variants by coverage in window 9:25357729-25357733
2012-10-07 16:38:13,570 - DEBUG - Taking top 8 variants by coverage in window 9:25360560-25360561
2012-10-07 16:38:15,192 - DEBUG - Taking top 8 variants by coverage in window 9:25380505-25380518
2012-10-07 16:38:15,358 - DEBUG - Taking top 8 variants by coverage in window 9:25381443-25381444
2012-10-07 16:38:15,517 - DEBUG - Taking top 8 variants by coverage in window 9:25382809-25382810
2012-10-07 16:38:15,568 - DEBUG - Taking top 8 variants by coverage in window 9:25382816-25382817
2012-10-07 16:38:15,865 - DEBUG - Taking top 8 variants by coverage in window 9:25386310-25386311
2012-10-07 16:38:16,363 - DEBUG - Taking top 8 variants by coverage in window 9:25390120-25390126
2012-10-07 16:38:16,794 - DEBUG - Taking top 8 variants by coverage in window 9:25391175-25391176
2012-10-07 16:38:16,814 - DEBUG - Taking top 8 variants by coverage in window 9:25391177-25391178
2012-10-07 16:38:16,845 - DEBUG - Taking top 8 variants by coverage in window 9:25391193-25391194
2012-10-07 16:38:17,044 - DEBUG - Taking top 8 variants by coverage in window 9:25392700-25392714
2012-10-07 16:38:17,086 - DEBUG - Taking top 8 variants by coverage in window 9:25392724-25392725
2012-10-07 16:38:17,405 - DEBUG - Taking top 8 variants by coverage in window 9:25394767-25394774
2012-10-07 16:38:18,048 - DEBUG - Taking top 8 variants by coverage in window 9:25400828-25400830
2012-10-07 16:38:18,264 - DEBUG - Taking top 8 variants by coverage in window 9:25402415-25402416
2012-10-07 16:38:18,561 - DEBUG - Taking top 8 variants by coverage in window 9:25410670-25410672
2012-10-07 16:38:19,055 - DEBUG - Taking top 8 variants by coverage in window 9:25417846-25417847
2012-10-07 16:38:19,108 - DEBUG - Taking top 8 variants by coverage in window 9:25418591-25418592
2012-10-07 16:38:19,462 - DEBUG - Taking top 8 variants by coverage in window 9:25422988-25422989
2012-10-07 16:38:19,770 - DEBUG - Taking top 8 variants by coverage in window 9:25426742-25426743
2012-10-07 16:38:19,924 - DEBUG - Taking top 8 variants by coverage in window 9:25429060-25429061
2012-10-07 16:38:19,941 - DEBUG - Taking top 8 variants by coverage in window 9:25429075-25429076
2012-10-07 16:38:20,164 - DEBUG - Taking top 8 variants by coverage in window 9:25432044-25432045
2012-10-07 16:38:20,183 - DEBUG - Taking top 8 variants by coverage in window 9:25432054-25432059
2012-10-07 16:38:20,840 - DEBUG - Taking top 8 variants by coverage in window 9:25437486-25437487
2012-10-07 16:38:23,238 - DEBUG - Taking top 8 variants by coverage in window 9:25461991-25461992
2012-10-07 16:38:24,197 - DEBUG - Taking top 8 variants by coverage in window 9:25471061-25471063
2012-10-07 16:38:24,210 - DEBUG - Taking top 8 variants by coverage in window 9:25471271-25471272
2012-10-07 16:38:24,408 - DEBUG - Taking top 8 variants by coverage in window 9:25473561-25473562
2012-10-07 16:38:24,474 - DEBUG - Taking top 8 variants by coverage in window 9:25473612-25473614
2012-10-07 16:38:24,571 - DEBUG - Taking top 8 variants by coverage in window 9:25474649-25474650
2012-10-07 16:38:25,031 - DEBUG - Taking top 8 variants by coverage in window 9:25481393-25481394
2012-10-07 16:38:25,535 - DEBUG - Taking top 8 variants by coverage in window 9:25486105-25486106
2012-10-07 16:38:25,606 - DEBUG - Taking top 8 variants by coverage in window 9:25486520-25486521
2012-10-07 16:38:25,976 - DEBUG - Taking top 8 variants by coverage in window 9:25493436-25493437
2012-10-07 16:38:26,034 - DEBUG - Taking top 8 variants by coverage in window 9:25493566-25493567
2012-10-07 16:38:27,235 - DEBUG - Taking top 8 variants by coverage in window 9:25510438-25510439
2012-10-07 16:38:27,445 - DEBUG - Taking top 8 variants by coverage in window 9:25511461-25511464
2012-10-07 16:38:27,487 - DEBUG - Taking top 8 variants by coverage in window 9:25511468-25511469
2012-10-07 16:38:27,774 - DEBUG - Taking top 8 variants by coverage in window 9:25513617-25513618
2012-10-07 16:38:27,899 - DEBUG - Taking top 8 variants by coverage in window 9:25513738-25513740
2012-10-07 16:38:28,396 - DEBUG - Taking top 8 variants by coverage in window 9:25516634-25516635
2012-10-07 16:38:28,410 - DEBUG - Taking top 8 variants by coverage in window 9:25516635-25516636
2012-10-07 16:38:28,461 - DEBUG - Taking top 8 variants by coverage in window 9:25516661-25516665
2012-10-07 16:38:28,565 - DEBUG - Taking top 8 variants by coverage in window 9:25517720-25517721
2012-10-07 16:38:29,461 - DEBUG - Taking top 8 variants by coverage in window 9:25526705-25526707
2012-10-07 16:38:29,518 - DEBUG - Taking top 8 variants by coverage in window 9:25527074-25527075
2012-10-07 16:38:30,306 - DEBUG - Taking top 8 variants by coverage in window 9:25536413-25536419
2012-10-07 16:38:30,711 - DEBUG - Taking top 8 variants by coverage in window 9:25541059-25541060
2012-10-07 16:38:31,458 - DEBUG - Taking top 8 variants by coverage in window 9:25566434-25566435
2012-10-07 16:38:31,681 - DEBUG - Taking top 8 variants by coverage in window 9:25568049-25568052
2012-10-07 16:38:31,695 - DEBUG - Taking top 8 variants by coverage in window 9:25568119-25568120
2012-10-07 16:38:31,941 - DEBUG - Taking top 8 variants by coverage in window 9:25572293-25572294
2012-10-07 16:38:32,100 - DEBUG - Taking top 8 variants by coverage in window 9:25573472-25573475
2012-10-07 16:38:33,040 - DEBUG - Taking top 8 variants by coverage in window 9:25583600-25583601
2012-10-07 16:38:33,138 - DEBUG - Taking top 8 variants by coverage in window 9:25588195-25588196
2012-10-07 16:38:33,273 - DEBUG - Taking top 8 variants by coverage in window 9:25588632-25588633
2012-10-07 16:38:34,322 - DEBUG - Taking top 8 variants by coverage in window 9:25606994-25606995
2012-10-07 16:38:35,398 - DEBUG - Taking top 8 variants by coverage in window 9:25620089-25620092
2012-10-07 16:38:35,825 - DEBUG - Taking top 8 variants by coverage in window 9:25620096-25620097
2012-10-07 16:38:35,982 - DEBUG - Taking top 8 variants by coverage in window 9:25621157-25621177
2012-10-07 16:38:36,595 - DEBUG - Taking top 8 variants by coverage in window 9:25634340-25634341
2012-10-07 16:38:37,136 - DEBUG - Taking top 8 variants by coverage in window 9:25641750-25641751
2012-10-07 16:38:37,653 - DEBUG - Taking top 8 variants by coverage in window 9:25647904-25647905
2012-10-07 16:38:37,991 - DEBUG - Taking top 8 variants by coverage in window 9:25656332-25656333
2012-10-07 16:38:38,623 - DEBUG - Taking top 8 variants by coverage in window 9:25661804-25661805
2012-10-07 16:38:38,635 - DEBUG - Taking top 8 variants by coverage in window 9:25661812-25661813
2012-10-07 16:38:39,233 - DEBUG - Taking top 8 variants by coverage in window 9:25675840-25675848
2012-10-07 16:38:39,474 - DEBUG - Taking top 8 variants by coverage in window 9:25676503-25676507
2012-10-07 16:38:39,637 - DEBUG - Taking top 8 variants by coverage in window 9:25677656-25677657
2012-10-07 16:38:39,846 - DEBUG - Taking top 8 variants by coverage in window 9:25679264-25679265
2012-10-07 16:38:39,881 - DEBUG - Taking top 8 variants by coverage in window 9:25680432-25680433
2012-10-07 16:38:39,959 - DEBUG - Taking top 8 variants by coverage in window 9:25681026-25681028
2012-10-07 16:38:40,256 - DEBUG - Taking top 8 variants by coverage in window 9:25685707-25685716
2012-10-07 16:38:40,754 - DEBUG - Taking top 8 variants by coverage in window 9:25694092-25694093
2012-10-07 16:38:40,794 - DEBUG - Taking top 8 variants by coverage in window 9:25694310-25694311
2012-10-07 16:38:41,496 - DEBUG - Taking top 8 variants by coverage in window 9:25707539-25707540
2012-10-07 16:38:41,981 - DEBUG - Taking top 8 variants by coverage in window 9:25714487-25714488
2012-10-07 16:38:41,997 - DEBUG - Taking top 8 variants by coverage in window 9:25714490-25714491
2012-10-07 16:38:43,787 - DEBUG - Taking top 8 variants by coverage in window 9:25741746-25741747
2012-10-07 16:38:44,023 - DEBUG - Taking top 8 variants by coverage in window 9:25745814-25745815
2012-10-07 16:38:44,853 - DEBUG - Taking top 8 variants by coverage in window 9:25754034-25754035
2012-10-07 16:38:46,069 - DEBUG - Taking top 8 variants by coverage in window 9:25766652-25766653
2012-10-07 16:38:46,273 - DEBUG - Taking top 8 variants by coverage in window 9:25769200-25769201
2012-10-07 16:38:46,289 - DEBUG - Taking top 8 variants by coverage in window 9:25769206-25769208
2012-10-07 16:38:46,561 - DEBUG - Taking top 8 variants by coverage in window 9:25774064-25774067
2012-10-07 16:38:47,149 - DEBUG - Taking top 8 variants by coverage in window 9:25791601-25791602
2012-10-07 16:38:48,175 - DEBUG - Taking top 8 variants by coverage in window 9:25810930-25810931
2012-10-07 16:38:48,290 - DEBUG - Taking top 8 variants by coverage in window 9:25811451-25811455
2012-10-07 16:38:48,382 - DEBUG - Taking top 8 variants by coverage in window 9:25811477-25811479
2012-10-07 16:38:48,747 - DEBUG - Taking top 8 variants by coverage in window 9:25811832-25811840
2012-10-07 16:38:49,622 - DEBUG - Taking top 8 variants by coverage in window 9:25820689-25820690
2012-10-07 16:38:49,781 - DEBUG - Taking top 8 variants by coverage in window 9:25821908-25821909
2012-10-07 16:38:50,796 - DEBUG - Taking top 8 variants by coverage in window 9:25836593-25836600
2012-10-07 16:38:51,440 - DEBUG - Taking top 8 variants by coverage in window 9:25854495-25854496
2012-10-07 16:38:52,016 - DEBUG - Taking top 8 variants by coverage in window 9:25867438-25867443
2012-10-07 16:38:52,197 - DEBUG - Taking top 8 variants by coverage in window 9:25869547-25869548
2012-10-07 16:38:52,748 - DEBUG - Taking top 8 variants by coverage in window 9:25877445-25877447
2012-10-07 16:38:53,285 - DEBUG - Taking top 8 variants by coverage in window 9:25887642-25887643
2012-10-07 16:38:53,317 - DEBUG - Taking top 8 variants by coverage in window 9:25887688-25887689
2012-10-07 16:38:53,556 - DEBUG - Taking top 8 variants by coverage in window 9:25892903-25892905
2012-10-07 16:38:53,653 - DEBUG - Taking top 8 variants by coverage in window 9:25893134-25893135
2012-10-07 16:38:53,764 - DEBUG - Taking top 8 variants by coverage in window 9:25894572-25894588
2012-10-07 16:38:54,216 - DEBUG - Taking top 8 variants by coverage in window 9:25899558-25899559
2012-10-07 16:38:54,379 - DEBUG - Taking top 8 variants by coverage in window 9:25902885-25902886
2012-10-07 16:38:54,523 - DEBUG - Taking top 8 variants by coverage in window 9:25910948-25910949
2012-10-07 16:38:54,963 - DEBUG - Taking top 8 variants by coverage in window 9:25919808-25919819
2012-10-07 16:38:55,050 - DEBUG - Taking top 8 variants by coverage in window 9:25920850-25920866
2012-10-07 16:38:55,377 - DEBUG - Taking top 8 variants by coverage in window 9:25923874-25923875
2012-10-07 16:38:55,821 - DEBUG - Taking top 8 variants by coverage in window 9:25929291-25929292
2012-10-07 16:38:56,043 - DEBUG - Taking top 8 variants by coverage in window 9:25933129-25933140
2012-10-07 16:38:56,145 - DEBUG - Taking top 8 variants by coverage in window 9:25933626-25933627
2012-10-07 16:38:56,186 - DEBUG - Taking top 8 variants by coverage in window 9:25933637-25933638
2012-10-07 16:38:56,667 - DEBUG - Taking top 8 variants by coverage in window 9:25943619-25943620
2012-10-07 16:38:57,288 - DEBUG - Taking top 8 variants by coverage in window 9:25952406-25952407
2012-10-07 16:38:57,455 - DEBUG - Taking top 8 variants by coverage in window 9:25955056-25955065
2012-10-07 16:38:57,467 - DEBUG - Taking top 8 variants by coverage in window 9:25955072-25955073
2012-10-07 16:38:57,855 - DEBUG - Taking top 8 variants by coverage in window 9:25962739-25962742
2012-10-07 16:38:57,923 - DEBUG - Taking top 8 variants by coverage in window 9:25963421-25963422
2012-10-07 16:38:57,960 - DEBUG - Taking top 8 variants by coverage in window 9:25963759-25963766
2012-10-07 16:38:58,702 - DEBUG - Taking top 8 variants by coverage in window 9:25987076-25987080
2012-10-07 16:38:58,789 - DEBUG - Taking top 8 variants by coverage in window 9:25987097-25987099
2012-10-07 16:39:00,524 - DEBUG - Read 95205 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 16:39:00,763 - DEBUG - Read 102700 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 16:39:01,026 - DEBUG - Read 120218 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 16:39:01,316 - DEBUG - Read 120684 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 16:39:01,595 - DEBUG - Read 115989 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 16:39:01,842 - DEBUG - Read 108414 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 16:39:02,099 - DEBUG - Read 114797 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 16:39:02,350 - DEBUG - Read 103315 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 16:39:02,702 - DEBUG - Read 98825 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 16:39:02,963 - DEBUG - Read 100389 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 16:39:03,255 - DEBUG - Read 111892 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 16:39:03,493 - DEBUG - Read 99195 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 16:39:03,756 - DEBUG - Read 101720 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 16:39:03,998 - DEBUG - Read 110943 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 16:39:04,289 - DEBUG - Read 120129 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 16:39:04,522 - DEBUG - Read 92850 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 16:39:04,783 - DEBUG - Read 114890 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 16:39:05,041 - DEBUG - Read 111126 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 16:39:05,259 - DEBUG - Read 94041 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 16:39:05,516 - DEBUG - Read 95138 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 16:39:05,622 - DEBUG - Detected 21474 variants in 95205 reads
2012-10-07 16:39:05,785 - DEBUG - Detected 31060 variants in 102700 reads
2012-10-07 16:39:06,034 - DEBUG - Detected 42135 variants in 120218 reads
2012-10-07 16:39:06,297 - DEBUG - Detected 50149 variants in 120684 reads
2012-10-07 16:39:06,595 - DEBUG - Detected 56715 variants in 115989 reads
2012-10-07 16:39:06,915 - DEBUG - Detected 62625 variants in 108414 reads
2012-10-07 16:39:07,276 - DEBUG - Detected 75665 variants in 114797 reads
2012-10-07 16:39:07,691 - DEBUG - Detected 80768 variants in 103315 reads
2012-10-07 16:39:08,165 - DEBUG - Detected 86423 variants in 98825 reads
2012-10-07 16:39:08,632 - DEBUG - Detected 90958 variants in 100389 reads
2012-10-07 16:39:09,127 - DEBUG - Detected 95497 variants in 111892 reads
2012-10-07 16:39:09,625 - DEBUG - Detected 99081 variants in 99195 reads
2012-10-07 16:39:10,147 - DEBUG - Detected 103990 variants in 101720 reads
2012-10-07 16:39:10,700 - DEBUG - Detected 108871 variants in 110943 reads
2012-10-07 16:39:11,289 - DEBUG - Detected 115888 variants in 120129 reads
2012-10-07 16:39:11,940 - DEBUG - Detected 119903 variants in 92850 reads
2012-10-07 16:39:12,579 - DEBUG - Detected 123669 variants in 114890 reads
2012-10-07 16:39:13,233 - DEBUG - Detected 127772 variants in 111126 reads
2012-10-07 16:39:13,888 - DEBUG - Detected 131785 variants in 94041 reads
2012-10-07 16:39:14,555 - DEBUG - Detected 136143 variants in 95138 reads
2012-10-07 16:39:16,795 - DEBUG - Taking top 8 variants by coverage in window 9:26018577-26018579
2012-10-07 16:39:16,834 - DEBUG - Taking top 8 variants by coverage in window 9:26018596-26018597
2012-10-07 16:39:18,310 - DEBUG - Taking top 8 variants by coverage in window 9:26041331-26041338
2012-10-07 16:39:19,689 - DEBUG - Taking top 8 variants by coverage in window 9:26056284-26056288
2012-10-07 16:39:21,504 - DEBUG - Taking top 8 variants by coverage in window 9:26070107-26070108
2012-10-07 16:39:22,118 - DEBUG - Taking top 8 variants by coverage in window 9:26080132-26080141
2012-10-07 16:39:22,159 - DEBUG - Taking top 8 variants by coverage in window 9:26080257-26080258
2012-10-07 16:39:22,582 - DEBUG - Taking top 8 variants by coverage in window 9:26086565-26086577
2012-10-07 16:39:22,649 - DEBUG - Taking top 8 variants by coverage in window 9:26086939-26086942
2012-10-07 16:39:22,834 - DEBUG - Taking top 8 variants by coverage in window 9:26088928-26088935
2012-10-07 16:39:23,345 - DEBUG - Taking top 8 variants by coverage in window 9:26094967-26094968
2012-10-07 16:39:24,148 - DEBUG - Taking top 8 variants by coverage in window 9:26102079-26102080
2012-10-07 16:39:24,579 - DEBUG - Taking top 8 variants by coverage in window 9:26104903-26104908
2012-10-07 16:39:25,727 - DEBUG - Taking top 8 variants by coverage in window 9:26115155-26115168
2012-10-07 16:39:26,411 - DEBUG - Taking top 8 variants by coverage in window 9:26122802-26122803
2012-10-07 16:39:27,147 - DEBUG - Taking top 8 variants by coverage in window 9:26134518-26134519
2012-10-07 16:39:28,759 - DEBUG - Taking top 8 variants by coverage in window 9:26159274-26159275
2012-10-07 16:39:28,829 - DEBUG - Taking top 8 variants by coverage in window 9:26160224-26160225
2012-10-07 16:39:29,192 - DEBUG - Taking top 8 variants by coverage in window 9:26163165-26163167
2012-10-07 16:39:29,291 - DEBUG - Taking top 8 variants by coverage in window 9:26163822-26163823
2012-10-07 16:39:30,483 - DEBUG - Taking top 8 variants by coverage in window 9:26175629-26175636
2012-10-07 16:39:31,758 - DEBUG - Taking top 8 variants by coverage in window 9:26190532-26190533
2012-10-07 16:39:31,997 - DEBUG - Taking top 8 variants by coverage in window 9:26193189-26193190
2012-10-07 16:39:32,286 - DEBUG - Taking top 8 variants by coverage in window 9:26195680-26195687
2012-10-07 16:39:33,330 - DEBUG - Taking top 8 variants by coverage in window 9:26218953-26218954
2012-10-07 16:39:35,202 - DEBUG - Taking top 8 variants by coverage in window 9:26242704-26242705
2012-10-07 16:39:35,214 - DEBUG - Taking top 8 variants by coverage in window 9:26242715-26242716
2012-10-07 16:39:35,605 - DEBUG - Taking top 8 variants by coverage in window 9:26246989-26246990
2012-10-07 16:39:35,766 - DEBUG - Taking top 8 variants by coverage in window 9:26247448-26247449
2012-10-07 16:39:36,339 - DEBUG - Taking top 8 variants by coverage in window 9:26254783-26254784
2012-10-07 16:39:36,413 - DEBUG - Taking top 8 variants by coverage in window 9:26255308-26255309
2012-10-07 16:39:36,748 - DEBUG - Taking top 8 variants by coverage in window 9:26257660-26257661
2012-10-07 16:39:36,919 - DEBUG - Taking top 8 variants by coverage in window 9:26259256-26259258
2012-10-07 16:39:36,934 - DEBUG - Taking top 8 variants by coverage in window 9:26259259-26259265
2012-10-07 16:39:37,243 - DEBUG - Taking top 8 variants by coverage in window 9:26262009-26262016
2012-10-07 16:39:37,678 - DEBUG - Taking top 8 variants by coverage in window 9:26267798-26267811
2012-10-07 16:39:37,826 - DEBUG - Taking top 8 variants by coverage in window 9:26269876-26269877
2012-10-07 16:39:38,372 - DEBUG - Taking top 8 variants by coverage in window 9:26275058-26275064
2012-10-07 16:39:38,666 - DEBUG - Taking top 8 variants by coverage in window 9:26276603-26276604
2012-10-07 16:39:38,796 - DEBUG - Taking top 8 variants by coverage in window 9:26276715-26276716
2012-10-07 16:39:39,025 - DEBUG - Taking top 8 variants by coverage in window 9:26278094-26278095
2012-10-07 16:39:39,041 - DEBUG - Taking top 8 variants by coverage in window 9:26278100-26278101
2012-10-07 16:39:39,437 - DEBUG - Taking top 8 variants by coverage in window 9:26283466-26283467
2012-10-07 16:39:39,449 - DEBUG - Taking top 8 variants by coverage in window 9:26283477-26283478
2012-10-07 16:39:39,931 - DEBUG - Taking top 8 variants by coverage in window 9:26288586-26288592
2012-10-07 16:39:40,108 - DEBUG - Taking top 8 variants by coverage in window 9:26289126-26289127
2012-10-07 16:39:40,728 - DEBUG - Taking top 8 variants by coverage in window 9:26296900-26296901
2012-10-07 16:39:41,144 - DEBUG - Taking top 8 variants by coverage in window 9:26304149-26304150
2012-10-07 16:39:41,711 - DEBUG - Taking top 8 variants by coverage in window 9:26310364-26310365
2012-10-07 16:39:41,893 - DEBUG - Taking top 8 variants by coverage in window 9:26312464-26312465
2012-10-07 16:39:43,008 - DEBUG - Taking top 8 variants by coverage in window 9:26328653-26328664
2012-10-07 16:39:44,657 - DEBUG - Taking top 8 variants by coverage in window 9:26350621-26350623
2012-10-07 16:39:45,007 - DEBUG - Taking top 8 variants by coverage in window 9:26353317-26353320
2012-10-07 16:39:45,018 - DEBUG - Taking top 8 variants by coverage in window 9:26353327-26353328
2012-10-07 16:39:45,297 - DEBUG - Taking top 8 variants by coverage in window 9:26356643-26356644
2012-10-07 16:39:46,185 - DEBUG - Taking top 8 variants by coverage in window 9:26363651-26363652
2012-10-07 16:39:46,912 - DEBUG - Taking top 8 variants by coverage in window 9:26371326-26371327
2012-10-07 16:39:47,299 - DEBUG - Taking top 8 variants by coverage in window 9:26376143-26376144
2012-10-07 16:39:47,601 - DEBUG - Taking top 8 variants by coverage in window 9:26381155-26381156
2012-10-07 16:39:48,318 - DEBUG - Taking top 8 variants by coverage in window 9:26389672-26389673
2012-10-07 16:39:48,483 - DEBUG - Taking top 8 variants by coverage in window 9:26392836-26392837
2012-10-07 16:39:49,376 - DEBUG - Taking top 8 variants by coverage in window 9:26412702-26412703
2012-10-07 16:39:49,939 - DEBUG - Taking top 8 variants by coverage in window 9:26418155-26418156
2012-10-07 16:39:50,049 - DEBUG - Taking top 8 variants by coverage in window 9:26418225-26418226
2012-10-07 16:39:50,343 - DEBUG - Taking top 8 variants by coverage in window 9:26423028-26423029
2012-10-07 16:39:50,391 - DEBUG - Taking top 8 variants by coverage in window 9:26423167-26423168
2012-10-07 16:39:50,408 - DEBUG - Taking top 8 variants by coverage in window 9:26423190-26423191
2012-10-07 16:39:51,024 - DEBUG - Taking top 8 variants by coverage in window 9:26431924-26431925
2012-10-07 16:39:51,168 - DEBUG - Taking top 8 variants by coverage in window 9:26433638-26433639
2012-10-07 16:39:52,378 - DEBUG - Taking top 8 variants by coverage in window 9:26446243-26446244
2012-10-07 16:39:54,370 - DEBUG - Taking top 8 variants by coverage in window 9:26470127-26470128
2012-10-07 16:39:54,662 - DEBUG - Taking top 8 variants by coverage in window 9:26474498-26474499
2012-10-07 16:39:54,676 - DEBUG - Taking top 8 variants by coverage in window 9:26474514-26474515
2012-10-07 16:39:54,746 - DEBUG - Taking top 8 variants by coverage in window 9:26475942-26475943
2012-10-07 16:39:54,783 - DEBUG - Taking top 8 variants by coverage in window 9:26476115-26476116
2012-10-07 16:39:55,011 - DEBUG - Taking top 8 variants by coverage in window 9:26476749-26476750
2012-10-07 16:39:55,052 - DEBUG - Taking top 8 variants by coverage in window 9:26476764-26476765
2012-10-07 16:39:55,661 - DEBUG - Taking top 8 variants by coverage in window 9:26484817-26484818
2012-10-07 16:39:55,685 - DEBUG - Taking top 8 variants by coverage in window 9:26484843-26484847
2012-10-07 16:39:55,828 - DEBUG - Taking top 8 variants by coverage in window 9:26485702-26485703
2012-10-07 16:39:56,121 - DEBUG - Taking top 8 variants by coverage in window 9:26487666-26487668
2012-10-07 16:39:56,639 - DEBUG - Taking top 8 variants by coverage in window 9:26492423-26492424
2012-10-07 16:39:56,851 - DEBUG - Taking top 8 variants by coverage in window 9:26495948-26495949
2012-10-07 16:39:57,425 - DEBUG - Taking top 8 variants by coverage in window 9:26505291-26505292
2012-10-07 16:39:57,601 - DEBUG - Taking top 8 variants by coverage in window 9:26506692-26506693
2012-10-07 16:39:57,723 - DEBUG - Taking top 8 variants by coverage in window 9:26507246-26507247
2012-10-07 16:39:57,896 - DEBUG - Taking top 8 variants by coverage in window 9:26508473-26508474
2012-10-07 16:39:57,957 - DEBUG - Taking top 8 variants by coverage in window 9:26515562-26515563
2012-10-07 16:39:59,030 - DEBUG - Taking top 8 variants by coverage in window 9:26526758-26526759
2012-10-07 16:39:59,611 - DEBUG - Taking top 8 variants by coverage in window 9:26536159-26536160
2012-10-07 16:39:59,923 - DEBUG - Taking top 8 variants by coverage in window 9:26541861-26541862
2012-10-07 16:40:00,309 - DEBUG - Taking top 8 variants by coverage in window 9:26546838-26546843
2012-10-07 16:40:00,820 - DEBUG - Taking top 8 variants by coverage in window 9:26550196-26550199
2012-10-07 16:40:01,067 - DEBUG - Taking top 8 variants by coverage in window 9:26550851-26550856
2012-10-07 16:40:02,398 - DEBUG - Taking top 8 variants by coverage in window 9:26550858-26550859
2012-10-07 16:40:02,474 - DEBUG - Taking top 8 variants by coverage in window 9:26551282-26551283
2012-10-07 16:40:02,844 - DEBUG - Taking top 8 variants by coverage in window 9:26555261-26555262
2012-10-07 16:40:02,876 - DEBUG - Taking top 8 variants by coverage in window 9:26555295-26555296
2012-10-07 16:40:03,513 - DEBUG - Taking top 8 variants by coverage in window 9:26564962-26564978
2012-10-07 16:40:04,904 - DEBUG - Taking top 8 variants by coverage in window 9:26580742-26580743
2012-10-07 16:40:04,976 - DEBUG - Taking top 8 variants by coverage in window 9:26580845-26580846
2012-10-07 16:40:05,403 - DEBUG - Taking top 8 variants by coverage in window 9:26585180-26585183
2012-10-07 16:40:05,912 - DEBUG - Taking top 8 variants by coverage in window 9:26590286-26590303
2012-10-07 16:40:06,520 - DEBUG - Taking top 8 variants by coverage in window 9:26595393-26595399
2012-10-07 16:40:06,772 - DEBUG - Taking top 8 variants by coverage in window 9:26596445-26596446
2012-10-07 16:40:07,075 - DEBUG - Taking top 8 variants by coverage in window 9:26596512-26596515
2012-10-07 16:40:07,195 - DEBUG - Taking top 8 variants by coverage in window 9:26596664-26596672
2012-10-07 16:40:08,238 - DEBUG - Taking top 8 variants by coverage in window 9:26605073-26605076
2012-10-07 16:40:08,554 - DEBUG - Taking top 8 variants by coverage in window 9:26606644-26606645
2012-10-07 16:40:09,132 - DEBUG - Taking top 8 variants by coverage in window 9:26618589-26618590
2012-10-07 16:40:10,488 - DEBUG - Taking top 8 variants by coverage in window 9:26640831-26640832
2012-10-07 16:40:10,522 - DEBUG - Taking top 8 variants by coverage in window 9:26640880-26640881
2012-10-07 16:40:10,630 - DEBUG - Taking top 8 variants by coverage in window 9:26642254-26642255
2012-10-07 16:40:10,884 - DEBUG - Taking top 8 variants by coverage in window 9:26644571-26644572
2012-10-07 16:40:11,979 - DEBUG - Taking top 8 variants by coverage in window 9:26657914-26657915
2012-10-07 16:40:12,063 - DEBUG - Taking top 8 variants by coverage in window 9:26658932-26658949
2012-10-07 16:40:12,156 - DEBUG - Taking top 8 variants by coverage in window 9:26659626-26659627
2012-10-07 16:40:12,629 - DEBUG - Taking top 8 variants by coverage in window 9:26666379-26666381
2012-10-07 16:40:12,680 - DEBUG - Taking top 8 variants by coverage in window 9:26666400-26666401
2012-10-07 16:40:12,917 - DEBUG - Taking top 8 variants by coverage in window 9:26669105-26669106
2012-10-07 16:40:13,972 - DEBUG - Taking top 8 variants by coverage in window 9:26690376-26690377
2012-10-07 16:40:14,136 - DEBUG - Taking top 8 variants by coverage in window 9:26691636-26691639
2012-10-07 16:40:14,263 - DEBUG - Taking top 8 variants by coverage in window 9:26694576-26694577
2012-10-07 16:40:14,847 - DEBUG - Taking top 8 variants by coverage in window 9:26703974-26703975
2012-10-07 16:40:15,697 - DEBUG - Taking top 8 variants by coverage in window 9:26719075-26719080
2012-10-07 16:40:15,755 - DEBUG - Taking top 8 variants by coverage in window 9:26719211-26719212
2012-10-07 16:40:16,061 - DEBUG - Taking top 8 variants by coverage in window 9:26724063-26724065
2012-10-07 16:40:16,235 - DEBUG - Taking top 8 variants by coverage in window 9:26725135-26725136
2012-10-07 16:40:17,156 - DEBUG - Taking top 8 variants by coverage in window 9:26737445-26737448
2012-10-07 16:40:17,615 - DEBUG - Taking top 8 variants by coverage in window 9:26740665-26740670
2012-10-07 16:40:20,548 - DEBUG - Taking top 8 variants by coverage in window 9:26770936-26770937
2012-10-07 16:40:21,325 - DEBUG - Taking top 8 variants by coverage in window 9:26778318-26778319
2012-10-07 16:40:21,346 - DEBUG - Taking top 8 variants by coverage in window 9:26779420-26779421
2012-10-07 16:40:21,399 - DEBUG - Taking top 8 variants by coverage in window 9:26779836-26779847
2012-10-07 16:40:22,267 - DEBUG - Taking top 8 variants by coverage in window 9:26791370-26791376
2012-10-07 16:40:22,581 - DEBUG - Taking top 8 variants by coverage in window 9:26794501-26794503
2012-10-07 16:40:23,234 - DEBUG - Taking top 8 variants by coverage in window 9:26800399-26800400
2012-10-07 16:40:23,949 - DEBUG - Taking top 8 variants by coverage in window 9:26809597-26809601
2012-10-07 16:40:24,490 - DEBUG - Taking top 8 variants by coverage in window 9:26817865-26817866
2012-10-07 16:40:24,510 - DEBUG - Taking top 8 variants by coverage in window 9:26817867-26817869
2012-10-07 16:40:24,822 - DEBUG - Taking top 8 variants by coverage in window 9:26818747-26818748
2012-10-07 16:40:25,156 - DEBUG - Taking top 8 variants by coverage in window 9:26823500-26823501
2012-10-07 16:40:25,725 - DEBUG - Taking top 8 variants by coverage in window 9:26832770-26832771
2012-10-07 16:40:28,375 - DEBUG - Taking top 8 variants by coverage in window 9:26865766-26865767
2012-10-07 16:40:28,541 - DEBUG - Taking top 8 variants by coverage in window 9:26867870-26867871
2012-10-07 16:40:28,745 - DEBUG - Taking top 8 variants by coverage in window 9:26868650-26868653
2012-10-07 16:40:29,001 - DEBUG - Taking top 8 variants by coverage in window 9:26870030-26870031
2012-10-07 16:40:29,082 - DEBUG - Taking top 8 variants by coverage in window 9:26870177-26870178
2012-10-07 16:40:29,108 - DEBUG - Taking top 8 variants by coverage in window 9:26870181-26870182
2012-10-07 16:40:29,495 - DEBUG - Taking top 8 variants by coverage in window 9:26873410-26873411
2012-10-07 16:40:30,322 - DEBUG - Taking top 8 variants by coverage in window 9:26886080-26886081
2012-10-07 16:40:31,179 - DEBUG - Taking top 8 variants by coverage in window 9:26896853-26896855
2012-10-07 16:40:31,274 - DEBUG - Taking top 8 variants by coverage in window 9:26897764-26897765
2012-10-07 16:40:31,797 - DEBUG - Taking top 8 variants by coverage in window 9:26906759-26906760
2012-10-07 16:40:32,056 - DEBUG - Taking top 8 variants by coverage in window 9:26912223-26912224
2012-10-07 16:40:33,108 - DEBUG - Taking top 8 variants by coverage in window 9:26926773-26926774
2012-10-07 16:40:33,357 - DEBUG - Taking top 8 variants by coverage in window 9:26929198-26929199
2012-10-07 16:40:34,199 - DEBUG - Taking top 8 variants by coverage in window 9:26937442-26937443
2012-10-07 16:40:35,994 - DEBUG - Taking top 8 variants by coverage in window 9:26953149-26953150
2012-10-07 16:40:36,043 - DEBUG - Taking top 8 variants by coverage in window 9:26953791-26953792
2012-10-07 16:40:36,257 - DEBUG - Taking top 8 variants by coverage in window 9:26956421-26956423
2012-10-07 16:40:36,334 - DEBUG - Taking top 8 variants by coverage in window 9:26956736-26956737
2012-10-07 16:40:36,453 - DEBUG - Taking top 8 variants by coverage in window 9:26956748-26956749
2012-10-07 16:40:36,492 - DEBUG - Taking top 8 variants by coverage in window 9:26956800-26956801
2012-10-07 16:40:38,226 - DEBUG - Taking top 8 variants by coverage in window 9:26979861-26979862
2012-10-07 16:40:38,814 - DEBUG - Taking top 8 variants by coverage in window 9:26982968-26982969
2012-10-07 16:40:38,907 - DEBUG - Taking top 8 variants by coverage in window 9:26984365-26984366
2012-10-07 16:40:39,254 - DEBUG - Taking top 8 variants by coverage in window 9:26990752-26990753
2012-10-07 16:40:41,067 - DEBUG - Read 99051 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 16:40:41,325 - DEBUG - Read 106514 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 16:40:41,605 - DEBUG - Read 124578 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 16:40:41,921 - DEBUG - Read 125528 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 16:40:42,222 - DEBUG - Read 118564 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 16:40:42,496 - DEBUG - Read 113452 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 16:40:42,777 - DEBUG - Read 119250 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 16:40:43,049 - DEBUG - Read 107410 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 16:40:43,312 - DEBUG - Read 104374 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 16:40:43,577 - DEBUG - Read 105007 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 16:40:43,858 - DEBUG - Read 114508 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 16:40:44,106 - DEBUG - Read 104161 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 16:40:44,370 - DEBUG - Read 106457 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 16:40:44,632 - DEBUG - Read 115008 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 16:40:44,927 - DEBUG - Read 126814 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 16:40:45,179 - DEBUG - Read 98395 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 16:40:45,455 - DEBUG - Read 120695 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 16:40:45,737 - DEBUG - Read 115573 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 16:40:45,977 - DEBUG - Read 99107 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 16:40:46,238 - DEBUG - Read 100376 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 16:40:46,348 - DEBUG - Detected 22507 variants in 99051 reads
2012-10-07 16:40:46,519 - DEBUG - Detected 32573 variants in 106514 reads
2012-10-07 16:40:46,744 - DEBUG - Detected 39839 variants in 124578 reads
2012-10-07 16:40:47,011 - DEBUG - Detected 46969 variants in 125528 reads
2012-10-07 16:40:47,302 - DEBUG - Detected 55327 variants in 118564 reads
2012-10-07 16:40:47,636 - DEBUG - Detected 61478 variants in 113452 reads
2012-10-07 16:40:48,045 - DEBUG - Detected 75922 variants in 119250 reads
2012-10-07 16:40:48,477 - DEBUG - Detected 80671 variants in 107410 reads
2012-10-07 16:40:48,929 - DEBUG - Detected 86027 variants in 104374 reads
2012-10-07 16:40:49,421 - DEBUG - Detected 91387 variants in 105007 reads
2012-10-07 16:40:49,936 - DEBUG - Detected 96306 variants in 114508 reads
2012-10-07 16:40:50,440 - DEBUG - Detected 100206 variants in 104161 reads
2012-10-07 16:40:51,034 - DEBUG - Detected 104314 variants in 106457 reads
2012-10-07 16:40:51,581 - DEBUG - Detected 108808 variants in 115008 reads
2012-10-07 16:40:52,118 - DEBUG - Detected 116410 variants in 126814 reads
2012-10-07 16:40:52,671 - DEBUG - Detected 120194 variants in 98395 reads
2012-10-07 16:40:53,268 - DEBUG - Detected 123608 variants in 120695 reads
2012-10-07 16:40:53,914 - DEBUG - Detected 127798 variants in 115573 reads
2012-10-07 16:40:54,605 - DEBUG - Detected 131868 variants in 99107 reads
2012-10-07 16:40:55,262 - DEBUG - Detected 136141 variants in 100376 reads
2012-10-07 16:40:56,536 - DEBUG - Taking top 8 variants by coverage in window 9:27005570-27005571
2012-10-07 16:40:57,324 - DEBUG - Taking top 8 variants by coverage in window 9:27019271-27019272
2012-10-07 16:40:57,372 - DEBUG - Taking top 8 variants by coverage in window 9:27019341-27019356
2012-10-07 16:40:57,659 - DEBUG - Taking top 8 variants by coverage in window 9:27022013-27022014
2012-10-07 16:40:59,072 - DEBUG - Taking top 8 variants by coverage in window 9:27040654-27040655
2012-10-07 16:40:59,162 - DEBUG - Taking top 8 variants by coverage in window 9:27041102-27041103
2012-10-07 16:40:59,471 - DEBUG - Taking top 8 variants by coverage in window 9:27044235-27044243
2012-10-07 16:41:00,175 - DEBUG - Taking top 8 variants by coverage in window 9:27052680-27052681
2012-10-07 16:41:00,611 - DEBUG - Taking top 8 variants by coverage in window 9:27057344-27057346
2012-10-07 16:41:00,857 - DEBUG - Taking top 8 variants by coverage in window 9:27059460-27059461
2012-10-07 16:41:01,568 - DEBUG - Taking top 8 variants by coverage in window 9:27068774-27068775
2012-10-07 16:41:01,866 - DEBUG - Taking top 8 variants by coverage in window 9:27071254-27071255
2012-10-07 16:41:01,959 - DEBUG - Taking top 8 variants by coverage in window 9:27071390-27071391
2012-10-07 16:41:01,995 - DEBUG - Taking top 8 variants by coverage in window 9:27071447-27071452
2012-10-07 16:41:02,771 - DEBUG - Taking top 8 variants by coverage in window 9:27080163-27080164
2012-10-07 16:41:03,921 - DEBUG - Taking top 8 variants by coverage in window 9:27094641-27094644
2012-10-07 16:41:04,493 - DEBUG - Taking top 8 variants by coverage in window 9:27104521-27104525
2012-10-07 16:41:04,742 - DEBUG - Taking top 8 variants by coverage in window 9:27109289-27109290
2012-10-07 16:41:04,769 - DEBUG - Taking top 8 variants by coverage in window 9:27109291-27109292
2012-10-07 16:41:05,198 - DEBUG - Taking top 8 variants by coverage in window 9:27113997-27113998
2012-10-07 16:41:06,489 - DEBUG - Taking top 8 variants by coverage in window 9:27136954-27136959
2012-10-07 16:41:06,526 - DEBUG - Taking top 8 variants by coverage in window 9:27136986-27136987
2012-10-07 16:41:06,874 - DEBUG - Taking top 8 variants by coverage in window 9:27144270-27144275
2012-10-07 16:41:08,376 - DEBUG - Taking top 8 variants by coverage in window 9:27162791-27162792
2012-10-07 16:41:09,219 - DEBUG - Taking top 8 variants by coverage in window 9:27171784-27171785
2012-10-07 16:41:09,543 - DEBUG - Taking top 8 variants by coverage in window 9:27175709-27175712
2012-10-07 16:41:10,267 - DEBUG - Taking top 8 variants by coverage in window 9:27183788-27183789
2012-10-07 16:41:10,500 - DEBUG - Taking top 8 variants by coverage in window 9:27185010-27185011
2012-10-07 16:41:10,529 - DEBUG - Taking top 8 variants by coverage in window 9:27185597-27185598
2012-10-07 16:41:10,596 - DEBUG - Taking top 8 variants by coverage in window 9:27186110-27186111
2012-10-07 16:41:10,899 - DEBUG - Taking top 8 variants by coverage in window 9:27188648-27188649
2012-10-07 16:41:11,183 - DEBUG - Taking top 8 variants by coverage in window 9:27191955-27191956
2012-10-07 16:41:11,791 - DEBUG - Taking top 8 variants by coverage in window 9:27198599-27198600
2012-10-07 16:41:12,019 - DEBUG - Taking top 8 variants by coverage in window 9:27199742-27199743
2012-10-07 16:41:12,265 - DEBUG - Taking top 8 variants by coverage in window 9:27203078-27203079
2012-10-07 16:41:12,725 - DEBUG - Taking top 8 variants by coverage in window 9:27203718-27203721
2012-10-07 16:41:12,766 - DEBUG - Taking top 8 variants by coverage in window 9:27203722-27203729
2012-10-07 16:41:13,071 - DEBUG - Taking top 8 variants by coverage in window 9:27204863-27204864
2012-10-07 16:41:13,468 - DEBUG - Taking top 8 variants by coverage in window 9:27209542-27209543
2012-10-07 16:41:13,718 - DEBUG - Taking top 8 variants by coverage in window 9:27211954-27211955
2012-10-07 16:41:13,730 - DEBUG - Taking top 8 variants by coverage in window 9:27211967-27211968
2012-10-07 16:41:14,573 - DEBUG - Taking top 8 variants by coverage in window 9:27220564-27220568
2012-10-07 16:41:14,632 - DEBUG - Taking top 8 variants by coverage in window 9:27220574-27220575
2012-10-07 16:41:14,868 - DEBUG - Taking top 8 variants by coverage in window 9:27223188-27223189
2012-10-07 16:41:15,226 - DEBUG - Taking top 8 variants by coverage in window 9:27226045-27226046
2012-10-07 16:41:15,248 - DEBUG - Taking top 8 variants by coverage in window 9:27226050-27226051
2012-10-07 16:41:17,006 - DEBUG - Taking top 8 variants by coverage in window 9:27245424-27245425
2012-10-07 16:41:17,205 - DEBUG - Taking top 8 variants by coverage in window 9:27247241-27247242
2012-10-07 16:41:18,370 - DEBUG - Taking top 8 variants by coverage in window 9:27266597-27266617
2012-10-07 16:41:18,526 - DEBUG - Taking top 8 variants by coverage in window 9:27268215-27268216
2012-10-07 16:41:18,993 - DEBUG - Taking top 8 variants by coverage in window 9:27278741-27278742
2012-10-07 16:41:19,044 - DEBUG - Taking top 8 variants by coverage in window 9:27278940-27278945
2012-10-07 16:41:19,407 - DEBUG - Taking top 8 variants by coverage in window 9:27283454-27283455
2012-10-07 16:41:21,051 - DEBUG - Taking top 8 variants by coverage in window 9:27305959-27305960
2012-10-07 16:41:21,217 - DEBUG - Taking top 8 variants by coverage in window 9:27308664-27308665
2012-10-07 16:41:21,310 - DEBUG - Taking top 8 variants by coverage in window 9:27310082-27310088
2012-10-07 16:41:21,353 - DEBUG - Taking top 8 variants by coverage in window 9:27310093-27310094
2012-10-07 16:41:22,082 - DEBUG - Taking top 8 variants by coverage in window 9:27321497-27321498
2012-10-07 16:41:22,336 - DEBUG - Taking top 8 variants by coverage in window 9:27322819-27322827
2012-10-07 16:41:24,170 - DEBUG - Taking top 8 variants by coverage in window 9:27352975-27352976
2012-10-07 16:41:24,566 - DEBUG - Taking top 8 variants by coverage in window 9:27357182-27357183
2012-10-07 16:41:24,691 - DEBUG - Taking top 8 variants by coverage in window 9:27358442-27358444
2012-10-07 16:41:24,954 - DEBUG - Taking top 8 variants by coverage in window 9:27361396-27361398
2012-10-07 16:41:25,752 - DEBUG - Taking top 8 variants by coverage in window 9:27378859-27378860
2012-10-07 16:41:26,002 - DEBUG - Taking top 8 variants by coverage in window 9:27382249-27382250
2012-10-07 16:41:26,673 - DEBUG - Taking top 8 variants by coverage in window 9:27391575-27391580
2012-10-07 16:41:28,700 - DEBUG - Taking top 8 variants by coverage in window 9:27412310-27412316
2012-10-07 16:41:30,259 - DEBUG - Taking top 8 variants by coverage in window 9:27437685-27437686
2012-10-07 16:41:30,276 - DEBUG - Taking top 8 variants by coverage in window 9:27437893-27437900
2012-10-07 16:41:31,151 - DEBUG - Taking top 8 variants by coverage in window 9:27448957-27448963
2012-10-07 16:41:31,211 - DEBUG - Taking top 8 variants by coverage in window 9:27449723-27449724
2012-10-07 16:41:31,226 - DEBUG - Taking top 8 variants by coverage in window 9:27449730-27449731
2012-10-07 16:41:32,460 - DEBUG - Taking top 8 variants by coverage in window 9:27467875-27467895
2012-10-07 16:41:32,505 - DEBUG - Taking top 8 variants by coverage in window 9:27468930-27468931
2012-10-07 16:41:32,712 - DEBUG - Taking top 8 variants by coverage in window 9:27472906-27472907
2012-10-07 16:41:32,811 - DEBUG - Taking top 8 variants by coverage in window 9:27472988-27473000
2012-10-07 16:41:34,126 - DEBUG - Taking top 8 variants by coverage in window 9:27476146-27476147
2012-10-07 16:41:34,279 - DEBUG - Taking top 8 variants by coverage in window 9:27477727-27477729
2012-10-07 16:41:34,754 - DEBUG - Taking top 8 variants by coverage in window 9:27483278-27483279
2012-10-07 16:41:36,065 - DEBUG - Taking top 8 variants by coverage in window 9:27505248-27505250
2012-10-07 16:41:36,253 - DEBUG - Taking top 8 variants by coverage in window 9:27505763-27505765
2012-10-07 16:41:36,585 - DEBUG - Taking top 8 variants by coverage in window 9:27509073-27509074
2012-10-07 16:41:37,856 - DEBUG - Taking top 8 variants by coverage in window 9:27528616-27528617
2012-10-07 16:41:39,927 - DEBUG - Taking top 8 variants by coverage in window 9:27555829-27555830
2012-10-07 16:41:39,949 - DEBUG - Taking top 8 variants by coverage in window 9:27555836-27555837
2012-10-07 16:41:40,461 - DEBUG - Taking top 8 variants by coverage in window 9:27561896-27561897
2012-10-07 16:41:41,754 - DEBUG - Taking top 8 variants by coverage in window 9:27576884-27576885
2012-10-07 16:41:42,367 - DEBUG - Taking top 8 variants by coverage in window 9:27583396-27583399
2012-10-07 16:41:42,635 - DEBUG - Taking top 8 variants by coverage in window 9:27585607-27585608
2012-10-07 16:41:42,713 - DEBUG - Taking top 8 variants by coverage in window 9:27586974-27586975
2012-10-07 16:41:42,884 - DEBUG - Taking top 8 variants by coverage in window 9:27587517-27587518
2012-10-07 16:41:43,063 - DEBUG - Taking top 8 variants by coverage in window 9:27587608-27587609
2012-10-07 16:41:43,403 - DEBUG - Taking top 8 variants by coverage in window 9:27591653-27591654
2012-10-07 16:41:44,002 - DEBUG - Taking top 8 variants by coverage in window 9:27597973-27597984
2012-10-07 16:41:44,321 - DEBUG - Taking top 8 variants by coverage in window 9:27602115-27602116
2012-10-07 16:41:44,373 - DEBUG - Taking top 8 variants by coverage in window 9:27603608-27603610
2012-10-07 16:41:44,407 - DEBUG - Taking top 8 variants by coverage in window 9:27603639-27603640
2012-10-07 16:41:44,541 - DEBUG - Taking top 8 variants by coverage in window 9:27604837-27604838
2012-10-07 16:41:44,569 - DEBUG - Taking top 8 variants by coverage in window 9:27604927-27604929
2012-10-07 16:41:45,275 - DEBUG - Taking top 8 variants by coverage in window 9:27613357-27613359
2012-10-07 16:41:45,630 - DEBUG - Taking top 8 variants by coverage in window 9:27615559-27615560
2012-10-07 16:41:45,858 - DEBUG - Taking top 8 variants by coverage in window 9:27616600-27616601
2012-10-07 16:41:46,443 - DEBUG - Taking top 8 variants by coverage in window 9:27625120-27625123
2012-10-07 16:41:46,454 - DEBUG - Taking top 8 variants by coverage in window 9:27625125-27625127
2012-10-07 16:41:46,662 - DEBUG - Taking top 8 variants by coverage in window 9:27628340-27628341
2012-10-07 16:41:47,877 - DEBUG - Taking top 8 variants by coverage in window 9:27648799-27648800
2012-10-07 16:41:47,902 - DEBUG - Taking top 8 variants by coverage in window 9:27648802-27648804
2012-10-07 16:41:48,042 - DEBUG - Taking top 8 variants by coverage in window 9:27648828-27648829
2012-10-07 16:41:48,328 - DEBUG - Taking top 8 variants by coverage in window 9:27650224-27650225
2012-10-07 16:41:49,692 - DEBUG - Taking top 8 variants by coverage in window 9:27662821-27662838
2012-10-07 16:41:49,722 - DEBUG - Taking top 8 variants by coverage in window 9:27662868-27662869
2012-10-07 16:41:50,023 - DEBUG - Taking top 8 variants by coverage in window 9:27664816-27664817
2012-10-07 16:41:50,180 - DEBUG - Taking top 8 variants by coverage in window 9:27666555-27666556
2012-10-07 16:41:50,431 - DEBUG - Taking top 8 variants by coverage in window 9:27668253-27668254
2012-10-07 16:41:51,546 - DEBUG - Taking top 8 variants by coverage in window 9:27681835-27681837
2012-10-07 16:41:54,094 - DEBUG - Taking top 8 variants by coverage in window 9:27717571-27717572
2012-10-07 16:41:55,079 - DEBUG - Taking top 8 variants by coverage in window 9:27731060-27731062
2012-10-07 16:41:55,276 - DEBUG - Taking top 8 variants by coverage in window 9:27733663-27733664
2012-10-07 16:41:55,578 - DEBUG - Taking top 8 variants by coverage in window 9:27737445-27737448
2012-10-07 16:41:55,765 - DEBUG - Taking top 8 variants by coverage in window 9:27740273-27740274
2012-10-07 16:41:55,960 - DEBUG - Taking top 8 variants by coverage in window 9:27741565-27741566
2012-10-07 16:41:57,090 - DEBUG - Taking top 8 variants by coverage in window 9:27760140-27760141
2012-10-07 16:41:57,210 - DEBUG - Taking top 8 variants by coverage in window 9:27761966-27761967
2012-10-07 16:41:57,272 - DEBUG - Taking top 8 variants by coverage in window 9:27762847-27762852
2012-10-07 16:41:57,303 - DEBUG - Taking top 8 variants by coverage in window 9:27762911-27762912
2012-10-07 16:41:57,555 - DEBUG - Taking top 8 variants by coverage in window 9:27766729-27766730
2012-10-07 16:41:57,605 - DEBUG - Taking top 8 variants by coverage in window 9:27766740-27766741
2012-10-07 16:41:57,949 - DEBUG - Taking top 8 variants by coverage in window 9:27770792-27770793
2012-10-07 16:41:58,757 - DEBUG - Taking top 8 variants by coverage in window 9:27789158-27789182
2012-10-07 16:41:59,297 - DEBUG - Taking top 8 variants by coverage in window 9:27796807-27796808
2012-10-07 16:41:59,698 - DEBUG - Taking top 8 variants by coverage in window 9:27799656-27799659
2012-10-07 16:41:59,960 - DEBUG - Taking top 8 variants by coverage in window 9:27802701-27802704
2012-10-07 16:42:00,700 - DEBUG - Taking top 8 variants by coverage in window 9:27813156-27813168
2012-10-07 16:42:00,748 - DEBUG - Taking top 8 variants by coverage in window 9:27813498-27813499
2012-10-07 16:42:01,752 - DEBUG - Taking top 8 variants by coverage in window 9:27829322-27829324
2012-10-07 16:42:01,780 - DEBUG - Taking top 8 variants by coverage in window 9:27829325-27829327
2012-10-07 16:42:01,814 - DEBUG - Taking top 8 variants by coverage in window 9:27829374-27829375
2012-10-07 16:42:03,409 - DEBUG - Taking top 8 variants by coverage in window 9:27849430-27849431
2012-10-07 16:42:03,476 - DEBUG - Taking top 8 variants by coverage in window 9:27849470-27849471
2012-10-07 16:42:03,593 - DEBUG - Taking top 8 variants by coverage in window 9:27850332-27850334
2012-10-07 16:42:03,971 - DEBUG - Taking top 8 variants by coverage in window 9:27854983-27854985
2012-10-07 16:42:04,185 - DEBUG - Taking top 8 variants by coverage in window 9:27855856-27855857
2012-10-07 16:42:04,198 - DEBUG - Taking top 8 variants by coverage in window 9:27855889-27855890
2012-10-07 16:42:04,856 - DEBUG - Taking top 8 variants by coverage in window 9:27865546-27865547
2012-10-07 16:42:05,963 - DEBUG - Taking top 8 variants by coverage in window 9:27882122-27882125
2012-10-07 16:42:07,831 - DEBUG - Taking top 8 variants by coverage in window 9:27904199-27904203
2012-10-07 16:42:08,486 - DEBUG - Taking top 8 variants by coverage in window 9:27915607-27915618
2012-10-07 16:42:09,287 - DEBUG - Taking top 8 variants by coverage in window 9:27928158-27928159
2012-10-07 16:42:09,436 - DEBUG - Taking top 8 variants by coverage in window 9:27929395-27929397
2012-10-07 16:42:09,851 - DEBUG - Taking top 8 variants by coverage in window 9:27933820-27933821
2012-10-07 16:42:09,881 - DEBUG - Taking top 8 variants by coverage in window 9:27933837-27933838
2012-10-07 16:42:10,498 - DEBUG - Taking top 8 variants by coverage in window 9:27945497-27945508
2012-10-07 16:42:10,547 - DEBUG - Taking top 8 variants by coverage in window 9:27945509-27945510
2012-10-07 16:42:11,113 - DEBUG - Taking top 8 variants by coverage in window 9:27953015-27953020
2012-10-07 16:42:12,714 - DEBUG - Taking top 8 variants by coverage in window 9:27968279-27968282
2012-10-07 16:42:14,215 - DEBUG - Taking top 8 variants by coverage in window 9:27993209-27993227
2012-10-07 16:42:14,610 - DEBUG - Taking top 8 variants by coverage in window 9:27997644-27997645
2012-10-07 16:42:14,634 - DEBUG - Taking top 8 variants by coverage in window 9:27997648-27997649
2012-10-07 16:42:14,644 - DEBUG - Taking top 8 variants by coverage in window 9:27997649-27997653
2012-10-07 16:42:14,675 - DEBUG - Taking top 8 variants by coverage in window 9:27997654-27997655
2012-10-07 16:42:14,814 - DEBUG - Taking top 8 variants by coverage in window 9:27997703-27997704
2012-10-07 16:42:15,032 - DEBUG - Taking top 8 variants by coverage in window 9:27997756-27997757
2012-10-07 16:42:15,114 - DEBUG - Taking top 8 variants by coverage in window 9:27997776-27997777
2012-10-07 16:42:16,198 - DEBUG - Read 98286 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 16:42:16,435 - DEBUG - Read 104292 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 16:42:16,697 - DEBUG - Read 125427 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 16:42:16,983 - DEBUG - Read 124116 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 16:42:17,256 - DEBUG - Read 119624 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 16:42:17,502 - DEBUG - Read 112094 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 16:42:17,760 - DEBUG - Read 119034 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 16:42:18,007 - DEBUG - Read 106557 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 16:42:18,244 - DEBUG - Read 102972 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 16:42:18,485 - DEBUG - Read 105095 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 16:42:18,743 - DEBUG - Read 114759 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 16:42:18,968 - DEBUG - Read 101853 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 16:42:19,208 - DEBUG - Read 105691 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 16:42:19,447 - DEBUG - Read 114050 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 16:42:19,719 - DEBUG - Read 125447 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 16:42:19,942 - DEBUG - Read 95991 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 16:42:20,194 - DEBUG - Read 118537 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 16:42:20,456 - DEBUG - Read 115704 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 16:42:20,671 - DEBUG - Read 96176 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 16:42:20,910 - DEBUG - Read 100086 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 16:42:20,999 - DEBUG - Detected 21171 variants in 98286 reads
2012-10-07 16:42:21,155 - DEBUG - Detected 32849 variants in 104292 reads
2012-10-07 16:42:21,389 - DEBUG - Detected 40223 variants in 125427 reads
2012-10-07 16:42:21,631 - DEBUG - Detected 47484 variants in 124116 reads
2012-10-07 16:42:21,905 - DEBUG - Detected 53108 variants in 119624 reads
2012-10-07 16:42:22,199 - DEBUG - Detected 59392 variants in 112094 reads
2012-10-07 16:42:22,536 - DEBUG - Detected 72430 variants in 119034 reads
2012-10-07 16:42:22,917 - DEBUG - Detected 77289 variants in 106557 reads
2012-10-07 16:42:23,313 - DEBUG - Detected 82500 variants in 102972 reads
2012-10-07 16:42:23,740 - DEBUG - Detected 86930 variants in 105095 reads
2012-10-07 16:42:24,232 - DEBUG - Detected 92310 variants in 114759 reads
2012-10-07 16:42:24,700 - DEBUG - Detected 96261 variants in 101853 reads
2012-10-07 16:42:25,185 - DEBUG - Detected 100134 variants in 105691 reads
2012-10-07 16:42:25,696 - DEBUG - Detected 104116 variants in 114050 reads
2012-10-07 16:42:26,245 - DEBUG - Detected 110714 variants in 125447 reads
2012-10-07 16:42:26,790 - DEBUG - Detected 114258 variants in 95991 reads
2012-10-07 16:42:27,374 - DEBUG - Detected 117445 variants in 118537 reads
2012-10-07 16:42:28,016 - DEBUG - Detected 121703 variants in 115704 reads
2012-10-07 16:42:28,615 - DEBUG - Detected 125285 variants in 96176 reads
2012-10-07 16:42:29,231 - DEBUG - Detected 129298 variants in 100086 reads
2012-10-07 16:42:30,726 - DEBUG - Taking top 8 variants by coverage in window 9:28008911-28008912
2012-10-07 16:42:30,897 - DEBUG - Taking top 8 variants by coverage in window 9:28011277-28011278
2012-10-07 16:42:31,629 - DEBUG - Taking top 8 variants by coverage in window 9:28023194-28023195
2012-10-07 16:42:31,836 - DEBUG - Taking top 8 variants by coverage in window 9:28025757-28025758
2012-10-07 16:42:31,850 - DEBUG - Taking top 8 variants by coverage in window 9:28025758-28025759
2012-10-07 16:42:32,538 - DEBUG - Taking top 8 variants by coverage in window 9:28037022-28037023
2012-10-07 16:42:32,717 - DEBUG - Taking top 8 variants by coverage in window 9:28037891-28037892
2012-10-07 16:42:33,033 - DEBUG - Taking top 8 variants by coverage in window 9:28041799-28041800
2012-10-07 16:42:33,479 - DEBUG - Taking top 8 variants by coverage in window 9:28047889-28047890
2012-10-07 16:42:34,776 - DEBUG - Taking top 8 variants by coverage in window 9:28057527-28057539
2012-10-07 16:42:34,791 - DEBUG - Taking top 8 variants by coverage in window 9:28057612-28057613
2012-10-07 16:42:35,256 - DEBUG - Taking top 8 variants by coverage in window 9:28062399-28062402
2012-10-07 16:42:35,893 - DEBUG - Taking top 8 variants by coverage in window 9:28067802-28067803
2012-10-07 16:42:35,917 - DEBUG - Taking top 8 variants by coverage in window 9:28068000-28068001
2012-10-07 16:42:36,221 - DEBUG - Taking top 8 variants by coverage in window 9:28070202-28070203
2012-10-07 16:42:36,517 - DEBUG - Taking top 8 variants by coverage in window 9:28075363-28075364
2012-10-07 16:42:36,742 - DEBUG - Taking top 8 variants by coverage in window 9:28079206-28079207
2012-10-07 16:42:36,865 - DEBUG - Taking top 8 variants by coverage in window 9:28080972-28080980
2012-10-07 16:42:37,918 - DEBUG - Taking top 8 variants by coverage in window 9:28097244-28097245
2012-10-07 16:42:38,229 - DEBUG - Taking top 8 variants by coverage in window 9:28099195-28099196
2012-10-07 16:42:38,237 - DEBUG - Taking top 8 variants by coverage in window 9:28099197-28099200
2012-10-07 16:42:38,327 - DEBUG - Taking top 8 variants by coverage in window 9:28099235-28099236
2012-10-07 16:42:38,687 - DEBUG - Taking top 8 variants by coverage in window 9:28103911-28103912
2012-10-07 16:42:38,801 - DEBUG - Taking top 8 variants by coverage in window 9:28104655-28104665
2012-10-07 16:42:38,884 - DEBUG - Taking top 8 variants by coverage in window 9:28105411-28105412
2012-10-07 16:42:39,524 - DEBUG - Taking top 8 variants by coverage in window 9:28111665-28111666
2012-10-07 16:42:40,066 - DEBUG - Taking top 8 variants by coverage in window 9:28122974-28122977
2012-10-07 16:42:41,164 - DEBUG - Taking top 8 variants by coverage in window 9:28143182-28143183
2012-10-07 16:42:41,334 - DEBUG - Taking top 8 variants by coverage in window 9:28145395-28145396
2012-10-07 16:42:42,386 - DEBUG - Taking top 8 variants by coverage in window 9:28163822-28163823
2012-10-07 16:42:42,913 - DEBUG - Taking top 8 variants by coverage in window 9:28170562-28170563
2012-10-07 16:42:43,046 - DEBUG - Taking top 8 variants by coverage in window 9:28171795-28171796
2012-10-07 16:42:43,215 - DEBUG - Taking top 8 variants by coverage in window 9:28173506-28173508
2012-10-07 16:42:44,349 - DEBUG - Taking top 8 variants by coverage in window 9:28181474-28181475
2012-10-07 16:42:44,753 - DEBUG - Taking top 8 variants by coverage in window 9:28186365-28186366
2012-10-07 16:42:45,083 - DEBUG - Taking top 8 variants by coverage in window 9:28188701-28188702
2012-10-07 16:42:46,008 - DEBUG - Taking top 8 variants by coverage in window 9:28202245-28202246
2012-10-07 16:42:46,143 - DEBUG - Taking top 8 variants by coverage in window 9:28204873-28204874
2012-10-07 16:42:46,933 - DEBUG - Taking top 8 variants by coverage in window 9:28217649-28217650
2012-10-07 16:42:46,963 - DEBUG - Taking top 8 variants by coverage in window 9:28217958-28217963
2012-10-07 16:42:47,210 - DEBUG - Taking top 8 variants by coverage in window 9:28223208-28223211
2012-10-07 16:42:47,493 - DEBUG - Taking top 8 variants by coverage in window 9:28227577-28227578
2012-10-07 16:42:48,389 - DEBUG - Taking top 8 variants by coverage in window 9:28246972-28246973
2012-10-07 16:42:48,398 - DEBUG - Taking top 8 variants by coverage in window 9:28246985-28246986
2012-10-07 16:42:48,724 - DEBUG - Taking top 8 variants by coverage in window 9:28250905-28250907
2012-10-07 16:42:48,780 - DEBUG - Taking top 8 variants by coverage in window 9:28250911-28250916
2012-10-07 16:42:49,661 - DEBUG - Taking top 8 variants by coverage in window 9:28268873-28268874
2012-10-07 16:42:49,765 - DEBUG - Taking top 8 variants by coverage in window 9:28269737-28269738
2012-10-07 16:42:49,937 - DEBUG - Taking top 8 variants by coverage in window 9:28270856-28270857
2012-10-07 16:42:51,241 - DEBUG - Taking top 8 variants by coverage in window 9:28289968-28289971
2012-10-07 16:42:51,685 - DEBUG - Taking top 8 variants by coverage in window 9:28295011-28295012
2012-10-07 16:42:51,719 - DEBUG - Taking top 8 variants by coverage in window 9:28295150-28295151
2012-10-07 16:42:51,940 - DEBUG - Taking top 8 variants by coverage in window 9:28297334-28297337
2012-10-07 16:42:52,317 - DEBUG - Taking top 8 variants by coverage in window 9:28304086-28304087
2012-10-07 16:42:53,249 - DEBUG - Taking top 8 variants by coverage in window 9:28317016-28317022
2012-10-07 16:42:53,637 - DEBUG - Taking top 8 variants by coverage in window 9:28318874-28318894
2012-10-07 16:42:54,701 - DEBUG - Taking top 8 variants by coverage in window 9:28332337-28332341
2012-10-07 16:42:57,683 - DEBUG - Taking top 8 variants by coverage in window 9:28373067-28373070
2012-10-07 16:42:57,698 - DEBUG - Taking top 8 variants by coverage in window 9:28373106-28373110
2012-10-07 16:42:58,879 - DEBUG - Taking top 8 variants by coverage in window 9:28388389-28388390
2012-10-07 16:43:00,712 - DEBUG - Taking top 8 variants by coverage in window 9:28413007-28413012
2012-10-07 16:43:01,277 - DEBUG - Taking top 8 variants by coverage in window 9:28415927-28415946
2012-10-07 16:43:03,496 - DEBUG - Taking top 8 variants by coverage in window 9:28445721-28445722
2012-10-07 16:43:04,777 - DEBUG - Taking top 8 variants by coverage in window 9:28468752-28468753
2012-10-07 16:43:06,775 - DEBUG - Taking top 8 variants by coverage in window 9:28502076-28502077
2012-10-07 16:43:06,851 - DEBUG - Taking top 8 variants by coverage in window 9:28503923-28503926
2012-10-07 16:43:07,030 - DEBUG - Taking top 8 variants by coverage in window 9:28504456-28504457
2012-10-07 16:43:07,054 - DEBUG - Taking top 8 variants by coverage in window 9:28504459-28504460
2012-10-07 16:43:07,244 - DEBUG - Taking top 8 variants by coverage in window 9:28506455-28506456
2012-10-07 16:43:07,665 - DEBUG - Taking top 8 variants by coverage in window 9:28512213-28512214
2012-10-07 16:43:08,690 - DEBUG - Taking top 8 variants by coverage in window 9:28526837-28526838
2012-10-07 16:43:09,958 - DEBUG - Taking top 8 variants by coverage in window 9:28544531-28544532
2012-10-07 16:43:10,753 - DEBUG - Taking top 8 variants by coverage in window 9:28556331-28556332
2012-10-07 16:43:12,417 - DEBUG - Taking top 8 variants by coverage in window 9:28576164-28576165
2012-10-07 16:43:12,912 - DEBUG - Taking top 8 variants by coverage in window 9:28580388-28580389
2012-10-07 16:43:13,070 - DEBUG - Taking top 8 variants by coverage in window 9:28581780-28581781
2012-10-07 16:43:14,424 - DEBUG - Taking top 8 variants by coverage in window 9:28595320-28595321
2012-10-07 16:43:14,537 - DEBUG - Taking top 8 variants by coverage in window 9:28596026-28596028
2012-10-07 16:43:14,697 - DEBUG - Taking top 8 variants by coverage in window 9:28596139-28596140
2012-10-07 16:43:16,870 - DEBUG - Taking top 8 variants by coverage in window 9:28624307-28624308
2012-10-07 16:43:18,142 - DEBUG - Taking top 8 variants by coverage in window 9:28639377-28639378
2012-10-07 16:43:18,329 - DEBUG - Taking top 8 variants by coverage in window 9:28640370-28640372
2012-10-07 16:43:18,377 - DEBUG - Taking top 8 variants by coverage in window 9:28640641-28640642
2012-10-07 16:43:18,654 - DEBUG - Taking top 8 variants by coverage in window 9:28643075-28643077
2012-10-07 16:43:18,727 - DEBUG - Taking top 8 variants by coverage in window 9:28643117-28643121
2012-10-07 16:43:18,787 - DEBUG - Taking top 8 variants by coverage in window 9:28643138-28643139
2012-10-07 16:43:18,798 - DEBUG - Taking top 8 variants by coverage in window 9:28643139-28643140
2012-10-07 16:43:19,010 - DEBUG - Taking top 8 variants by coverage in window 9:28644450-28644451
2012-10-07 16:43:19,163 - DEBUG - Taking top 8 variants by coverage in window 9:28646193-28646194
2012-10-07 16:43:19,693 - DEBUG - Taking top 8 variants by coverage in window 9:28653133-28653137
2012-10-07 16:43:22,324 - DEBUG - Taking top 8 variants by coverage in window 9:28687319-28687320
2012-10-07 16:43:22,395 - DEBUG - Taking top 8 variants by coverage in window 9:28688012-28688013
2012-10-07 16:43:23,685 - DEBUG - Taking top 8 variants by coverage in window 9:28703692-28703693
2012-10-07 16:43:23,877 - DEBUG - Taking top 8 variants by coverage in window 9:28704158-28704159
2012-10-07 16:43:25,818 - DEBUG - Taking top 8 variants by coverage in window 9:28735815-28735816
2012-10-07 16:43:26,501 - DEBUG - Taking top 8 variants by coverage in window 9:28746781-28746787
2012-10-07 16:43:27,898 - DEBUG - Taking top 8 variants by coverage in window 9:28764391-28764392
2012-10-07 16:43:27,989 - DEBUG - Taking top 8 variants by coverage in window 9:28765580-28765585
2012-10-07 16:43:28,002 - DEBUG - Taking top 8 variants by coverage in window 9:28765595-28765601
2012-10-07 16:43:28,040 - DEBUG - Taking top 8 variants by coverage in window 9:28765631-28765632
2012-10-07 16:43:28,320 - DEBUG - Taking top 8 variants by coverage in window 9:28767206-28767207
2012-10-07 16:43:28,803 - DEBUG - Taking top 8 variants by coverage in window 9:28771588-28771589
2012-10-07 16:43:31,321 - DEBUG - Taking top 8 variants by coverage in window 9:28798200-28798208
2012-10-07 16:43:33,577 - DEBUG - Taking top 8 variants by coverage in window 9:28822287-28822288
2012-10-07 16:43:33,668 - DEBUG - Taking top 8 variants by coverage in window 9:28823086-28823106
2012-10-07 16:43:33,741 - DEBUG - Taking top 8 variants by coverage in window 9:28823740-28823746
2012-10-07 16:43:33,998 - DEBUG - Taking top 8 variants by coverage in window 9:28826007-28826008
2012-10-07 16:43:34,004 - DEBUG - Taking top 8 variants by coverage in window 9:28826008-28826009
2012-10-07 16:43:34,029 - DEBUG - Taking top 8 variants by coverage in window 9:28826026-28826027
2012-10-07 16:43:34,068 - DEBUG - Taking top 8 variants by coverage in window 9:28826081-28826099
2012-10-07 16:43:34,341 - DEBUG - Taking top 8 variants by coverage in window 9:28829443-28829444
2012-10-07 16:43:34,375 - DEBUG - Taking top 8 variants by coverage in window 9:28829486-28829488
2012-10-07 16:43:34,506 - DEBUG - Taking top 8 variants by coverage in window 9:28831211-28831212
2012-10-07 16:43:34,630 - DEBUG - Taking top 8 variants by coverage in window 9:28832094-28832095
2012-10-07 16:43:35,411 - DEBUG - Taking top 8 variants by coverage in window 9:28840833-28840835
2012-10-07 16:43:35,952 - DEBUG - Taking top 8 variants by coverage in window 9:28844827-28844828
2012-10-07 16:43:36,804 - DEBUG - Taking top 8 variants by coverage in window 9:28855076-28855077
2012-10-07 16:43:36,861 - DEBUG - Taking top 8 variants by coverage in window 9:28855164-28855165
2012-10-07 16:43:36,928 - DEBUG - Taking top 8 variants by coverage in window 9:28855180-28855186
2012-10-07 16:43:37,203 - DEBUG - Taking top 8 variants by coverage in window 9:28858253-28858259
2012-10-07 16:43:39,079 - DEBUG - Taking top 8 variants by coverage in window 9:28880670-28880677
2012-10-07 16:43:39,553 - DEBUG - Taking top 8 variants by coverage in window 9:28886074-28886075
2012-10-07 16:43:39,565 - DEBUG - Taking top 8 variants by coverage in window 9:28886086-28886087
2012-10-07 16:43:39,584 - DEBUG - Taking top 8 variants by coverage in window 9:28886103-28886105
2012-10-07 16:43:39,887 - DEBUG - Taking top 8 variants by coverage in window 9:28892687-28892689
2012-10-07 16:43:41,701 - DEBUG - Taking top 8 variants by coverage in window 9:28917825-28917826
2012-10-07 16:43:42,839 - DEBUG - Taking top 8 variants by coverage in window 9:28936040-28936041
2012-10-07 16:43:43,202 - DEBUG - Taking top 8 variants by coverage in window 9:28939477-28939478
2012-10-07 16:43:45,352 - DEBUG - Taking top 8 variants by coverage in window 9:28965716-28965717
2012-10-07 16:43:47,277 - DEBUG - Taking top 8 variants by coverage in window 9:28988417-28988418
2012-10-07 16:43:47,710 - DEBUG - Taking top 8 variants by coverage in window 9:28994408-28994409
2012-10-07 16:43:48,232 - DEBUG - Taking top 8 variants by coverage in window 9:28999934-28999938
2012-10-07 16:43:49,187 - DEBUG - Read 101298 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 16:43:49,430 - DEBUG - Read 108979 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 16:43:49,695 - DEBUG - Read 129016 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 16:43:49,988 - DEBUG - Read 127775 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 16:43:50,271 - DEBUG - Read 123188 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 16:43:50,522 - DEBUG - Read 116161 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 16:43:50,782 - DEBUG - Read 121921 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 16:43:51,037 - DEBUG - Read 110688 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 16:43:51,280 - DEBUG - Read 107325 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 16:43:51,528 - DEBUG - Read 107791 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 16:43:51,790 - DEBUG - Read 117877 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 16:43:52,021 - DEBUG - Read 106170 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 16:43:52,270 - DEBUG - Read 109767 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 16:43:52,516 - DEBUG - Read 118933 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 16:43:52,793 - DEBUG - Read 129368 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 16:43:53,025 - DEBUG - Read 99511 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 16:43:53,281 - DEBUG - Read 124122 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 16:43:53,615 - DEBUG - Read 119184 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 16:43:53,834 - DEBUG - Read 100622 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 16:43:54,075 - DEBUG - Read 103322 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 16:43:54,173 - DEBUG - Detected 22060 variants in 101298 reads
2012-10-07 16:43:54,333 - DEBUG - Detected 33568 variants in 108979 reads
2012-10-07 16:43:54,563 - DEBUG - Detected 40665 variants in 129016 reads
2012-10-07 16:43:54,812 - DEBUG - Detected 48418 variants in 127775 reads
2012-10-07 16:43:55,090 - DEBUG - Detected 55303 variants in 123188 reads
2012-10-07 16:43:55,391 - DEBUG - Detected 61204 variants in 116161 reads
2012-10-07 16:43:55,732 - DEBUG - Detected 75258 variants in 121921 reads
2012-10-07 16:43:56,127 - DEBUG - Detected 80295 variants in 110688 reads
2012-10-07 16:43:56,528 - DEBUG - Detected 85975 variants in 107325 reads
2012-10-07 16:43:57,004 - DEBUG - Detected 90635 variants in 107791 reads
2012-10-07 16:43:57,469 - DEBUG - Detected 95721 variants in 117877 reads
2012-10-07 16:43:57,945 - DEBUG - Detected 99420 variants in 106170 reads
2012-10-07 16:43:58,443 - DEBUG - Detected 103505 variants in 109767 reads
2012-10-07 16:43:58,964 - DEBUG - Detected 107475 variants in 118933 reads
2012-10-07 16:43:59,519 - DEBUG - Detected 114464 variants in 129368 reads
2012-10-07 16:44:00,126 - DEBUG - Detected 118368 variants in 99511 reads
2012-10-07 16:44:00,725 - DEBUG - Detected 121771 variants in 124122 reads
2012-10-07 16:44:01,333 - DEBUG - Detected 125573 variants in 119184 reads
2012-10-07 16:44:01,946 - DEBUG - Detected 129326 variants in 100622 reads
2012-10-07 16:44:02,573 - DEBUG - Detected 133620 variants in 103322 reads
2012-10-07 16:44:03,823 - DEBUG - Taking top 8 variants by coverage in window 9:29004314-29004315
2012-10-07 16:44:04,098 - DEBUG - Taking top 8 variants by coverage in window 9:29005995-29005996
2012-10-07 16:44:05,314 - DEBUG - Taking top 8 variants by coverage in window 9:29023436-29023437
2012-10-07 16:44:06,815 - DEBUG - Taking top 8 variants by coverage in window 9:29041089-29041100
2012-10-07 16:44:07,121 - DEBUG - Taking top 8 variants by coverage in window 9:29044848-29044849
2012-10-07 16:44:07,541 - DEBUG - Taking top 8 variants by coverage in window 9:29049703-29049711
2012-10-07 16:44:07,918 - DEBUG - Taking top 8 variants by coverage in window 9:29054197-29054198
2012-10-07 16:44:09,730 - DEBUG - Taking top 8 variants by coverage in window 9:29079241-29079242
2012-10-07 16:44:09,773 - DEBUG - Taking top 8 variants by coverage in window 9:29079246-29079247
2012-10-07 16:44:09,956 - DEBUG - Taking top 8 variants by coverage in window 9:29080976-29080980
2012-10-07 16:44:10,003 - DEBUG - Taking top 8 variants by coverage in window 9:29081328-29081340
2012-10-07 16:44:10,262 - DEBUG - Taking top 8 variants by coverage in window 9:29084960-29084962
2012-10-07 16:44:10,295 - DEBUG - Taking top 8 variants by coverage in window 9:29086963-29086964
2012-10-07 16:44:10,914 - DEBUG - Taking top 8 variants by coverage in window 9:29094102-29094105
2012-10-07 16:44:12,493 - DEBUG - Taking top 8 variants by coverage in window 9:29120527-29120539
2012-10-07 16:44:12,517 - DEBUG - Taking top 8 variants by coverage in window 9:29120563-29120564
2012-10-07 16:44:12,681 - DEBUG - Taking top 8 variants by coverage in window 9:29121370-29121378
2012-10-07 16:44:14,208 - DEBUG - Taking top 8 variants by coverage in window 9:29134601-29134602
2012-10-07 16:44:14,633 - DEBUG - Taking top 8 variants by coverage in window 9:29136371-29136373
2012-10-07 16:44:15,857 - DEBUG - Taking top 8 variants by coverage in window 9:29157141-29157147
2012-10-07 16:44:16,284 - DEBUG - Taking top 8 variants by coverage in window 9:29159184-29159185
2012-10-07 16:44:18,277 - DEBUG - Taking top 8 variants by coverage in window 9:29185703-29185704
2012-10-07 16:44:18,433 - DEBUG - Taking top 8 variants by coverage in window 9:29187869-29187870
2012-10-07 16:44:18,729 - DEBUG - Taking top 8 variants by coverage in window 9:29190545-29190546
2012-10-07 16:44:19,087 - DEBUG - Taking top 8 variants by coverage in window 9:29193047-29193052
2012-10-07 16:44:19,175 - DEBUG - Taking top 8 variants by coverage in window 9:29193067-29193068
2012-10-07 16:44:19,206 - DEBUG - Taking top 8 variants by coverage in window 9:29193069-29193070
2012-10-07 16:44:19,290 - DEBUG - Taking top 8 variants by coverage in window 9:29193081-29193085
2012-10-07 16:44:19,428 - DEBUG - Taking top 8 variants by coverage in window 9:29193086-29193090
2012-10-07 16:44:19,887 - DEBUG - Taking top 8 variants by coverage in window 9:29196810-29196811
2012-10-07 16:44:20,705 - DEBUG - Taking top 8 variants by coverage in window 9:29210195-29210201
2012-10-07 16:44:21,311 - DEBUG - Taking top 8 variants by coverage in window 9:29215453-29215460
2012-10-07 16:44:21,719 - DEBUG - Taking top 8 variants by coverage in window 9:29223115-29223116
2012-10-07 16:44:21,950 - DEBUG - Taking top 8 variants by coverage in window 9:29227296-29227297
2012-10-07 16:44:22,261 - DEBUG - Taking top 8 variants by coverage in window 9:29230918-29230919
2012-10-07 16:44:22,305 - DEBUG - Taking top 8 variants by coverage in window 9:29231584-29231585
2012-10-07 16:44:22,353 - DEBUG - Taking top 8 variants by coverage in window 9:29231797-29231798
2012-10-07 16:44:23,379 - DEBUG - Taking top 8 variants by coverage in window 9:29251809-29251810
2012-10-07 16:44:23,881 - DEBUG - Taking top 8 variants by coverage in window 9:29257409-29257417
2012-10-07 16:44:24,020 - DEBUG - Taking top 8 variants by coverage in window 9:29259679-29259680
2012-10-07 16:44:24,412 - DEBUG - Taking top 8 variants by coverage in window 9:29266328-29266330
2012-10-07 16:44:24,511 - DEBUG - Taking top 8 variants by coverage in window 9:29267711-29267712
2012-10-07 16:44:24,525 - DEBUG - Taking top 8 variants by coverage in window 9:29267739-29267741
2012-10-07 16:44:24,547 - DEBUG - Taking top 8 variants by coverage in window 9:29267763-29267772
2012-10-07 16:44:24,742 - DEBUG - Taking top 8 variants by coverage in window 9:29271128-29271129
2012-10-07 16:44:25,271 - DEBUG - Taking top 8 variants by coverage in window 9:29282077-29282078
2012-10-07 16:44:25,590 - DEBUG - Taking top 8 variants by coverage in window 9:29284347-29284348
2012-10-07 16:44:26,009 - DEBUG - Taking top 8 variants by coverage in window 9:29291210-29291211
2012-10-07 16:44:26,313 - DEBUG - Taking top 8 variants by coverage in window 9:29293696-29293698
2012-10-07 16:44:26,513 - DEBUG - Taking top 8 variants by coverage in window 9:29296684-29296688
2012-10-07 16:44:26,579 - DEBUG - Taking top 8 variants by coverage in window 9:29297930-29297931
2012-10-07 16:44:26,818 - DEBUG - Taking top 8 variants by coverage in window 9:29302499-29302500
2012-10-07 16:44:27,327 - DEBUG - Taking top 8 variants by coverage in window 9:29311354-29311355
2012-10-07 16:44:28,729 - DEBUG - Taking top 8 variants by coverage in window 9:29330474-29330475
2012-10-07 16:44:30,167 - DEBUG - Taking top 8 variants by coverage in window 9:29354218-29354219
2012-10-07 16:44:30,918 - DEBUG - Taking top 8 variants by coverage in window 9:29363366-29363367
2012-10-07 16:44:31,221 - DEBUG - Taking top 8 variants by coverage in window 9:29369228-29369229
2012-10-07 16:44:32,811 - DEBUG - Taking top 8 variants by coverage in window 9:29396744-29396746
2012-10-07 16:44:33,048 - DEBUG - Taking top 8 variants by coverage in window 9:29401263-29401264
2012-10-07 16:44:33,585 - DEBUG - Taking top 8 variants by coverage in window 9:29411041-29411042
2012-10-07 16:44:33,673 - DEBUG - Taking top 8 variants by coverage in window 9:29411733-29411734
2012-10-07 16:44:33,801 - DEBUG - Taking top 8 variants by coverage in window 9:29412767-29412768
2012-10-07 16:44:33,861 - DEBUG - Taking top 8 variants by coverage in window 9:29413094-29413097
2012-10-07 16:44:33,923 - DEBUG - Taking top 8 variants by coverage in window 9:29413126-29413127
2012-10-07 16:44:34,741 - DEBUG - Taking top 8 variants by coverage in window 9:29427667-29427668
2012-10-07 16:44:34,864 - DEBUG - Taking top 8 variants by coverage in window 9:29429830-29429831
2012-10-07 16:44:35,729 - DEBUG - Taking top 8 variants by coverage in window 9:29441082-29441083
2012-10-07 16:44:36,723 - DEBUG - Taking top 8 variants by coverage in window 9:29454109-29454110
2012-10-07 16:44:36,837 - DEBUG - Taking top 8 variants by coverage in window 9:29454858-29454859
2012-10-07 16:44:37,736 - DEBUG - Taking top 8 variants by coverage in window 9:29464931-29464932
2012-10-07 16:44:37,833 - DEBUG - Taking top 8 variants by coverage in window 9:29465313-29465314
2012-10-07 16:44:38,172 - DEBUG - Taking top 8 variants by coverage in window 9:29469674-29469675
2012-10-07 16:44:38,345 - DEBUG - Taking top 8 variants by coverage in window 9:29471818-29471819
2012-10-07 16:44:38,407 - DEBUG - Taking top 8 variants by coverage in window 9:29472145-29472148
2012-10-07 16:44:38,596 - DEBUG - Taking top 8 variants by coverage in window 9:29473302-29473303
2012-10-07 16:44:38,607 - DEBUG - Taking top 8 variants by coverage in window 9:29473320-29473321
2012-10-07 16:44:38,931 - DEBUG - Taking top 8 variants by coverage in window 9:29477294-29477295
2012-10-07 16:44:38,979 - DEBUG - Taking top 8 variants by coverage in window 9:29477452-29477453
2012-10-07 16:44:39,047 - DEBUG - Taking top 8 variants by coverage in window 9:29478676-29478677
2012-10-07 16:44:39,588 - DEBUG - Taking top 8 variants by coverage in window 9:29488293-29488294
2012-10-07 16:44:40,198 - DEBUG - Taking top 8 variants by coverage in window 9:29496472-29496473
2012-10-07 16:44:40,453 - DEBUG - Taking top 8 variants by coverage in window 9:29500448-29500449
2012-10-07 16:44:40,472 - DEBUG - Taking top 8 variants by coverage in window 9:29500466-29500467
2012-10-07 16:44:40,556 - DEBUG - Taking top 8 variants by coverage in window 9:29502214-29502215
2012-10-07 16:44:40,566 - DEBUG - Taking top 8 variants by coverage in window 9:29502240-29502241
2012-10-07 16:44:40,717 - DEBUG - Taking top 8 variants by coverage in window 9:29505557-29505560
2012-10-07 16:44:40,888 - DEBUG - Taking top 8 variants by coverage in window 9:29508211-29508212
2012-10-07 16:44:40,900 - DEBUG - Taking top 8 variants by coverage in window 9:29508212-29508213
2012-10-07 16:44:41,056 - DEBUG - Taking top 8 variants by coverage in window 9:29509741-29509742
2012-10-07 16:44:41,965 - DEBUG - Taking top 8 variants by coverage in window 9:29520930-29520931
2012-10-07 16:44:42,542 - DEBUG - Taking top 8 variants by coverage in window 9:29528751-29528755
2012-10-07 16:44:42,611 - DEBUG - Taking top 8 variants by coverage in window 9:29530057-29530058
2012-10-07 16:44:42,922 - DEBUG - Taking top 8 variants by coverage in window 9:29532352-29532353
2012-10-07 16:44:43,163 - DEBUG - Taking top 8 variants by coverage in window 9:29536003-29536005
2012-10-07 16:44:43,428 - DEBUG - Taking top 8 variants by coverage in window 9:29539044-29539045
2012-10-07 16:44:43,601 - DEBUG - Taking top 8 variants by coverage in window 9:29542575-29542581
2012-10-07 16:44:44,291 - DEBUG - Taking top 8 variants by coverage in window 9:29549273-29549274
2012-10-07 16:44:45,605 - DEBUG - Taking top 8 variants by coverage in window 9:29568731-29568732
2012-10-07 16:44:47,032 - DEBUG - Taking top 8 variants by coverage in window 9:29586193-29586194
2012-10-07 16:44:47,047 - DEBUG - Taking top 8 variants by coverage in window 9:29586204-29586205
2012-10-07 16:44:47,631 - DEBUG - Taking top 8 variants by coverage in window 9:29591007-29591011
2012-10-07 16:44:47,750 - DEBUG - Taking top 8 variants by coverage in window 9:29591276-29591277
2012-10-07 16:44:49,016 - DEBUG - Taking top 8 variants by coverage in window 9:29607176-29607177
2012-10-07 16:44:49,038 - DEBUG - Taking top 8 variants by coverage in window 9:29607205-29607206
2012-10-07 16:44:49,502 - DEBUG - Taking top 8 variants by coverage in window 9:29613675-29613676
2012-10-07 16:44:49,958 - DEBUG - Taking top 8 variants by coverage in window 9:29618654-29618655
2012-10-07 16:44:50,098 - DEBUG - Taking top 8 variants by coverage in window 9:29620262-29620263
2012-10-07 16:44:50,109 - DEBUG - Taking top 8 variants by coverage in window 9:29620287-29620288
2012-10-07 16:44:50,116 - DEBUG - Taking top 8 variants by coverage in window 9:29620289-29620290
2012-10-07 16:44:51,014 - DEBUG - Taking top 8 variants by coverage in window 9:29632769-29632770
2012-10-07 16:44:51,134 - DEBUG - Taking top 8 variants by coverage in window 9:29633844-29633845
2012-10-07 16:44:51,809 - DEBUG - Taking top 8 variants by coverage in window 9:29639793-29639794
2012-10-07 16:44:52,289 - DEBUG - Taking top 8 variants by coverage in window 9:29646197-29646198
2012-10-07 16:44:53,504 - DEBUG - Taking top 8 variants by coverage in window 9:29664020-29664021
2012-10-07 16:44:53,671 - DEBUG - Taking top 8 variants by coverage in window 9:29665289-29665290
2012-10-07 16:44:53,877 - DEBUG - Taking top 8 variants by coverage in window 9:29666859-29666860
2012-10-07 16:44:54,014 - DEBUG - Taking top 8 variants by coverage in window 9:29667536-29667537
2012-10-07 16:44:54,485 - DEBUG - Taking top 8 variants by coverage in window 9:29674195-29674196
2012-10-07 16:44:54,946 - DEBUG - Taking top 8 variants by coverage in window 9:29678161-29678162
2012-10-07 16:44:55,061 - DEBUG - Taking top 8 variants by coverage in window 9:29679509-29679510
2012-10-07 16:44:55,602 - DEBUG - Taking top 8 variants by coverage in window 9:29685586-29685587
2012-10-07 16:44:55,686 - DEBUG - Taking top 8 variants by coverage in window 9:29685615-29685617
2012-10-07 16:44:55,826 - DEBUG - Taking top 8 variants by coverage in window 9:29686774-29686775
2012-10-07 16:44:55,839 - DEBUG - Taking top 8 variants by coverage in window 9:29686776-29686777
2012-10-07 16:44:56,059 - DEBUG - Taking top 8 variants by coverage in window 9:29688887-29688907
2012-10-07 16:44:56,131 - DEBUG - Taking top 8 variants by coverage in window 9:29688928-29688929
2012-10-07 16:44:56,147 - DEBUG - Taking top 8 variants by coverage in window 9:29688950-29688951
2012-10-07 16:44:57,281 - DEBUG - Taking top 8 variants by coverage in window 9:29708668-29708669
2012-10-07 16:44:57,337 - DEBUG - Taking top 8 variants by coverage in window 9:29708806-29708812
2012-10-07 16:44:57,927 - DEBUG - Taking top 8 variants by coverage in window 9:29715259-29715260
2012-10-07 16:44:58,914 - DEBUG - Taking top 8 variants by coverage in window 9:29727395-29727396
2012-10-07 16:44:59,007 - DEBUG - Taking top 8 variants by coverage in window 9:29728603-29728611
2012-10-07 16:44:59,625 - DEBUG - Taking top 8 variants by coverage in window 9:29733616-29733617
2012-10-07 16:44:59,983 - DEBUG - Taking top 8 variants by coverage in window 9:29737804-29737805
2012-10-07 16:45:00,531 - DEBUG - Taking top 8 variants by coverage in window 9:29741792-29741794
2012-10-07 16:45:01,929 - DEBUG - Taking top 8 variants by coverage in window 9:29757167-29757169
2012-10-07 16:45:02,792 - DEBUG - Taking top 8 variants by coverage in window 9:29766320-29766321
2012-10-07 16:45:02,826 - DEBUG - Taking top 8 variants by coverage in window 9:29766521-29766524
2012-10-07 16:45:02,886 - DEBUG - Taking top 8 variants by coverage in window 9:29766574-29766577
2012-10-07 16:45:03,392 - DEBUG - Taking top 8 variants by coverage in window 9:29771644-29771645
2012-10-07 16:45:03,689 - DEBUG - Taking top 8 variants by coverage in window 9:29774424-29774426
2012-10-07 16:45:03,873 - DEBUG - Taking top 8 variants by coverage in window 9:29776058-29776063
2012-10-07 16:45:03,891 - DEBUG - Taking top 8 variants by coverage in window 9:29776084-29776085
2012-10-07 16:45:04,725 - DEBUG - Taking top 8 variants by coverage in window 9:29786559-29786560
2012-10-07 16:45:05,065 - DEBUG - Taking top 8 variants by coverage in window 9:29790273-29790284
2012-10-07 16:45:06,945 - DEBUG - Taking top 8 variants by coverage in window 9:29811295-29811296
2012-10-07 16:45:06,958 - DEBUG - Taking top 8 variants by coverage in window 9:29811302-29811303
2012-10-07 16:45:07,170 - DEBUG - Taking top 8 variants by coverage in window 9:29814263-29814264
2012-10-07 16:45:07,209 - DEBUG - Taking top 8 variants by coverage in window 9:29814364-29814365
2012-10-07 16:45:07,218 - DEBUG - Taking top 8 variants by coverage in window 9:29814379-29814381
2012-10-07 16:45:07,264 - DEBUG - Taking top 8 variants by coverage in window 9:29814417-29814424
2012-10-07 16:45:07,811 - DEBUG - Taking top 8 variants by coverage in window 9:29820011-29820012
2012-10-07 16:45:08,826 - DEBUG - Taking top 8 variants by coverage in window 9:29834265-29834266
2012-10-07 16:45:08,977 - DEBUG - Taking top 8 variants by coverage in window 9:29837340-29837341
2012-10-07 16:45:09,421 - DEBUG - Taking top 8 variants by coverage in window 9:29840231-29840234
2012-10-07 16:45:09,565 - DEBUG - Taking top 8 variants by coverage in window 9:29840250-29840251
2012-10-07 16:45:09,604 - DEBUG - Taking top 8 variants by coverage in window 9:29840316-29840317
2012-10-07 16:45:09,855 - DEBUG - Taking top 8 variants by coverage in window 9:29842724-29842725
2012-10-07 16:45:10,115 - DEBUG - Taking top 8 variants by coverage in window 9:29845547-29845553
2012-10-07 16:45:10,838 - DEBUG - Taking top 8 variants by coverage in window 9:29853954-29853966
2012-10-07 16:45:10,852 - DEBUG - Taking top 8 variants by coverage in window 9:29853971-29853976
2012-10-07 16:45:10,987 - DEBUG - Taking top 8 variants by coverage in window 9:29855512-29855515
2012-10-07 16:45:14,087 - DEBUG - Taking top 8 variants by coverage in window 9:29891511-29891512
2012-10-07 16:45:14,412 - DEBUG - Taking top 8 variants by coverage in window 9:29895385-29895386
2012-10-07 16:45:15,515 - DEBUG - Taking top 8 variants by coverage in window 9:29907404-29907405
2012-10-07 16:45:18,937 - DEBUG - Taking top 8 variants by coverage in window 9:29948257-29948263
2012-10-07 16:45:19,716 - DEBUG - Taking top 8 variants by coverage in window 9:29958206-29958215
2012-10-07 16:45:19,788 - DEBUG - Taking top 8 variants by coverage in window 9:29958227-29958228
2012-10-07 16:45:20,061 - DEBUG - Taking top 8 variants by coverage in window 9:29961580-29961583
2012-10-07 16:45:20,393 - DEBUG - Taking top 8 variants by coverage in window 9:29966429-29966430
2012-10-07 16:45:20,409 - DEBUG - Taking top 8 variants by coverage in window 9:29966437-29966438
2012-10-07 16:45:20,803 - DEBUG - Taking top 8 variants by coverage in window 9:29971576-29971577
2012-10-07 16:45:21,411 - DEBUG - Taking top 8 variants by coverage in window 9:29980544-29980545
2012-10-07 16:45:23,753 - DEBUG - Read 98541 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 16:45:23,999 - DEBUG - Read 106522 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 16:45:24,264 - DEBUG - Read 123900 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 16:45:24,559 - DEBUG - Read 124304 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 16:45:24,842 - DEBUG - Read 118013 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 16:45:25,094 - DEBUG - Read 112172 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 16:45:25,357 - DEBUG - Read 118663 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 16:45:25,613 - DEBUG - Read 107207 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 16:45:25,856 - DEBUG - Read 102985 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 16:45:26,101 - DEBUG - Read 101948 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 16:45:26,366 - DEBUG - Read 113482 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 16:45:26,598 - DEBUG - Read 102633 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 16:45:26,841 - DEBUG - Read 104221 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 16:45:27,086 - DEBUG - Read 114288 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 16:45:27,363 - DEBUG - Read 124494 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 16:45:27,596 - DEBUG - Read 95926 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 16:45:27,855 - DEBUG - Read 119281 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 16:45:28,121 - DEBUG - Read 114684 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 16:45:28,344 - DEBUG - Read 98842 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 16:45:28,598 - DEBUG - Read 99063 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 16:45:28,706 - DEBUG - Detected 22867 variants in 98541 reads
2012-10-07 16:45:28,871 - DEBUG - Detected 31080 variants in 106522 reads
2012-10-07 16:45:29,087 - DEBUG - Detected 38556 variants in 123900 reads
2012-10-07 16:45:29,331 - DEBUG - Detected 45147 variants in 124304 reads
2012-10-07 16:45:29,594 - DEBUG - Detected 52314 variants in 118013 reads
2012-10-07 16:45:29,888 - DEBUG - Detected 58882 variants in 112172 reads
2012-10-07 16:45:30,252 - DEBUG - Detected 72691 variants in 118663 reads
2012-10-07 16:45:30,639 - DEBUG - Detected 77666 variants in 107207 reads
2012-10-07 16:45:31,049 - DEBUG - Detected 83677 variants in 102985 reads
2012-10-07 16:45:31,484 - DEBUG - Detected 88468 variants in 101948 reads
2012-10-07 16:45:31,951 - DEBUG - Detected 92669 variants in 113482 reads
2012-10-07 16:45:32,413 - DEBUG - Detected 96388 variants in 102633 reads
2012-10-07 16:45:32,903 - DEBUG - Detected 100323 variants in 104221 reads
2012-10-07 16:45:33,416 - DEBUG - Detected 104487 variants in 114288 reads
2012-10-07 16:45:33,999 - DEBUG - Detected 111337 variants in 124494 reads
2012-10-07 16:45:34,550 - DEBUG - Detected 115298 variants in 95926 reads
2012-10-07 16:45:35,141 - DEBUG - Detected 118901 variants in 119281 reads
2012-10-07 16:45:35,743 - DEBUG - Detected 122947 variants in 114684 reads
2012-10-07 16:45:36,349 - DEBUG - Detected 126868 variants in 98842 reads
2012-10-07 16:45:37,019 - DEBUG - Detected 130997 variants in 99063 reads
2012-10-07 16:45:39,258 - DEBUG - Taking top 8 variants by coverage in window 9:30019859-30019860
2012-10-07 16:45:39,631 - DEBUG - Taking top 8 variants by coverage in window 9:30024971-30024972
2012-10-07 16:45:40,468 - DEBUG - Taking top 8 variants by coverage in window 9:30034302-30034303
2012-10-07 16:45:42,610 - DEBUG - Taking top 8 variants by coverage in window 9:30072381-30072382
2012-10-07 16:45:42,703 - DEBUG - Taking top 8 variants by coverage in window 9:30072952-30072953
2012-10-07 16:45:43,951 - DEBUG - Taking top 8 variants by coverage in window 9:30093881-30093882
2012-10-07 16:45:44,568 - DEBUG - Taking top 8 variants by coverage in window 9:30101763-30101764
2012-10-07 16:45:45,101 - DEBUG - Taking top 8 variants by coverage in window 9:30101866-30101867
2012-10-07 16:45:45,500 - DEBUG - Taking top 8 variants by coverage in window 9:30107039-30107042
2012-10-07 16:45:45,748 - DEBUG - Taking top 8 variants by coverage in window 9:30111777-30111778
2012-10-07 16:45:46,145 - DEBUG - Taking top 8 variants by coverage in window 9:30116987-30116988
2012-10-07 16:45:46,257 - DEBUG - Taking top 8 variants by coverage in window 9:30118476-30118486
2012-10-07 16:45:46,484 - DEBUG - Taking top 8 variants by coverage in window 9:30120900-30120904
2012-10-07 16:45:46,505 - DEBUG - Taking top 8 variants by coverage in window 9:30120905-30120906
2012-10-07 16:45:47,058 - DEBUG - Taking top 8 variants by coverage in window 9:30129053-30129054
2012-10-07 16:45:47,091 - DEBUG - Taking top 8 variants by coverage in window 9:30129099-30129100
2012-10-07 16:45:47,454 - DEBUG - Taking top 8 variants by coverage in window 9:30134601-30134602
2012-10-07 16:45:47,466 - DEBUG - Taking top 8 variants by coverage in window 9:30134603-30134607
2012-10-07 16:45:47,508 - DEBUG - Taking top 8 variants by coverage in window 9:30134635-30134636
2012-10-07 16:45:48,160 - DEBUG - Taking top 8 variants by coverage in window 9:30140640-30140652
2012-10-07 16:45:48,187 - DEBUG - Taking top 8 variants by coverage in window 9:30140684-30140690
2012-10-07 16:45:49,706 - DEBUG - Taking top 8 variants by coverage in window 9:30163903-30163904
2012-10-07 16:45:50,451 - DEBUG - Taking top 8 variants by coverage in window 9:30179753-30179754
2012-10-07 16:45:50,521 - DEBUG - Taking top 8 variants by coverage in window 9:30180085-30180086
2012-10-07 16:45:50,975 - DEBUG - Taking top 8 variants by coverage in window 9:30185449-30185450
2012-10-07 16:45:51,215 - DEBUG - Taking top 8 variants by coverage in window 9:30190132-30190145
2012-10-07 16:45:52,506 - DEBUG - Taking top 8 variants by coverage in window 9:30210436-30210437
2012-10-07 16:45:53,012 - DEBUG - Taking top 8 variants by coverage in window 9:30216103-30216105
2012-10-07 16:45:53,037 - DEBUG - Taking top 8 variants by coverage in window 9:30216117-30216118
2012-10-07 16:45:53,141 - DEBUG - Taking top 8 variants by coverage in window 9:30220443-30220444
2012-10-07 16:45:53,159 - DEBUG - Taking top 8 variants by coverage in window 9:30220467-30220468
2012-10-07 16:45:53,425 - DEBUG - Taking top 8 variants by coverage in window 9:30223090-30223091
2012-10-07 16:45:54,486 - DEBUG - Taking top 8 variants by coverage in window 9:30239262-30239264
2012-10-07 16:45:54,967 - DEBUG - Taking top 8 variants by coverage in window 9:30246533-30246541
2012-10-07 16:45:55,135 - DEBUG - Taking top 8 variants by coverage in window 9:30246569-30246573
2012-10-07 16:45:57,262 - DEBUG - Taking top 8 variants by coverage in window 9:30246593-30246599
2012-10-07 16:45:57,622 - DEBUG - Taking top 8 variants by coverage in window 9:30246619-30246629
2012-10-07 16:45:58,912 - DEBUG - Taking top 8 variants by coverage in window 9:30246673-30246679
2012-10-07 16:46:00,428 - DEBUG - Taking top 8 variants by coverage in window 9:30270459-30270460
2012-10-07 16:46:00,922 - DEBUG - Taking top 8 variants by coverage in window 9:30279215-30279219
2012-10-07 16:46:02,460 - DEBUG - Taking top 8 variants by coverage in window 9:30295771-30295772
2012-10-07 16:46:02,591 - DEBUG - Taking top 8 variants by coverage in window 9:30296299-30296300
2012-10-07 16:46:03,009 - DEBUG - Taking top 8 variants by coverage in window 9:30301988-30301989
2012-10-07 16:46:03,374 - DEBUG - Taking top 8 variants by coverage in window 9:30306045-30306046
2012-10-07 16:46:03,718 - DEBUG - Taking top 8 variants by coverage in window 9:30310001-30310002
2012-10-07 16:46:03,779 - DEBUG - Taking top 8 variants by coverage in window 9:30311072-30311073
2012-10-07 16:46:04,022 - DEBUG - Taking top 8 variants by coverage in window 9:30317442-30317443
2012-10-07 16:46:04,377 - DEBUG - Taking top 8 variants by coverage in window 9:30327146-30327148
2012-10-07 16:46:04,875 - DEBUG - Taking top 8 variants by coverage in window 9:30333981-30333982
2012-10-07 16:46:05,535 - DEBUG - Taking top 8 variants by coverage in window 9:30343064-30343065
2012-10-07 16:46:05,812 - DEBUG - Taking top 8 variants by coverage in window 9:30346879-30346880
2012-10-07 16:46:06,472 - DEBUG - Taking top 8 variants by coverage in window 9:30352813-30352814
2012-10-07 16:46:07,065 - DEBUG - Taking top 8 variants by coverage in window 9:30360733-30360738
2012-10-07 16:46:07,131 - DEBUG - Taking top 8 variants by coverage in window 9:30361130-30361131
2012-10-07 16:46:07,200 - DEBUG - Taking top 8 variants by coverage in window 9:30361856-30361857
2012-10-07 16:46:08,238 - DEBUG - Taking top 8 variants by coverage in window 9:30375634-30375635
2012-10-07 16:46:08,406 - DEBUG - Taking top 8 variants by coverage in window 9:30377367-30377368
2012-10-07 16:46:10,165 - DEBUG - Taking top 8 variants by coverage in window 9:30397077-30397078
2012-10-07 16:46:11,674 - DEBUG - Taking top 8 variants by coverage in window 9:30411597-30411598
2012-10-07 16:46:12,382 - DEBUG - Taking top 8 variants by coverage in window 9:30418797-30418798
2012-10-07 16:46:12,413 - DEBUG - Taking top 8 variants by coverage in window 9:30418809-30418810
2012-10-07 16:46:12,510 - DEBUG - Taking top 8 variants by coverage in window 9:30418929-30418931
2012-10-07 16:46:13,017 - DEBUG - Taking top 8 variants by coverage in window 9:30424278-30424289
2012-10-07 16:46:13,332 - DEBUG - Taking top 8 variants by coverage in window 9:30429114-30429119
2012-10-07 16:46:13,827 - DEBUG - Taking top 8 variants by coverage in window 9:30434850-30434851
2012-10-07 16:46:13,932 - DEBUG - Taking top 8 variants by coverage in window 9:30435026-30435027
2012-10-07 16:46:14,117 - DEBUG - Taking top 8 variants by coverage in window 9:30437528-30437529
2012-10-07 16:46:14,161 - DEBUG - Taking top 8 variants by coverage in window 9:30437534-30437535
2012-10-07 16:46:14,176 - DEBUG - Taking top 8 variants by coverage in window 9:30437537-30437539
2012-10-07 16:46:14,548 - DEBUG - Taking top 8 variants by coverage in window 9:30440985-30440986
2012-10-07 16:46:14,793 - DEBUG - Taking top 8 variants by coverage in window 9:30442861-30442862
2012-10-07 16:46:14,881 - DEBUG - Taking top 8 variants by coverage in window 9:30443714-30443715
2012-10-07 16:46:15,171 - DEBUG - Taking top 8 variants by coverage in window 9:30446343-30446344
2012-10-07 16:46:15,203 - DEBUG - Taking top 8 variants by coverage in window 9:30447005-30447006
2012-10-07 16:46:15,364 - DEBUG - Taking top 8 variants by coverage in window 9:30449406-30449407
2012-10-07 16:46:15,430 - DEBUG - Taking top 8 variants by coverage in window 9:30456533-30456534
2012-10-07 16:46:16,756 - DEBUG - Taking top 8 variants by coverage in window 9:30472932-30472933
2012-10-07 16:46:17,480 - DEBUG - Taking top 8 variants by coverage in window 9:30483543-30483553
2012-10-07 16:46:17,868 - DEBUG - Taking top 8 variants by coverage in window 9:30486853-30486854
2012-10-07 16:46:18,700 - DEBUG - Taking top 8 variants by coverage in window 9:30497995-30497997
2012-10-07 16:46:18,782 - DEBUG - Taking top 8 variants by coverage in window 9:30504280-30504281
2012-10-07 16:46:19,471 - DEBUG - Taking top 8 variants by coverage in window 9:30513789-30513790
2012-10-07 16:46:20,566 - DEBUG - Taking top 8 variants by coverage in window 9:30533223-30533224
2012-10-07 16:46:22,262 - DEBUG - Taking top 8 variants by coverage in window 9:30555035-30555036
2012-10-07 16:46:23,094 - DEBUG - Taking top 8 variants by coverage in window 9:30564190-30564191
2012-10-07 16:46:23,377 - DEBUG - Taking top 8 variants by coverage in window 9:30567958-30567959
2012-10-07 16:46:24,606 - DEBUG - Taking top 8 variants by coverage in window 9:30587816-30587817
2012-10-07 16:46:25,161 - DEBUG - Taking top 8 variants by coverage in window 9:30594061-30594063
2012-10-07 16:46:25,230 - DEBUG - Taking top 8 variants by coverage in window 9:30594083-30594084
2012-10-07 16:46:25,569 - DEBUG - Taking top 8 variants by coverage in window 9:30600196-30600197
2012-10-07 16:46:25,845 - DEBUG - Taking top 8 variants by coverage in window 9:30601652-30601653
2012-10-07 16:46:26,962 - DEBUG - Taking top 8 variants by coverage in window 9:30616465-30616469
2012-10-07 16:46:27,062 - DEBUG - Taking top 8 variants by coverage in window 9:30617687-30617688
2012-10-07 16:46:27,728 - DEBUG - Taking top 8 variants by coverage in window 9:30627934-30627935
2012-10-07 16:46:28,680 - DEBUG - Taking top 8 variants by coverage in window 9:30639584-30639585
2012-10-07 16:46:28,694 - DEBUG - Taking top 8 variants by coverage in window 9:30639596-30639597
2012-10-07 16:46:29,083 - DEBUG - Taking top 8 variants by coverage in window 9:30646211-30646212
2012-10-07 16:46:29,275 - DEBUG - Taking top 8 variants by coverage in window 9:30648381-30648390
2012-10-07 16:46:29,310 - DEBUG - Taking top 8 variants by coverage in window 9:30648482-30648483
2012-10-07 16:46:29,739 - DEBUG - Taking top 8 variants by coverage in window 9:30655203-30655204
2012-10-07 16:46:29,858 - DEBUG - Taking top 8 variants by coverage in window 9:30655255-30655256
2012-10-07 16:46:30,495 - DEBUG - Taking top 8 variants by coverage in window 9:30662764-30662781
2012-10-07 16:46:31,010 - DEBUG - Taking top 8 variants by coverage in window 9:30668315-30668316
2012-10-07 16:46:31,131 - DEBUG - Taking top 8 variants by coverage in window 9:30669446-30669452
2012-10-07 16:46:31,225 - DEBUG - Taking top 8 variants by coverage in window 9:30670228-30670229
2012-10-07 16:46:31,386 - DEBUG - Taking top 8 variants by coverage in window 9:30672321-30672322
2012-10-07 16:46:31,480 - DEBUG - Taking top 8 variants by coverage in window 9:30673374-30673386
2012-10-07 16:46:31,496 - DEBUG - Taking top 8 variants by coverage in window 9:30673407-30673408
2012-10-07 16:46:31,541 - DEBUG - Taking top 8 variants by coverage in window 9:30673580-30673584
2012-10-07 16:46:31,573 - DEBUG - Taking top 8 variants by coverage in window 9:30680174-30680175
2012-10-07 16:46:31,851 - DEBUG - Taking top 8 variants by coverage in window 9:30684670-30684672
2012-10-07 16:46:31,866 - DEBUG - Taking top 8 variants by coverage in window 9:30684674-30684677
2012-10-07 16:46:32,103 - DEBUG - Taking top 8 variants by coverage in window 9:30688691-30688692
2012-10-07 16:46:33,029 - DEBUG - Taking top 8 variants by coverage in window 9:30701858-30701874
2012-10-07 16:46:33,189 - DEBUG - Taking top 8 variants by coverage in window 9:30702119-30702120
2012-10-07 16:46:33,202 - DEBUG - Taking top 8 variants by coverage in window 9:30702135-30702136
2012-10-07 16:46:33,766 - DEBUG - Taking top 8 variants by coverage in window 9:30710716-30710720
2012-10-07 16:46:36,144 - DEBUG - Taking top 8 variants by coverage in window 9:30734033-30734035
2012-10-07 16:46:36,703 - DEBUG - Taking top 8 variants by coverage in window 9:30742365-30742366
2012-10-07 16:46:36,784 - DEBUG - Taking top 8 variants by coverage in window 9:30744000-30744001
2012-10-07 16:46:37,321 - DEBUG - Taking top 8 variants by coverage in window 9:30745984-30745986
2012-10-07 16:46:39,244 - DEBUG - Taking top 8 variants by coverage in window 9:30781376-30781377
2012-10-07 16:46:39,417 - DEBUG - Taking top 8 variants by coverage in window 9:30783726-30783727
2012-10-07 16:46:39,651 - DEBUG - Taking top 8 variants by coverage in window 9:30785007-30785008
2012-10-07 16:46:39,676 - DEBUG - Taking top 8 variants by coverage in window 9:30785009-30785010
2012-10-07 16:46:40,007 - DEBUG - Taking top 8 variants by coverage in window 9:30789770-30789771
2012-10-07 16:46:40,212 - DEBUG - Taking top 8 variants by coverage in window 9:30791341-30791342
2012-10-07 16:46:40,355 - DEBUG - Taking top 8 variants by coverage in window 9:30792559-30792560
2012-10-07 16:46:40,368 - DEBUG - Taking top 8 variants by coverage in window 9:30792650-30792651
2012-10-07 16:46:40,375 - DEBUG - Taking top 8 variants by coverage in window 9:30792666-30792667
2012-10-07 16:46:40,508 - DEBUG - Taking top 8 variants by coverage in window 9:30794551-30794552
2012-10-07 16:46:40,811 - DEBUG - Taking top 8 variants by coverage in window 9:30798237-30798238
2012-10-07 16:46:41,072 - DEBUG - Taking top 8 variants by coverage in window 9:30803631-30803632
2012-10-07 16:46:43,248 - DEBUG - Taking top 8 variants by coverage in window 9:30832991-30832992
2012-10-07 16:46:43,382 - DEBUG - Taking top 8 variants by coverage in window 9:30834855-30834856
2012-10-07 16:46:43,555 - DEBUG - Taking top 8 variants by coverage in window 9:30840531-30840532
2012-10-07 16:46:43,957 - DEBUG - Taking top 8 variants by coverage in window 9:30854282-30854285
2012-10-07 16:46:44,234 - DEBUG - Taking top 8 variants by coverage in window 9:30854338-30854339
2012-10-07 16:46:44,450 - DEBUG - Taking top 8 variants by coverage in window 9:30859238-30859239
2012-10-07 16:46:44,670 - DEBUG - Taking top 8 variants by coverage in window 9:30863282-30863283
2012-10-07 16:46:44,903 - DEBUG - Taking top 8 variants by coverage in window 9:30869463-30869464
2012-10-07 16:46:45,086 - DEBUG - Taking top 8 variants by coverage in window 9:30873653-30873655
2012-10-07 16:46:45,408 - DEBUG - Taking top 8 variants by coverage in window 9:30886659-30886660
2012-10-07 16:46:45,562 - DEBUG - Taking top 8 variants by coverage in window 9:30888868-30888869
2012-10-07 16:46:45,581 - DEBUG - Taking top 8 variants by coverage in window 9:30888869-30888870
2012-10-07 16:46:46,055 - DEBUG - Taking top 8 variants by coverage in window 9:30893829-30893830
2012-10-07 16:46:46,069 - DEBUG - Taking top 8 variants by coverage in window 9:30893848-30893849
2012-10-07 16:46:46,588 - DEBUG - Taking top 8 variants by coverage in window 9:30907223-30907224
2012-10-07 16:46:46,628 - DEBUG - Taking top 8 variants by coverage in window 9:30907249-30907252
2012-10-07 16:46:47,943 - DEBUG - Taking top 8 variants by coverage in window 9:30921201-30921204
2012-10-07 16:46:48,004 - DEBUG - Taking top 8 variants by coverage in window 9:30921414-30921415
2012-10-07 16:46:48,772 - DEBUG - Taking top 8 variants by coverage in window 9:30930410-30930414
2012-10-07 16:46:49,512 - DEBUG - Taking top 8 variants by coverage in window 9:30937631-30937632
2012-10-07 16:46:50,507 - DEBUG - Taking top 8 variants by coverage in window 9:30954332-30954333
2012-10-07 16:46:50,831 - DEBUG - Taking top 8 variants by coverage in window 9:30960434-30960439
2012-10-07 16:46:50,977 - DEBUG - Taking top 8 variants by coverage in window 9:30960488-30960494
2012-10-07 16:46:51,586 - DEBUG - Taking top 8 variants by coverage in window 9:30969537-30969538
2012-10-07 16:46:51,600 - DEBUG - Taking top 8 variants by coverage in window 9:30969587-30969588
2012-10-07 16:46:51,947 - DEBUG - Taking top 8 variants by coverage in window 9:30981069-30981070
2012-10-07 16:46:52,296 - DEBUG - Taking top 8 variants by coverage in window 9:30987171-30987172
2012-10-07 16:46:52,777 - DEBUG - Taking top 8 variants by coverage in window 9:30993324-30993327
2012-10-07 16:46:52,890 - DEBUG - Taking top 8 variants by coverage in window 9:30993422-30993423
2012-10-07 16:46:53,128 - DEBUG - Taking top 8 variants by coverage in window 9:30997257-30997258
2012-10-07 16:46:54,371 - DEBUG - Read 95393 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 16:46:54,618 - DEBUG - Read 104225 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 16:46:54,881 - DEBUG - Read 120368 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 16:46:55,177 - DEBUG - Read 121074 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 16:46:55,454 - DEBUG - Read 114078 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 16:46:55,705 - DEBUG - Read 109543 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 16:46:55,970 - DEBUG - Read 116740 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 16:46:56,223 - DEBUG - Read 104766 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 16:46:56,463 - DEBUG - Read 99927 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 16:46:56,704 - DEBUG - Read 99870 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 16:46:56,967 - DEBUG - Read 112020 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 16:46:57,197 - DEBUG - Read 100305 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 16:46:57,440 - DEBUG - Read 101420 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 16:46:57,681 - DEBUG - Read 111946 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 16:46:57,951 - DEBUG - Read 121290 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 16:46:58,174 - DEBUG - Read 92409 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 16:46:58,427 - DEBUG - Read 117218 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 16:46:58,689 - DEBUG - Read 112273 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 16:46:58,907 - DEBUG - Read 95322 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 16:46:59,142 - DEBUG - Read 96730 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 16:46:59,249 - DEBUG - Detected 24833 variants in 95393 reads
2012-10-07 16:46:59,426 - DEBUG - Detected 38167 variants in 104225 reads
2012-10-07 16:46:59,668 - DEBUG - Detected 48086 variants in 120368 reads
2012-10-07 16:46:59,951 - DEBUG - Detected 55980 variants in 121074 reads
2012-10-07 16:47:00,281 - DEBUG - Detected 62483 variants in 114078 reads
2012-10-07 16:47:00,619 - DEBUG - Detected 68642 variants in 109543 reads
2012-10-07 16:47:00,997 - DEBUG - Detected 82641 variants in 116740 reads
2012-10-07 16:47:01,424 - DEBUG - Detected 88586 variants in 104766 reads
2012-10-07 16:47:01,871 - DEBUG - Detected 94556 variants in 99927 reads
2012-10-07 16:47:02,343 - DEBUG - Detected 99693 variants in 99870 reads
2012-10-07 16:47:02,873 - DEBUG - Detected 104363 variants in 112020 reads
2012-10-07 16:47:03,389 - DEBUG - Detected 108390 variants in 100305 reads
2012-10-07 16:47:03,923 - DEBUG - Detected 112415 variants in 101420 reads
2012-10-07 16:47:04,484 - DEBUG - Detected 116529 variants in 111946 reads
2012-10-07 16:47:05,082 - DEBUG - Detected 124648 variants in 121290 reads
2012-10-07 16:47:05,727 - DEBUG - Detected 128634 variants in 92409 reads
2012-10-07 16:47:06,373 - DEBUG - Detected 132468 variants in 117218 reads
2012-10-07 16:47:07,036 - DEBUG - Detected 136899 variants in 112273 reads
2012-10-07 16:47:07,697 - DEBUG - Detected 140867 variants in 95322 reads
2012-10-07 16:47:08,426 - DEBUG - Detected 144917 variants in 96730 reads
2012-10-07 16:47:09,674 - DEBUG - Taking top 8 variants by coverage in window 9:31004348-31004349
2012-10-07 16:47:11,267 - DEBUG - Taking top 8 variants by coverage in window 9:31031762-31031777
2012-10-07 16:47:11,318 - DEBUG - Taking top 8 variants by coverage in window 9:31031799-31031800
2012-10-07 16:47:11,863 - DEBUG - Taking top 8 variants by coverage in window 9:31043639-31043640
2012-10-07 16:47:12,018 - DEBUG - Taking top 8 variants by coverage in window 9:31044316-31044317
2012-10-07 16:47:12,113 - DEBUG - Taking top 8 variants by coverage in window 9:31044597-31044598
2012-10-07 16:47:12,125 - DEBUG - Taking top 8 variants by coverage in window 9:31044602-31044603
2012-10-07 16:47:12,748 - DEBUG - Taking top 8 variants by coverage in window 9:31050528-31050532
2012-10-07 16:47:12,758 - DEBUG - Taking top 8 variants by coverage in window 9:31050534-31050538
2012-10-07 16:47:13,517 - DEBUG - Taking top 8 variants by coverage in window 9:31054377-31054378
2012-10-07 16:47:14,703 - DEBUG - Taking top 8 variants by coverage in window 9:31069395-31069397
2012-10-07 16:47:16,487 - DEBUG - Taking top 8 variants by coverage in window 9:31093992-31093993
2012-10-07 16:47:17,128 - DEBUG - Taking top 8 variants by coverage in window 9:31099601-31099602
2012-10-07 16:47:17,246 - DEBUG - Taking top 8 variants by coverage in window 9:31101131-31101132
2012-10-07 16:47:17,634 - DEBUG - Taking top 8 variants by coverage in window 9:31108198-31108199
2012-10-07 16:47:17,764 - DEBUG - Taking top 8 variants by coverage in window 9:31110257-31110258
2012-10-07 16:47:18,021 - DEBUG - Taking top 8 variants by coverage in window 9:31114465-31114466
2012-10-07 16:47:18,040 - DEBUG - Taking top 8 variants by coverage in window 9:31114478-31114479
2012-10-07 16:47:18,081 - DEBUG - Taking top 8 variants by coverage in window 9:31114785-31114790
2012-10-07 16:47:18,157 - DEBUG - Taking top 8 variants by coverage in window 9:31114811-31114812
2012-10-07 16:47:18,228 - DEBUG - Taking top 8 variants by coverage in window 9:31114870-31114871
2012-10-07 16:47:18,265 - DEBUG - Taking top 8 variants by coverage in window 9:31114874-31114875
2012-10-07 16:47:18,315 - DEBUG - Taking top 8 variants by coverage in window 9:31114879-31114880
2012-10-07 16:47:18,485 - DEBUG - Taking top 8 variants by coverage in window 9:31115976-31115978
2012-10-07 16:47:18,595 - DEBUG - Taking top 8 variants by coverage in window 9:31116437-31116438
2012-10-07 16:47:19,008 - DEBUG - Taking top 8 variants by coverage in window 9:31119097-31119105
2012-10-07 16:47:19,190 - DEBUG - Taking top 8 variants by coverage in window 9:31119140-31119141
2012-10-07 16:47:19,224 - DEBUG - Taking top 8 variants by coverage in window 9:31119142-31119143
2012-10-07 16:47:20,214 - DEBUG - Taking top 8 variants by coverage in window 9:31134607-31134608
2012-10-07 16:47:20,292 - DEBUG - Taking top 8 variants by coverage in window 9:31135537-31135539
2012-10-07 16:47:20,379 - DEBUG - Taking top 8 variants by coverage in window 9:31135952-31135953
2012-10-07 16:47:21,129 - DEBUG - Taking top 8 variants by coverage in window 9:31148188-31148191
2012-10-07 16:47:21,157 - DEBUG - Taking top 8 variants by coverage in window 9:31148365-31148366
2012-10-07 16:47:21,751 - DEBUG - Taking top 8 variants by coverage in window 9:31161294-31161295
2012-10-07 16:47:22,632 - DEBUG - Taking top 8 variants by coverage in window 9:31172697-31172698
2012-10-07 16:47:22,816 - DEBUG - Taking top 8 variants by coverage in window 9:31173211-31173212
2012-10-07 16:47:22,841 - DEBUG - Taking top 8 variants by coverage in window 9:31173215-31173216
2012-10-07 16:47:23,018 - DEBUG - Taking top 8 variants by coverage in window 9:31174900-31174901
2012-10-07 16:47:23,249 - DEBUG - Taking top 8 variants by coverage in window 9:31177104-31177105
2012-10-07 16:47:23,744 - DEBUG - Taking top 8 variants by coverage in window 9:31189712-31189713
2012-10-07 16:47:24,743 - DEBUG - Taking top 8 variants by coverage in window 9:31207356-31207360
2012-10-07 16:47:24,916 - DEBUG - Taking top 8 variants by coverage in window 9:31209203-31209207
2012-10-07 16:47:24,945 - DEBUG - Taking top 8 variants by coverage in window 9:31209209-31209211
2012-10-07 16:47:25,246 - DEBUG - Taking top 8 variants by coverage in window 9:31210535-31210536
2012-10-07 16:47:25,590 - DEBUG - Taking top 8 variants by coverage in window 9:31216209-31216210
2012-10-07 16:47:26,122 - DEBUG - Taking top 8 variants by coverage in window 9:31225734-31225749
2012-10-07 16:47:26,362 - DEBUG - Taking top 8 variants by coverage in window 9:31226788-31226789
2012-10-07 16:47:26,376 - DEBUG - Taking top 8 variants by coverage in window 9:31226789-31226790
2012-10-07 16:47:27,080 - DEBUG - Taking top 8 variants by coverage in window 9:31239204-31239205
2012-10-07 16:47:27,590 - DEBUG - Taking top 8 variants by coverage in window 9:31243512-31243513
2012-10-07 16:47:27,934 - DEBUG - Taking top 8 variants by coverage in window 9:31247095-31247096
2012-10-07 16:47:28,520 - DEBUG - Taking top 8 variants by coverage in window 9:31252894-31252895
2012-10-07 16:47:28,762 - DEBUG - Taking top 8 variants by coverage in window 9:31255699-31255700
2012-10-07 16:47:29,019 - DEBUG - Taking top 8 variants by coverage in window 9:31258635-31258636
2012-10-07 16:47:29,114 - DEBUG - Taking top 8 variants by coverage in window 9:31258720-31258721
2012-10-07 16:47:29,377 - DEBUG - Taking top 8 variants by coverage in window 9:31260813-31260814
2012-10-07 16:47:29,473 - DEBUG - Taking top 8 variants by coverage in window 9:31261862-31261864
2012-10-07 16:47:29,599 - DEBUG - Taking top 8 variants by coverage in window 9:31262856-31262857
2012-10-07 16:47:29,728 - DEBUG - Taking top 8 variants by coverage in window 9:31263529-31263530
2012-10-07 16:47:29,836 - DEBUG - Taking top 8 variants by coverage in window 9:31264193-31264194
2012-10-07 16:47:30,604 - DEBUG - Taking top 8 variants by coverage in window 9:31266872-31266873
2012-10-07 16:47:31,001 - DEBUG - Taking top 8 variants by coverage in window 9:31272310-31272311
2012-10-07 16:47:31,061 - DEBUG - Taking top 8 variants by coverage in window 9:31273139-31273140
2012-10-07 16:47:31,202 - DEBUG - Taking top 8 variants by coverage in window 9:31274628-31274629
2012-10-07 16:47:31,480 - DEBUG - Taking top 8 variants by coverage in window 9:31276913-31276914
2012-10-07 16:47:31,588 - DEBUG - Taking top 8 variants by coverage in window 9:31278484-31278485
2012-10-07 16:47:31,679 - DEBUG - Taking top 8 variants by coverage in window 9:31279191-31279192
2012-10-07 16:47:31,865 - DEBUG - Taking top 8 variants by coverage in window 9:31279433-31279434
2012-10-07 16:47:32,080 - DEBUG - Taking top 8 variants by coverage in window 9:31282092-31282094
2012-10-07 16:47:32,459 - DEBUG - Taking top 8 variants by coverage in window 9:31289529-31289537
2012-10-07 16:47:34,005 - DEBUG - Taking top 8 variants by coverage in window 9:31305551-31305557
2012-10-07 16:47:34,210 - DEBUG - Taking top 8 variants by coverage in window 9:31308441-31308444
2012-10-07 16:47:35,133 - DEBUG - Taking top 8 variants by coverage in window 9:31321125-31321126
2012-10-07 16:47:35,239 - DEBUG - Taking top 8 variants by coverage in window 9:31321961-31321972
2012-10-07 16:47:35,392 - DEBUG - Taking top 8 variants by coverage in window 9:31323202-31323203
2012-10-07 16:47:35,409 - DEBUG - Taking top 8 variants by coverage in window 9:31323204-31323205
2012-10-07 16:47:35,644 - DEBUG - Taking top 8 variants by coverage in window 9:31324878-31324882
2012-10-07 16:47:35,676 - DEBUG - Taking top 8 variants by coverage in window 9:31325226-31325227
2012-10-07 16:47:35,692 - DEBUG - Taking top 8 variants by coverage in window 9:31325319-31325326
2012-10-07 16:47:35,741 - DEBUG - Taking top 8 variants by coverage in window 9:31325353-31325354
2012-10-07 16:47:35,824 - DEBUG - Taking top 8 variants by coverage in window 9:31325553-31325555
2012-10-07 16:47:35,954 - DEBUG - Taking top 8 variants by coverage in window 9:31326478-31326479
2012-10-07 16:47:36,143 - DEBUG - Taking top 8 variants by coverage in window 9:31328690-31328691
2012-10-07 16:47:36,606 - DEBUG - Taking top 8 variants by coverage in window 9:31334857-31334858
2012-10-07 16:47:36,771 - DEBUG - Taking top 8 variants by coverage in window 9:31336855-31336856
2012-10-07 16:47:37,090 - DEBUG - Taking top 8 variants by coverage in window 9:31340059-31340069
2012-10-07 16:47:38,091 - DEBUG - Taking top 8 variants by coverage in window 9:31351611-31351613
2012-10-07 16:47:38,168 - DEBUG - Taking top 8 variants by coverage in window 9:31351906-31351909
2012-10-07 16:47:38,259 - DEBUG - Taking top 8 variants by coverage in window 9:31352327-31352328
2012-10-07 16:47:38,548 - DEBUG - Taking top 8 variants by coverage in window 9:31353530-31353531
2012-10-07 16:47:39,163 - DEBUG - Taking top 8 variants by coverage in window 9:31361941-31361942
2012-10-07 16:47:39,413 - DEBUG - Taking top 8 variants by coverage in window 9:31363918-31363923
2012-10-07 16:47:39,662 - DEBUG - Taking top 8 variants by coverage in window 9:31365163-31365168
2012-10-07 16:47:39,885 - DEBUG - Taking top 8 variants by coverage in window 9:31365198-31365199
2012-10-07 16:47:40,024 - DEBUG - Taking top 8 variants by coverage in window 9:31365219-31365220
2012-10-07 16:47:40,168 - DEBUG - Taking top 8 variants by coverage in window 9:31365227-31365233
2012-10-07 16:47:41,903 - DEBUG - Taking top 8 variants by coverage in window 9:31377017-31377026
2012-10-07 16:47:41,963 - DEBUG - Taking top 8 variants by coverage in window 9:31377880-31377881
2012-10-07 16:47:42,344 - DEBUG - Taking top 8 variants by coverage in window 9:31381658-31381659
2012-10-07 16:47:42,376 - DEBUG - Taking top 8 variants by coverage in window 9:31381694-31381696
2012-10-07 16:47:42,625 - DEBUG - Taking top 8 variants by coverage in window 9:31384793-31384794
2012-10-07 16:47:43,187 - DEBUG - Taking top 8 variants by coverage in window 9:31392931-31392933
2012-10-07 16:47:43,209 - DEBUG - Taking top 8 variants by coverage in window 9:31392935-31392938
2012-10-07 16:47:43,313 - DEBUG - Taking top 8 variants by coverage in window 9:31392951-31392952
2012-10-07 16:47:43,334 - DEBUG - Taking top 8 variants by coverage in window 9:31392954-31392955
2012-10-07 16:47:43,351 - DEBUG - Taking top 8 variants by coverage in window 9:31392957-31392959
2012-10-07 16:47:43,397 - DEBUG - Taking top 8 variants by coverage in window 9:31392964-31392966
2012-10-07 16:47:43,576 - DEBUG - Taking top 8 variants by coverage in window 9:31392979-31392980
2012-10-07 16:47:43,654 - DEBUG - Taking top 8 variants by coverage in window 9:31392991-31392992
2012-10-07 16:47:43,675 - DEBUG - Taking top 8 variants by coverage in window 9:31392992-31392997
2012-10-07 16:47:43,720 - DEBUG - Taking top 8 variants by coverage in window 9:31393006-31393009
2012-10-07 16:47:43,743 - DEBUG - Taking top 8 variants by coverage in window 9:31393010-31393011
2012-10-07 16:47:43,813 - DEBUG - Taking top 8 variants by coverage in window 9:31393020-31393022
2012-10-07 16:47:43,921 - DEBUG - Taking top 8 variants by coverage in window 9:31393033-31393037
2012-10-07 16:47:44,008 - DEBUG - Taking top 8 variants by coverage in window 9:31393053-31393060
2012-10-07 16:47:44,671 - DEBUG - Taking top 8 variants by coverage in window 9:31397043-31397044
2012-10-07 16:47:45,317 - DEBUG - Taking top 8 variants by coverage in window 9:31404741-31404742
2012-10-07 16:47:45,326 - DEBUG - Taking top 8 variants by coverage in window 9:31404742-31404743
2012-10-07 16:47:45,625 - DEBUG - Taking top 8 variants by coverage in window 9:31410030-31410031
2012-10-07 16:47:47,478 - DEBUG - Taking top 8 variants by coverage in window 9:31436846-31436848
2012-10-07 16:47:48,385 - DEBUG - Taking top 8 variants by coverage in window 9:31444689-31444690
2012-10-07 16:47:48,395 - DEBUG - Taking top 8 variants by coverage in window 9:31444690-31444691
2012-10-07 16:47:48,445 - DEBUG - Taking top 8 variants by coverage in window 9:31444951-31444952
2012-10-07 16:47:48,801 - DEBUG - Taking top 8 variants by coverage in window 9:31447543-31447545
2012-10-07 16:47:48,970 - DEBUG - Taking top 8 variants by coverage in window 9:31448539-31448540
2012-10-07 16:47:49,057 - DEBUG - Taking top 8 variants by coverage in window 9:31449549-31449550
2012-10-07 16:47:49,818 - DEBUG - Taking top 8 variants by coverage in window 9:31460002-31460005
2012-10-07 16:47:50,100 - DEBUG - Taking top 8 variants by coverage in window 9:31464329-31464333
2012-10-07 16:47:50,241 - DEBUG - Taking top 8 variants by coverage in window 9:31465058-31465060
2012-10-07 16:47:51,089 - DEBUG - Taking top 8 variants by coverage in window 9:31472288-31472289
2012-10-07 16:47:53,246 - DEBUG - Taking top 8 variants by coverage in window 9:31500675-31500676
2012-10-07 16:47:53,770 - DEBUG - Taking top 8 variants by coverage in window 9:31507210-31507211
2012-10-07 16:47:53,847 - DEBUG - Taking top 8 variants by coverage in window 9:31509394-31509395
2012-10-07 16:47:54,653 - DEBUG - Taking top 8 variants by coverage in window 9:31518190-31518191
2012-10-07 16:47:54,800 - DEBUG - Taking top 8 variants by coverage in window 9:31520008-31520009
2012-10-07 16:47:54,818 - DEBUG - Taking top 8 variants by coverage in window 9:31520034-31520035
2012-10-07 16:47:54,889 - DEBUG - Taking top 8 variants by coverage in window 9:31520260-31520261
2012-10-07 16:47:54,976 - DEBUG - Taking top 8 variants by coverage in window 9:31520672-31520673
2012-10-07 16:47:55,028 - DEBUG - Taking top 8 variants by coverage in window 9:31520698-31520699
2012-10-07 16:47:55,552 - DEBUG - Taking top 8 variants by coverage in window 9:31526738-31526739
2012-10-07 16:47:56,964 - DEBUG - Taking top 8 variants by coverage in window 9:31540053-31540054
2012-10-07 16:47:56,985 - DEBUG - Taking top 8 variants by coverage in window 9:31540075-31540076
2012-10-07 16:47:57,039 - DEBUG - Taking top 8 variants by coverage in window 9:31540237-31540238
2012-10-07 16:47:57,543 - DEBUG - Taking top 8 variants by coverage in window 9:31541944-31541945
2012-10-07 16:47:57,675 - DEBUG - Taking top 8 variants by coverage in window 9:31542522-31542523
2012-10-07 16:47:57,935 - DEBUG - Taking top 8 variants by coverage in window 9:31550280-31550281
2012-10-07 16:47:58,344 - DEBUG - Taking top 8 variants by coverage in window 9:31554486-31554489
2012-10-07 16:48:00,037 - DEBUG - Taking top 8 variants by coverage in window 9:31572054-31572060
2012-10-07 16:48:00,082 - DEBUG - Taking top 8 variants by coverage in window 9:31572951-31572955
2012-10-07 16:48:00,314 - DEBUG - Taking top 8 variants by coverage in window 9:31575845-31575846
2012-10-07 16:48:02,098 - DEBUG - Taking top 8 variants by coverage in window 9:31590885-31590886
2012-10-07 16:48:02,451 - DEBUG - Taking top 8 variants by coverage in window 9:31595624-31595626
2012-10-07 16:48:02,475 - DEBUG - Taking top 8 variants by coverage in window 9:31595636-31595637
2012-10-07 16:48:02,896 - DEBUG - Taking top 8 variants by coverage in window 9:31600366-31600367
2012-10-07 16:48:02,993 - DEBUG - Taking top 8 variants by coverage in window 9:31601475-31601476
2012-10-07 16:48:03,370 - DEBUG - Taking top 8 variants by coverage in window 9:31608626-31608629
2012-10-07 16:48:03,392 - DEBUG - Taking top 8 variants by coverage in window 9:31608663-31608667
2012-10-07 16:48:03,977 - DEBUG - Taking top 8 variants by coverage in window 9:31613312-31613313
2012-10-07 16:48:04,359 - DEBUG - Taking top 8 variants by coverage in window 9:31620575-31620577
2012-10-07 16:48:04,389 - DEBUG - Taking top 8 variants by coverage in window 9:31621287-31621288
2012-10-07 16:48:05,549 - DEBUG - Taking top 8 variants by coverage in window 9:31642656-31642657
2012-10-07 16:48:05,587 - DEBUG - Taking top 8 variants by coverage in window 9:31642658-31642659
2012-10-07 16:48:05,932 - DEBUG - Taking top 8 variants by coverage in window 9:31642822-31642823
2012-10-07 16:48:06,380 - DEBUG - Taking top 8 variants by coverage in window 9:31650539-31650540
2012-10-07 16:48:06,519 - DEBUG - Taking top 8 variants by coverage in window 9:31652136-31652137
2012-10-07 16:48:06,560 - DEBUG - Taking top 8 variants by coverage in window 9:31653289-31653301
2012-10-07 16:48:06,649 - DEBUG - Taking top 8 variants by coverage in window 9:31654772-31654773
2012-10-07 16:48:06,667 - DEBUG - Taking top 8 variants by coverage in window 9:31654776-31654777
2012-10-07 16:48:06,867 - DEBUG - Taking top 8 variants by coverage in window 9:31656355-31656356
2012-10-07 16:48:07,247 - DEBUG - Taking top 8 variants by coverage in window 9:31664530-31664535
2012-10-07 16:48:07,331 - DEBUG - Taking top 8 variants by coverage in window 9:31664876-31664877
2012-10-07 16:48:07,629 - DEBUG - Taking top 8 variants by coverage in window 9:31671006-31671007
2012-10-07 16:48:07,717 - DEBUG - Taking top 8 variants by coverage in window 9:31672775-31672776
2012-10-07 16:48:07,734 - DEBUG - Taking top 8 variants by coverage in window 9:31672806-31672807
2012-10-07 16:48:07,863 - DEBUG - Taking top 8 variants by coverage in window 9:31675028-31675029
2012-10-07 16:48:08,934 - DEBUG - Taking top 8 variants by coverage in window 9:31699676-31699677
2012-10-07 16:48:09,221 - DEBUG - Taking top 8 variants by coverage in window 9:31704038-31704039
2012-10-07 16:48:09,714 - DEBUG - Taking top 8 variants by coverage in window 9:31710323-31710324
2012-10-07 16:48:10,062 - DEBUG - Taking top 8 variants by coverage in window 9:31713098-31713099
2012-10-07 16:48:10,249 - DEBUG - Taking top 8 variants by coverage in window 9:31716742-31716743
2012-10-07 16:48:10,511 - DEBUG - Taking top 8 variants by coverage in window 9:31722135-31722136
2012-10-07 16:48:10,936 - DEBUG - Taking top 8 variants by coverage in window 9:31725645-31725646
2012-10-07 16:48:11,104 - DEBUG - Taking top 8 variants by coverage in window 9:31726779-31726780
2012-10-07 16:48:11,493 - DEBUG - Taking top 8 variants by coverage in window 9:31730834-31730835
2012-10-07 16:48:11,776 - DEBUG - Taking top 8 variants by coverage in window 9:31735940-31735941
2012-10-07 16:48:12,171 - DEBUG - Taking top 8 variants by coverage in window 9:31739865-31739866
2012-10-07 16:48:12,207 - DEBUG - Taking top 8 variants by coverage in window 9:31739951-31739952
2012-10-07 16:48:13,402 - DEBUG - Taking top 8 variants by coverage in window 9:31754702-31754703
2012-10-07 16:48:13,512 - DEBUG - Taking top 8 variants by coverage in window 9:31755444-31755457
2012-10-07 16:48:13,573 - DEBUG - Taking top 8 variants by coverage in window 9:31755485-31755492
2012-10-07 16:48:13,755 - DEBUG - Taking top 8 variants by coverage in window 9:31757231-31757236
2012-10-07 16:48:14,025 - DEBUG - Taking top 8 variants by coverage in window 9:31760086-31760089
2012-10-07 16:48:14,053 - DEBUG - Taking top 8 variants by coverage in window 9:31760161-31760162
2012-10-07 16:48:14,486 - DEBUG - Taking top 8 variants by coverage in window 9:31764088-31764089
2012-10-07 16:48:14,500 - DEBUG - Taking top 8 variants by coverage in window 9:31764100-31764101
2012-10-07 16:48:14,556 - DEBUG - Taking top 8 variants by coverage in window 9:31764580-31764581
2012-10-07 16:48:14,592 - DEBUG - Taking top 8 variants by coverage in window 9:31764758-31764759
2012-10-07 16:48:14,729 - DEBUG - Taking top 8 variants by coverage in window 9:31766074-31766075
2012-10-07 16:48:14,803 - DEBUG - Taking top 8 variants by coverage in window 9:31766535-31766542
2012-10-07 16:48:16,065 - DEBUG - Taking top 8 variants by coverage in window 9:31781923-31781925
2012-10-07 16:48:16,084 - DEBUG - Taking top 8 variants by coverage in window 9:31781931-31781932
2012-10-07 16:48:16,320 - DEBUG - Taking top 8 variants by coverage in window 9:31784080-31784081
2012-10-07 16:48:16,571 - DEBUG - Taking top 8 variants by coverage in window 9:31786376-31786377
2012-10-07 16:48:16,678 - DEBUG - Taking top 8 variants by coverage in window 9:31787232-31787233
2012-10-07 16:48:16,863 - DEBUG - Taking top 8 variants by coverage in window 9:31789269-31789270
2012-10-07 16:48:16,982 - DEBUG - Taking top 8 variants by coverage in window 9:31790768-31790769
2012-10-07 16:48:17,875 - DEBUG - Taking top 8 variants by coverage in window 9:31803132-31803144
2012-10-07 16:48:18,748 - DEBUG - Taking top 8 variants by coverage in window 9:31815244-31815245
2012-10-07 16:48:19,196 - DEBUG - Taking top 8 variants by coverage in window 9:31824526-31824528
2012-10-07 16:48:19,225 - DEBUG - Taking top 8 variants by coverage in window 9:31824553-31824554
2012-10-07 16:48:19,708 - DEBUG - Taking top 8 variants by coverage in window 9:31831050-31831053
2012-10-07 16:48:20,046 - DEBUG - Taking top 8 variants by coverage in window 9:31835101-31835102
2012-10-07 16:48:20,219 - DEBUG - Taking top 8 variants by coverage in window 9:31838164-31838165
2012-10-07 16:48:20,235 - DEBUG - Taking top 8 variants by coverage in window 9:31838209-31838210
2012-10-07 16:48:20,474 - DEBUG - Taking top 8 variants by coverage in window 9:31843511-31843513
2012-10-07 16:48:20,852 - DEBUG - Taking top 8 variants by coverage in window 9:31853325-31853326
2012-10-07 16:48:20,914 - DEBUG - Taking top 8 variants by coverage in window 9:31853418-31853419
2012-10-07 16:48:21,739 - DEBUG - Taking top 8 variants by coverage in window 9:31871022-31871030
2012-10-07 16:48:21,786 - DEBUG - Taking top 8 variants by coverage in window 9:31871056-31871060
2012-10-07 16:48:21,965 - DEBUG - Taking top 8 variants by coverage in window 9:31876057-31876064
2012-10-07 16:48:22,005 - DEBUG - Taking top 8 variants by coverage in window 9:31876069-31876070
2012-10-07 16:48:22,531 - DEBUG - Taking top 8 variants by coverage in window 9:31883630-31883634
2012-10-07 16:48:22,550 - DEBUG - Taking top 8 variants by coverage in window 9:31883885-31883887
2012-10-07 16:48:22,786 - DEBUG - Taking top 8 variants by coverage in window 9:31891052-31891053
2012-10-07 16:48:23,546 - DEBUG - Taking top 8 variants by coverage in window 9:31906265-31906267
2012-10-07 16:48:23,699 - DEBUG - Taking top 8 variants by coverage in window 9:31908608-31908609
2012-10-07 16:48:24,198 - DEBUG - Taking top 8 variants by coverage in window 9:31912920-31912926
2012-10-07 16:48:24,606 - DEBUG - Taking top 8 variants by coverage in window 9:31918115-31918116
2012-10-07 16:48:25,440 - DEBUG - Taking top 8 variants by coverage in window 9:31935038-31935039
2012-10-07 16:48:25,444 - DEBUG - Taking top 8 variants by coverage in window 9:31935039-31935040
2012-10-07 16:48:25,864 - DEBUG - Taking top 8 variants by coverage in window 9:31944466-31944467
2012-10-07 16:48:26,446 - DEBUG - Taking top 8 variants by coverage in window 9:31958138-31958155
2012-10-07 16:48:26,478 - DEBUG - Taking top 8 variants by coverage in window 9:31958214-31958215
2012-10-07 16:48:27,232 - DEBUG - Taking top 8 variants by coverage in window 9:31968666-31968667
2012-10-07 16:48:27,399 - DEBUG - Taking top 8 variants by coverage in window 9:31970014-31970038
2012-10-07 16:48:28,302 - DEBUG - Taking top 8 variants by coverage in window 9:31982410-31982411
2012-10-07 16:48:28,611 - DEBUG - Taking top 8 variants by coverage in window 9:31986072-31986077
2012-10-07 16:48:28,853 - DEBUG - Taking top 8 variants by coverage in window 9:31988082-31988083
2012-10-07 16:48:28,897 - DEBUG - Taking top 8 variants by coverage in window 9:31988101-31988102
2012-10-07 16:48:29,611 - DEBUG - Taking top 8 variants by coverage in window 9:31996132-31996133
2012-10-07 16:48:29,745 - DEBUG - Taking top 8 variants by coverage in window 9:31997309-31997311
2012-10-07 16:48:30,880 - DEBUG - Read 97118 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 16:48:31,125 - DEBUG - Read 103812 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 16:48:31,388 - DEBUG - Read 121191 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 16:48:31,682 - DEBUG - Read 121482 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 16:48:31,962 - DEBUG - Read 115054 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 16:48:32,209 - DEBUG - Read 108600 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 16:48:32,467 - DEBUG - Read 115218 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 16:48:32,737 - DEBUG - Read 105548 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 16:48:32,977 - DEBUG - Read 100381 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 16:48:33,218 - DEBUG - Read 99284 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 16:48:33,479 - DEBUG - Read 111287 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 16:48:33,713 - DEBUG - Read 101122 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 16:48:33,967 - DEBUG - Read 101423 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 16:48:34,213 - DEBUG - Read 112842 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 16:48:34,485 - DEBUG - Read 121798 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 16:48:34,710 - DEBUG - Read 91376 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 16:48:34,963 - DEBUG - Read 117100 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 16:48:35,219 - DEBUG - Read 110566 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 16:48:35,447 - DEBUG - Read 98480 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 16:48:35,686 - DEBUG - Read 96634 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 16:48:35,793 - DEBUG - Detected 22582 variants in 97118 reads
2012-10-07 16:48:35,961 - DEBUG - Detected 33618 variants in 103812 reads
2012-10-07 16:48:36,188 - DEBUG - Detected 41187 variants in 121191 reads
2012-10-07 16:48:36,450 - DEBUG - Detected 49315 variants in 121482 reads
2012-10-07 16:48:36,752 - DEBUG - Detected 56471 variants in 115054 reads
2012-10-07 16:48:37,064 - DEBUG - Detected 62052 variants in 108600 reads
2012-10-07 16:48:37,417 - DEBUG - Detected 74317 variants in 115218 reads
2012-10-07 16:48:37,815 - DEBUG - Detected 79567 variants in 105548 reads
2012-10-07 16:48:38,232 - DEBUG - Detected 85268 variants in 100381 reads
2012-10-07 16:48:38,676 - DEBUG - Detected 89670 variants in 99284 reads
2012-10-07 16:48:39,180 - DEBUG - Detected 94041 variants in 111287 reads
2012-10-07 16:48:39,661 - DEBUG - Detected 97945 variants in 101122 reads
2012-10-07 16:48:40,160 - DEBUG - Detected 101793 variants in 101423 reads
2012-10-07 16:48:40,684 - DEBUG - Detected 106046 variants in 112842 reads
2012-10-07 16:48:41,215 - DEBUG - Detected 113415 variants in 121798 reads
2012-10-07 16:48:41,750 - DEBUG - Detected 117270 variants in 91376 reads
2012-10-07 16:48:42,372 - DEBUG - Detected 120837 variants in 117100 reads
2012-10-07 16:48:42,958 - DEBUG - Detected 124894 variants in 110566 reads
2012-10-07 16:48:43,553 - DEBUG - Detected 128810 variants in 98480 reads
2012-10-07 16:48:44,165 - DEBUG - Detected 132736 variants in 96634 reads
2012-10-07 16:48:45,064 - DEBUG - Taking top 8 variants by coverage in window 9:32000831-32000832
2012-10-07 16:48:45,651 - DEBUG - Taking top 8 variants by coverage in window 9:32010087-32010088
2012-10-07 16:48:46,259 - DEBUG - Taking top 8 variants by coverage in window 9:32020638-32020641
2012-10-07 16:48:46,382 - DEBUG - Taking top 8 variants by coverage in window 9:32020840-32020841
2012-10-07 16:48:47,107 - DEBUG - Taking top 8 variants by coverage in window 9:32038909-32038911
2012-10-07 16:48:47,762 - DEBUG - Taking top 8 variants by coverage in window 9:32051547-32051548
2012-10-07 16:48:47,895 - DEBUG - Taking top 8 variants by coverage in window 9:32054311-32054312
2012-10-07 16:48:48,007 - DEBUG - Taking top 8 variants by coverage in window 9:32057055-32057056
2012-10-07 16:48:49,236 - DEBUG - Taking top 8 variants by coverage in window 9:32081884-32081885
2012-10-07 16:48:49,320 - DEBUG - Taking top 8 variants by coverage in window 9:32081912-32081913
2012-10-07 16:48:49,379 - DEBUG - Taking top 8 variants by coverage in window 9:32081934-32081935
2012-10-07 16:48:49,563 - DEBUG - Taking top 8 variants by coverage in window 9:32082081-32082087
2012-10-07 16:48:50,144 - DEBUG - Taking top 8 variants by coverage in window 9:32085551-32085558
2012-10-07 16:48:50,182 - DEBUG - Taking top 8 variants by coverage in window 9:32085583-32085584
2012-10-07 16:48:50,767 - DEBUG - Taking top 8 variants by coverage in window 9:32091914-32091915
2012-10-07 16:48:50,776 - DEBUG - Taking top 8 variants by coverage in window 9:32091927-32091929
2012-10-07 16:48:50,830 - DEBUG - Taking top 8 variants by coverage in window 9:32092160-32092163
2012-10-07 16:48:50,929 - DEBUG - Taking top 8 variants by coverage in window 9:32092611-32092612
2012-10-07 16:48:51,108 - DEBUG - Taking top 8 variants by coverage in window 9:32093729-32093730
2012-10-07 16:48:51,148 - DEBUG - Taking top 8 variants by coverage in window 9:32093809-32093810
2012-10-07 16:48:51,362 - DEBUG - Taking top 8 variants by coverage in window 9:32094412-32094418
2012-10-07 16:48:52,063 - DEBUG - Taking top 8 variants by coverage in window 9:32094496-32094504
2012-10-07 16:48:52,195 - DEBUG - Taking top 8 variants by coverage in window 9:32094540-32094546
2012-10-07 16:48:52,405 - DEBUG - Taking top 8 variants by coverage in window 9:32094548-32094552
2012-10-07 16:48:52,462 - DEBUG - Taking top 8 variants by coverage in window 9:32094562-32094568
2012-10-07 16:48:52,529 - DEBUG - Taking top 8 variants by coverage in window 9:32094570-32094575
2012-10-07 16:48:52,667 - DEBUG - Taking top 8 variants by coverage in window 9:32094618-32094622
2012-10-07 16:48:52,704 - DEBUG - Taking top 8 variants by coverage in window 9:32094624-32094632
2012-10-07 16:48:53,197 - DEBUG - Taking top 8 variants by coverage in window 9:32095070-32095071
2012-10-07 16:48:53,216 - DEBUG - Taking top 8 variants by coverage in window 9:32095073-32095076
2012-10-07 16:48:53,498 - DEBUG - Taking top 8 variants by coverage in window 9:32097160-32097165
2012-10-07 16:48:54,290 - DEBUG - Taking top 8 variants by coverage in window 9:32105790-32105791
2012-10-07 16:48:54,701 - DEBUG - Taking top 8 variants by coverage in window 9:32109853-32109854
2012-10-07 16:48:54,726 - DEBUG - Taking top 8 variants by coverage in window 9:32109858-32109859
2012-10-07 16:48:55,133 - DEBUG - Taking top 8 variants by coverage in window 9:32114442-32114443
2012-10-07 16:48:55,570 - DEBUG - Taking top 8 variants by coverage in window 9:32117529-32117530
2012-10-07 16:48:56,106 - DEBUG - Taking top 8 variants by coverage in window 9:32123147-32123148
2012-10-07 16:48:56,125 - DEBUG - Taking top 8 variants by coverage in window 9:32123163-32123164
2012-10-07 16:48:56,134 - DEBUG - Taking top 8 variants by coverage in window 9:32123164-32123165
2012-10-07 16:48:56,178 - DEBUG - Taking top 8 variants by coverage in window 9:32123328-32123329
2012-10-07 16:48:56,379 - DEBUG - Taking top 8 variants by coverage in window 9:32125622-32125623
2012-10-07 16:48:57,590 - DEBUG - Taking top 8 variants by coverage in window 9:32143194-32143196
2012-10-07 16:48:57,723 - DEBUG - Taking top 8 variants by coverage in window 9:32143971-32143972
2012-10-07 16:48:57,828 - DEBUG - Taking top 8 variants by coverage in window 9:32144868-32144869
2012-10-07 16:48:57,869 - DEBUG - Taking top 8 variants by coverage in window 9:32145009-32145010
2012-10-07 16:48:58,226 - DEBUG - Taking top 8 variants by coverage in window 9:32149444-32149445
2012-10-07 16:48:58,626 - DEBUG - Taking top 8 variants by coverage in window 9:32154914-32154915
2012-10-07 16:48:58,861 - DEBUG - Taking top 8 variants by coverage in window 9:32157301-32157303
2012-10-07 16:48:58,931 - DEBUG - Taking top 8 variants by coverage in window 9:32157608-32157612
2012-10-07 16:48:59,912 - DEBUG - Taking top 8 variants by coverage in window 9:32169331-32169332
2012-10-07 16:48:59,937 - DEBUG - Taking top 8 variants by coverage in window 9:32169394-32169396
2012-10-07 16:48:59,989 - DEBUG - Taking top 8 variants by coverage in window 9:32169476-32169477
2012-10-07 16:49:00,428 - DEBUG - Taking top 8 variants by coverage in window 9:32175748-32175749
2012-10-07 16:49:00,636 - DEBUG - Taking top 8 variants by coverage in window 9:32179797-32179798
2012-10-07 16:49:01,026 - DEBUG - Taking top 8 variants by coverage in window 9:32185489-32185490
2012-10-07 16:49:01,832 - DEBUG - Taking top 8 variants by coverage in window 9:32196972-32196973
2012-10-07 16:49:02,074 - DEBUG - Taking top 8 variants by coverage in window 9:32198928-32198929
2012-10-07 16:49:02,126 - DEBUG - Taking top 8 variants by coverage in window 9:32199632-32199633
2012-10-07 16:49:02,240 - DEBUG - Taking top 8 variants by coverage in window 9:32202306-32202307
2012-10-07 16:49:02,658 - DEBUG - Taking top 8 variants by coverage in window 9:32216496-32216497
2012-10-07 16:49:02,707 - DEBUG - Taking top 8 variants by coverage in window 9:32218572-32218575
2012-10-07 16:49:03,027 - DEBUG - Taking top 8 variants by coverage in window 9:32222295-32222296
2012-10-07 16:49:03,704 - DEBUG - Taking top 8 variants by coverage in window 9:32238661-32238662
2012-10-07 16:49:04,570 - DEBUG - Taking top 8 variants by coverage in window 9:32252129-32252133
2012-10-07 16:49:05,304 - DEBUG - Taking top 8 variants by coverage in window 9:32259541-32259550
2012-10-07 16:49:05,591 - DEBUG - Taking top 8 variants by coverage in window 9:32262672-32262673
2012-10-07 16:49:05,925 - DEBUG - Taking top 8 variants by coverage in window 9:32264954-32264955
2012-10-07 16:49:06,120 - DEBUG - Taking top 8 variants by coverage in window 9:32269265-32269269
2012-10-07 16:49:06,494 - DEBUG - Taking top 8 variants by coverage in window 9:32275618-32275620
2012-10-07 16:49:08,661 - DEBUG - Taking top 8 variants by coverage in window 9:32303125-32303126
2012-10-07 16:49:10,026 - DEBUG - Taking top 8 variants by coverage in window 9:32322636-32322637
2012-10-07 16:49:10,924 - DEBUG - Taking top 8 variants by coverage in window 9:32334306-32334310
2012-10-07 16:49:11,370 - DEBUG - Taking top 8 variants by coverage in window 9:32340662-32340663
2012-10-07 16:49:11,651 - DEBUG - Taking top 8 variants by coverage in window 9:32343703-32343704
2012-10-07 16:49:11,733 - DEBUG - Taking top 8 variants by coverage in window 9:32343709-32343712
2012-10-07 16:49:12,015 - DEBUG - Taking top 8 variants by coverage in window 9:32343793-32343797
2012-10-07 16:49:12,184 - DEBUG - Taking top 8 variants by coverage in window 9:32345104-32345107
2012-10-07 16:49:13,600 - DEBUG - Taking top 8 variants by coverage in window 9:32374599-32374600
2012-10-07 16:49:14,514 - DEBUG - Taking top 8 variants by coverage in window 9:32391857-32391859
2012-10-07 16:49:14,651 - DEBUG - Taking top 8 variants by coverage in window 9:32393235-32393237
2012-10-07 16:49:14,808 - DEBUG - Taking top 8 variants by coverage in window 9:32393887-32393888
2012-10-07 16:49:14,825 - DEBUG - Taking top 8 variants by coverage in window 9:32393988-32393999
2012-10-07 16:49:15,279 - DEBUG - Taking top 8 variants by coverage in window 9:32396840-32396844
2012-10-07 16:49:16,803 - DEBUG - Taking top 8 variants by coverage in window 9:32415170-32415171
2012-10-07 16:49:17,035 - DEBUG - Taking top 8 variants by coverage in window 9:32418797-32418798
2012-10-07 16:49:17,678 - DEBUG - Taking top 8 variants by coverage in window 9:32428705-32428715
2012-10-07 16:49:17,714 - DEBUG - Taking top 8 variants by coverage in window 9:32428784-32428790
2012-10-07 16:49:17,835 - DEBUG - Taking top 8 variants by coverage in window 9:32429617-32429626
2012-10-07 16:49:18,627 - DEBUG - Taking top 8 variants by coverage in window 9:32440855-32440856
2012-10-07 16:49:19,231 - DEBUG - Taking top 8 variants by coverage in window 9:32448420-32448421
2012-10-07 16:49:19,672 - DEBUG - Taking top 8 variants by coverage in window 9:32454333-32454334
2012-10-07 16:49:19,843 - DEBUG - Taking top 8 variants by coverage in window 9:32457652-32457661
2012-10-07 16:49:20,505 - DEBUG - Taking top 8 variants by coverage in window 9:32462564-32462575
2012-10-07 16:49:23,208 - DEBUG - Taking top 8 variants by coverage in window 9:32505769-32505770
2012-10-07 16:49:23,733 - DEBUG - Taking top 8 variants by coverage in window 9:32515456-32515457
2012-10-07 16:49:25,218 - DEBUG - Taking top 8 variants by coverage in window 9:32535966-32535967
2012-10-07 16:49:26,602 - DEBUG - Taking top 8 variants by coverage in window 9:32554779-32554780
2012-10-07 16:49:27,218 - DEBUG - Taking top 8 variants by coverage in window 9:32564075-32564076
2012-10-07 16:49:28,214 - DEBUG - Taking top 8 variants by coverage in window 9:32576758-32576764
2012-10-07 16:49:28,365 - DEBUG - Taking top 8 variants by coverage in window 9:32577455-32577457
2012-10-07 16:49:28,640 - DEBUG - Taking top 8 variants by coverage in window 9:32579578-32579579
2012-10-07 16:49:29,152 - DEBUG - Taking top 8 variants by coverage in window 9:32583799-32583800
2012-10-07 16:49:29,167 - DEBUG - Taking top 8 variants by coverage in window 9:32583807-32583808
2012-10-07 16:49:29,667 - DEBUG - Taking top 8 variants by coverage in window 9:32588192-32588193
2012-10-07 16:49:29,947 - DEBUG - Taking top 8 variants by coverage in window 9:32591503-32591504
2012-10-07 16:49:30,062 - DEBUG - Taking top 8 variants by coverage in window 9:32592308-32592309
2012-10-07 16:49:30,350 - DEBUG - Taking top 8 variants by coverage in window 9:32596566-32596572
2012-10-07 16:49:30,371 - DEBUG - Taking top 8 variants by coverage in window 9:32596582-32596583
2012-10-07 16:49:31,329 - DEBUG - Taking top 8 variants by coverage in window 9:32608276-32608282
2012-10-07 16:49:31,360 - DEBUG - Taking top 8 variants by coverage in window 9:32608304-32608305
2012-10-07 16:49:32,849 - DEBUG - Taking top 8 variants by coverage in window 9:32628808-32628809
2012-10-07 16:49:33,042 - DEBUG - Taking top 8 variants by coverage in window 9:32630510-32630511
2012-10-07 16:49:33,194 - DEBUG - Taking top 8 variants by coverage in window 9:32632367-32632368
2012-10-07 16:49:33,443 - DEBUG - Taking top 8 variants by coverage in window 9:32633975-32633977
2012-10-07 16:49:34,400 - DEBUG - Taking top 8 variants by coverage in window 9:32642741-32642742
2012-10-07 16:49:34,609 - DEBUG - Taking top 8 variants by coverage in window 9:32645327-32645328
2012-10-07 16:49:35,000 - DEBUG - Taking top 8 variants by coverage in window 9:32654088-32654093
2012-10-07 16:49:35,154 - DEBUG - Taking top 8 variants by coverage in window 9:32655296-32655297
2012-10-07 16:49:36,285 - DEBUG - Taking top 8 variants by coverage in window 9:32667278-32667279
2012-10-07 16:49:37,760 - DEBUG - Taking top 8 variants by coverage in window 9:32676225-32676226
2012-10-07 16:49:40,406 - DEBUG - Taking top 8 variants by coverage in window 9:32716871-32716872
2012-10-07 16:49:40,570 - DEBUG - Taking top 8 variants by coverage in window 9:32718129-32718130
2012-10-07 16:49:40,927 - DEBUG - Taking top 8 variants by coverage in window 9:32721498-32721499
2012-10-07 16:49:41,203 - DEBUG - Taking top 8 variants by coverage in window 9:32723683-32723685
2012-10-07 16:49:41,609 - DEBUG - Taking top 8 variants by coverage in window 9:32727781-32727787
2012-10-07 16:49:44,034 - DEBUG - Taking top 8 variants by coverage in window 9:32729983-32729984
2012-10-07 16:49:45,073 - DEBUG - Taking top 8 variants by coverage in window 9:32743522-32743523
2012-10-07 16:49:45,826 - DEBUG - Taking top 8 variants by coverage in window 9:32750396-32750397
2012-10-07 16:49:46,095 - DEBUG - Taking top 8 variants by coverage in window 9:32753459-32753460
2012-10-07 16:49:46,845 - DEBUG - Taking top 8 variants by coverage in window 9:32759760-32759761
2012-10-07 16:49:46,938 - DEBUG - Taking top 8 variants by coverage in window 9:32760680-32760681
2012-10-07 16:49:47,058 - DEBUG - Taking top 8 variants by coverage in window 9:32766699-32766700
2012-10-07 16:49:47,575 - DEBUG - Taking top 8 variants by coverage in window 9:32774377-32774378
2012-10-07 16:49:47,949 - DEBUG - Taking top 8 variants by coverage in window 9:32780943-32780951
2012-10-07 16:49:47,968 - DEBUG - Taking top 8 variants by coverage in window 9:32780991-32780992
2012-10-07 16:49:48,927 - DEBUG - Taking top 8 variants by coverage in window 9:32791706-32791707
2012-10-07 16:49:50,079 - DEBUG - Taking top 8 variants by coverage in window 9:32806761-32806762
2012-10-07 16:49:50,146 - DEBUG - Taking top 8 variants by coverage in window 9:32807295-32807296
2012-10-07 16:49:50,292 - DEBUG - Taking top 8 variants by coverage in window 9:32810436-32810437
2012-10-07 16:49:50,745 - DEBUG - Taking top 8 variants by coverage in window 9:32817365-32817366
2012-10-07 16:49:51,936 - DEBUG - Taking top 8 variants by coverage in window 9:32831576-32831577
2012-10-07 16:49:51,944 - DEBUG - Taking top 8 variants by coverage in window 9:32831581-32831582
2012-10-07 16:49:52,018 - DEBUG - Taking top 8 variants by coverage in window 9:32832018-32832023
2012-10-07 16:49:52,061 - DEBUG - Taking top 8 variants by coverage in window 9:32832121-32832122
2012-10-07 16:49:52,092 - DEBUG - Taking top 8 variants by coverage in window 9:32832217-32832218
2012-10-07 16:49:52,283 - DEBUG - Taking top 8 variants by coverage in window 9:32833953-32833954
2012-10-07 16:49:52,469 - DEBUG - Taking top 8 variants by coverage in window 9:32836086-32836087
2012-10-07 16:49:52,821 - DEBUG - Taking top 8 variants by coverage in window 9:32841262-32841268
2012-10-07 16:49:52,998 - DEBUG - Taking top 8 variants by coverage in window 9:32843611-32843612
2012-10-07 16:49:53,121 - DEBUG - Taking top 8 variants by coverage in window 9:32844436-32844440
2012-10-07 16:49:53,351 - DEBUG - Taking top 8 variants by coverage in window 9:32846652-32846653
2012-10-07 16:49:53,470 - DEBUG - Taking top 8 variants by coverage in window 9:32848195-32848196
2012-10-07 16:49:53,766 - DEBUG - Taking top 8 variants by coverage in window 9:32858381-32858382
2012-10-07 16:49:53,938 - DEBUG - Taking top 8 variants by coverage in window 9:32861141-32861142
2012-10-07 16:49:54,455 - DEBUG - Taking top 8 variants by coverage in window 9:32870177-32870179
2012-10-07 16:49:54,762 - DEBUG - Taking top 8 variants by coverage in window 9:32870180-32870181
2012-10-07 16:49:54,825 - DEBUG - Taking top 8 variants by coverage in window 9:32870904-32870905
2012-10-07 16:49:55,061 - DEBUG - Taking top 8 variants by coverage in window 9:32874674-32874687
2012-10-07 16:49:55,998 - DEBUG - Taking top 8 variants by coverage in window 9:32887832-32887833
2012-10-07 16:49:56,051 - DEBUG - Taking top 8 variants by coverage in window 9:32887841-32887842
2012-10-07 16:49:56,068 - DEBUG - Taking top 8 variants by coverage in window 9:32887844-32887847
2012-10-07 16:49:56,428 - DEBUG - Taking top 8 variants by coverage in window 9:32892027-32892028
2012-10-07 16:49:56,458 - DEBUG - Taking top 8 variants by coverage in window 9:32892354-32892355
2012-10-07 16:49:56,552 - DEBUG - Taking top 8 variants by coverage in window 9:32893349-32893362
2012-10-07 16:49:56,884 - DEBUG - Taking top 8 variants by coverage in window 9:32896054-32896055
2012-10-07 16:49:56,947 - DEBUG - Taking top 8 variants by coverage in window 9:32896133-32896134
2012-10-07 16:49:57,131 - DEBUG - Taking top 8 variants by coverage in window 9:32897478-32897479
2012-10-07 16:49:58,038 - DEBUG - Taking top 8 variants by coverage in window 9:32906817-32906818
2012-10-07 16:49:58,069 - DEBUG - Taking top 8 variants by coverage in window 9:32906886-32906893
2012-10-07 16:49:58,104 - DEBUG - Taking top 8 variants by coverage in window 9:32906930-32906944
2012-10-07 16:49:58,923 - DEBUG - Taking top 8 variants by coverage in window 9:32916179-32916180
2012-10-07 16:49:59,093 - DEBUG - Taking top 8 variants by coverage in window 9:32917317-32917318
2012-10-07 16:49:59,586 - DEBUG - Taking top 8 variants by coverage in window 9:32921810-32921812
2012-10-07 16:50:01,312 - DEBUG - Taking top 8 variants by coverage in window 9:32945919-32945920
2012-10-07 16:50:01,391 - DEBUG - Taking top 8 variants by coverage in window 9:32948443-32948445
2012-10-07 16:50:01,867 - DEBUG - Taking top 8 variants by coverage in window 9:32968481-32968493
2012-10-07 16:50:01,875 - DEBUG - Taking top 8 variants by coverage in window 9:32968505-32968506
2012-10-07 16:50:02,645 - DEBUG - Taking top 8 variants by coverage in window 9:32978716-32978717
2012-10-07 16:50:02,862 - DEBUG - Taking top 8 variants by coverage in window 9:32981779-32981804
2012-10-07 16:50:03,478 - DEBUG - Taking top 8 variants by coverage in window 9:32989776-32989777
2012-10-07 16:50:03,532 - DEBUG - Taking top 8 variants by coverage in window 9:32989837-32989838
2012-10-07 16:50:04,101 - DEBUG - Taking top 8 variants by coverage in window 9:32997599-32997600
2012-10-07 16:50:05,222 - DEBUG - Read 87251 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 16:50:05,440 - DEBUG - Read 94091 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 16:50:05,679 - DEBUG - Read 111300 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 16:50:05,938 - DEBUG - Read 109047 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 16:50:06,190 - DEBUG - Read 106180 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 16:50:06,417 - DEBUG - Read 101111 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 16:50:06,655 - DEBUG - Read 107240 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 16:50:06,881 - DEBUG - Read 93124 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 16:50:07,092 - DEBUG - Read 89488 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 16:50:07,315 - DEBUG - Read 94218 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 16:50:07,607 - DEBUG - Read 103078 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 16:50:07,812 - DEBUG - Read 90299 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 16:50:08,028 - DEBUG - Read 91165 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 16:50:08,252 - DEBUG - Read 100772 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 16:50:08,495 - DEBUG - Read 109869 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 16:50:08,700 - DEBUG - Read 84760 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 16:50:08,929 - DEBUG - Read 106335 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 16:50:09,169 - DEBUG - Read 104133 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 16:50:09,441 - DEBUG - Read 83222 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 16:50:09,654 - DEBUG - Read 88384 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 16:50:09,752 - DEBUG - Detected 19975 variants in 87251 reads
2012-10-07 16:50:09,899 - DEBUG - Detected 28598 variants in 94091 reads
2012-10-07 16:50:10,095 - DEBUG - Detected 34663 variants in 111300 reads
2012-10-07 16:50:10,314 - DEBUG - Detected 40688 variants in 109047 reads
2012-10-07 16:50:10,556 - DEBUG - Detected 47104 variants in 106180 reads
2012-10-07 16:50:10,822 - DEBUG - Detected 52844 variants in 101111 reads
2012-10-07 16:50:11,123 - DEBUG - Detected 64382 variants in 107240 reads
2012-10-07 16:50:11,467 - DEBUG - Detected 69422 variants in 93124 reads
2012-10-07 16:50:11,859 - DEBUG - Detected 74282 variants in 89488 reads
2012-10-07 16:50:12,252 - DEBUG - Detected 78200 variants in 94218 reads
2012-10-07 16:50:12,661 - DEBUG - Detected 82970 variants in 103078 reads
2012-10-07 16:50:13,084 - DEBUG - Detected 86066 variants in 90299 reads
2012-10-07 16:50:13,523 - DEBUG - Detected 90182 variants in 91165 reads
2012-10-07 16:50:13,988 - DEBUG - Detected 94494 variants in 100772 reads
2012-10-07 16:50:14,479 - DEBUG - Detected 100423 variants in 109869 reads
2012-10-07 16:50:15,018 - DEBUG - Detected 103880 variants in 84760 reads
2012-10-07 16:50:15,553 - DEBUG - Detected 107437 variants in 106335 reads
2012-10-07 16:50:16,095 - DEBUG - Detected 110910 variants in 104133 reads
2012-10-07 16:50:16,637 - DEBUG - Detected 114076 variants in 83222 reads
2012-10-07 16:50:17,195 - DEBUG - Detected 118093 variants in 88384 reads
2012-10-07 16:50:19,527 - DEBUG - Taking top 8 variants by coverage in window 9:33021208-33021209
2012-10-07 16:50:19,814 - DEBUG - Taking top 8 variants by coverage in window 9:33025183-33025185
2012-10-07 16:50:19,927 - DEBUG - Taking top 8 variants by coverage in window 9:33027741-33027742
2012-10-07 16:50:19,944 - DEBUG - Taking top 8 variants by coverage in window 9:33027764-33027765
2012-10-07 16:50:20,416 - DEBUG - Taking top 8 variants by coverage in window 9:33034399-33034400
2012-10-07 16:50:21,118 - DEBUG - Taking top 8 variants by coverage in window 9:33040054-33040055
2012-10-07 16:50:21,140 - DEBUG - Taking top 8 variants by coverage in window 9:33040062-33040063
2012-10-07 16:50:21,246 - DEBUG - Taking top 8 variants by coverage in window 9:33040078-33040082
2012-10-07 16:50:21,406 - DEBUG - Taking top 8 variants by coverage in window 9:33040106-33040107
2012-10-07 16:50:22,428 - DEBUG - Taking top 8 variants by coverage in window 9:33053999-33054003
2012-10-07 16:50:22,440 - DEBUG - Taking top 8 variants by coverage in window 9:33054005-33054008
2012-10-07 16:50:22,712 - DEBUG - Taking top 8 variants by coverage in window 9:33055739-33055741
2012-10-07 16:50:22,760 - DEBUG - Taking top 8 variants by coverage in window 9:33055770-33055771
2012-10-07 16:50:23,181 - DEBUG - Taking top 8 variants by coverage in window 9:33062579-33062580
2012-10-07 16:50:23,190 - DEBUG - Taking top 8 variants by coverage in window 9:33062593-33062594
2012-10-07 16:50:23,332 - DEBUG - Taking top 8 variants by coverage in window 9:33064567-33064568
2012-10-07 16:50:24,282 - DEBUG - Taking top 8 variants by coverage in window 9:33088609-33088610
2012-10-07 16:50:24,831 - DEBUG - Taking top 8 variants by coverage in window 9:33096236-33096246
2012-10-07 16:50:25,513 - DEBUG - Taking top 8 variants by coverage in window 9:33104709-33104715
2012-10-07 16:50:26,311 - DEBUG - Taking top 8 variants by coverage in window 9:33119103-33119104
2012-10-07 16:50:26,881 - DEBUG - Taking top 8 variants by coverage in window 9:33131176-33131177
2012-10-07 16:50:27,158 - DEBUG - Taking top 8 variants by coverage in window 9:33139418-33139419
2012-10-07 16:50:27,364 - DEBUG - Taking top 8 variants by coverage in window 9:33143477-33143478
2012-10-07 16:50:29,076 - DEBUG - Taking top 8 variants by coverage in window 9:33178393-33178394
2012-10-07 16:50:29,623 - DEBUG - Taking top 8 variants by coverage in window 9:33197808-33197809
2012-10-07 16:50:30,087 - DEBUG - Taking top 8 variants by coverage in window 9:33222860-33222861
2012-10-07 16:50:30,300 - DEBUG - Taking top 8 variants by coverage in window 9:33230436-33230437
2012-10-07 16:50:31,097 - DEBUG - Taking top 8 variants by coverage in window 9:33250460-33250468
2012-10-07 16:50:31,338 - DEBUG - Taking top 8 variants by coverage in window 9:33255203-33255204
2012-10-07 16:50:31,498 - DEBUG - Taking top 8 variants by coverage in window 9:33257225-33257226
2012-10-07 16:50:31,614 - DEBUG - Taking top 8 variants by coverage in window 9:33259201-33259202
2012-10-07 16:50:32,164 - DEBUG - Taking top 8 variants by coverage in window 9:33267954-33267956
2012-10-07 16:50:32,629 - DEBUG - Taking top 8 variants by coverage in window 9:33274875-33274876
2012-10-07 16:50:32,650 - DEBUG - Taking top 8 variants by coverage in window 9:33274881-33274882
2012-10-07 16:50:33,000 - DEBUG - Taking top 8 variants by coverage in window 9:33284565-33284566
2012-10-07 16:50:33,192 - DEBUG - Taking top 8 variants by coverage in window 9:33289026-33289027
2012-10-07 16:50:33,498 - DEBUG - Taking top 8 variants by coverage in window 9:33292232-33292233
2012-10-07 16:50:33,706 - DEBUG - Taking top 8 variants by coverage in window 9:33295690-33295695
2012-10-07 16:50:33,736 - DEBUG - Taking top 8 variants by coverage in window 9:33295701-33295702
2012-10-07 16:50:34,043 - DEBUG - Taking top 8 variants by coverage in window 9:33297915-33297916
2012-10-07 16:50:34,195 - DEBUG - Taking top 8 variants by coverage in window 9:33302311-33302312
2012-10-07 16:50:35,288 - DEBUG - Taking top 8 variants by coverage in window 9:33322397-33322398
2012-10-07 16:50:35,987 - DEBUG - Taking top 8 variants by coverage in window 9:33332898-33332899
2012-10-07 16:50:36,178 - DEBUG - Taking top 8 variants by coverage in window 9:33336072-33336073
2012-10-07 16:50:36,188 - DEBUG - Taking top 8 variants by coverage in window 9:33336101-33336102
2012-10-07 16:50:36,908 - DEBUG - Taking top 8 variants by coverage in window 9:33352425-33352426
2012-10-07 16:50:37,009 - DEBUG - Taking top 8 variants by coverage in window 9:33353451-33353452
2012-10-07 16:50:38,947 - DEBUG - Taking top 8 variants by coverage in window 9:33388709-33388710
2012-10-07 16:50:38,990 - DEBUG - Taking top 8 variants by coverage in window 9:33388728-33388730
2012-10-07 16:50:39,093 - DEBUG - Taking top 8 variants by coverage in window 9:33389363-33389368
2012-10-07 16:50:39,424 - DEBUG - Taking top 8 variants by coverage in window 9:33395074-33395075
2012-10-07 16:50:40,801 - DEBUG - Taking top 8 variants by coverage in window 9:33424817-33424818
2012-10-07 16:50:40,843 - DEBUG - Taking top 8 variants by coverage in window 9:33425167-33425168
2012-10-07 16:50:42,902 - DEBUG - Taking top 8 variants by coverage in window 9:33456107-33456108
2012-10-07 16:50:43,023 - DEBUG - Taking top 8 variants by coverage in window 9:33457986-33457992
2012-10-07 16:50:43,083 - DEBUG - Taking top 8 variants by coverage in window 9:33458087-33458088
2012-10-07 16:50:43,232 - DEBUG - Taking top 8 variants by coverage in window 9:33458806-33458808
2012-10-07 16:50:43,518 - DEBUG - Taking top 8 variants by coverage in window 9:33462662-33462677
2012-10-07 16:50:43,922 - DEBUG - Taking top 8 variants by coverage in window 9:33467675-33467676
2012-10-07 16:50:44,609 - DEBUG - Taking top 8 variants by coverage in window 9:33481146-33481150
2012-10-07 16:50:44,675 - DEBUG - Taking top 8 variants by coverage in window 9:33481587-33481588
2012-10-07 16:50:46,351 - DEBUG - Taking top 8 variants by coverage in window 9:33508129-33508133
2012-10-07 16:50:46,446 - DEBUG - Taking top 8 variants by coverage in window 9:33508173-33508175
2012-10-07 16:50:46,679 - DEBUG - Taking top 8 variants by coverage in window 9:33513242-33513243
2012-10-07 16:50:47,430 - DEBUG - Taking top 8 variants by coverage in window 9:33521726-33521727
2012-10-07 16:50:47,498 - DEBUG - Taking top 8 variants by coverage in window 9:33522068-33522070
2012-10-07 16:50:48,148 - DEBUG - Taking top 8 variants by coverage in window 9:33533350-33533352
2012-10-07 16:50:48,405 - DEBUG - Taking top 8 variants by coverage in window 9:33539786-33539787
2012-10-07 16:50:48,445 - DEBUG - Taking top 8 variants by coverage in window 9:33539849-33539850
2012-10-07 16:50:49,092 - DEBUG - Taking top 8 variants by coverage in window 9:33547963-33547964
2012-10-07 16:50:49,189 - DEBUG - Taking top 8 variants by coverage in window 9:33548622-33548633
2012-10-07 16:50:49,244 - DEBUG - Taking top 8 variants by coverage in window 9:33548662-33548663
2012-10-07 16:50:50,104 - DEBUG - Taking top 8 variants by coverage in window 9:33558513-33558515
2012-10-07 16:50:50,704 - DEBUG - Taking top 8 variants by coverage in window 9:33563610-33563611
2012-10-07 16:50:51,694 - DEBUG - Taking top 8 variants by coverage in window 9:33577416-33577417
2012-10-07 16:50:51,764 - DEBUG - Taking top 8 variants by coverage in window 9:33577684-33577685
2012-10-07 16:50:52,103 - DEBUG - Taking top 8 variants by coverage in window 9:33582822-33582823
2012-10-07 16:50:52,998 - DEBUG - Taking top 8 variants by coverage in window 9:33594394-33594395
2012-10-07 16:50:53,640 - DEBUG - Taking top 8 variants by coverage in window 9:33607087-33607091
2012-10-07 16:50:54,134 - DEBUG - Taking top 8 variants by coverage in window 9:33611124-33611125
2012-10-07 16:50:54,253 - DEBUG - Taking top 8 variants by coverage in window 9:33611666-33611667
2012-10-07 16:50:54,331 - DEBUG - Taking top 8 variants by coverage in window 9:33611713-33611714
2012-10-07 16:50:54,352 - DEBUG - Taking top 8 variants by coverage in window 9:33611913-33611914
2012-10-07 16:50:54,647 - DEBUG - Taking top 8 variants by coverage in window 9:33618163-33618164
2012-10-07 16:50:55,812 - DEBUG - Taking top 8 variants by coverage in window 9:33624738-33624739
2012-10-07 16:50:55,842 - DEBUG - Taking top 8 variants by coverage in window 9:33624742-33624743
2012-10-07 16:50:56,272 - DEBUG - Taking top 8 variants by coverage in window 9:33630818-33630819
2012-10-07 16:50:56,608 - DEBUG - Taking top 8 variants by coverage in window 9:33635899-33635902
2012-10-07 16:50:56,646 - DEBUG - Taking top 8 variants by coverage in window 9:33636474-33636475
2012-10-07 16:50:56,896 - DEBUG - Taking top 8 variants by coverage in window 9:33639827-33639828
2012-10-07 16:50:58,156 - DEBUG - Taking top 8 variants by coverage in window 9:33659792-33659793
2012-10-07 16:50:58,174 - DEBUG - Taking top 8 variants by coverage in window 9:33659808-33659809
2012-10-07 16:50:58,192 - DEBUG - Taking top 8 variants by coverage in window 9:33659825-33659826
2012-10-07 16:50:59,960 - DEBUG - Taking top 8 variants by coverage in window 9:33687031-33687032
2012-10-07 16:51:00,067 - DEBUG - Taking top 8 variants by coverage in window 9:33687818-33687819
2012-10-07 16:51:01,150 - DEBUG - Taking top 8 variants by coverage in window 9:33704961-33704962
2012-10-07 16:51:01,570 - DEBUG - Taking top 8 variants by coverage in window 9:33721746-33721747
2012-10-07 16:51:01,594 - DEBUG - Taking top 8 variants by coverage in window 9:33722352-33722357
2012-10-07 16:51:02,525 - DEBUG - Taking top 8 variants by coverage in window 9:33740619-33740620
2012-10-07 16:51:02,654 - DEBUG - Taking top 8 variants by coverage in window 9:33742896-33742897
2012-10-07 16:51:02,911 - DEBUG - Taking top 8 variants by coverage in window 9:33746361-33746362
2012-10-07 16:51:02,928 - DEBUG - Taking top 8 variants by coverage in window 9:33746377-33746378
2012-10-07 16:51:03,698 - DEBUG - Taking top 8 variants by coverage in window 9:33759022-33759023
2012-10-07 16:51:03,960 - DEBUG - Taking top 8 variants by coverage in window 9:33763294-33763295
2012-10-07 16:51:04,752 - DEBUG - Taking top 8 variants by coverage in window 9:33789169-33789170
2012-10-07 16:51:05,579 - DEBUG - Taking top 8 variants by coverage in window 9:33804061-33804073
2012-10-07 16:51:06,133 - DEBUG - Taking top 8 variants by coverage in window 9:33812248-33812249
2012-10-07 16:51:06,304 - DEBUG - Taking top 8 variants by coverage in window 9:33815798-33815799
2012-10-07 16:51:06,392 - DEBUG - Taking top 8 variants by coverage in window 9:33817409-33817410
2012-10-07 16:51:07,805 - DEBUG - Taking top 8 variants by coverage in window 9:33839844-33839848
2012-10-07 16:51:07,913 - DEBUG - Taking top 8 variants by coverage in window 9:33839918-33839919
2012-10-07 16:51:08,584 - DEBUG - Taking top 8 variants by coverage in window 9:33849560-33849562
2012-10-07 16:51:09,178 - DEBUG - Taking top 8 variants by coverage in window 9:33861402-33861403
2012-10-07 16:51:09,906 - DEBUG - Taking top 8 variants by coverage in window 9:33872343-33872345
2012-10-07 16:51:10,073 - DEBUG - Taking top 8 variants by coverage in window 9:33873647-33873650
2012-10-07 16:51:10,228 - DEBUG - Taking top 8 variants by coverage in window 9:33874422-33874423
2012-10-07 16:51:10,267 - DEBUG - Taking top 8 variants by coverage in window 9:33874465-33874466
2012-10-07 16:51:11,725 - DEBUG - Taking top 8 variants by coverage in window 9:33893121-33893124
2012-10-07 16:51:12,473 - DEBUG - Taking top 8 variants by coverage in window 9:33904532-33904533
2012-10-07 16:51:12,592 - DEBUG - Taking top 8 variants by coverage in window 9:33906850-33906852
2012-10-07 16:51:12,648 - DEBUG - Taking top 8 variants by coverage in window 9:33906885-33906886
2012-10-07 16:51:13,169 - DEBUG - Taking top 8 variants by coverage in window 9:33916139-33916141
2012-10-07 16:51:13,228 - DEBUG - Taking top 8 variants by coverage in window 9:33916219-33916220
2012-10-07 16:51:13,446 - DEBUG - Taking top 8 variants by coverage in window 9:33919288-33919291
2012-10-07 16:51:13,585 - DEBUG - Taking top 8 variants by coverage in window 9:33921497-33921498
2012-10-07 16:51:13,647 - DEBUG - Taking top 8 variants by coverage in window 9:33921543-33921544
2012-10-07 16:51:14,204 - DEBUG - Taking top 8 variants by coverage in window 9:33927203-33927210
2012-10-07 16:51:14,646 - DEBUG - Taking top 8 variants by coverage in window 9:33935247-33935248
2012-10-07 16:51:15,057 - DEBUG - Taking top 8 variants by coverage in window 9:33938689-33938691
2012-10-07 16:51:15,073 - DEBUG - Taking top 8 variants by coverage in window 9:33938694-33938695
2012-10-07 16:51:15,541 - DEBUG - Taking top 8 variants by coverage in window 9:33946546-33946552
2012-10-07 16:51:16,532 - DEBUG - Taking top 8 variants by coverage in window 9:33959866-33959867
2012-10-07 16:51:16,553 - DEBUG - Taking top 8 variants by coverage in window 9:33959874-33959875
2012-10-07 16:51:16,688 - DEBUG - Taking top 8 variants by coverage in window 9:33960877-33960878
2012-10-07 16:51:17,068 - DEBUG - Taking top 8 variants by coverage in window 9:33966805-33966806
2012-10-07 16:51:17,436 - DEBUG - Taking top 8 variants by coverage in window 9:33974705-33974709
2012-10-07 16:51:17,954 - DEBUG - Taking top 8 variants by coverage in window 9:33979718-33979719
2012-10-07 16:51:17,974 - DEBUG - Taking top 8 variants by coverage in window 9:33979807-33979808
2012-10-07 16:51:18,125 - DEBUG - Taking top 8 variants by coverage in window 9:33981013-33981014
2012-10-07 16:51:18,646 - DEBUG - Taking top 8 variants by coverage in window 9:33992205-33992206
2012-10-07 16:51:19,869 - DEBUG - Read 103579 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 16:51:20,186 - DEBUG - Read 112404 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 16:51:20,455 - DEBUG - Read 129394 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 16:51:20,761 - DEBUG - Read 131897 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 16:51:21,053 - DEBUG - Read 124651 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 16:51:21,310 - DEBUG - Read 117163 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 16:51:21,576 - DEBUG - Read 124185 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 16:51:21,841 - DEBUG - Read 113326 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 16:51:22,088 - DEBUG - Read 108428 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 16:51:22,338 - DEBUG - Read 107032 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 16:51:22,606 - DEBUG - Read 119365 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 16:51:22,844 - DEBUG - Read 109240 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 16:51:23,095 - DEBUG - Read 111664 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 16:51:23,348 - DEBUG - Read 121498 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 16:51:23,633 - DEBUG - Read 130654 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 16:51:23,869 - DEBUG - Read 101606 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 16:51:24,127 - DEBUG - Read 124623 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 16:51:24,394 - DEBUG - Read 118947 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 16:51:24,626 - DEBUG - Read 105449 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 16:51:24,871 - DEBUG - Read 103785 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 16:51:24,973 - DEBUG - Detected 19668 variants in 103579 reads
2012-10-07 16:51:25,129 - DEBUG - Detected 29224 variants in 112404 reads
2012-10-07 16:51:25,350 - DEBUG - Detected 37625 variants in 129394 reads
2012-10-07 16:51:25,592 - DEBUG - Detected 44172 variants in 131897 reads
2012-10-07 16:51:25,851 - DEBUG - Detected 51331 variants in 124651 reads
2012-10-07 16:51:26,137 - DEBUG - Detected 57335 variants in 117163 reads
2012-10-07 16:51:26,466 - DEBUG - Detected 71431 variants in 124185 reads
2012-10-07 16:51:26,852 - DEBUG - Detected 77994 variants in 113326 reads
2012-10-07 16:51:27,259 - DEBUG - Detected 83372 variants in 108428 reads
2012-10-07 16:51:27,723 - DEBUG - Detected 88171 variants in 107032 reads
2012-10-07 16:51:28,185 - DEBUG - Detected 93684 variants in 119365 reads
2012-10-07 16:51:28,659 - DEBUG - Detected 97273 variants in 109240 reads
2012-10-07 16:51:29,154 - DEBUG - Detected 101081 variants in 111664 reads
2012-10-07 16:51:29,673 - DEBUG - Detected 105586 variants in 121498 reads
2012-10-07 16:51:30,222 - DEBUG - Detected 112857 variants in 130654 reads
2012-10-07 16:51:30,781 - DEBUG - Detected 116339 variants in 101606 reads
2012-10-07 16:51:31,423 - DEBUG - Detected 119815 variants in 124623 reads
2012-10-07 16:51:32,028 - DEBUG - Detected 123615 variants in 118947 reads
2012-10-07 16:51:32,644 - DEBUG - Detected 127429 variants in 105449 reads
2012-10-07 16:51:33,270 - DEBUG - Detected 131835 variants in 103785 reads
2012-10-07 16:51:34,824 - DEBUG - Taking top 8 variants by coverage in window 9:34014584-34014585
2012-10-07 16:51:34,870 - DEBUG - Taking top 8 variants by coverage in window 9:34015250-34015251
2012-10-07 16:51:35,357 - DEBUG - Taking top 8 variants by coverage in window 9:34023954-34023966
2012-10-07 16:51:35,410 - DEBUG - Taking top 8 variants by coverage in window 9:34024963-34024966
2012-10-07 16:51:35,898 - DEBUG - Taking top 8 variants by coverage in window 9:34033277-34033278
2012-10-07 16:51:36,605 - DEBUG - Taking top 8 variants by coverage in window 9:34043052-34043053
2012-10-07 16:51:36,627 - DEBUG - Taking top 8 variants by coverage in window 9:34043085-34043086
2012-10-07 16:51:36,763 - DEBUG - Taking top 8 variants by coverage in window 9:34045457-34045461
2012-10-07 16:51:38,671 - DEBUG - Taking top 8 variants by coverage in window 9:34045691-34045692
2012-10-07 16:51:38,994 - DEBUG - Taking top 8 variants by coverage in window 9:34050348-34050350
2012-10-07 16:51:40,354 - DEBUG - Taking top 8 variants by coverage in window 9:34079661-34079666
2012-10-07 16:51:40,401 - DEBUG - Taking top 8 variants by coverage in window 9:34079692-34079693
2012-10-07 16:51:40,420 - DEBUG - Taking top 8 variants by coverage in window 9:34079695-34079696
2012-10-07 16:51:40,544 - DEBUG - Taking top 8 variants by coverage in window 9:34080085-34080105
2012-10-07 16:51:40,893 - DEBUG - Taking top 8 variants by coverage in window 9:34084212-34084213
2012-10-07 16:51:40,909 - DEBUG - Taking top 8 variants by coverage in window 9:34084218-34084219
2012-10-07 16:51:41,184 - DEBUG - Taking top 8 variants by coverage in window 9:34088700-34088701
2012-10-07 16:51:41,628 - DEBUG - Taking top 8 variants by coverage in window 9:34095450-34095451
2012-10-07 16:51:42,286 - DEBUG - Taking top 8 variants by coverage in window 9:34103864-34103865
2012-10-07 16:51:44,430 - DEBUG - Taking top 8 variants by coverage in window 9:34135293-34135294
2012-10-07 16:51:44,444 - DEBUG - Taking top 8 variants by coverage in window 9:34135299-34135304
2012-10-07 16:51:45,765 - DEBUG - Taking top 8 variants by coverage in window 9:34157261-34157273
2012-10-07 16:51:45,936 - DEBUG - Taking top 8 variants by coverage in window 9:34160789-34160790
2012-10-07 16:51:46,346 - DEBUG - Taking top 8 variants by coverage in window 9:34169148-34169149
2012-10-07 16:51:46,504 - DEBUG - Taking top 8 variants by coverage in window 9:34171621-34171639
2012-10-07 16:51:46,745 - DEBUG - Taking top 8 variants by coverage in window 9:34178122-34178133
2012-10-07 16:51:47,466 - DEBUG - Taking top 8 variants by coverage in window 9:34193494-34193495
2012-10-07 16:51:47,579 - DEBUG - Taking top 8 variants by coverage in window 9:34195786-34195787
2012-10-07 16:51:47,595 - DEBUG - Taking top 8 variants by coverage in window 9:34195812-34195813
2012-10-07 16:51:47,644 - DEBUG - Taking top 8 variants by coverage in window 9:34196355-34196356
2012-10-07 16:51:48,607 - DEBUG - Taking top 8 variants by coverage in window 9:34212374-34212377
2012-10-07 16:51:49,519 - DEBUG - Taking top 8 variants by coverage in window 9:34219818-34219819
2012-10-07 16:51:49,981 - DEBUG - Taking top 8 variants by coverage in window 9:34225507-34225508
2012-10-07 16:51:50,128 - DEBUG - Taking top 8 variants by coverage in window 9:34226975-34226976
2012-10-07 16:51:50,180 - DEBUG - Taking top 8 variants by coverage in window 9:34226991-34226992
2012-10-07 16:51:50,376 - DEBUG - Taking top 8 variants by coverage in window 9:34228493-34228494
2012-10-07 16:51:50,491 - DEBUG - Taking top 8 variants by coverage in window 9:34229014-34229018
2012-10-07 16:51:50,601 - DEBUG - Taking top 8 variants by coverage in window 9:34229641-34229652
2012-10-07 16:51:50,687 - DEBUG - Taking top 8 variants by coverage in window 9:34229656-34229657
2012-10-07 16:51:50,964 - DEBUG - Taking top 8 variants by coverage in window 9:34232948-34232949
2012-10-07 16:51:50,979 - DEBUG - Taking top 8 variants by coverage in window 9:34232990-34232991
2012-10-07 16:51:51,923 - DEBUG - Taking top 8 variants by coverage in window 9:34247848-34247852
2012-10-07 16:51:53,070 - DEBUG - Taking top 8 variants by coverage in window 9:34271211-34271212
2012-10-07 16:51:54,988 - DEBUG - Taking top 8 variants by coverage in window 9:34295817-34295818
2012-10-07 16:51:55,144 - DEBUG - Taking top 8 variants by coverage in window 9:34298195-34298196
2012-10-07 16:51:55,462 - DEBUG - Taking top 8 variants by coverage in window 9:34300362-34300363
2012-10-07 16:51:56,352 - DEBUG - Taking top 8 variants by coverage in window 9:34309833-34309834
2012-10-07 16:51:57,045 - DEBUG - Taking top 8 variants by coverage in window 9:34318986-34318987
2012-10-07 16:51:57,068 - DEBUG - Taking top 8 variants by coverage in window 9:34318987-34318989
2012-10-07 16:51:57,203 - DEBUG - Taking top 8 variants by coverage in window 9:34319419-34319420
2012-10-07 16:51:57,279 - DEBUG - Taking top 8 variants by coverage in window 9:34320448-34320466
2012-10-07 16:51:57,698 - DEBUG - Taking top 8 variants by coverage in window 9:34327487-34327488
2012-10-07 16:51:57,737 - DEBUG - Taking top 8 variants by coverage in window 9:34327761-34327772
2012-10-07 16:51:58,150 - DEBUG - Taking top 8 variants by coverage in window 9:34334336-34334337
2012-10-07 16:51:58,263 - DEBUG - Taking top 8 variants by coverage in window 9:34335341-34335342
2012-10-07 16:51:58,322 - DEBUG - Taking top 8 variants by coverage in window 9:34337229-34337230
2012-10-07 16:51:58,451 - DEBUG - Taking top 8 variants by coverage in window 9:34338053-34338054
2012-10-07 16:51:58,601 - DEBUG - Taking top 8 variants by coverage in window 9:34338956-34338960
2012-10-07 16:51:58,956 - DEBUG - Taking top 8 variants by coverage in window 9:34343646-34343658
2012-10-07 16:51:59,020 - DEBUG - Taking top 8 variants by coverage in window 9:34343834-34343835
2012-10-07 16:51:59,579 - DEBUG - Taking top 8 variants by coverage in window 9:34350911-34350912
2012-10-07 16:52:00,569 - DEBUG - Taking top 8 variants by coverage in window 9:34364469-34364477
2012-10-07 16:52:00,659 - DEBUG - Taking top 8 variants by coverage in window 9:34364628-34364629
2012-10-07 16:52:00,708 - DEBUG - Taking top 8 variants by coverage in window 9:34364768-34364769
2012-10-07 16:52:01,005 - DEBUG - Taking top 8 variants by coverage in window 9:34367611-34367612
2012-10-07 16:52:01,335 - DEBUG - Taking top 8 variants by coverage in window 9:34370639-34370642
2012-10-07 16:52:03,389 - DEBUG - Taking top 8 variants by coverage in window 9:34400003-34400004
2012-10-07 16:52:04,054 - DEBUG - Taking top 8 variants by coverage in window 9:34409100-34409104
2012-10-07 16:52:04,935 - DEBUG - Taking top 8 variants by coverage in window 9:34425001-34425002
2012-10-07 16:52:05,036 - DEBUG - Taking top 8 variants by coverage in window 9:34426656-34426657
2012-10-07 16:52:05,047 - DEBUG - Taking top 8 variants by coverage in window 9:34426658-34426662
2012-10-07 16:52:05,210 - DEBUG - Taking top 8 variants by coverage in window 9:34428538-34428539
2012-10-07 16:52:05,807 - DEBUG - Taking top 8 variants by coverage in window 9:34435430-34435431
2012-10-07 16:52:07,365 - DEBUG - Taking top 8 variants by coverage in window 9:34461442-34461443
2012-10-07 16:52:07,388 - DEBUG - Taking top 8 variants by coverage in window 9:34461471-34461472
2012-10-07 16:52:07,605 - DEBUG - Taking top 8 variants by coverage in window 9:34464417-34464421
2012-10-07 16:52:07,623 - DEBUG - Taking top 8 variants by coverage in window 9:34464430-34464431
2012-10-07 16:52:07,888 - DEBUG - Taking top 8 variants by coverage in window 9:34467310-34467311
2012-10-07 16:52:07,910 - DEBUG - Taking top 8 variants by coverage in window 9:34467313-34467323
2012-10-07 16:52:08,271 - DEBUG - Taking top 8 variants by coverage in window 9:34469813-34469814
2012-10-07 16:52:08,430 - DEBUG - Taking top 8 variants by coverage in window 9:34470152-34470156
2012-10-07 16:52:08,447 - DEBUG - Taking top 8 variants by coverage in window 9:34470158-34470161
2012-10-07 16:52:08,526 - DEBUG - Taking top 8 variants by coverage in window 9:34470168-34470176
2012-10-07 16:52:09,287 - DEBUG - Taking top 8 variants by coverage in window 9:34470218-34470228
2012-10-07 16:52:09,826 - DEBUG - Taking top 8 variants by coverage in window 9:34477726-34477727
2012-10-07 16:52:09,844 - DEBUG - Taking top 8 variants by coverage in window 9:34477729-34477730
2012-10-07 16:52:10,030 - DEBUG - Taking top 8 variants by coverage in window 9:34478960-34478961
2012-10-07 16:52:11,508 - DEBUG - Taking top 8 variants by coverage in window 9:34495549-34495550
2012-10-07 16:52:11,561 - DEBUG - Taking top 8 variants by coverage in window 9:34495896-34495897
2012-10-07 16:52:11,635 - DEBUG - Taking top 8 variants by coverage in window 9:34496072-34496073
2012-10-07 16:52:11,737 - DEBUG - Taking top 8 variants by coverage in window 9:34496341-34496342
2012-10-07 16:52:11,978 - DEBUG - Taking top 8 variants by coverage in window 9:34498370-34498371
2012-10-07 16:52:12,993 - DEBUG - Taking top 8 variants by coverage in window 9:34513383-34513384
2012-10-07 16:52:13,022 - DEBUG - Taking top 8 variants by coverage in window 9:34513406-34513407
2012-10-07 16:52:14,263 - DEBUG - Taking top 8 variants by coverage in window 9:34528450-34528453
2012-10-07 16:52:14,305 - DEBUG - Taking top 8 variants by coverage in window 9:34528472-34528473
2012-10-07 16:52:14,734 - DEBUG - Taking top 8 variants by coverage in window 9:34530330-34530331
2012-10-07 16:52:16,869 - DEBUG - Taking top 8 variants by coverage in window 9:34561165-34561166
2012-10-07 16:52:16,889 - DEBUG - Taking top 8 variants by coverage in window 9:34561185-34561186
2012-10-07 16:52:17,028 - DEBUG - Taking top 8 variants by coverage in window 9:34561314-34561315
2012-10-07 16:52:17,527 - DEBUG - Taking top 8 variants by coverage in window 9:34565809-34565810
2012-10-07 16:52:17,831 - DEBUG - Taking top 8 variants by coverage in window 9:34570199-34570200
2012-10-07 16:52:18,191 - DEBUG - Taking top 8 variants by coverage in window 9:34572103-34572104
2012-10-07 16:52:19,703 - DEBUG - Taking top 8 variants by coverage in window 9:34589380-34589381
2012-10-07 16:52:20,199 - DEBUG - Taking top 8 variants by coverage in window 9:34595630-34595631
2012-10-07 16:52:20,383 - DEBUG - Taking top 8 variants by coverage in window 9:34597208-34597209
2012-10-07 16:52:20,616 - DEBUG - Taking top 8 variants by coverage in window 9:34600567-34600568
2012-10-07 16:52:21,078 - DEBUG - Taking top 8 variants by coverage in window 9:34606650-34606651
2012-10-07 16:52:22,033 - DEBUG - Taking top 8 variants by coverage in window 9:34615176-34615178
2012-10-07 16:52:22,070 - DEBUG - Taking top 8 variants by coverage in window 9:34615968-34615983
2012-10-07 16:52:22,082 - DEBUG - Taking top 8 variants by coverage in window 9:34615985-34615989
2012-10-07 16:52:23,039 - DEBUG - Taking top 8 variants by coverage in window 9:34638582-34638584
2012-10-07 16:52:23,173 - DEBUG - Taking top 8 variants by coverage in window 9:34638596-34638601
2012-10-07 16:52:23,243 - DEBUG - Taking top 8 variants by coverage in window 9:34638701-34638707
2012-10-07 16:52:23,728 - DEBUG - Taking top 8 variants by coverage in window 9:34646585-34646586
2012-10-07 16:52:23,789 - DEBUG - Taking top 8 variants by coverage in window 9:34646721-34646722
2012-10-07 16:52:23,903 - DEBUG - Taking top 8 variants by coverage in window 9:34648513-34648516
2012-10-07 16:52:23,917 - DEBUG - Taking top 8 variants by coverage in window 9:34648522-34648523
2012-10-07 16:52:24,373 - DEBUG - Taking top 8 variants by coverage in window 9:34654933-34654934
2012-10-07 16:52:25,080 - DEBUG - Taking top 8 variants by coverage in window 9:34663761-34663762
2012-10-07 16:52:25,250 - DEBUG - Taking top 8 variants by coverage in window 9:34666015-34666020
2012-10-07 16:52:25,564 - DEBUG - Taking top 8 variants by coverage in window 9:34668801-34668802
2012-10-07 16:52:25,814 - DEBUG - Taking top 8 variants by coverage in window 9:34671518-34671522
2012-10-07 16:52:27,066 - DEBUG - Taking top 8 variants by coverage in window 9:34686082-34686083
2012-10-07 16:52:27,155 - DEBUG - Taking top 8 variants by coverage in window 9:34686368-34686373
2012-10-07 16:52:27,916 - DEBUG - Taking top 8 variants by coverage in window 9:34688123-34688124
2012-10-07 16:52:28,394 - DEBUG - Taking top 8 variants by coverage in window 9:34691618-34691619
2012-10-07 16:52:29,391 - DEBUG - Taking top 8 variants by coverage in window 9:34691923-34691931
2012-10-07 16:52:29,553 - DEBUG - Taking top 8 variants by coverage in window 9:34692978-34692980
2012-10-07 16:52:29,766 - DEBUG - Taking top 8 variants by coverage in window 9:34693685-34693686
2012-10-07 16:52:29,787 - DEBUG - Taking top 8 variants by coverage in window 9:34693702-34693703
2012-10-07 16:52:29,807 - DEBUG - Taking top 8 variants by coverage in window 9:34693706-34693707
2012-10-07 16:52:30,423 - DEBUG - Taking top 8 variants by coverage in window 9:34700657-34700658
2012-10-07 16:52:30,511 - DEBUG - Taking top 8 variants by coverage in window 9:34701292-34701294
2012-10-07 16:52:30,528 - DEBUG - Taking top 8 variants by coverage in window 9:34701304-34701305
2012-10-07 16:52:30,680 - DEBUG - Taking top 8 variants by coverage in window 9:34702886-34702887
2012-10-07 16:52:31,090 - DEBUG - Taking top 8 variants by coverage in window 9:34707243-34707244
2012-10-07 16:52:31,545 - DEBUG - Taking top 8 variants by coverage in window 9:34712426-34712427
2012-10-07 16:52:32,483 - DEBUG - Taking top 8 variants by coverage in window 9:34725258-34725259
2012-10-07 16:52:32,634 - DEBUG - Taking top 8 variants by coverage in window 9:34727106-34727107
2012-10-07 16:52:33,362 - DEBUG - Taking top 8 variants by coverage in window 9:34737406-34737407
2012-10-07 16:52:33,380 - DEBUG - Taking top 8 variants by coverage in window 9:34737443-34737444
2012-10-07 16:52:34,253 - DEBUG - Taking top 8 variants by coverage in window 9:34748933-34748939
2012-10-07 16:52:34,662 - DEBUG - Taking top 8 variants by coverage in window 9:34749442-34749443
2012-10-07 16:52:34,685 - DEBUG - Taking top 8 variants by coverage in window 9:34749484-34749485
2012-10-07 16:52:35,023 - DEBUG - Taking top 8 variants by coverage in window 9:34755676-34755677
2012-10-07 16:52:35,045 - DEBUG - Taking top 8 variants by coverage in window 9:34755713-34755714
2012-10-07 16:52:35,864 - DEBUG - Taking top 8 variants by coverage in window 9:34766986-34766987
2012-10-07 16:52:36,298 - DEBUG - Taking top 8 variants by coverage in window 9:34773082-34773083
2012-10-07 16:52:36,483 - DEBUG - Taking top 8 variants by coverage in window 9:34774417-34774418
2012-10-07 16:52:36,739 - DEBUG - Taking top 8 variants by coverage in window 9:34776674-34776678
2012-10-07 16:52:38,123 - DEBUG - Taking top 8 variants by coverage in window 9:34788019-34788021
2012-10-07 16:52:39,340 - DEBUG - Taking top 8 variants by coverage in window 9:34802952-34802953
2012-10-07 16:52:39,358 - DEBUG - Taking top 8 variants by coverage in window 9:34802958-34802959
2012-10-07 16:52:39,390 - DEBUG - Taking top 8 variants by coverage in window 9:34802981-34802982
2012-10-07 16:52:39,501 - DEBUG - Taking top 8 variants by coverage in window 9:34804353-34804354
2012-10-07 16:52:40,193 - DEBUG - Taking top 8 variants by coverage in window 9:34812075-34812076
2012-10-07 16:52:40,483 - DEBUG - Taking top 8 variants by coverage in window 9:34814328-34814330
2012-10-07 16:52:40,978 - DEBUG - Taking top 8 variants by coverage in window 9:34821588-34821593
2012-10-07 16:52:41,700 - DEBUG - Taking top 8 variants by coverage in window 9:34830030-34830031
2012-10-07 16:52:41,981 - DEBUG - Taking top 8 variants by coverage in window 9:34835484-34835485
2012-10-07 16:52:42,083 - DEBUG - Taking top 8 variants by coverage in window 9:34837862-34837863
2012-10-07 16:52:42,881 - DEBUG - Taking top 8 variants by coverage in window 9:34849567-34849568
2012-10-07 16:52:42,950 - DEBUG - Taking top 8 variants by coverage in window 9:34850349-34850350
2012-10-07 16:52:43,521 - DEBUG - Taking top 8 variants by coverage in window 9:34857574-34857575
2012-10-07 16:52:45,217 - DEBUG - Taking top 8 variants by coverage in window 9:34876838-34876839
2012-10-07 16:52:46,418 - DEBUG - Taking top 8 variants by coverage in window 9:34910286-34910288
2012-10-07 16:52:46,734 - DEBUG - Taking top 8 variants by coverage in window 9:34915073-34915074
2012-10-07 16:52:47,500 - DEBUG - Taking top 8 variants by coverage in window 9:34930667-34930668
2012-10-07 16:52:48,261 - DEBUG - Taking top 8 variants by coverage in window 9:34941322-34941327
2012-10-07 16:52:48,278 - DEBUG - Taking top 8 variants by coverage in window 9:34941345-34941346
2012-10-07 16:52:48,677 - DEBUG - Taking top 8 variants by coverage in window 9:34948429-34948432
2012-10-07 16:52:49,943 - DEBUG - Taking top 8 variants by coverage in window 9:34969886-34969887
2012-10-07 16:52:50,693 - DEBUG - Taking top 8 variants by coverage in window 9:34976764-34976765
2012-10-07 16:52:52,156 - DEBUG - Taking top 8 variants by coverage in window 9:34999813-34999816
2012-10-07 16:52:52,892 - INFO - Processing region 9:35000000-36000000
2012-10-07 16:52:54,605 - DEBUG - Read 207570 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 16:52:57,211 - DEBUG - Read 264679 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 16:52:59,447 - DEBUG - Read 258132 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 16:53:02,579 - DEBUG - Read 298978 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 16:53:05,135 - DEBUG - Read 252067 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 16:53:08,286 - DEBUG - Read 304307 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 16:53:10,972 - DEBUG - Read 281464 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 16:53:13,389 - DEBUG - Read 245001 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 16:53:15,743 - DEBUG - Read 239533 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 16:53:19,104 - DEBUG - Read 289506 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 16:53:22,180 - DEBUG - Read 302046 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 16:53:25,499 - DEBUG - Read 308471 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 16:53:28,444 - DEBUG - Read 289328 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 16:53:31,249 - DEBUG - Read 292410 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 16:53:34,041 - DEBUG - Read 287230 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 16:53:37,107 - DEBUG - Read 294901 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 16:53:40,087 - DEBUG - Read 299871 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 16:53:42,246 - DEBUG - Read 223352 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 16:53:44,842 - DEBUG - Read 269704 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 16:53:44,848 - WARNING - Too many reads (>5000000) in region 9:35000000-36000000. Skipping this region.
2012-10-07 16:53:56,672 - INFO - Skipping region 9:35000000-36000000 as there are too many reads here
2012-10-07 16:53:56,899 - DEBUG - Read 88028 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 16:53:57,132 - DEBUG - Read 94691 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 16:53:57,385 - DEBUG - Read 110638 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 16:53:57,660 - DEBUG - Read 108744 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 16:53:57,928 - DEBUG - Read 106030 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 16:53:58,169 - DEBUG - Read 100905 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 16:53:58,422 - DEBUG - Read 106301 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 16:53:58,666 - DEBUG - Read 95006 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 16:53:58,894 - DEBUG - Read 91474 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 16:53:59,133 - DEBUG - Read 93952 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 16:53:59,385 - DEBUG - Read 103586 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 16:53:59,606 - DEBUG - Read 90884 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 16:53:59,837 - DEBUG - Read 91764 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 16:54:00,074 - DEBUG - Read 101870 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 16:54:00,342 - DEBUG - Read 110444 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 16:54:00,569 - DEBUG - Read 85790 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 16:54:00,817 - DEBUG - Read 105962 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 16:54:01,073 - DEBUG - Read 104093 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 16:54:01,283 - DEBUG - Read 86914 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 16:54:01,598 - DEBUG - Read 88556 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 16:54:01,680 - DEBUG - Detected 17853 variants in 88028 reads
2012-10-07 16:54:01,821 - DEBUG - Detected 25484 variants in 94691 reads
2012-10-07 16:54:01,992 - DEBUG - Detected 32560 variants in 110638 reads
2012-10-07 16:54:02,195 - DEBUG - Detected 41418 variants in 108744 reads
2012-10-07 16:54:02,425 - DEBUG - Detected 47269 variants in 106030 reads
2012-10-07 16:54:02,676 - DEBUG - Detected 52408 variants in 100905 reads
2012-10-07 16:54:02,969 - DEBUG - Detected 66672 variants in 106301 reads
2012-10-07 16:54:03,309 - DEBUG - Detected 71010 variants in 95006 reads
2012-10-07 16:54:03,665 - DEBUG - Detected 76913 variants in 91474 reads
2012-10-07 16:54:04,079 - DEBUG - Detected 81047 variants in 93952 reads
2012-10-07 16:54:04,486 - DEBUG - Detected 85118 variants in 103586 reads
2012-10-07 16:54:04,909 - DEBUG - Detected 89032 variants in 90884 reads
2012-10-07 16:54:05,350 - DEBUG - Detected 92952 variants in 91764 reads
2012-10-07 16:54:05,813 - DEBUG - Detected 96961 variants in 101870 reads
2012-10-07 16:54:06,306 - DEBUG - Detected 103223 variants in 110444 reads
2012-10-07 16:54:06,808 - DEBUG - Detected 106669 variants in 85790 reads
2012-10-07 16:54:07,392 - DEBUG - Detected 110075 variants in 105962 reads
2012-10-07 16:54:07,944 - DEBUG - Detected 114143 variants in 104093 reads
2012-10-07 16:54:08,501 - DEBUG - Detected 117677 variants in 86914 reads
2012-10-07 16:54:09,074 - DEBUG - Detected 121560 variants in 88556 reads
2012-10-07 16:54:11,000 - DEBUG - Taking top 8 variants by coverage in window 9:36022531-36022535
2012-10-07 16:54:12,277 - DEBUG - Taking top 8 variants by coverage in window 9:36039648-36039652
2012-10-07 16:54:12,454 - DEBUG - Taking top 8 variants by coverage in window 9:36042841-36042842
2012-10-07 16:54:12,763 - DEBUG - Taking top 8 variants by coverage in window 9:36053877-36053891
2012-10-07 16:54:12,834 - DEBUG - Taking top 8 variants by coverage in window 9:36056112-36056113
2012-10-07 16:54:14,173 - DEBUG - Taking top 8 variants by coverage in window 9:36073848-36073849
2012-10-07 16:54:14,722 - DEBUG - Taking top 8 variants by coverage in window 9:36082687-36082688
2012-10-07 16:54:15,418 - DEBUG - Taking top 8 variants by coverage in window 9:36098001-36098005
2012-10-07 16:54:16,132 - DEBUG - Taking top 8 variants by coverage in window 9:36113607-36113616
2012-10-07 16:54:17,290 - DEBUG - Taking top 8 variants by coverage in window 9:36133373-36133374
2012-10-07 16:54:19,934 - DEBUG - Taking top 8 variants by coverage in window 9:36181904-36181909
2012-10-07 16:54:20,869 - DEBUG - Taking top 8 variants by coverage in window 9:36201654-36201655
2012-10-07 16:54:21,039 - DEBUG - Taking top 8 variants by coverage in window 9:36212901-36212902
2012-10-07 16:54:21,654 - DEBUG - Taking top 8 variants by coverage in window 9:36227154-36227155
2012-10-07 16:54:21,678 - DEBUG - Taking top 8 variants by coverage in window 9:36227405-36227407
2012-10-07 16:54:22,136 - DEBUG - Taking top 8 variants by coverage in window 9:36238394-36238397
2012-10-07 16:54:24,450 - DEBUG - Taking top 8 variants by coverage in window 9:36300901-36300902
2012-10-07 16:54:26,469 - DEBUG - Taking top 8 variants by coverage in window 9:36334910-36334912
2012-10-07 16:54:28,973 - DEBUG - Taking top 8 variants by coverage in window 9:36391472-36391473
2012-10-07 16:54:29,267 - DEBUG - Taking top 8 variants by coverage in window 9:36394899-36394900
2012-10-07 16:54:30,541 - DEBUG - Taking top 8 variants by coverage in window 9:36422746-36422747
2012-10-07 16:54:31,456 - DEBUG - Taking top 8 variants by coverage in window 9:36444945-36444946
2012-10-07 16:54:32,031 - DEBUG - Taking top 8 variants by coverage in window 9:36456622-36456623
2012-10-07 16:54:32,449 - DEBUG - Taking top 8 variants by coverage in window 9:36460164-36460175
2012-10-07 16:54:32,706 - DEBUG - Taking top 8 variants by coverage in window 9:36474651-36474652
2012-10-07 16:54:33,618 - DEBUG - Taking top 8 variants by coverage in window 9:36503531-36503532
2012-10-07 16:54:33,775 - DEBUG - Taking top 8 variants by coverage in window 9:36505647-36505648
2012-10-07 16:54:34,659 - DEBUG - Taking top 8 variants by coverage in window 9:36523340-36523341
2012-10-07 16:54:35,474 - DEBUG - Taking top 8 variants by coverage in window 9:36535813-36535817
2012-10-07 16:54:35,485 - DEBUG - Taking top 8 variants by coverage in window 9:36535826-36535827
2012-10-07 16:54:36,047 - DEBUG - Taking top 8 variants by coverage in window 9:36547784-36547792
2012-10-07 16:54:36,365 - DEBUG - Taking top 8 variants by coverage in window 9:36549734-36549736
2012-10-07 16:54:36,622 - DEBUG - Taking top 8 variants by coverage in window 9:36553235-36553251
2012-10-07 16:54:36,781 - DEBUG - Taking top 8 variants by coverage in window 9:36556069-36556074
2012-10-07 16:54:38,083 - DEBUG - Taking top 8 variants by coverage in window 9:36572019-36572020
2012-10-07 16:54:38,936 - DEBUG - Taking top 8 variants by coverage in window 9:36584049-36584051
2012-10-07 16:54:39,126 - DEBUG - Taking top 8 variants by coverage in window 9:36584991-36584999
2012-10-07 16:54:40,667 - DEBUG - Taking top 8 variants by coverage in window 9:36609940-36609941
2012-10-07 16:54:40,739 - DEBUG - Taking top 8 variants by coverage in window 9:36610869-36610870
2012-10-07 16:54:41,469 - DEBUG - Taking top 8 variants by coverage in window 9:36618600-36618601
2012-10-07 16:54:41,503 - DEBUG - Taking top 8 variants by coverage in window 9:36618639-36618640
2012-10-07 16:54:41,808 - DEBUG - Taking top 8 variants by coverage in window 9:36621704-36621705
2012-10-07 16:54:43,205 - DEBUG - Taking top 8 variants by coverage in window 9:36642056-36642057
2012-10-07 16:54:43,683 - DEBUG - Taking top 8 variants by coverage in window 9:36646955-36646956
2012-10-07 16:54:44,120 - DEBUG - Taking top 8 variants by coverage in window 9:36649879-36649880
2012-10-07 16:54:44,503 - DEBUG - Taking top 8 variants by coverage in window 9:36654920-36654921
2012-10-07 16:54:44,533 - DEBUG - Taking top 8 variants by coverage in window 9:36654965-36654966
2012-10-07 16:54:44,634 - DEBUG - Taking top 8 variants by coverage in window 9:36655772-36655773
2012-10-07 16:54:44,955 - DEBUG - Taking top 8 variants by coverage in window 9:36660399-36660401
2012-10-07 16:54:45,749 - DEBUG - Taking top 8 variants by coverage in window 9:36671310-36671311
2012-10-07 16:54:46,798 - DEBUG - Taking top 8 variants by coverage in window 9:36680479-36680480
2012-10-07 16:54:46,983 - DEBUG - Taking top 8 variants by coverage in window 9:36681277-36681278
2012-10-07 16:54:47,725 - DEBUG - Taking top 8 variants by coverage in window 9:36687544-36687554
2012-10-07 16:54:48,376 - DEBUG - Taking top 8 variants by coverage in window 9:36695942-36695951
2012-10-07 16:54:48,417 - DEBUG - Taking top 8 variants by coverage in window 9:36695991-36695992
2012-10-07 16:54:48,605 - DEBUG - Taking top 8 variants by coverage in window 9:36697753-36697754
2012-10-07 16:54:49,304 - DEBUG - Taking top 8 variants by coverage in window 9:36709258-36709263
2012-10-07 16:54:49,753 - DEBUG - Taking top 8 variants by coverage in window 9:36714102-36714103
2012-10-07 16:54:49,975 - DEBUG - Taking top 8 variants by coverage in window 9:36715768-36715769
2012-10-07 16:54:50,086 - DEBUG - Taking top 8 variants by coverage in window 9:36717171-36717172
2012-10-07 16:54:50,149 - DEBUG - Taking top 8 variants by coverage in window 9:36718284-36718285
2012-10-07 16:54:50,867 - DEBUG - Taking top 8 variants by coverage in window 9:36727387-36727389
2012-10-07 16:54:51,811 - DEBUG - Taking top 8 variants by coverage in window 9:36739656-36739660
2012-10-07 16:54:51,924 - DEBUG - Taking top 8 variants by coverage in window 9:36739750-36739755
2012-10-07 16:54:54,551 - DEBUG - Taking top 8 variants by coverage in window 9:36739838-36739842
2012-10-07 16:54:55,149 - DEBUG - Taking top 8 variants by coverage in window 9:36740333-36740334
2012-10-07 16:54:55,338 - DEBUG - Taking top 8 variants by coverage in window 9:36743896-36743899
2012-10-07 16:54:55,456 - DEBUG - Taking top 8 variants by coverage in window 9:36744463-36744464
2012-10-07 16:54:55,481 - DEBUG - Taking top 8 variants by coverage in window 9:36744481-36744487
2012-10-07 16:54:56,549 - DEBUG - Taking top 8 variants by coverage in window 9:36761636-36761642
2012-10-07 16:54:56,599 - DEBUG - Taking top 8 variants by coverage in window 9:36761656-36761658
2012-10-07 16:54:57,010 - DEBUG - Taking top 8 variants by coverage in window 9:36767996-36768004
2012-10-07 16:54:57,270 - DEBUG - Taking top 8 variants by coverage in window 9:36770703-36770704
2012-10-07 16:54:57,527 - DEBUG - Taking top 8 variants by coverage in window 9:36776751-36776752
2012-10-07 16:54:58,309 - DEBUG - Taking top 8 variants by coverage in window 9:36787076-36787077
2012-10-07 16:54:58,366 - DEBUG - Taking top 8 variants by coverage in window 9:36787619-36787623
2012-10-07 16:54:58,789 - DEBUG - Taking top 8 variants by coverage in window 9:36792494-36792495
2012-10-07 16:54:59,065 - DEBUG - Taking top 8 variants by coverage in window 9:36793420-36793421
2012-10-07 16:54:59,601 - DEBUG - Taking top 8 variants by coverage in window 9:36799909-36799910
2012-10-07 16:54:59,690 - DEBUG - Taking top 8 variants by coverage in window 9:36800003-36800004
2012-10-07 16:55:00,035 - DEBUG - Taking top 8 variants by coverage in window 9:36803244-36803245
2012-10-07 16:55:00,276 - DEBUG - Taking top 8 variants by coverage in window 9:36806395-36806397
2012-10-07 16:55:00,505 - DEBUG - Taking top 8 variants by coverage in window 9:36808032-36808033
2012-10-07 16:55:00,743 - DEBUG - Taking top 8 variants by coverage in window 9:36810031-36810032
2012-10-07 16:55:00,919 - DEBUG - Taking top 8 variants by coverage in window 9:36811483-36811484
2012-10-07 16:55:01,006 - DEBUG - Taking top 8 variants by coverage in window 9:36811809-36811812
2012-10-07 16:55:02,161 - DEBUG - Taking top 8 variants by coverage in window 9:36824681-36824682
2012-10-07 16:55:02,187 - DEBUG - Taking top 8 variants by coverage in window 9:36824685-36824687
2012-10-07 16:55:03,177 - DEBUG - Taking top 8 variants by coverage in window 9:36830532-36830533
2012-10-07 16:55:03,320 - DEBUG - Taking top 8 variants by coverage in window 9:36830554-36830555
2012-10-07 16:55:03,989 - DEBUG - Taking top 8 variants by coverage in window 9:36838969-36838970
2012-10-07 16:55:04,217 - DEBUG - Taking top 8 variants by coverage in window 9:36841338-36841339
2012-10-07 16:55:05,099 - DEBUG - Taking top 8 variants by coverage in window 9:36854682-36854686
2012-10-07 16:55:05,370 - DEBUG - Taking top 8 variants by coverage in window 9:36854725-36854726
2012-10-07 16:55:05,596 - DEBUG - Taking top 8 variants by coverage in window 9:36858447-36858448
2012-10-07 16:55:07,149 - DEBUG - Taking top 8 variants by coverage in window 9:36886196-36886197
2012-10-07 16:55:07,488 - DEBUG - Taking top 8 variants by coverage in window 9:36893302-36893303
2012-10-07 16:55:07,649 - DEBUG - Taking top 8 variants by coverage in window 9:36895023-36895040
2012-10-07 16:55:08,051 - DEBUG - Taking top 8 variants by coverage in window 9:36903380-36903381
2012-10-07 16:55:08,279 - DEBUG - Taking top 8 variants by coverage in window 9:36904691-36904692
2012-10-07 16:55:08,365 - DEBUG - Taking top 8 variants by coverage in window 9:36905092-36905093
2012-10-07 16:55:08,429 - DEBUG - Taking top 8 variants by coverage in window 9:36905846-36905847
2012-10-07 16:55:08,693 - DEBUG - Taking top 8 variants by coverage in window 9:36908427-36908428
2012-10-07 16:55:08,898 - DEBUG - Taking top 8 variants by coverage in window 9:36910296-36910297
2012-10-07 16:55:09,406 - DEBUG - Taking top 8 variants by coverage in window 9:36915519-36915520
2012-10-07 16:55:09,424 - DEBUG - Taking top 8 variants by coverage in window 9:36915535-36915536
2012-10-07 16:55:09,483 - DEBUG - Taking top 8 variants by coverage in window 9:36915578-36915582
2012-10-07 16:55:10,138 - DEBUG - Taking top 8 variants by coverage in window 9:36920461-36920462
2012-10-07 16:55:10,951 - DEBUG - Taking top 8 variants by coverage in window 9:36931907-36931944
2012-10-07 16:55:11,344 - DEBUG - Taking top 8 variants by coverage in window 9:36936705-36936706
2012-10-07 16:55:12,245 - DEBUG - Taking top 8 variants by coverage in window 9:36944399-36944400
2012-10-07 16:55:12,265 - DEBUG - Taking top 8 variants by coverage in window 9:36944401-36944411
2012-10-07 16:55:12,524 - DEBUG - Taking top 8 variants by coverage in window 9:36945706-36945707
2012-10-07 16:55:12,748 - DEBUG - Taking top 8 variants by coverage in window 9:36947858-36947868
2012-10-07 16:55:13,410 - DEBUG - Taking top 8 variants by coverage in window 9:36952230-36952231
2012-10-07 16:55:13,648 - DEBUG - Taking top 8 variants by coverage in window 9:36957369-36957370
2012-10-07 16:55:14,283 - DEBUG - Taking top 8 variants by coverage in window 9:36965709-36965710
2012-10-07 16:55:14,422 - DEBUG - Taking top 8 variants by coverage in window 9:36966527-36966528
2012-10-07 16:55:14,837 - DEBUG - Taking top 8 variants by coverage in window 9:36972934-36972935
2012-10-07 16:55:15,201 - DEBUG - Taking top 8 variants by coverage in window 9:36978996-36978997
2012-10-07 16:55:15,393 - DEBUG - Taking top 8 variants by coverage in window 9:36982379-36982380
2012-10-07 16:55:16,301 - DEBUG - Taking top 8 variants by coverage in window 9:36993861-36993865
2012-10-07 16:55:16,767 - DEBUG - Taking top 8 variants by coverage in window 9:36993867-36993869
2012-10-07 16:55:17,234 - DEBUG - Taking top 8 variants by coverage in window 9:36996722-36996726
2012-10-07 16:55:17,535 - DEBUG - Taking top 8 variants by coverage in window 9:36997671-36997676
2012-10-07 16:55:17,656 - DEBUG - Taking top 8 variants by coverage in window 9:36997685-36997686
2012-10-07 16:55:17,706 - DEBUG - Taking top 8 variants by coverage in window 9:36997696-36997697
2012-10-07 16:55:18,944 - DEBUG - Read 88981 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 16:55:19,176 - DEBUG - Read 93994 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 16:55:19,442 - DEBUG - Read 111666 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 16:55:19,738 - DEBUG - Read 111690 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 16:55:20,012 - DEBUG - Read 107753 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 16:55:20,271 - DEBUG - Read 102558 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 16:55:20,530 - DEBUG - Read 108897 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 16:55:20,782 - DEBUG - Read 93348 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 16:55:21,013 - DEBUG - Read 92304 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 16:55:21,261 - DEBUG - Read 94619 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 16:55:21,518 - DEBUG - Read 105384 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 16:55:21,756 - DEBUG - Read 91559 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 16:55:21,992 - DEBUG - Read 92417 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 16:55:22,239 - DEBUG - Read 103324 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 16:55:22,506 - DEBUG - Read 112223 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 16:55:22,744 - DEBUG - Read 85193 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 16:55:23,005 - DEBUG - Read 107690 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 16:55:23,270 - DEBUG - Read 104606 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 16:55:23,559 - DEBUG - Read 86360 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 16:55:23,804 - DEBUG - Read 89677 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 16:55:23,900 - DEBUG - Detected 19518 variants in 88981 reads
2012-10-07 16:55:24,064 - DEBUG - Detected 31136 variants in 93994 reads
2012-10-07 16:55:24,277 - DEBUG - Detected 39006 variants in 111666 reads
2012-10-07 16:55:24,523 - DEBUG - Detected 45751 variants in 111690 reads
2012-10-07 16:55:24,801 - DEBUG - Detected 52429 variants in 107753 reads
2012-10-07 16:55:25,105 - DEBUG - Detected 57753 variants in 102558 reads
2012-10-07 16:55:25,455 - DEBUG - Detected 70230 variants in 108897 reads
2012-10-07 16:55:25,845 - DEBUG - Detected 75276 variants in 93348 reads
2012-10-07 16:55:26,304 - DEBUG - Detected 81861 variants in 92304 reads
2012-10-07 16:55:26,756 - DEBUG - Detected 86394 variants in 94619 reads
2012-10-07 16:55:27,221 - DEBUG - Detected 90487 variants in 105384 reads
2012-10-07 16:55:27,701 - DEBUG - Detected 94200 variants in 91559 reads
2012-10-07 16:55:28,215 - DEBUG - Detected 98162 variants in 92417 reads
2012-10-07 16:55:28,754 - DEBUG - Detected 102999 variants in 103324 reads
2012-10-07 16:55:29,328 - DEBUG - Detected 109553 variants in 112223 reads
2012-10-07 16:55:29,969 - DEBUG - Detected 113240 variants in 85193 reads
2012-10-07 16:55:30,622 - DEBUG - Detected 116853 variants in 107690 reads
2012-10-07 16:55:31,272 - DEBUG - Detected 120665 variants in 104606 reads
2012-10-07 16:55:31,933 - DEBUG - Detected 124247 variants in 86360 reads
2012-10-07 16:55:32,615 - DEBUG - Detected 129268 variants in 89677 reads
2012-10-07 16:55:34,059 - DEBUG - Taking top 8 variants by coverage in window 9:37002432-37002433
2012-10-07 16:55:34,116 - DEBUG - Taking top 8 variants by coverage in window 9:37002472-37002473
2012-10-07 16:55:35,134 - DEBUG - Taking top 8 variants by coverage in window 9:37012306-37012307
2012-10-07 16:55:36,010 - DEBUG - Taking top 8 variants by coverage in window 9:37019381-37019394
2012-10-07 16:55:36,406 - DEBUG - Taking top 8 variants by coverage in window 9:37023580-37023581
2012-10-07 16:55:36,632 - DEBUG - Taking top 8 variants by coverage in window 9:37024342-37024343
2012-10-07 16:55:36,648 - DEBUG - Taking top 8 variants by coverage in window 9:37024344-37024345
2012-10-07 16:55:36,665 - DEBUG - Taking top 8 variants by coverage in window 9:37024346-37024347
2012-10-07 16:55:37,299 - DEBUG - Taking top 8 variants by coverage in window 9:37032378-37032380
2012-10-07 16:55:38,325 - DEBUG - Taking top 8 variants by coverage in window 9:37043797-37043798
2012-10-07 16:55:39,244 - DEBUG - Taking top 8 variants by coverage in window 9:37051833-37051834
2012-10-07 16:55:39,436 - DEBUG - Taking top 8 variants by coverage in window 9:37052910-37052911
2012-10-07 16:55:39,790 - DEBUG - Taking top 8 variants by coverage in window 9:37056232-37056235
2012-10-07 16:55:39,829 - DEBUG - Taking top 8 variants by coverage in window 9:37056236-37056237
2012-10-07 16:55:39,856 - DEBUG - Taking top 8 variants by coverage in window 9:37056238-37056239
2012-10-07 16:55:40,106 - DEBUG - Taking top 8 variants by coverage in window 9:37057752-37057753
2012-10-07 16:55:40,141 - DEBUG - Taking top 8 variants by coverage in window 9:37057756-37057757
2012-10-07 16:55:40,159 - DEBUG - Taking top 8 variants by coverage in window 9:37057757-37057758
2012-10-07 16:55:40,520 - DEBUG - Taking top 8 variants by coverage in window 9:37060949-37060950
2012-10-07 16:55:40,950 - DEBUG - Taking top 8 variants by coverage in window 9:37064951-37064952
2012-10-07 16:55:41,003 - DEBUG - Taking top 8 variants by coverage in window 9:37065368-37065369
2012-10-07 16:55:41,030 - DEBUG - Taking top 8 variants by coverage in window 9:37065375-37065381
2012-10-07 16:55:41,096 - DEBUG - Taking top 8 variants by coverage in window 9:37065404-37065405
2012-10-07 16:55:42,565 - DEBUG - Taking top 8 variants by coverage in window 9:37080243-37080244
2012-10-07 16:55:43,034 - DEBUG - Taking top 8 variants by coverage in window 9:37085561-37085563
2012-10-07 16:55:43,864 - DEBUG - Taking top 8 variants by coverage in window 9:37097626-37097627
2012-10-07 16:55:44,123 - DEBUG - Taking top 8 variants by coverage in window 9:37100844-37100845
2012-10-07 16:55:44,394 - DEBUG - Taking top 8 variants by coverage in window 9:37105255-37105256
2012-10-07 16:55:45,553 - DEBUG - Taking top 8 variants by coverage in window 9:37132867-37132868
2012-10-07 16:55:45,946 - DEBUG - Taking top 8 variants by coverage in window 9:37146039-37146040
2012-10-07 16:55:45,961 - DEBUG - Taking top 8 variants by coverage in window 9:37146060-37146061
2012-10-07 16:55:46,353 - DEBUG - Taking top 8 variants by coverage in window 9:37153547-37153548
2012-10-07 16:55:46,675 - DEBUG - Taking top 8 variants by coverage in window 9:37157481-37157482
2012-10-07 16:55:47,045 - DEBUG - Taking top 8 variants by coverage in window 9:37162100-37162101
2012-10-07 16:55:47,366 - DEBUG - Taking top 8 variants by coverage in window 9:37166113-37166114
2012-10-07 16:55:47,507 - DEBUG - Taking top 8 variants by coverage in window 9:37169017-37169018
2012-10-07 16:55:47,528 - DEBUG - Taking top 8 variants by coverage in window 9:37169055-37169056
2012-10-07 16:55:48,026 - DEBUG - Taking top 8 variants by coverage in window 9:37176062-37176063
2012-10-07 16:55:48,412 - DEBUG - Taking top 8 variants by coverage in window 9:37180413-37180414
2012-10-07 16:55:48,425 - DEBUG - Taking top 8 variants by coverage in window 9:37180416-37180417
2012-10-07 16:55:48,548 - DEBUG - Taking top 8 variants by coverage in window 9:37181729-37181730
2012-10-07 16:55:48,592 - DEBUG - Taking top 8 variants by coverage in window 9:37182000-37182001
2012-10-07 16:55:48,802 - DEBUG - Taking top 8 variants by coverage in window 9:37185425-37185426
2012-10-07 16:55:49,173 - DEBUG - Taking top 8 variants by coverage in window 9:37190285-37190286
2012-10-07 16:55:50,131 - DEBUG - Taking top 8 variants by coverage in window 9:37200902-37200903
2012-10-07 16:55:50,266 - DEBUG - Taking top 8 variants by coverage in window 9:37202589-37202590
2012-10-07 16:55:50,427 - DEBUG - Taking top 8 variants by coverage in window 9:37203638-37203639
2012-10-07 16:55:51,052 - DEBUG - Taking top 8 variants by coverage in window 9:37209891-37209892
2012-10-07 16:55:51,088 - DEBUG - Taking top 8 variants by coverage in window 9:37209964-37209965
2012-10-07 16:55:52,412 - DEBUG - Taking top 8 variants by coverage in window 9:37235745-37235746
2012-10-07 16:55:52,838 - DEBUG - Taking top 8 variants by coverage in window 9:37245063-37245068
2012-10-07 16:55:53,045 - DEBUG - Taking top 8 variants by coverage in window 9:37249351-37249352
2012-10-07 16:55:53,120 - DEBUG - Taking top 8 variants by coverage in window 9:37255738-37255739
2012-10-07 16:55:53,195 - DEBUG - Taking top 8 variants by coverage in window 9:37255946-37255947
2012-10-07 16:55:53,604 - DEBUG - Taking top 8 variants by coverage in window 9:37261302-37261304
2012-10-07 16:55:53,645 - DEBUG - Taking top 8 variants by coverage in window 9:37261411-37261412
2012-10-07 16:55:53,852 - DEBUG - Taking top 8 variants by coverage in window 9:37265501-37265502
2012-10-07 16:55:54,354 - DEBUG - Taking top 8 variants by coverage in window 9:37273627-37273628
2012-10-07 16:55:54,439 - DEBUG - Taking top 8 variants by coverage in window 9:37274302-37274303
2012-10-07 16:55:54,601 - DEBUG - Taking top 8 variants by coverage in window 9:37275320-37275321
2012-10-07 16:55:54,612 - DEBUG - Taking top 8 variants by coverage in window 9:37275326-37275327
2012-10-07 16:55:55,311 - DEBUG - Taking top 8 variants by coverage in window 9:37282485-37282486
2012-10-07 16:55:55,451 - DEBUG - Taking top 8 variants by coverage in window 9:37282509-37282510
2012-10-07 16:55:56,370 - DEBUG - Taking top 8 variants by coverage in window 9:37292602-37292603
2012-10-07 16:55:57,225 - DEBUG - Taking top 8 variants by coverage in window 9:37310631-37310632
2012-10-07 16:55:57,252 - DEBUG - Taking top 8 variants by coverage in window 9:37310673-37310674
2012-10-07 16:55:57,659 - DEBUG - Taking top 8 variants by coverage in window 9:37317878-37317881
2012-10-07 16:55:58,451 - DEBUG - Taking top 8 variants by coverage in window 9:37340484-37340487
2012-10-07 16:55:58,577 - DEBUG - Taking top 8 variants by coverage in window 9:37342507-37342508
2012-10-07 16:55:59,269 - DEBUG - Taking top 8 variants by coverage in window 9:37358809-37358810
2012-10-07 16:55:59,620 - DEBUG - Taking top 8 variants by coverage in window 9:37365975-37365976
2012-10-07 16:55:59,685 - DEBUG - Taking top 8 variants by coverage in window 9:37366833-37366840
2012-10-07 16:55:59,700 - DEBUG - Taking top 8 variants by coverage in window 9:37366849-37366850
2012-10-07 16:56:00,235 - DEBUG - Taking top 8 variants by coverage in window 9:37372409-37372410
2012-10-07 16:56:00,431 - DEBUG - Taking top 8 variants by coverage in window 9:37374213-37374214
2012-10-07 16:56:01,087 - DEBUG - Taking top 8 variants by coverage in window 9:37386128-37386129
2012-10-07 16:56:01,104 - DEBUG - Taking top 8 variants by coverage in window 9:37386151-37386152
2012-10-07 16:56:01,117 - DEBUG - Taking top 8 variants by coverage in window 9:37386170-37386171
2012-10-07 16:56:01,660 - DEBUG - Taking top 8 variants by coverage in window 9:37393855-37393856
2012-10-07 16:56:01,872 - DEBUG - Taking top 8 variants by coverage in window 9:37395141-37395143
2012-10-07 16:56:01,923 - DEBUG - Taking top 8 variants by coverage in window 9:37395155-37395156
2012-10-07 16:56:02,483 - DEBUG - Taking top 8 variants by coverage in window 9:37400180-37400181
2012-10-07 16:56:02,505 - DEBUG - Taking top 8 variants by coverage in window 9:37400232-37400233
2012-10-07 16:56:03,099 - DEBUG - Taking top 8 variants by coverage in window 9:37409721-37409722
2012-10-07 16:56:03,719 - DEBUG - Taking top 8 variants by coverage in window 9:37425643-37425644
2012-10-07 16:56:04,660 - DEBUG - Taking top 8 variants by coverage in window 9:37438426-37438435
2012-10-07 16:56:04,997 - DEBUG - Taking top 8 variants by coverage in window 9:37442194-37442195
2012-10-07 16:56:05,505 - DEBUG - Taking top 8 variants by coverage in window 9:37446215-37446218
2012-10-07 16:56:05,984 - DEBUG - Taking top 8 variants by coverage in window 9:37451976-37451977
2012-10-07 16:56:06,332 - DEBUG - Taking top 8 variants by coverage in window 9:37455153-37455154
2012-10-07 16:56:06,354 - DEBUG - Taking top 8 variants by coverage in window 9:37455157-37455158
2012-10-07 16:56:06,464 - DEBUG - Taking top 8 variants by coverage in window 9:37455492-37455493
2012-10-07 16:56:07,784 - DEBUG - Taking top 8 variants by coverage in window 9:37478333-37478334
2012-10-07 16:56:08,354 - DEBUG - Taking top 8 variants by coverage in window 9:37484495-37484496
2012-10-07 16:56:08,451 - DEBUG - Taking top 8 variants by coverage in window 9:37485926-37485927
2012-10-07 16:56:08,475 - DEBUG - Taking top 8 variants by coverage in window 9:37485949-37485950
2012-10-07 16:56:09,193 - DEBUG - Taking top 8 variants by coverage in window 9:37492376-37492377
2012-10-07 16:56:09,538 - DEBUG - Taking top 8 variants by coverage in window 9:37494630-37494635
2012-10-07 16:56:09,901 - DEBUG - Taking top 8 variants by coverage in window 9:37497354-37497355
2012-10-07 16:56:11,569 - DEBUG - Taking top 8 variants by coverage in window 9:37518165-37518173
2012-10-07 16:56:11,833 - DEBUG - Taking top 8 variants by coverage in window 9:37520725-37520728
2012-10-07 16:56:13,956 - DEBUG - Taking top 8 variants by coverage in window 9:37547200-37547201
2012-10-07 16:56:14,081 - DEBUG - Taking top 8 variants by coverage in window 9:37547705-37547706
2012-10-07 16:56:14,338 - DEBUG - Taking top 8 variants by coverage in window 9:37550038-37550039
2012-10-07 16:56:14,589 - DEBUG - Taking top 8 variants by coverage in window 9:37552245-37552246
2012-10-07 16:56:14,611 - DEBUG - Taking top 8 variants by coverage in window 9:37552401-37552403
2012-10-07 16:56:15,062 - DEBUG - Taking top 8 variants by coverage in window 9:37558701-37558703
2012-10-07 16:56:15,455 - DEBUG - Taking top 8 variants by coverage in window 9:37565346-37565352
2012-10-07 16:56:18,650 - DEBUG - Taking top 8 variants by coverage in window 9:37615812-37615813
2012-10-07 16:56:19,147 - DEBUG - Taking top 8 variants by coverage in window 9:37624971-37624972
2012-10-07 16:56:19,821 - DEBUG - Taking top 8 variants by coverage in window 9:37631007-37631008
2012-10-07 16:56:20,619 - DEBUG - Taking top 8 variants by coverage in window 9:37655198-37655204
2012-10-07 16:56:20,735 - DEBUG - Taking top 8 variants by coverage in window 9:37657087-37657088
2012-10-07 16:56:21,430 - DEBUG - Taking top 8 variants by coverage in window 9:37670668-37670671
2012-10-07 16:56:22,480 - DEBUG - Taking top 8 variants by coverage in window 9:37682615-37682616
2012-10-07 16:56:22,598 - DEBUG - Taking top 8 variants by coverage in window 9:37683273-37683274
2012-10-07 16:56:22,776 - DEBUG - Taking top 8 variants by coverage in window 9:37685725-37685728
2012-10-07 16:56:22,818 - DEBUG - Taking top 8 variants by coverage in window 9:37685968-37685969
2012-10-07 16:56:23,975 - DEBUG - Taking top 8 variants by coverage in window 9:37703886-37703892
2012-10-07 16:56:24,273 - DEBUG - Taking top 8 variants by coverage in window 9:37710533-37710534
2012-10-07 16:56:24,772 - DEBUG - Taking top 8 variants by coverage in window 9:37719346-37719347
2012-10-07 16:56:26,287 - DEBUG - Taking top 8 variants by coverage in window 9:37738585-37738601
2012-10-07 16:56:26,635 - DEBUG - Taking top 8 variants by coverage in window 9:37744143-37744148
2012-10-07 16:56:26,663 - DEBUG - Taking top 8 variants by coverage in window 9:37744157-37744158
2012-10-07 16:56:28,178 - DEBUG - Taking top 8 variants by coverage in window 9:37759247-37759248
2012-10-07 16:56:29,726 - DEBUG - Taking top 8 variants by coverage in window 9:37781853-37781855
2012-10-07 16:56:30,070 - DEBUG - Taking top 8 variants by coverage in window 9:37786787-37786788
2012-10-07 16:56:31,156 - DEBUG - Taking top 8 variants by coverage in window 9:37805573-37805581
2012-10-07 16:56:31,364 - DEBUG - Taking top 8 variants by coverage in window 9:37806901-37806902
2012-10-07 16:56:32,468 - DEBUG - Taking top 8 variants by coverage in window 9:37826386-37826388
2012-10-07 16:56:33,880 - DEBUG - Taking top 8 variants by coverage in window 9:37841985-37841986
2012-10-07 16:56:35,023 - DEBUG - Taking top 8 variants by coverage in window 9:37858083-37858084
2012-10-07 16:56:35,571 - DEBUG - Taking top 8 variants by coverage in window 9:37861351-37861352
2012-10-07 16:56:35,773 - DEBUG - Taking top 8 variants by coverage in window 9:37864345-37864346
2012-10-07 16:56:36,308 - DEBUG - Taking top 8 variants by coverage in window 9:37871949-37871950
2012-10-07 16:56:36,393 - DEBUG - Taking top 8 variants by coverage in window 9:37872706-37872708
2012-10-07 16:56:36,744 - DEBUG - Taking top 8 variants by coverage in window 9:37877304-37877305
2012-10-07 16:56:37,298 - DEBUG - Taking top 8 variants by coverage in window 9:37888322-37888327
2012-10-07 16:56:37,664 - DEBUG - Taking top 8 variants by coverage in window 9:37893864-37893865
2012-10-07 16:56:38,941 - DEBUG - Taking top 8 variants by coverage in window 9:37933805-37933806
2012-10-07 16:56:38,955 - DEBUG - Taking top 8 variants by coverage in window 9:37933822-37933824
2012-10-07 16:56:39,024 - DEBUG - Taking top 8 variants by coverage in window 9:37935794-37935800
2012-10-07 16:56:40,061 - DEBUG - Taking top 8 variants by coverage in window 9:37963753-37963754
2012-10-07 16:56:41,434 - DEBUG - Taking top 8 variants by coverage in window 9:37984583-37984584
2012-10-07 16:56:42,134 - DEBUG - Taking top 8 variants by coverage in window 9:37996782-37996786
2012-10-07 16:56:42,362 - DEBUG - Taking top 8 variants by coverage in window 9:37998764-37998775
2012-10-07 16:56:43,343 - DEBUG - Read 74556 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 16:56:43,541 - DEBUG - Read 80897 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 16:56:43,763 - DEBUG - Read 96488 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 16:56:43,998 - DEBUG - Read 94484 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 16:56:44,227 - DEBUG - Read 91416 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 16:56:44,434 - DEBUG - Read 86337 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 16:56:44,649 - DEBUG - Read 90462 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 16:56:44,849 - DEBUG - Read 77678 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 16:56:45,043 - DEBUG - Read 74679 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 16:56:45,247 - DEBUG - Read 80987 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 16:56:45,463 - DEBUG - Read 88374 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 16:56:45,648 - DEBUG - Read 74895 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 16:56:45,843 - DEBUG - Read 77960 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 16:56:46,047 - DEBUG - Read 88347 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 16:56:46,262 - DEBUG - Read 91143 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 16:56:46,443 - DEBUG - Read 69603 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 16:56:46,651 - DEBUG - Read 89129 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 16:56:46,871 - DEBUG - Read 90668 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 16:56:47,038 - DEBUG - Read 66380 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 16:56:47,236 - DEBUG - Read 77094 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 16:56:47,342 - DEBUG - Detected 27431 variants in 74556 reads
2012-10-07 16:56:47,518 - DEBUG - Detected 35346 variants in 80897 reads
2012-10-07 16:56:47,751 - DEBUG - Detected 48113 variants in 96488 reads
2012-10-07 16:56:48,020 - DEBUG - Detected 55311 variants in 94484 reads
2012-10-07 16:56:48,330 - DEBUG - Detected 61685 variants in 91416 reads
2012-10-07 16:56:48,663 - DEBUG - Detected 70386 variants in 86337 reads
2012-10-07 16:56:49,072 - DEBUG - Detected 83998 variants in 90462 reads
2012-10-07 16:56:49,499 - DEBUG - Detected 89120 variants in 77678 reads
2012-10-07 16:56:49,954 - DEBUG - Detected 93873 variants in 74679 reads
2012-10-07 16:56:50,434 - DEBUG - Detected 98665 variants in 80987 reads
2012-10-07 16:56:50,944 - DEBUG - Detected 103213 variants in 88374 reads
2012-10-07 16:56:51,466 - DEBUG - Detected 106575 variants in 74895 reads
2012-10-07 16:56:52,052 - DEBUG - Detected 112731 variants in 77960 reads
2012-10-07 16:56:52,634 - DEBUG - Detected 117451 variants in 88347 reads
2012-10-07 16:56:53,251 - DEBUG - Detected 123977 variants in 91143 reads
2012-10-07 16:56:53,878 - DEBUG - Detected 127400 variants in 69603 reads
2012-10-07 16:56:54,546 - DEBUG - Detected 131075 variants in 89129 reads
2012-10-07 16:56:55,298 - DEBUG - Detected 134985 variants in 90668 reads
2012-10-07 16:56:55,982 - DEBUG - Detected 138217 variants in 66380 reads
2012-10-07 16:56:56,698 - DEBUG - Detected 142829 variants in 77094 reads
2012-10-07 16:56:58,158 - DEBUG - Taking top 8 variants by coverage in window 9:38006428-38006429
2012-10-07 16:56:59,267 - DEBUG - Taking top 8 variants by coverage in window 9:38023069-38023075
2012-10-07 16:56:59,311 - DEBUG - Taking top 8 variants by coverage in window 9:38023105-38023107
2012-10-07 16:56:59,545 - DEBUG - Taking top 8 variants by coverage in window 9:38023109-38023110
2012-10-07 16:56:59,941 - DEBUG - Taking top 8 variants by coverage in window 9:38029403-38029416
2012-10-07 16:57:00,986 - DEBUG - Taking top 8 variants by coverage in window 9:38045656-38045657
2012-10-07 16:57:02,011 - DEBUG - Taking top 8 variants by coverage in window 9:38067537-38067547
2012-10-07 16:57:02,548 - DEBUG - Taking top 8 variants by coverage in window 9:38072284-38072285
2012-10-07 16:57:02,559 - DEBUG - Taking top 8 variants by coverage in window 9:38072300-38072301
2012-10-07 16:57:05,484 - DEBUG - Taking top 8 variants by coverage in window 9:38125666-38125667
2012-10-07 16:57:06,601 - DEBUG - Taking top 8 variants by coverage in window 9:38143924-38143925
2012-10-07 16:57:06,912 - DEBUG - Taking top 8 variants by coverage in window 9:38146843-38146845
2012-10-07 16:57:08,362 - DEBUG - Taking top 8 variants by coverage in window 9:38163330-38163332
2012-10-07 16:57:08,748 - DEBUG - Taking top 8 variants by coverage in window 9:38167209-38167210
2012-10-07 16:57:10,191 - DEBUG - Taking top 8 variants by coverage in window 9:38178751-38178753
2012-10-07 16:57:10,275 - DEBUG - Taking top 8 variants by coverage in window 9:38178754-38178757
2012-10-07 16:57:14,228 - DEBUG - Taking top 8 variants by coverage in window 9:38216456-38216457
2012-10-07 16:57:16,610 - DEBUG - Taking top 8 variants by coverage in window 9:38244928-38244929
2012-10-07 16:57:16,770 - DEBUG - Taking top 8 variants by coverage in window 9:38246702-38246703
2012-10-07 16:57:17,253 - DEBUG - Taking top 8 variants by coverage in window 9:38254904-38254906
2012-10-07 16:57:17,296 - DEBUG - Taking top 8 variants by coverage in window 9:38254929-38254930
2012-10-07 16:57:17,535 - DEBUG - Taking top 8 variants by coverage in window 9:38262561-38262563
2012-10-07 16:57:18,279 - DEBUG - Taking top 8 variants by coverage in window 9:38276073-38276074
2012-10-07 16:57:18,841 - DEBUG - Taking top 8 variants by coverage in window 9:38281312-38281313
2012-10-07 16:57:20,223 - DEBUG - Taking top 8 variants by coverage in window 9:38303892-38303894
2012-10-07 16:57:20,357 - DEBUG - Taking top 8 variants by coverage in window 9:38305389-38305390
2012-10-07 16:57:21,278 - DEBUG - Taking top 8 variants by coverage in window 9:38326899-38326900
2012-10-07 16:57:21,477 - DEBUG - Taking top 8 variants by coverage in window 9:38330977-38330978
2012-10-07 16:57:22,172 - DEBUG - Taking top 8 variants by coverage in window 9:38331628-38331629
2012-10-07 16:57:22,520 - DEBUG - Taking top 8 variants by coverage in window 9:38332251-38332257
2012-10-07 16:57:23,540 - DEBUG - Taking top 8 variants by coverage in window 9:38354226-38354227
2012-10-07 16:57:28,764 - DEBUG - Taking top 8 variants by coverage in window 9:38447417-38447418
2012-10-07 16:57:28,846 - DEBUG - Taking top 8 variants by coverage in window 9:38447497-38447498
2012-10-07 16:57:30,406 - DEBUG - Taking top 8 variants by coverage in window 9:38463534-38463538
2012-10-07 16:57:30,478 - DEBUG - Taking top 8 variants by coverage in window 9:38464094-38464095
2012-10-07 16:57:30,912 - DEBUG - Taking top 8 variants by coverage in window 9:38468664-38468665
2012-10-07 16:57:31,708 - DEBUG - Taking top 8 variants by coverage in window 9:38482858-38482867
2012-10-07 16:57:32,207 - DEBUG - Taking top 8 variants by coverage in window 9:38490659-38490660
2012-10-07 16:57:32,468 - DEBUG - Taking top 8 variants by coverage in window 9:38494639-38494640
2012-10-07 16:57:32,775 - DEBUG - Taking top 8 variants by coverage in window 9:38497252-38497261
2012-10-07 16:57:33,713 - DEBUG - Taking top 8 variants by coverage in window 9:38508631-38508632
2012-10-07 16:57:33,809 - DEBUG - Taking top 8 variants by coverage in window 9:38508971-38508981
2012-10-07 16:57:34,059 - DEBUG - Taking top 8 variants by coverage in window 9:38509008-38509009
2012-10-07 16:57:35,149 - DEBUG - Taking top 8 variants by coverage in window 9:38520470-38520472
2012-10-07 16:57:35,179 - DEBUG - Taking top 8 variants by coverage in window 9:38521376-38521377
2012-10-07 16:57:35,418 - DEBUG - Taking top 8 variants by coverage in window 9:38523986-38523989
2012-10-07 16:57:35,444 - DEBUG - Taking top 8 variants by coverage in window 9:38524127-38524129
2012-10-07 16:57:35,647 - DEBUG - Taking top 8 variants by coverage in window 9:38526477-38526478
2012-10-07 16:57:35,954 - DEBUG - Taking top 8 variants by coverage in window 9:38529286-38529287
2012-10-07 16:57:35,989 - DEBUG - Taking top 8 variants by coverage in window 9:38529297-38529298
2012-10-07 16:57:36,012 - DEBUG - Taking top 8 variants by coverage in window 9:38529298-38529299
2012-10-07 16:57:36,792 - DEBUG - Taking top 8 variants by coverage in window 9:38539796-38539797
2012-10-07 16:57:36,827 - DEBUG - Taking top 8 variants by coverage in window 9:38539832-38539833
2012-10-07 16:57:38,885 - DEBUG - Taking top 8 variants by coverage in window 9:38562405-38562421
2012-10-07 16:57:39,009 - DEBUG - Taking top 8 variants by coverage in window 9:38564633-38564635
2012-10-07 16:57:41,186 - DEBUG - Taking top 8 variants by coverage in window 9:38588825-38588826
2012-10-07 16:57:41,463 - DEBUG - Taking top 8 variants by coverage in window 9:38591507-38591508
2012-10-07 16:57:41,643 - DEBUG - Taking top 8 variants by coverage in window 9:38593865-38593866
2012-10-07 16:57:42,758 - DEBUG - Taking top 8 variants by coverage in window 9:38608615-38608624
2012-10-07 16:57:44,856 - DEBUG - Taking top 8 variants by coverage in window 9:38631757-38631758
2012-10-07 16:57:45,451 - DEBUG - Taking top 8 variants by coverage in window 9:38638964-38638965
2012-10-07 16:57:45,740 - DEBUG - Taking top 8 variants by coverage in window 9:38648272-38648273
2012-10-07 16:57:46,714 - DEBUG - Taking top 8 variants by coverage in window 9:38652724-38652725
2012-10-07 16:57:46,947 - DEBUG - Taking top 8 variants by coverage in window 9:38653158-38653159
2012-10-07 16:57:48,651 - DEBUG - Taking top 8 variants by coverage in window 9:38679159-38679160
2012-10-07 16:57:50,695 - DEBUG - Taking top 8 variants by coverage in window 9:38713877-38713879
2012-10-07 16:57:50,734 - DEBUG - Taking top 8 variants by coverage in window 9:38714217-38714218
2012-10-07 16:57:52,795 - DEBUG - Taking top 8 variants by coverage in window 9:38741117-38741132
2012-10-07 16:57:54,303 - DEBUG - Taking top 8 variants by coverage in window 9:38756320-38756321
2012-10-07 16:57:54,317 - DEBUG - Taking top 8 variants by coverage in window 9:38756412-38756413
2012-10-07 16:57:57,058 - DEBUG - Taking top 8 variants by coverage in window 9:38783160-38783163
2012-10-07 16:57:58,003 - DEBUG - Taking top 8 variants by coverage in window 9:38794125-38794126
2012-10-07 16:57:58,022 - DEBUG - Taking top 8 variants by coverage in window 9:38794154-38794155
2012-10-07 16:57:59,202 - DEBUG - Taking top 8 variants by coverage in window 9:38808462-38808463
2012-10-07 16:58:03,801 - DEBUG - Taking top 8 variants by coverage in window 9:38834720-38834722
2012-10-07 16:58:04,011 - DEBUG - Taking top 8 variants by coverage in window 9:38836052-38836055
2012-10-07 16:58:05,198 - DEBUG - Taking top 8 variants by coverage in window 9:38844036-38844037
2012-10-07 16:58:06,734 - DEBUG - Taking top 8 variants by coverage in window 9:38869821-38869822
2012-10-07 16:58:06,761 - DEBUG - Taking top 8 variants by coverage in window 9:38869925-38869926
2012-10-07 16:58:07,267 - DEBUG - Taking top 8 variants by coverage in window 9:38873959-38873960
2012-10-07 16:58:07,726 - DEBUG - Taking top 8 variants by coverage in window 9:38877222-38877223
2012-10-07 16:58:07,766 - DEBUG - Taking top 8 variants by coverage in window 9:38877313-38877314
2012-10-07 16:58:08,354 - DEBUG - Taking top 8 variants by coverage in window 9:38880690-38880693
2012-10-07 16:58:08,776 - DEBUG - Taking top 8 variants by coverage in window 9:38884159-38884165
2012-10-07 16:58:08,837 - DEBUG - Taking top 8 variants by coverage in window 9:38884579-38884580
2012-10-07 16:58:09,304 - DEBUG - Taking top 8 variants by coverage in window 9:38889453-38889459
2012-10-07 16:58:10,454 - DEBUG - Taking top 8 variants by coverage in window 9:38900507-38900509
2012-10-07 16:58:11,075 - DEBUG - Taking top 8 variants by coverage in window 9:38905760-38905762
2012-10-07 16:58:11,448 - DEBUG - Taking top 8 variants by coverage in window 9:38911231-38911232
2012-10-07 16:58:11,682 - DEBUG - Taking top 8 variants by coverage in window 9:38913471-38913472
2012-10-07 16:58:14,151 - DEBUG - Taking top 8 variants by coverage in window 9:38926686-38926687
2012-10-07 16:58:15,684 - DEBUG - Taking top 8 variants by coverage in window 9:38937536-38937539
2012-10-07 16:58:18,852 - DEBUG - Taking top 8 variants by coverage in window 9:38944430-38944437
2012-10-07 16:58:22,214 - DEBUG - Taking top 8 variants by coverage in window 9:38961801-38961802
2012-10-07 16:58:23,379 - DEBUG - Taking top 8 variants by coverage in window 9:38964319-38964320
2012-10-07 16:58:25,255 - DEBUG - Taking top 8 variants by coverage in window 9:38978612-38978613
2012-10-07 16:58:26,111 - DEBUG - Taking top 8 variants by coverage in window 9:38981210-38981211
2012-10-07 16:58:29,530 - DEBUG - Read 77883 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 16:58:29,736 - DEBUG - Read 79187 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 16:58:29,967 - DEBUG - Read 95890 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 16:58:30,212 - DEBUG - Read 92239 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 16:58:30,451 - DEBUG - Read 89833 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 16:58:30,668 - DEBUG - Read 86072 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 16:58:30,896 - DEBUG - Read 92037 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 16:58:31,111 - DEBUG - Read 80039 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 16:58:31,316 - DEBUG - Read 77230 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 16:58:31,528 - DEBUG - Read 79450 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 16:58:31,751 - DEBUG - Read 86435 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 16:58:31,944 - DEBUG - Read 74636 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 16:58:32,146 - DEBUG - Read 76033 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 16:58:32,354 - DEBUG - Read 85642 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 16:58:32,632 - DEBUG - Read 92753 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 16:58:32,824 - DEBUG - Read 71282 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 16:58:33,041 - DEBUG - Read 90293 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 16:58:33,266 - DEBUG - Read 88328 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 16:58:33,444 - DEBUG - Read 68905 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 16:58:33,654 - DEBUG - Read 75542 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 16:58:33,777 - DEBUG - Detected 28996 variants in 77883 reads
2012-10-07 16:58:33,975 - DEBUG - Detected 41667 variants in 79187 reads
2012-10-07 16:58:34,249 - DEBUG - Detected 53994 variants in 95890 reads
2012-10-07 16:58:34,566 - DEBUG - Detected 63937 variants in 92239 reads
2012-10-07 16:58:34,934 - DEBUG - Detected 70849 variants in 89833 reads
2012-10-07 16:58:35,361 - DEBUG - Detected 77562 variants in 86072 reads
2012-10-07 16:58:35,809 - DEBUG - Detected 89622 variants in 92037 reads
2012-10-07 16:58:36,306 - DEBUG - Detected 96777 variants in 80039 reads
2012-10-07 16:58:36,834 - DEBUG - Detected 102355 variants in 77230 reads
2012-10-07 16:58:37,393 - DEBUG - Detected 107703 variants in 79450 reads
2012-10-07 16:58:38,036 - DEBUG - Detected 112555 variants in 86435 reads
2012-10-07 16:58:38,644 - DEBUG - Detected 116193 variants in 74636 reads
2012-10-07 16:58:39,272 - DEBUG - Detected 120295 variants in 76033 reads
2012-10-07 16:58:39,941 - DEBUG - Detected 124864 variants in 85642 reads
2012-10-07 16:58:40,636 - DEBUG - Detected 131636 variants in 92753 reads
2012-10-07 16:58:41,405 - DEBUG - Detected 135435 variants in 71282 reads
2012-10-07 16:58:42,153 - DEBUG - Detected 139796 variants in 90293 reads
2012-10-07 16:58:42,928 - DEBUG - Detected 144584 variants in 88328 reads
2012-10-07 16:58:43,693 - DEBUG - Detected 148031 variants in 68905 reads
2012-10-07 16:58:44,551 - DEBUG - Detected 152720 variants in 75542 reads
2012-10-07 16:58:45,870 - DEBUG - Taking top 8 variants by coverage in window 9:39000556-39000557
2012-10-07 16:58:46,360 - DEBUG - Taking top 8 variants by coverage in window 9:39008906-39008907
2012-10-07 16:58:46,382 - DEBUG - Taking top 8 variants by coverage in window 9:39008951-39008952
2012-10-07 16:58:46,684 - DEBUG - Taking top 8 variants by coverage in window 9:39010302-39010304
2012-10-07 16:58:48,295 - DEBUG - Taking top 8 variants by coverage in window 9:39014552-39014555
2012-10-07 16:58:48,310 - DEBUG - Taking top 8 variants by coverage in window 9:39014557-39014558
2012-10-07 16:58:50,829 - DEBUG - Taking top 8 variants by coverage in window 9:39019362-39019363
2012-10-07 16:58:52,381 - DEBUG - Taking top 8 variants by coverage in window 9:39027990-39027993
2012-10-07 16:58:52,623 - DEBUG - Taking top 8 variants by coverage in window 9:39030543-39030544
2012-10-07 16:58:58,003 - DEBUG - Taking top 8 variants by coverage in window 9:39069093-39069094
2012-10-07 16:58:58,154 - DEBUG - Taking top 8 variants by coverage in window 9:39069562-39069563
2012-10-07 16:58:59,236 - DEBUG - Taking top 8 variants by coverage in window 9:39081093-39081094
2012-10-07 16:58:59,346 - DEBUG - Taking top 8 variants by coverage in window 9:39081646-39081647
2012-10-07 16:58:59,583 - DEBUG - Taking top 8 variants by coverage in window 9:39084195-39084196
2012-10-07 16:59:00,026 - DEBUG - Taking top 8 variants by coverage in window 9:39089043-39089044
2012-10-07 16:59:00,995 - DEBUG - Taking top 8 variants by coverage in window 9:39091499-39091503
2012-10-07 16:59:02,217 - DEBUG - Taking top 8 variants by coverage in window 9:39095010-39095011
2012-10-07 16:59:02,627 - DEBUG - Taking top 8 variants by coverage in window 9:39096371-39096372
2012-10-07 16:59:02,649 - DEBUG - Taking top 8 variants by coverage in window 9:39096373-39096374
2012-10-07 16:59:04,497 - DEBUG - Taking top 8 variants by coverage in window 9:39101425-39101427
2012-10-07 16:59:04,538 - DEBUG - Taking top 8 variants by coverage in window 9:39101442-39101443
2012-10-07 16:59:04,624 - DEBUG - Taking top 8 variants by coverage in window 9:39101563-39101564
2012-10-07 16:59:04,725 - DEBUG - Taking top 8 variants by coverage in window 9:39101670-39101673
2012-10-07 16:59:04,891 - DEBUG - Taking top 8 variants by coverage in window 9:39101997-39101998
2012-10-07 16:59:09,358 - DEBUG - Taking top 8 variants by coverage in window 9:39119942-39119943
2012-10-07 16:59:09,389 - DEBUG - Taking top 8 variants by coverage in window 9:39120201-39120202
2012-10-07 16:59:11,801 - DEBUG - Taking top 8 variants by coverage in window 9:39148446-39148448
2012-10-07 16:59:12,106 - DEBUG - Taking top 8 variants by coverage in window 9:39150562-39150563
2012-10-07 16:59:12,245 - DEBUG - Taking top 8 variants by coverage in window 9:39151310-39151312
2012-10-07 16:59:12,392 - DEBUG - Taking top 8 variants by coverage in window 9:39152254-39152260
2012-10-07 16:59:14,271 - DEBUG - Taking top 8 variants by coverage in window 9:39167896-39167904
2012-10-07 16:59:14,608 - DEBUG - Taking top 8 variants by coverage in window 9:39169584-39169585
2012-10-07 16:59:15,138 - DEBUG - Taking top 8 variants by coverage in window 9:39172364-39172365
2012-10-07 16:59:15,656 - DEBUG - Taking top 8 variants by coverage in window 9:39175779-39175781
2012-10-07 16:59:15,754 - DEBUG - Taking top 8 variants by coverage in window 9:39177420-39177421
2012-10-07 16:59:16,761 - DEBUG - Taking top 8 variants by coverage in window 9:39181659-39181660
2012-10-07 16:59:21,036 - DEBUG - Taking top 8 variants by coverage in window 9:39236546-39236548
2012-10-07 16:59:21,248 - DEBUG - Taking top 8 variants by coverage in window 9:39237331-39237332
2012-10-07 16:59:21,290 - DEBUG - Taking top 8 variants by coverage in window 9:39237383-39237388
2012-10-07 16:59:22,988 - DEBUG - Taking top 8 variants by coverage in window 9:39250604-39250614
2012-10-07 16:59:24,532 - DEBUG - Taking top 8 variants by coverage in window 9:39267848-39267849
2012-10-07 16:59:24,551 - DEBUG - Taking top 8 variants by coverage in window 9:39267856-39267857
2012-10-07 16:59:25,191 - DEBUG - Taking top 8 variants by coverage in window 9:39272443-39272444
2012-10-07 16:59:25,844 - DEBUG - Taking top 8 variants by coverage in window 9:39281364-39281365
2012-10-07 16:59:27,719 - DEBUG - Taking top 8 variants by coverage in window 9:39302758-39302770
2012-10-07 16:59:29,327 - DEBUG - Taking top 8 variants by coverage in window 9:39323775-39323781
2012-10-07 16:59:29,676 - DEBUG - Taking top 8 variants by coverage in window 9:39329594-39329596
2012-10-07 16:59:29,847 - DEBUG - Taking top 8 variants by coverage in window 9:39331084-39331085
2012-10-07 16:59:30,006 - DEBUG - Taking top 8 variants by coverage in window 9:39332596-39332597
2012-10-07 16:59:30,218 - DEBUG - Taking top 8 variants by coverage in window 9:39341026-39341027
2012-10-07 16:59:30,578 - DEBUG - Taking top 8 variants by coverage in window 9:39344221-39344222
2012-10-07 16:59:31,855 - DEBUG - Taking top 8 variants by coverage in window 9:39353194-39353195
2012-10-07 16:59:32,429 - DEBUG - Taking top 8 variants by coverage in window 9:39359555-39359556
2012-10-07 16:59:32,821 - DEBUG - Taking top 8 variants by coverage in window 9:39364279-39364283
2012-10-07 16:59:32,869 - DEBUG - Taking top 8 variants by coverage in window 9:39364284-39364288
2012-10-07 16:59:33,168 - DEBUG - Taking top 8 variants by coverage in window 9:39367867-39367868
2012-10-07 16:59:35,028 - DEBUG - Taking top 8 variants by coverage in window 9:39388090-39388095
2012-10-07 16:59:35,396 - DEBUG - Taking top 8 variants by coverage in window 9:39391819-39391822
2012-10-07 16:59:35,677 - DEBUG - Taking top 8 variants by coverage in window 9:39393845-39393846
2012-10-07 16:59:35,704 - DEBUG - Taking top 8 variants by coverage in window 9:39393977-39393978
2012-10-07 16:59:35,720 - DEBUG - Taking top 8 variants by coverage in window 9:39393998-39393999
2012-10-07 16:59:36,310 - DEBUG - Taking top 8 variants by coverage in window 9:39399796-39399804
2012-10-07 16:59:36,484 - DEBUG - Taking top 8 variants by coverage in window 9:39401222-39401223
2012-10-07 16:59:36,912 - DEBUG - Taking top 8 variants by coverage in window 9:39406069-39406071
2012-10-07 16:59:37,379 - DEBUG - Taking top 8 variants by coverage in window 9:39411983-39411984
2012-10-07 16:59:39,138 - DEBUG - Taking top 8 variants by coverage in window 9:39433681-39433685
2012-10-07 16:59:39,210 - DEBUG - Taking top 8 variants by coverage in window 9:39433915-39433916
2012-10-07 16:59:39,533 - DEBUG - Taking top 8 variants by coverage in window 9:39437600-39437606
2012-10-07 16:59:39,590 - DEBUG - Taking top 8 variants by coverage in window 9:39438173-39438174
2012-10-07 16:59:39,629 - DEBUG - Taking top 8 variants by coverage in window 9:39438217-39438219
2012-10-07 16:59:41,855 - DEBUG - Taking top 8 variants by coverage in window 9:39464248-39464249
2012-10-07 16:59:42,207 - DEBUG - Taking top 8 variants by coverage in window 9:39467228-39467229
2012-10-07 16:59:42,221 - DEBUG - Taking top 8 variants by coverage in window 9:39467229-39467230
2012-10-07 16:59:43,670 - DEBUG - Taking top 8 variants by coverage in window 9:39482373-39482374
2012-10-07 16:59:43,836 - DEBUG - Taking top 8 variants by coverage in window 9:39484674-39484675
2012-10-07 16:59:44,443 - DEBUG - Taking top 8 variants by coverage in window 9:39492860-39492861
2012-10-07 16:59:44,906 - DEBUG - Taking top 8 variants by coverage in window 9:39501087-39501088
2012-10-07 16:59:45,013 - DEBUG - Taking top 8 variants by coverage in window 9:39503437-39503438
2012-10-07 16:59:45,300 - DEBUG - Taking top 8 variants by coverage in window 9:39508934-39508935
2012-10-07 16:59:45,617 - DEBUG - Taking top 8 variants by coverage in window 9:39509270-39509273
2012-10-07 16:59:45,638 - DEBUG - Taking top 8 variants by coverage in window 9:39509276-39509277
2012-10-07 16:59:45,740 - DEBUG - Taking top 8 variants by coverage in window 9:39509562-39509563
2012-10-07 16:59:46,115 - DEBUG - Taking top 8 variants by coverage in window 9:39514007-39514008
2012-10-07 16:59:46,579 - DEBUG - Taking top 8 variants by coverage in window 9:39520843-39520844
2012-10-07 16:59:46,590 - DEBUG - Taking top 8 variants by coverage in window 9:39520845-39520846
2012-10-07 16:59:46,643 - DEBUG - Taking top 8 variants by coverage in window 9:39521149-39521150
2012-10-07 16:59:47,138 - DEBUG - Taking top 8 variants by coverage in window 9:39530632-39530636
2012-10-07 16:59:47,993 - DEBUG - Taking top 8 variants by coverage in window 9:39542422-39542427
2012-10-07 16:59:48,335 - DEBUG - Taking top 8 variants by coverage in window 9:39547941-39547942
2012-10-07 16:59:48,715 - DEBUG - Taking top 8 variants by coverage in window 9:39553628-39553629
2012-10-07 16:59:48,955 - DEBUG - Taking top 8 variants by coverage in window 9:39557861-39557863
2012-10-07 16:59:49,836 - DEBUG - Taking top 8 variants by coverage in window 9:39573146-39573147
2012-10-07 16:59:52,200 - DEBUG - Taking top 8 variants by coverage in window 9:39597954-39597956
2012-10-07 16:59:53,861 - DEBUG - Taking top 8 variants by coverage in window 9:39632342-39632343
2012-10-07 16:59:53,879 - DEBUG - Taking top 8 variants by coverage in window 9:39632684-39632689
2012-10-07 16:59:53,957 - DEBUG - Taking top 8 variants by coverage in window 9:39632711-39632712
2012-10-07 16:59:54,750 - DEBUG - Taking top 8 variants by coverage in window 9:39644330-39644331
2012-10-07 16:59:55,139 - DEBUG - Taking top 8 variants by coverage in window 9:39648813-39648816
2012-10-07 16:59:55,219 - DEBUG - Taking top 8 variants by coverage in window 9:39649116-39649118
2012-10-07 16:59:55,735 - DEBUG - Taking top 8 variants by coverage in window 9:39657013-39657014
2012-10-07 16:59:55,791 - DEBUG - Taking top 8 variants by coverage in window 9:39659104-39659105
2012-10-07 16:59:55,841 - DEBUG - Taking top 8 variants by coverage in window 9:39659551-39659553
2012-10-07 16:59:55,877 - DEBUG - Taking top 8 variants by coverage in window 9:39660608-39660609
2012-10-07 16:59:56,149 - DEBUG - Taking top 8 variants by coverage in window 9:39662534-39662535
2012-10-07 16:59:56,302 - DEBUG - Taking top 8 variants by coverage in window 9:39663171-39663172
2012-10-07 16:59:56,682 - DEBUG - Taking top 8 variants by coverage in window 9:39671857-39671860
2012-10-07 16:59:58,776 - DEBUG - Taking top 8 variants by coverage in window 9:39712327-39712328
2012-10-07 16:59:58,786 - DEBUG - Taking top 8 variants by coverage in window 9:39712329-39712330
2012-10-07 16:59:59,023 - DEBUG - Taking top 8 variants by coverage in window 9:39715123-39715124
2012-10-07 16:59:59,536 - DEBUG - Taking top 8 variants by coverage in window 9:39721565-39721568
2012-10-07 16:59:59,789 - DEBUG - Taking top 8 variants by coverage in window 9:39725795-39725796
2012-10-07 17:00:00,395 - DEBUG - Taking top 8 variants by coverage in window 9:39739706-39739707
2012-10-07 17:00:00,819 - DEBUG - Taking top 8 variants by coverage in window 9:39744704-39744705
2012-10-07 17:00:01,385 - DEBUG - Taking top 8 variants by coverage in window 9:39755406-39755407
2012-10-07 17:00:01,527 - DEBUG - Taking top 8 variants by coverage in window 9:39757258-39757259
2012-10-07 17:00:01,819 - DEBUG - Taking top 8 variants by coverage in window 9:39760999-39761005
2012-10-07 17:00:02,460 - DEBUG - Taking top 8 variants by coverage in window 9:39766780-39766781
2012-10-07 17:00:02,478 - DEBUG - Taking top 8 variants by coverage in window 9:39766799-39766800
2012-10-07 17:00:02,521 - DEBUG - Taking top 8 variants by coverage in window 9:39767056-39767058
2012-10-07 17:00:03,209 - DEBUG - Taking top 8 variants by coverage in window 9:39774851-39774852
2012-10-07 17:00:03,304 - DEBUG - Taking top 8 variants by coverage in window 9:39775264-39775265
2012-10-07 17:00:03,350 - DEBUG - Taking top 8 variants by coverage in window 9:39775671-39775673
2012-10-07 17:00:05,283 - DEBUG - Taking top 8 variants by coverage in window 9:39805793-39805798
2012-10-07 17:00:05,727 - DEBUG - Taking top 8 variants by coverage in window 9:39816782-39816783
2012-10-07 17:00:07,337 - DEBUG - Taking top 8 variants by coverage in window 9:39845007-39845008
2012-10-07 17:00:08,633 - DEBUG - Taking top 8 variants by coverage in window 9:39865316-39865317
2012-10-07 17:00:09,638 - DEBUG - Taking top 8 variants by coverage in window 9:39867742-39867745
2012-10-07 17:00:09,712 - DEBUG - Taking top 8 variants by coverage in window 9:39867747-39867748
2012-10-07 17:00:10,491 - DEBUG - Taking top 8 variants by coverage in window 9:39869208-39869209
2012-10-07 17:00:10,787 - DEBUG - Taking top 8 variants by coverage in window 9:39871696-39871697
2012-10-07 17:00:11,074 - DEBUG - Taking top 8 variants by coverage in window 9:39882896-39882897
2012-10-07 17:00:11,654 - DEBUG - Taking top 8 variants by coverage in window 9:39887923-39887924
2012-10-07 17:00:13,254 - DEBUG - Taking top 8 variants by coverage in window 9:39904597-39904600
2012-10-07 17:00:13,977 - DEBUG - Taking top 8 variants by coverage in window 9:39911989-39911990
2012-10-07 17:00:14,118 - DEBUG - Taking top 8 variants by coverage in window 9:39915610-39915611
2012-10-07 17:00:14,703 - DEBUG - Taking top 8 variants by coverage in window 9:39921427-39921428
2012-10-07 17:00:15,705 - DEBUG - Taking top 8 variants by coverage in window 9:39931618-39931621
2012-10-07 17:00:16,183 - DEBUG - Taking top 8 variants by coverage in window 9:39935938-39935939
2012-10-07 17:00:16,267 - DEBUG - Taking top 8 variants by coverage in window 9:39936228-39936229
2012-10-07 17:00:16,501 - DEBUG - Taking top 8 variants by coverage in window 9:39936986-39936987
2012-10-07 17:00:16,934 - DEBUG - Taking top 8 variants by coverage in window 9:39942302-39942306
2012-10-07 17:00:16,953 - DEBUG - Taking top 8 variants by coverage in window 9:39942484-39942492
2012-10-07 17:00:17,371 - DEBUG - Taking top 8 variants by coverage in window 9:39950145-39950146
2012-10-07 17:00:17,745 - DEBUG - Taking top 8 variants by coverage in window 9:39956370-39956374
2012-10-07 17:00:18,016 - DEBUG - Taking top 8 variants by coverage in window 9:39961463-39961465
2012-10-07 17:00:18,536 - DEBUG - Taking top 8 variants by coverage in window 9:39965508-39965509
2012-10-07 17:00:19,662 - DEBUG - Taking top 8 variants by coverage in window 9:39972880-39972881
2012-10-07 17:00:19,716 - DEBUG - Taking top 8 variants by coverage in window 9:39973252-39973253
2012-10-07 17:00:20,656 - DEBUG - Taking top 8 variants by coverage in window 9:39989075-39989076
2012-10-07 17:00:20,808 - DEBUG - Taking top 8 variants by coverage in window 9:39991830-39991831
2012-10-07 17:00:20,836 - DEBUG - Taking top 8 variants by coverage in window 9:39991832-39991833
2012-10-07 17:00:22,408 - DEBUG - Read 100229 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 17:00:22,664 - DEBUG - Read 110031 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 17:00:22,934 - DEBUG - Read 125677 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 17:00:23,243 - DEBUG - Read 128543 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 17:00:23,532 - DEBUG - Read 119413 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 17:00:23,790 - DEBUG - Read 114669 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 17:00:24,060 - DEBUG - Read 120542 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 17:00:24,327 - DEBUG - Read 110235 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 17:00:24,577 - DEBUG - Read 105318 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 17:00:24,830 - DEBUG - Read 104473 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 17:00:25,102 - DEBUG - Read 116180 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 17:00:25,346 - DEBUG - Read 106208 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 17:00:25,600 - DEBUG - Read 107499 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 17:00:25,856 - DEBUG - Read 118253 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 17:00:26,141 - DEBUG - Read 127360 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 17:00:26,378 - DEBUG - Read 98294 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 17:00:26,648 - DEBUG - Read 122472 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 17:00:26,919 - DEBUG - Read 116550 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 17:00:27,158 - DEBUG - Read 104992 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 17:00:27,405 - DEBUG - Read 100243 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 17:00:27,516 - DEBUG - Detected 25784 variants in 100229 reads
2012-10-07 17:00:27,718 - DEBUG - Detected 36757 variants in 110031 reads
2012-10-07 17:00:27,968 - DEBUG - Detected 44973 variants in 125677 reads
2012-10-07 17:00:28,259 - DEBUG - Detected 54671 variants in 128543 reads
2012-10-07 17:00:28,580 - DEBUG - Detected 61905 variants in 119413 reads
2012-10-07 17:00:28,928 - DEBUG - Detected 68501 variants in 114669 reads
2012-10-07 17:00:29,326 - DEBUG - Detected 83169 variants in 120542 reads
2012-10-07 17:00:29,813 - DEBUG - Detected 89341 variants in 110235 reads
2012-10-07 17:00:30,291 - DEBUG - Detected 95569 variants in 105318 reads
2012-10-07 17:00:30,797 - DEBUG - Detected 100619 variants in 104473 reads
2012-10-07 17:00:31,334 - DEBUG - Detected 105775 variants in 116180 reads
2012-10-07 17:00:31,889 - DEBUG - Detected 110648 variants in 106208 reads
2012-10-07 17:00:32,464 - DEBUG - Detected 115410 variants in 107499 reads
2012-10-07 17:00:33,121 - DEBUG - Detected 120010 variants in 118253 reads
2012-10-07 17:00:33,767 - DEBUG - Detected 127805 variants in 127360 reads
2012-10-07 17:00:34,420 - DEBUG - Detected 132260 variants in 98294 reads
2012-10-07 17:00:35,128 - DEBUG - Detected 136460 variants in 122472 reads
2012-10-07 17:00:35,903 - DEBUG - Detected 141745 variants in 116550 reads
2012-10-07 17:00:36,643 - DEBUG - Detected 146794 variants in 104992 reads
2012-10-07 17:00:37,397 - DEBUG - Detected 151473 variants in 100243 reads
2012-10-07 17:00:38,959 - DEBUG - Taking top 8 variants by coverage in window 9:40007593-40007594
2012-10-07 17:00:40,447 - DEBUG - Taking top 8 variants by coverage in window 9:40029936-40029944
2012-10-07 17:00:41,060 - DEBUG - Taking top 8 variants by coverage in window 9:40039810-40039811
2012-10-07 17:00:41,341 - DEBUG - Taking top 8 variants by coverage in window 9:40042336-40042337
2012-10-07 17:00:41,843 - DEBUG - Taking top 8 variants by coverage in window 9:40048342-40048343
2012-10-07 17:00:42,269 - DEBUG - Taking top 8 variants by coverage in window 9:40052244-40052245
2012-10-07 17:00:42,279 - DEBUG - Taking top 8 variants by coverage in window 9:40052246-40052251
2012-10-07 17:00:42,384 - DEBUG - Taking top 8 variants by coverage in window 9:40052437-40052439
2012-10-07 17:00:42,936 - DEBUG - Taking top 8 variants by coverage in window 9:40056346-40056347
2012-10-07 17:00:42,987 - DEBUG - Taking top 8 variants by coverage in window 9:40056359-40056360
2012-10-07 17:00:43,365 - DEBUG - Taking top 8 variants by coverage in window 9:40060622-40060624
2012-10-07 17:00:43,537 - DEBUG - Taking top 8 variants by coverage in window 9:40061766-40061767
2012-10-07 17:00:43,604 - DEBUG - Taking top 8 variants by coverage in window 9:40068258-40068259
2012-10-07 17:00:44,032 - DEBUG - Taking top 8 variants by coverage in window 9:40070708-40070709
2012-10-07 17:00:44,389 - DEBUG - Taking top 8 variants by coverage in window 9:40072914-40072916
2012-10-07 17:00:44,829 - DEBUG - Taking top 8 variants by coverage in window 9:40078592-40078606
2012-10-07 17:00:45,985 - DEBUG - Taking top 8 variants by coverage in window 9:40091686-40091687
2012-10-07 17:00:46,005 - DEBUG - Taking top 8 variants by coverage in window 9:40092073-40092074
2012-10-07 17:00:46,252 - DEBUG - Taking top 8 variants by coverage in window 9:40093667-40093668
2012-10-07 17:00:46,343 - DEBUG - Taking top 8 variants by coverage in window 9:40094567-40094570
2012-10-07 17:00:46,370 - DEBUG - Taking top 8 variants by coverage in window 9:40094623-40094624
2012-10-07 17:00:46,462 - DEBUG - Taking top 8 variants by coverage in window 9:40095843-40095844
2012-10-07 17:00:47,191 - DEBUG - Taking top 8 variants by coverage in window 9:40106935-40106936
2012-10-07 17:00:47,241 - DEBUG - Taking top 8 variants by coverage in window 9:40108179-40108180
2012-10-07 17:00:48,031 - DEBUG - Taking top 8 variants by coverage in window 9:40122057-40122058
2012-10-07 17:00:48,105 - DEBUG - Taking top 8 variants by coverage in window 9:40122377-40122378
2012-10-07 17:00:48,114 - DEBUG - Taking top 8 variants by coverage in window 9:40122395-40122396
2012-10-07 17:00:48,205 - DEBUG - Taking top 8 variants by coverage in window 9:40123917-40123918
2012-10-07 17:00:48,519 - DEBUG - Taking top 8 variants by coverage in window 9:40127345-40127346
2012-10-07 17:00:49,415 - DEBUG - Taking top 8 variants by coverage in window 9:40137837-40137838
2012-10-07 17:00:49,714 - DEBUG - Taking top 8 variants by coverage in window 9:40141282-40141283
2012-10-07 17:00:50,582 - DEBUG - Taking top 8 variants by coverage in window 9:40156354-40156355
2012-10-07 17:00:50,707 - DEBUG - Taking top 8 variants by coverage in window 9:40158803-40158815
2012-10-07 17:00:51,226 - DEBUG - Taking top 8 variants by coverage in window 9:40165829-40165830
2012-10-07 17:00:51,264 - DEBUG - Taking top 8 variants by coverage in window 9:40165888-40165889
2012-10-07 17:00:51,658 - DEBUG - Taking top 8 variants by coverage in window 9:40170421-40170422
2012-10-07 17:00:52,082 - DEBUG - Taking top 8 variants by coverage in window 9:40174248-40174249
2012-10-07 17:00:52,313 - DEBUG - Taking top 8 variants by coverage in window 9:40175350-40175351
2012-10-07 17:00:52,707 - DEBUG - Taking top 8 variants by coverage in window 9:40179371-40179372
2012-10-07 17:00:52,743 - DEBUG - Taking top 8 variants by coverage in window 9:40179445-40179447
2012-10-07 17:00:53,014 - DEBUG - Taking top 8 variants by coverage in window 9:40182386-40182387
2012-10-07 17:00:53,251 - DEBUG - Taking top 8 variants by coverage in window 9:40187311-40187312
2012-10-07 17:00:53,713 - DEBUG - Taking top 8 variants by coverage in window 9:40195791-40195792
2012-10-07 17:00:53,742 - DEBUG - Taking top 8 variants by coverage in window 9:40195982-40195983
2012-10-07 17:00:54,607 - DEBUG - Taking top 8 variants by coverage in window 9:40206905-40206906
2012-10-07 17:00:54,942 - DEBUG - Taking top 8 variants by coverage in window 9:40208778-40208779
2012-10-07 17:00:55,027 - DEBUG - Taking top 8 variants by coverage in window 9:40208791-40208792
2012-10-07 17:00:55,357 - DEBUG - Taking top 8 variants by coverage in window 9:40209699-40209700
2012-10-07 17:00:55,546 - DEBUG - Taking top 8 variants by coverage in window 9:40210691-40210695
2012-10-07 17:00:55,876 - DEBUG - Taking top 8 variants by coverage in window 9:40211072-40211078
2012-10-07 17:00:56,897 - DEBUG - Taking top 8 variants by coverage in window 9:40224165-40224166
2012-10-07 17:00:58,117 - DEBUG - Taking top 8 variants by coverage in window 9:40241011-40241012
2012-10-07 17:00:58,655 - DEBUG - Taking top 8 variants by coverage in window 9:40249230-40249231
2012-10-07 17:00:58,673 - DEBUG - Taking top 8 variants by coverage in window 9:40249232-40249233
2012-10-07 17:00:59,033 - DEBUG - Taking top 8 variants by coverage in window 9:40254461-40254462
2012-10-07 17:00:59,512 - DEBUG - Taking top 8 variants by coverage in window 9:40259552-40259556
2012-10-07 17:00:59,853 - DEBUG - Taking top 8 variants by coverage in window 9:40262177-40262180
2012-10-07 17:01:00,064 - DEBUG - Taking top 8 variants by coverage in window 9:40264647-40264648
2012-10-07 17:01:00,083 - DEBUG - Taking top 8 variants by coverage in window 9:40264652-40264653
2012-10-07 17:01:00,426 - DEBUG - Taking top 8 variants by coverage in window 9:40269447-40269448
2012-10-07 17:01:00,554 - DEBUG - Taking top 8 variants by coverage in window 9:40270029-40270030
2012-10-07 17:01:00,607 - DEBUG - Taking top 8 variants by coverage in window 9:40270043-40270046
2012-10-07 17:01:01,091 - DEBUG - Taking top 8 variants by coverage in window 9:40274252-40274253
2012-10-07 17:01:01,573 - DEBUG - Taking top 8 variants by coverage in window 9:40278286-40278304
2012-10-07 17:01:02,249 - DEBUG - Taking top 8 variants by coverage in window 9:40284321-40284322
2012-10-07 17:01:04,338 - DEBUG - Taking top 8 variants by coverage in window 9:40308695-40308706
2012-10-07 17:01:04,683 - DEBUG - Taking top 8 variants by coverage in window 9:40311522-40311523
2012-10-07 17:01:04,746 - DEBUG - Taking top 8 variants by coverage in window 9:40311811-40311812
2012-10-07 17:01:05,124 - DEBUG - Taking top 8 variants by coverage in window 9:40316305-40316306
2012-10-07 17:01:05,583 - DEBUG - Taking top 8 variants by coverage in window 9:40321236-40321239
2012-10-07 17:01:05,613 - DEBUG - Taking top 8 variants by coverage in window 9:40321247-40321249
2012-10-07 17:01:07,095 - DEBUG - Taking top 8 variants by coverage in window 9:40340253-40340261
2012-10-07 17:01:07,338 - DEBUG - Taking top 8 variants by coverage in window 9:40343101-40343102
2012-10-07 17:01:07,349 - DEBUG - Taking top 8 variants by coverage in window 9:40343114-40343115
2012-10-07 17:01:07,360 - DEBUG - Taking top 8 variants by coverage in window 9:40343117-40343118
2012-10-07 17:01:07,952 - DEBUG - Taking top 8 variants by coverage in window 9:40351222-40351223
2012-10-07 17:01:08,657 - DEBUG - Taking top 8 variants by coverage in window 9:40357652-40357653
2012-10-07 17:01:09,878 - DEBUG - Taking top 8 variants by coverage in window 9:40369584-40369587
2012-10-07 17:01:09,939 - DEBUG - Taking top 8 variants by coverage in window 9:40369620-40369622
2012-10-07 17:01:10,562 - DEBUG - Taking top 8 variants by coverage in window 9:40376208-40376209
2012-10-07 17:01:10,654 - DEBUG - Taking top 8 variants by coverage in window 9:40376270-40376272
2012-10-07 17:01:11,216 - DEBUG - Taking top 8 variants by coverage in window 9:40382507-40382514
2012-10-07 17:01:11,264 - DEBUG - Taking top 8 variants by coverage in window 9:40382594-40382595
2012-10-07 17:01:11,614 - DEBUG - Taking top 8 variants by coverage in window 9:40386324-40386325
2012-10-07 17:01:11,749 - DEBUG - Taking top 8 variants by coverage in window 9:40387609-40387619
2012-10-07 17:01:11,971 - DEBUG - Taking top 8 variants by coverage in window 9:40388307-40388308
2012-10-07 17:01:12,139 - DEBUG - Taking top 8 variants by coverage in window 9:40388320-40388321
2012-10-07 17:01:12,591 - DEBUG - Taking top 8 variants by coverage in window 9:40388369-40388370
2012-10-07 17:01:12,639 - DEBUG - Taking top 8 variants by coverage in window 9:40388370-40388375
2012-10-07 17:01:12,804 - DEBUG - Taking top 8 variants by coverage in window 9:40388383-40388386
2012-10-07 17:01:13,423 - DEBUG - Taking top 8 variants by coverage in window 9:40388424-40388426
2012-10-07 17:01:13,736 - DEBUG - Taking top 8 variants by coverage in window 9:40388438-40388440
2012-10-07 17:01:13,844 - DEBUG - Taking top 8 variants by coverage in window 9:40388454-40388457
2012-10-07 17:01:14,057 - DEBUG - Taking top 8 variants by coverage in window 9:40388514-40388515
2012-10-07 17:01:14,546 - DEBUG - Taking top 8 variants by coverage in window 9:40391051-40391052
2012-10-07 17:01:15,011 - DEBUG - Taking top 8 variants by coverage in window 9:40396432-40396435
2012-10-07 17:01:15,219 - DEBUG - Taking top 8 variants by coverage in window 9:40397863-40397864
2012-10-07 17:01:16,606 - DEBUG - Taking top 8 variants by coverage in window 9:40416735-40416736
2012-10-07 17:01:16,725 - DEBUG - Taking top 8 variants by coverage in window 9:40417467-40417468
2012-10-07 17:01:17,114 - DEBUG - Taking top 8 variants by coverage in window 9:40420316-40420320
2012-10-07 17:01:17,866 - DEBUG - Taking top 8 variants by coverage in window 9:40428483-40428484
2012-10-07 17:01:18,304 - DEBUG - Taking top 8 variants by coverage in window 9:40431895-40431897
2012-10-07 17:01:19,262 - DEBUG - Taking top 8 variants by coverage in window 9:40439345-40439346
2012-10-07 17:01:19,546 - DEBUG - Taking top 8 variants by coverage in window 9:40443493-40443495
2012-10-07 17:01:20,115 - DEBUG - Taking top 8 variants by coverage in window 9:40451479-40451481
2012-10-07 17:01:20,294 - DEBUG - Taking top 8 variants by coverage in window 9:40453269-40453273
2012-10-07 17:01:20,306 - DEBUG - Taking top 8 variants by coverage in window 9:40453275-40453276
2012-10-07 17:01:20,727 - DEBUG - Taking top 8 variants by coverage in window 9:40456162-40456163
2012-10-07 17:01:20,822 - DEBUG - Taking top 8 variants by coverage in window 9:40456756-40456758
2012-10-07 17:01:20,841 - DEBUG - Taking top 8 variants by coverage in window 9:40456759-40456760
2012-10-07 17:01:21,560 - DEBUG - Taking top 8 variants by coverage in window 9:40466737-40466764
2012-10-07 17:01:22,693 - DEBUG - Taking top 8 variants by coverage in window 9:40476432-40476433
2012-10-07 17:01:22,930 - DEBUG - Taking top 8 variants by coverage in window 9:40476941-40476942
2012-10-07 17:01:23,945 - DEBUG - Taking top 8 variants by coverage in window 9:40488723-40488724
2012-10-07 17:01:24,630 - DEBUG - Taking top 8 variants by coverage in window 9:40497974-40497975
2012-10-07 17:01:24,920 - DEBUG - Taking top 8 variants by coverage in window 9:40502749-40502750
2012-10-07 17:01:25,208 - DEBUG - Taking top 8 variants by coverage in window 9:40509027-40509028
2012-10-07 17:01:25,267 - DEBUG - Taking top 8 variants by coverage in window 9:40509528-40509529
2012-10-07 17:01:25,759 - DEBUG - Taking top 8 variants by coverage in window 9:40514237-40514238
2012-10-07 17:01:25,899 - DEBUG - Taking top 8 variants by coverage in window 9:40517739-40517740
2012-10-07 17:01:26,492 - DEBUG - Taking top 8 variants by coverage in window 9:40527488-40527504
2012-10-07 17:01:27,095 - DEBUG - Taking top 8 variants by coverage in window 9:40528967-40528968
2012-10-07 17:01:27,200 - DEBUG - Taking top 8 variants by coverage in window 9:40529862-40529868
2012-10-07 17:01:27,356 - DEBUG - Taking top 8 variants by coverage in window 9:40532847-40532855
2012-10-07 17:01:27,595 - DEBUG - Taking top 8 variants by coverage in window 9:40536616-40536619
2012-10-07 17:01:29,173 - DEBUG - Taking top 8 variants by coverage in window 9:40553915-40553916
2012-10-07 17:01:29,193 - DEBUG - Taking top 8 variants by coverage in window 9:40553946-40553947
2012-10-07 17:01:29,516 - DEBUG - Taking top 8 variants by coverage in window 9:40557542-40557543
2012-10-07 17:01:29,627 - DEBUG - Taking top 8 variants by coverage in window 9:40559199-40559205
2012-10-07 17:01:29,873 - DEBUG - Taking top 8 variants by coverage in window 9:40563599-40563600
2012-10-07 17:01:30,353 - DEBUG - Taking top 8 variants by coverage in window 9:40568134-40568135
2012-10-07 17:01:30,415 - DEBUG - Taking top 8 variants by coverage in window 9:40568164-40568165
2012-10-07 17:01:30,588 - DEBUG - Taking top 8 variants by coverage in window 9:40569872-40569873
2012-10-07 17:01:30,628 - DEBUG - Taking top 8 variants by coverage in window 9:40569881-40569882
2012-10-07 17:01:30,859 - DEBUG - Taking top 8 variants by coverage in window 9:40572794-40572795
2012-10-07 17:01:30,969 - DEBUG - Taking top 8 variants by coverage in window 9:40573266-40573268
2012-10-07 17:01:31,624 - DEBUG - Taking top 8 variants by coverage in window 9:40578664-40578665
2012-10-07 17:01:31,655 - DEBUG - Taking top 8 variants by coverage in window 9:40578689-40578690
2012-10-07 17:01:32,237 - DEBUG - Taking top 8 variants by coverage in window 9:40581151-40581159
2012-10-07 17:01:32,781 - DEBUG - Taking top 8 variants by coverage in window 9:40585766-40585767
2012-10-07 17:01:33,272 - DEBUG - Taking top 8 variants by coverage in window 9:40589660-40589662
2012-10-07 17:01:34,125 - DEBUG - Taking top 8 variants by coverage in window 9:40599657-40599662
2012-10-07 17:01:34,276 - DEBUG - Taking top 8 variants by coverage in window 9:40601324-40601325
2012-10-07 17:01:34,361 - DEBUG - Taking top 8 variants by coverage in window 9:40602273-40602274
2012-10-07 17:01:34,539 - DEBUG - Taking top 8 variants by coverage in window 9:40604284-40604287
2012-10-07 17:01:34,564 - DEBUG - Taking top 8 variants by coverage in window 9:40604288-40604290
2012-10-07 17:01:34,649 - DEBUG - Taking top 8 variants by coverage in window 9:40604402-40604403
2012-10-07 17:01:34,684 - DEBUG - Taking top 8 variants by coverage in window 9:40604755-40604756
2012-10-07 17:01:35,435 - DEBUG - Taking top 8 variants by coverage in window 9:40613506-40613507
2012-10-07 17:01:35,531 - DEBUG - Taking top 8 variants by coverage in window 9:40613729-40613730
2012-10-07 17:01:35,547 - DEBUG - Taking top 8 variants by coverage in window 9:40613755-40613763
2012-10-07 17:01:36,478 - DEBUG - Taking top 8 variants by coverage in window 9:40623633-40623640
2012-10-07 17:01:36,619 - DEBUG - Taking top 8 variants by coverage in window 9:40624685-40624686
2012-10-07 17:01:36,643 - DEBUG - Taking top 8 variants by coverage in window 9:40625072-40625073
2012-10-07 17:01:37,309 - DEBUG - Taking top 8 variants by coverage in window 9:40631975-40631976
2012-10-07 17:01:37,662 - DEBUG - Taking top 8 variants by coverage in window 9:40634660-40634664
2012-10-07 17:01:38,424 - DEBUG - Taking top 8 variants by coverage in window 9:40640343-40640344
2012-10-07 17:01:38,449 - DEBUG - Taking top 8 variants by coverage in window 9:40640349-40640352
2012-10-07 17:01:39,093 - DEBUG - Taking top 8 variants by coverage in window 9:40645648-40645649
2012-10-07 17:01:39,565 - DEBUG - Taking top 8 variants by coverage in window 9:40650035-40650036
2012-10-07 17:01:40,538 - DEBUG - Taking top 8 variants by coverage in window 9:40659525-40659526
2012-10-07 17:01:41,916 - DEBUG - Taking top 8 variants by coverage in window 9:40690266-40690267
2012-10-07 17:01:42,090 - DEBUG - Taking top 8 variants by coverage in window 9:40691815-40691820
2012-10-07 17:01:42,892 - DEBUG - Taking top 8 variants by coverage in window 9:40701973-40701974
2012-10-07 17:01:42,933 - DEBUG - Taking top 8 variants by coverage in window 9:40702013-40702014
2012-10-07 17:01:43,355 - DEBUG - Taking top 8 variants by coverage in window 9:40706665-40706667
2012-10-07 17:01:44,075 - DEBUG - Taking top 8 variants by coverage in window 9:40724576-40724577
2012-10-07 17:01:44,215 - DEBUG - Taking top 8 variants by coverage in window 9:40726817-40726820
2012-10-07 17:01:44,604 - DEBUG - Taking top 8 variants by coverage in window 9:40731066-40731067
2012-10-07 17:01:45,243 - DEBUG - Taking top 8 variants by coverage in window 9:40737368-40737369
2012-10-07 17:01:46,230 - DEBUG - Taking top 8 variants by coverage in window 9:40750890-40750895
2012-10-07 17:01:46,285 - DEBUG - Taking top 8 variants by coverage in window 9:40750897-40750898
2012-10-07 17:01:46,677 - DEBUG - Taking top 8 variants by coverage in window 9:40761286-40761301
2012-10-07 17:01:47,445 - DEBUG - Taking top 8 variants by coverage in window 9:40762810-40762811
2012-10-07 17:01:47,497 - DEBUG - Taking top 8 variants by coverage in window 9:40762839-40762840
2012-10-07 17:01:48,061 - DEBUG - Taking top 8 variants by coverage in window 9:40773246-40773247
2012-10-07 17:01:48,154 - DEBUG - Taking top 8 variants by coverage in window 9:40774663-40774681
2012-10-07 17:01:48,270 - DEBUG - Taking top 8 variants by coverage in window 9:40774928-40774929
2012-10-07 17:01:48,882 - DEBUG - Taking top 8 variants by coverage in window 9:40783132-40783133
2012-10-07 17:01:49,012 - DEBUG - Taking top 8 variants by coverage in window 9:40784533-40784534
2012-10-07 17:01:49,228 - DEBUG - Taking top 8 variants by coverage in window 9:40787181-40787182
2012-10-07 17:01:49,474 - DEBUG - Taking top 8 variants by coverage in window 9:40789804-40789806
2012-10-07 17:01:49,940 - DEBUG - Taking top 8 variants by coverage in window 9:40795681-40795682
2012-10-07 17:01:50,087 - DEBUG - Taking top 8 variants by coverage in window 9:40795711-40795712
2012-10-07 17:01:50,863 - DEBUG - Taking top 8 variants by coverage in window 9:40806136-40806137
2012-10-07 17:01:51,026 - DEBUG - Taking top 8 variants by coverage in window 9:40807088-40807090
2012-10-07 17:01:51,061 - DEBUG - Taking top 8 variants by coverage in window 9:40807143-40807144
2012-10-07 17:01:51,102 - DEBUG - Taking top 8 variants by coverage in window 9:40807330-40807331
2012-10-07 17:01:51,891 - DEBUG - Taking top 8 variants by coverage in window 9:40814095-40814096
2012-10-07 17:01:52,357 - DEBUG - Taking top 8 variants by coverage in window 9:40820994-40821003
2012-10-07 17:01:53,081 - DEBUG - Taking top 8 variants by coverage in window 9:40829415-40829434
2012-10-07 17:01:54,909 - DEBUG - Taking top 8 variants by coverage in window 9:40846193-40846195
2012-10-07 17:01:54,959 - DEBUG - Taking top 8 variants by coverage in window 9:40846199-40846200
2012-10-07 17:01:56,154 - DEBUG - Taking top 8 variants by coverage in window 9:40857343-40857344
2012-10-07 17:01:56,960 - DEBUG - Taking top 8 variants by coverage in window 9:40863131-40863132
2012-10-07 17:01:57,212 - DEBUG - Taking top 8 variants by coverage in window 9:40864644-40864645
2012-10-07 17:01:57,230 - DEBUG - Taking top 8 variants by coverage in window 9:40864648-40864649
2012-10-07 17:01:57,811 - DEBUG - Taking top 8 variants by coverage in window 9:40868468-40868469
2012-10-07 17:01:58,971 - DEBUG - Taking top 8 variants by coverage in window 9:40879402-40879403
2012-10-07 17:01:59,217 - DEBUG - Taking top 8 variants by coverage in window 9:40881063-40881064
2012-10-07 17:01:59,806 - DEBUG - Taking top 8 variants by coverage in window 9:40887348-40887356
2012-10-07 17:01:59,874 - DEBUG - Taking top 8 variants by coverage in window 9:40887361-40887362
2012-10-07 17:02:00,146 - DEBUG - Taking top 8 variants by coverage in window 9:40889934-40889935
2012-10-07 17:02:00,175 - DEBUG - Taking top 8 variants by coverage in window 9:40889938-40889939
2012-10-07 17:02:00,382 - DEBUG - Taking top 8 variants by coverage in window 9:40890058-40890059
2012-10-07 17:02:00,721 - DEBUG - Taking top 8 variants by coverage in window 9:40893511-40893528
2012-10-07 17:02:01,222 - DEBUG - Taking top 8 variants by coverage in window 9:40897402-40897403
2012-10-07 17:02:01,701 - DEBUG - Taking top 8 variants by coverage in window 9:40901764-40901765
2012-10-07 17:02:01,722 - DEBUG - Taking top 8 variants by coverage in window 9:40901782-40901783
2012-10-07 17:02:02,073 - DEBUG - Taking top 8 variants by coverage in window 9:40903909-40903910
2012-10-07 17:02:02,341 - DEBUG - Taking top 8 variants by coverage in window 9:40905858-40905859
2012-10-07 17:02:02,470 - DEBUG - Taking top 8 variants by coverage in window 9:40907682-40907683
2012-10-07 17:02:02,585 - DEBUG - Taking top 8 variants by coverage in window 9:40908660-40908661
2012-10-07 17:02:03,529 - DEBUG - Taking top 8 variants by coverage in window 9:40918826-40918828
2012-10-07 17:02:03,602 - DEBUG - Taking top 8 variants by coverage in window 9:40918884-40918885
2012-10-07 17:02:04,795 - DEBUG - Taking top 8 variants by coverage in window 9:40929599-40929600
2012-10-07 17:02:04,834 - DEBUG - Taking top 8 variants by coverage in window 9:40929643-40929644
2012-10-07 17:02:05,289 - DEBUG - Taking top 8 variants by coverage in window 9:40935024-40935025
2012-10-07 17:02:05,406 - DEBUG - Taking top 8 variants by coverage in window 9:40935783-40935784
2012-10-07 17:02:06,423 - DEBUG - Taking top 8 variants by coverage in window 9:40948375-40948376
2012-10-07 17:02:06,527 - DEBUG - Taking top 8 variants by coverage in window 9:40949399-40949400
2012-10-07 17:02:06,934 - DEBUG - Taking top 8 variants by coverage in window 9:40953782-40953792
2012-10-07 17:02:08,363 - DEBUG - Taking top 8 variants by coverage in window 9:40962649-40962650
2012-10-07 17:02:08,679 - DEBUG - Taking top 8 variants by coverage in window 9:40967807-40967808
2012-10-07 17:02:08,728 - DEBUG - Taking top 8 variants by coverage in window 9:40968334-40968335
2012-10-07 17:02:09,752 - DEBUG - Taking top 8 variants by coverage in window 9:40975725-40975727
2012-10-07 17:02:10,153 - DEBUG - Taking top 8 variants by coverage in window 9:40980800-40980801
2012-10-07 17:02:10,392 - DEBUG - Taking top 8 variants by coverage in window 9:40983871-40983880
2012-10-07 17:02:10,928 - DEBUG - Taking top 8 variants by coverage in window 9:40987064-40987066
2012-10-07 17:02:11,050 - DEBUG - Taking top 8 variants by coverage in window 9:40987158-40987159
2012-10-07 17:02:11,403 - DEBUG - Taking top 8 variants by coverage in window 9:40989350-40989354
2012-10-07 17:02:11,933 - DEBUG - Taking top 8 variants by coverage in window 9:40997203-40997204
2012-10-07 17:02:11,985 - DEBUG - Taking top 8 variants by coverage in window 9:40997859-40997860
2012-10-07 17:02:13,120 - DEBUG - Read 101107 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 17:02:13,373 - DEBUG - Read 109901 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 17:02:13,643 - DEBUG - Read 126811 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 17:02:13,948 - DEBUG - Read 128161 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 17:02:14,234 - DEBUG - Read 120763 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 17:02:14,489 - DEBUG - Read 115131 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 17:02:14,755 - DEBUG - Read 121353 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 17:02:15,019 - DEBUG - Read 111850 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 17:02:15,268 - DEBUG - Read 106723 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 17:02:15,516 - DEBUG - Read 105065 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 17:02:15,783 - DEBUG - Read 118048 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 17:02:16,024 - DEBUG - Read 107082 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 17:02:16,275 - DEBUG - Read 109102 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 17:02:16,526 - DEBUG - Read 118101 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 17:02:16,804 - DEBUG - Read 128513 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 17:02:17,039 - DEBUG - Read 100092 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 17:02:17,302 - DEBUG - Read 123816 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 17:02:17,567 - DEBUG - Read 117494 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 17:02:17,797 - DEBUG - Read 103742 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 17:02:18,118 - DEBUG - Read 101110 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 17:02:18,228 - DEBUG - Detected 22573 variants in 101107 reads
2012-10-07 17:02:18,393 - DEBUG - Detected 33526 variants in 109901 reads
2012-10-07 17:02:18,620 - DEBUG - Detected 43560 variants in 126811 reads
2012-10-07 17:02:18,887 - DEBUG - Detected 51140 variants in 128161 reads
2012-10-07 17:02:19,179 - DEBUG - Detected 58821 variants in 120763 reads
2012-10-07 17:02:19,498 - DEBUG - Detected 65140 variants in 115131 reads
2012-10-07 17:02:19,897 - DEBUG - Detected 78743 variants in 121353 reads
2012-10-07 17:02:20,312 - DEBUG - Detected 83797 variants in 111850 reads
2012-10-07 17:02:20,748 - DEBUG - Detected 90572 variants in 106723 reads
2012-10-07 17:02:21,212 - DEBUG - Detected 95866 variants in 105065 reads
2012-10-07 17:02:21,706 - DEBUG - Detected 100565 variants in 118048 reads
2012-10-07 17:02:22,259 - DEBUG - Detected 105946 variants in 107082 reads
2012-10-07 17:02:22,802 - DEBUG - Detected 110090 variants in 109102 reads
2012-10-07 17:02:23,372 - DEBUG - Detected 114463 variants in 118101 reads
2012-10-07 17:02:23,966 - DEBUG - Detected 122404 variants in 128513 reads
2012-10-07 17:02:24,564 - DEBUG - Detected 126730 variants in 100092 reads
2012-10-07 17:02:25,204 - DEBUG - Detected 130440 variants in 123816 reads
2012-10-07 17:02:25,894 - DEBUG - Detected 134689 variants in 117494 reads
2012-10-07 17:02:26,543 - DEBUG - Detected 138903 variants in 103742 reads
2012-10-07 17:02:27,216 - DEBUG - Detected 144827 variants in 101110 reads
2012-10-07 17:02:28,471 - DEBUG - Taking top 8 variants by coverage in window 9:41002461-41002463
2012-10-07 17:02:29,348 - DEBUG - Taking top 8 variants by coverage in window 9:41010133-41010135
2012-10-07 17:02:29,364 - DEBUG - Taking top 8 variants by coverage in window 9:41010144-41010145
2012-10-07 17:02:29,958 - DEBUG - Taking top 8 variants by coverage in window 9:41016420-41016431
2012-10-07 17:02:30,177 - DEBUG - Taking top 8 variants by coverage in window 9:41017495-41017496
2012-10-07 17:02:30,189 - DEBUG - Taking top 8 variants by coverage in window 9:41017497-41017499
2012-10-07 17:02:30,417 - DEBUG - Taking top 8 variants by coverage in window 9:41019674-41019678
2012-10-07 17:02:30,708 - DEBUG - Taking top 8 variants by coverage in window 9:41022020-41022021
2012-10-07 17:02:31,788 - DEBUG - Taking top 8 variants by coverage in window 9:41033484-41033486
2012-10-07 17:02:32,366 - DEBUG - Taking top 8 variants by coverage in window 9:41038416-41038418
2012-10-07 17:02:32,895 - DEBUG - Taking top 8 variants by coverage in window 9:41043090-41043097
2012-10-07 17:02:32,907 - DEBUG - Taking top 8 variants by coverage in window 9:41043098-41043100
2012-10-07 17:02:33,512 - DEBUG - Taking top 8 variants by coverage in window 9:41051604-41051620
2012-10-07 17:02:33,775 - DEBUG - Taking top 8 variants by coverage in window 9:41055853-41055854
2012-10-07 17:02:34,202 - DEBUG - Taking top 8 variants by coverage in window 9:41057933-41057934
2012-10-07 17:02:34,562 - DEBUG - Taking top 8 variants by coverage in window 9:41062131-41062138
2012-10-07 17:02:34,593 - DEBUG - Taking top 8 variants by coverage in window 9:41062834-41062839
2012-10-07 17:02:35,370 - DEBUG - Taking top 8 variants by coverage in window 9:41073609-41073610
2012-10-07 17:02:35,383 - DEBUG - Taking top 8 variants by coverage in window 9:41073621-41073622
2012-10-07 17:02:35,455 - DEBUG - Taking top 8 variants by coverage in window 9:41074514-41074515
2012-10-07 17:02:35,545 - DEBUG - Taking top 8 variants by coverage in window 9:41074599-41074600
2012-10-07 17:02:35,981 - DEBUG - Taking top 8 variants by coverage in window 9:41079889-41079899
2012-10-07 17:02:36,339 - DEBUG - Taking top 8 variants by coverage in window 9:41083000-41083001
2012-10-07 17:02:36,720 - DEBUG - Taking top 8 variants by coverage in window 9:41086498-41086499
2012-10-07 17:02:36,950 - DEBUG - Taking top 8 variants by coverage in window 9:41090057-41090058
2012-10-07 17:02:37,416 - DEBUG - Taking top 8 variants by coverage in window 9:41090792-41090793
2012-10-07 17:02:37,874 - DEBUG - Taking top 8 variants by coverage in window 9:41096783-41096785
2012-10-07 17:02:38,062 - DEBUG - Taking top 8 variants by coverage in window 9:41098279-41098280
2012-10-07 17:02:38,513 - DEBUG - Taking top 8 variants by coverage in window 9:41101349-41101350
2012-10-07 17:02:39,107 - DEBUG - Taking top 8 variants by coverage in window 9:41105668-41105669
2012-10-07 17:02:39,282 - DEBUG - Taking top 8 variants by coverage in window 9:41107618-41107619
2012-10-07 17:02:40,078 - DEBUG - Taking top 8 variants by coverage in window 9:41117030-41117031
2012-10-07 17:02:40,106 - DEBUG - Taking top 8 variants by coverage in window 9:41117224-41117225
2012-10-07 17:02:40,646 - DEBUG - Taking top 8 variants by coverage in window 9:41123331-41123334
2012-10-07 17:02:41,793 - DEBUG - Taking top 8 variants by coverage in window 9:41138285-41138286
2012-10-07 17:02:42,498 - DEBUG - Taking top 8 variants by coverage in window 9:41144466-41144481
2012-10-07 17:02:42,540 - DEBUG - Taking top 8 variants by coverage in window 9:41144493-41144494
2012-10-07 17:02:42,563 - DEBUG - Taking top 8 variants by coverage in window 9:41144495-41144496
2012-10-07 17:02:44,162 - DEBUG - Taking top 8 variants by coverage in window 9:41168877-41168878
2012-10-07 17:02:44,430 - DEBUG - Taking top 8 variants by coverage in window 9:41171867-41171868
2012-10-07 17:02:45,263 - DEBUG - Taking top 8 variants by coverage in window 9:41187387-41187388
2012-10-07 17:02:45,283 - DEBUG - Taking top 8 variants by coverage in window 9:41187398-41187399
2012-10-07 17:02:46,521 - DEBUG - Taking top 8 variants by coverage in window 9:41200459-41200460
2012-10-07 17:02:46,851 - DEBUG - Taking top 8 variants by coverage in window 9:41205115-41205116
2012-10-07 17:02:47,156 - DEBUG - Taking top 8 variants by coverage in window 9:41208033-41208034
2012-10-07 17:02:47,262 - DEBUG - Taking top 8 variants by coverage in window 9:41208568-41208569
2012-10-07 17:02:50,221 - DEBUG - Taking top 8 variants by coverage in window 9:41242446-41242447
2012-10-07 17:02:50,491 - DEBUG - Taking top 8 variants by coverage in window 9:41246038-41246039
2012-10-07 17:02:51,238 - DEBUG - Taking top 8 variants by coverage in window 9:41257890-41257891
2012-10-07 17:02:51,499 - DEBUG - Taking top 8 variants by coverage in window 9:41261340-41261344
2012-10-07 17:02:51,843 - DEBUG - Taking top 8 variants by coverage in window 9:41266550-41266551
2012-10-07 17:02:51,857 - DEBUG - Taking top 8 variants by coverage in window 9:41266552-41266553
2012-10-07 17:02:52,279 - DEBUG - Taking top 8 variants by coverage in window 9:41271597-41271598
2012-10-07 17:02:52,587 - DEBUG - Taking top 8 variants by coverage in window 9:41275443-41275451
2012-10-07 17:02:53,089 - DEBUG - Taking top 8 variants by coverage in window 9:41285017-41285018
2012-10-07 17:02:53,778 - DEBUG - Taking top 8 variants by coverage in window 9:41298671-41298673
2012-10-07 17:02:53,878 - DEBUG - Taking top 8 variants by coverage in window 9:41299000-41299004
2012-10-07 17:02:53,938 - DEBUG - Taking top 8 variants by coverage in window 9:41299005-41299006
2012-10-07 17:02:54,004 - DEBUG - Taking top 8 variants by coverage in window 9:41299106-41299121
2012-10-07 17:02:54,485 - DEBUG - Taking top 8 variants by coverage in window 9:41305208-41305211
2012-10-07 17:02:54,532 - DEBUG - Taking top 8 variants by coverage in window 9:41305223-41305226
2012-10-07 17:02:54,905 - DEBUG - Taking top 8 variants by coverage in window 9:41308991-41308992
2012-10-07 17:02:54,917 - DEBUG - Taking top 8 variants by coverage in window 9:41308993-41308994
2012-10-07 17:02:55,005 - DEBUG - Taking top 8 variants by coverage in window 9:41309674-41309675
2012-10-07 17:02:56,560 - DEBUG - Taking top 8 variants by coverage in window 9:41332489-41332490
2012-10-07 17:02:56,575 - DEBUG - Taking top 8 variants by coverage in window 9:41332521-41332527
2012-10-07 17:02:57,031 - DEBUG - Taking top 8 variants by coverage in window 9:41341872-41341873
2012-10-07 17:02:57,567 - DEBUG - Taking top 8 variants by coverage in window 9:41351165-41351172
2012-10-07 17:02:57,583 - DEBUG - Taking top 8 variants by coverage in window 9:41351176-41351177
2012-10-07 17:02:57,744 - DEBUG - Taking top 8 variants by coverage in window 9:41352658-41352659
2012-10-07 17:02:58,175 - DEBUG - Taking top 8 variants by coverage in window 9:41360208-41360216
2012-10-07 17:02:58,476 - DEBUG - Taking top 8 variants by coverage in window 9:41360224-41360230
2012-10-07 17:02:58,780 - DEBUG - Taking top 8 variants by coverage in window 9:41360344-41360352
2012-10-07 17:02:59,132 - DEBUG - Taking top 8 variants by coverage in window 9:41360412-41360420
2012-10-07 17:03:00,118 - DEBUG - Taking top 8 variants by coverage in window 9:41360480-41360484
2012-10-07 17:03:00,195 - DEBUG - Taking top 8 variants by coverage in window 9:41360506-41360508
2012-10-07 17:03:00,828 - DEBUG - Taking top 8 variants by coverage in window 9:41370508-41370509
2012-10-07 17:03:01,531 - DEBUG - Taking top 8 variants by coverage in window 9:41383142-41383143
2012-10-07 17:03:01,678 - DEBUG - Taking top 8 variants by coverage in window 9:41384727-41384728
2012-10-07 17:03:01,702 - DEBUG - Taking top 8 variants by coverage in window 9:41384747-41384748
2012-10-07 17:03:01,976 - DEBUG - Taking top 8 variants by coverage in window 9:41390194-41390197
2012-10-07 17:03:02,145 - DEBUG - Taking top 8 variants by coverage in window 9:41393961-41393962
2012-10-07 17:03:02,533 - DEBUG - Taking top 8 variants by coverage in window 9:41406779-41406780
2012-10-07 17:03:02,901 - DEBUG - Taking top 8 variants by coverage in window 9:41413025-41413051
2012-10-07 17:03:03,469 - DEBUG - Taking top 8 variants by coverage in window 9:41423071-41423072
2012-10-07 17:03:03,665 - DEBUG - Taking top 8 variants by coverage in window 9:41426112-41426126
2012-10-07 17:03:03,811 - DEBUG - Taking top 8 variants by coverage in window 9:41428546-41428547
2012-10-07 17:03:03,895 - DEBUG - Taking top 8 variants by coverage in window 9:41428964-41428965
2012-10-07 17:03:03,942 - DEBUG - Taking top 8 variants by coverage in window 9:41428991-41428995
2012-10-07 17:03:04,784 - DEBUG - Taking top 8 variants by coverage in window 9:41436702-41436703
2012-10-07 17:03:04,818 - DEBUG - Taking top 8 variants by coverage in window 9:41436727-41436728
2012-10-07 17:03:05,527 - DEBUG - Taking top 8 variants by coverage in window 9:41445726-41445727
2012-10-07 17:03:06,425 - DEBUG - Taking top 8 variants by coverage in window 9:41460659-41460660
2012-10-07 17:03:06,588 - DEBUG - Taking top 8 variants by coverage in window 9:41460719-41460720
2012-10-07 17:03:06,958 - DEBUG - Taking top 8 variants by coverage in window 9:41466113-41466114
2012-10-07 17:03:07,449 - DEBUG - Taking top 8 variants by coverage in window 9:41470528-41470530
2012-10-07 17:03:07,477 - DEBUG - Taking top 8 variants by coverage in window 9:41470568-41470584
2012-10-07 17:03:08,452 - DEBUG - Taking top 8 variants by coverage in window 9:41489257-41489258
2012-10-07 17:03:09,254 - DEBUG - Taking top 8 variants by coverage in window 9:41505727-41505728
2012-10-07 17:03:09,602 - DEBUG - Taking top 8 variants by coverage in window 9:41514860-41514861
2012-10-07 17:03:09,853 - DEBUG - Taking top 8 variants by coverage in window 9:41517085-41517086
2012-10-07 17:03:09,864 - DEBUG - Taking top 8 variants by coverage in window 9:41517105-41517106
2012-10-07 17:03:09,971 - DEBUG - Taking top 8 variants by coverage in window 9:41518332-41518333
2012-10-07 17:03:10,250 - DEBUG - Taking top 8 variants by coverage in window 9:41520606-41520610
2012-10-07 17:03:10,504 - DEBUG - Taking top 8 variants by coverage in window 9:41520681-41520682
2012-10-07 17:03:10,521 - DEBUG - Taking top 8 variants by coverage in window 9:41520683-41520685
2012-10-07 17:03:10,782 - DEBUG - Taking top 8 variants by coverage in window 9:41520701-41520702
2012-10-07 17:03:11,359 - DEBUG - Taking top 8 variants by coverage in window 9:41528494-41528495
2012-10-07 17:03:12,112 - DEBUG - Taking top 8 variants by coverage in window 9:41538285-41538287
2012-10-07 17:03:12,857 - DEBUG - Taking top 8 variants by coverage in window 9:41553146-41553148
2012-10-07 17:03:13,127 - DEBUG - Taking top 8 variants by coverage in window 9:41562267-41562282
2012-10-07 17:03:13,343 - DEBUG - Taking top 8 variants by coverage in window 9:41565780-41565781
2012-10-07 17:03:13,825 - DEBUG - Taking top 8 variants by coverage in window 9:41570138-41570139
2012-10-07 17:03:14,955 - DEBUG - Taking top 8 variants by coverage in window 9:41581997-41581998
2012-10-07 17:03:15,398 - DEBUG - Taking top 8 variants by coverage in window 9:41587656-41587659
2012-10-07 17:03:15,440 - DEBUG - Taking top 8 variants by coverage in window 9:41588178-41588182
2012-10-07 17:03:17,265 - DEBUG - Taking top 8 variants by coverage in window 9:41610736-41610744
2012-10-07 17:03:17,739 - DEBUG - Taking top 8 variants by coverage in window 9:41614814-41614815
2012-10-07 17:03:17,764 - DEBUG - Taking top 8 variants by coverage in window 9:41614844-41614845
2012-10-07 17:03:17,853 - DEBUG - Taking top 8 variants by coverage in window 9:41616104-41616105
2012-10-07 17:03:18,423 - DEBUG - Taking top 8 variants by coverage in window 9:41621044-41621045
2012-10-07 17:03:18,882 - DEBUG - Taking top 8 variants by coverage in window 9:41624947-41624961
2012-10-07 17:03:19,788 - DEBUG - Taking top 8 variants by coverage in window 9:41633274-41633275
2012-10-07 17:03:19,944 - DEBUG - Taking top 8 variants by coverage in window 9:41634713-41634714
2012-10-07 17:03:20,249 - DEBUG - Taking top 8 variants by coverage in window 9:41635359-41635361
2012-10-07 17:03:20,314 - DEBUG - Taking top 8 variants by coverage in window 9:41635408-41635409
2012-10-07 17:03:20,866 - DEBUG - Taking top 8 variants by coverage in window 9:41642587-41642591
2012-10-07 17:03:21,501 - DEBUG - Taking top 8 variants by coverage in window 9:41648187-41648188
2012-10-07 17:03:22,403 - DEBUG - Taking top 8 variants by coverage in window 9:41658962-41658963
2012-10-07 17:03:22,753 - DEBUG - Taking top 8 variants by coverage in window 9:41662258-41662272
2012-10-07 17:03:23,054 - DEBUG - Taking top 8 variants by coverage in window 9:41664199-41664200
2012-10-07 17:03:24,015 - DEBUG - Taking top 8 variants by coverage in window 9:41676995-41676996
2012-10-07 17:03:24,059 - DEBUG - Taking top 8 variants by coverage in window 9:41677735-41677738
2012-10-07 17:03:24,111 - DEBUG - Taking top 8 variants by coverage in window 9:41677809-41677822
2012-10-07 17:03:24,179 - DEBUG - Taking top 8 variants by coverage in window 9:41678363-41678364
2012-10-07 17:03:25,151 - DEBUG - Taking top 8 variants by coverage in window 9:41691248-41691249
2012-10-07 17:03:25,965 - DEBUG - Taking top 8 variants by coverage in window 9:41701354-41701355
2012-10-07 17:03:25,984 - DEBUG - Taking top 8 variants by coverage in window 9:41701359-41701360
2012-10-07 17:03:26,257 - DEBUG - Taking top 8 variants by coverage in window 9:41704200-41704202
2012-10-07 17:03:26,412 - DEBUG - Taking top 8 variants by coverage in window 9:41705845-41705860
2012-10-07 17:03:26,427 - DEBUG - Taking top 8 variants by coverage in window 9:41705875-41705876
2012-10-07 17:03:26,571 - DEBUG - Taking top 8 variants by coverage in window 9:41709405-41709406
2012-10-07 17:03:26,749 - DEBUG - Taking top 8 variants by coverage in window 9:41711066-41711067
2012-10-07 17:03:26,817 - DEBUG - Taking top 8 variants by coverage in window 9:41711165-41711166
2012-10-07 17:03:26,838 - DEBUG - Taking top 8 variants by coverage in window 9:41711170-41711174
2012-10-07 17:03:27,583 - DEBUG - Taking top 8 variants by coverage in window 9:41712388-41712389
2012-10-07 17:03:27,611 - DEBUG - Taking top 8 variants by coverage in window 9:41713209-41713210
2012-10-07 17:03:28,207 - DEBUG - Taking top 8 variants by coverage in window 9:41726318-41726319
2012-10-07 17:03:28,366 - DEBUG - Taking top 8 variants by coverage in window 9:41728187-41728188
2012-10-07 17:03:28,372 - DEBUG - Taking top 8 variants by coverage in window 9:41728188-41728190
2012-10-07 17:03:28,503 - DEBUG - Taking top 8 variants by coverage in window 9:41729923-41729924
2012-10-07 17:03:29,484 - DEBUG - Taking top 8 variants by coverage in window 9:41733090-41733099
2012-10-07 17:03:30,346 - DEBUG - Taking top 8 variants by coverage in window 9:41740743-41740753
2012-10-07 17:03:30,370 - DEBUG - Taking top 8 variants by coverage in window 9:41740754-41740755
2012-10-07 17:03:31,545 - DEBUG - Taking top 8 variants by coverage in window 9:41756888-41756889
2012-10-07 17:03:31,650 - DEBUG - Taking top 8 variants by coverage in window 9:41757021-41757027
2012-10-07 17:03:32,201 - DEBUG - Taking top 8 variants by coverage in window 9:41762807-41762808
2012-10-07 17:03:32,441 - DEBUG - Taking top 8 variants by coverage in window 9:41764640-41764642
2012-10-07 17:03:33,085 - DEBUG - Taking top 8 variants by coverage in window 9:41771036-41771038
2012-10-07 17:03:34,056 - DEBUG - Taking top 8 variants by coverage in window 9:41783872-41783873
2012-10-07 17:03:35,242 - DEBUG - Taking top 8 variants by coverage in window 9:41796012-41796017
2012-10-07 17:03:37,469 - DEBUG - Taking top 8 variants by coverage in window 9:41804491-41804494
2012-10-07 17:03:37,480 - DEBUG - Taking top 8 variants by coverage in window 9:41804495-41804496
2012-10-07 17:03:37,732 - DEBUG - Taking top 8 variants by coverage in window 9:41805196-41805197
2012-10-07 17:03:37,859 - DEBUG - Taking top 8 variants by coverage in window 9:41805430-41805442
2012-10-07 17:03:38,371 - DEBUG - Taking top 8 variants by coverage in window 9:41806075-41806084
2012-10-07 17:03:39,094 - DEBUG - Taking top 8 variants by coverage in window 9:41809403-41809404
2012-10-07 17:03:39,406 - DEBUG - Taking top 8 variants by coverage in window 9:41811386-41811388
2012-10-07 17:03:39,449 - DEBUG - Taking top 8 variants by coverage in window 9:41811400-41811401
2012-10-07 17:03:39,664 - DEBUG - Taking top 8 variants by coverage in window 9:41812277-41812279
2012-10-07 17:03:39,719 - DEBUG - Taking top 8 variants by coverage in window 9:41812287-41812288
2012-10-07 17:03:39,761 - DEBUG - Taking top 8 variants by coverage in window 9:41812294-41812295
2012-10-07 17:03:40,322 - DEBUG - Taking top 8 variants by coverage in window 9:41815580-41815581
2012-10-07 17:03:41,538 - DEBUG - Taking top 8 variants by coverage in window 9:41824115-41824116
2012-10-07 17:03:41,757 - DEBUG - Taking top 8 variants by coverage in window 9:41825714-41825715
2012-10-07 17:03:42,534 - DEBUG - Taking top 8 variants by coverage in window 9:41832944-41832946
2012-10-07 17:03:42,596 - DEBUG - Taking top 8 variants by coverage in window 9:41833102-41833103
2012-10-07 17:03:42,731 - DEBUG - Taking top 8 variants by coverage in window 9:41834754-41834755
2012-10-07 17:03:42,945 - DEBUG - Taking top 8 variants by coverage in window 9:41836202-41836203
2012-10-07 17:03:43,041 - DEBUG - Taking top 8 variants by coverage in window 9:41836651-41836654
2012-10-07 17:03:43,094 - DEBUG - Taking top 8 variants by coverage in window 9:41836681-41836682
2012-10-07 17:03:43,214 - DEBUG - Taking top 8 variants by coverage in window 9:41837652-41837653
2012-10-07 17:03:44,092 - DEBUG - Taking top 8 variants by coverage in window 9:41848203-41848204
2012-10-07 17:03:44,494 - DEBUG - Taking top 8 variants by coverage in window 9:41852497-41852506
2012-10-07 17:03:44,829 - DEBUG - Taking top 8 variants by coverage in window 9:41856285-41856286
2012-10-07 17:03:45,296 - DEBUG - Taking top 8 variants by coverage in window 9:41861568-41861587
2012-10-07 17:03:45,310 - DEBUG - Taking top 8 variants by coverage in window 9:41861588-41861591
2012-10-07 17:03:45,386 - DEBUG - Taking top 8 variants by coverage in window 9:41861594-41861595
2012-10-07 17:03:45,403 - DEBUG - Taking top 8 variants by coverage in window 9:41861595-41861596
2012-10-07 17:03:46,046 - DEBUG - Taking top 8 variants by coverage in window 9:41868283-41868284
2012-10-07 17:03:46,625 - DEBUG - Taking top 8 variants by coverage in window 9:41876480-41876498
2012-10-07 17:03:46,859 - DEBUG - Taking top 8 variants by coverage in window 9:41878232-41878233
2012-10-07 17:03:47,099 - DEBUG - Taking top 8 variants by coverage in window 9:41880917-41880919
2012-10-07 17:03:47,241 - DEBUG - Taking top 8 variants by coverage in window 9:41882544-41882545
2012-10-07 17:03:47,268 - DEBUG - Taking top 8 variants by coverage in window 9:41882558-41882559
2012-10-07 17:03:47,378 - DEBUG - Taking top 8 variants by coverage in window 9:41884036-41884038
2012-10-07 17:03:47,622 - DEBUG - Taking top 8 variants by coverage in window 9:41885423-41885424
2012-10-07 17:03:48,383 - DEBUG - Taking top 8 variants by coverage in window 9:41895721-41895722
2012-10-07 17:03:49,186 - DEBUG - Taking top 8 variants by coverage in window 9:41900082-41900085
2012-10-07 17:03:49,484 - DEBUG - Taking top 8 variants by coverage in window 9:41900117-41900118
2012-10-07 17:03:50,304 - DEBUG - Taking top 8 variants by coverage in window 9:41900198-41900200
2012-10-07 17:03:50,903 - DEBUG - Taking top 8 variants by coverage in window 9:41900245-41900249
2012-10-07 17:03:51,150 - DEBUG - Taking top 8 variants by coverage in window 9:41900271-41900277
2012-10-07 17:03:51,954 - DEBUG - Taking top 8 variants by coverage in window 9:41900328-41900329
2012-10-07 17:03:52,650 - DEBUG - Taking top 8 variants by coverage in window 9:41907506-41907507
2012-10-07 17:03:53,323 - DEBUG - Taking top 8 variants by coverage in window 9:41914943-41914944
2012-10-07 17:03:53,385 - DEBUG - Taking top 8 variants by coverage in window 9:41915159-41915167
2012-10-07 17:03:55,193 - DEBUG - Taking top 8 variants by coverage in window 9:41935302-41935303
2012-10-07 17:03:55,495 - DEBUG - Taking top 8 variants by coverage in window 9:41937442-41937443
2012-10-07 17:03:55,654 - DEBUG - Taking top 8 variants by coverage in window 9:41940259-41940260
2012-10-07 17:03:55,915 - DEBUG - Taking top 8 variants by coverage in window 9:41942349-41942359
2012-10-07 17:03:56,171 - DEBUG - Taking top 8 variants by coverage in window 9:41944252-41944257
2012-10-07 17:03:56,246 - DEBUG - Taking top 8 variants by coverage in window 9:41944739-41944747
2012-10-07 17:03:56,299 - DEBUG - Taking top 8 variants by coverage in window 9:41944773-41944774
2012-10-07 17:03:56,476 - DEBUG - Taking top 8 variants by coverage in window 9:41946341-41946348
2012-10-07 17:03:56,992 - DEBUG - Taking top 8 variants by coverage in window 9:41950253-41950254
2012-10-07 17:03:58,212 - DEBUG - Taking top 8 variants by coverage in window 9:41963171-41963173
2012-10-07 17:03:59,258 - DEBUG - Taking top 8 variants by coverage in window 9:41978425-41978426
2012-10-07 17:04:00,323 - DEBUG - Taking top 8 variants by coverage in window 9:41995061-41995063
2012-10-07 17:04:00,395 - DEBUG - Taking top 8 variants by coverage in window 9:41995445-41995446
2012-10-07 17:04:02,008 - DEBUG - Read 108447 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 17:04:02,294 - DEBUG - Read 119342 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 17:04:02,594 - DEBUG - Read 135368 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 17:04:02,936 - DEBUG - Read 138182 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 17:04:03,258 - DEBUG - Read 128072 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 17:04:03,547 - DEBUG - Read 123850 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 17:04:03,857 - DEBUG - Read 130249 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 17:04:04,163 - DEBUG - Read 120111 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 17:04:04,448 - DEBUG - Read 114197 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 17:04:04,732 - DEBUG - Read 111965 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 17:04:05,079 - DEBUG - Read 127059 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 17:04:05,354 - DEBUG - Read 114485 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 17:04:05,649 - DEBUG - Read 118507 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 17:04:05,943 - DEBUG - Read 127218 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 17:04:06,265 - DEBUG - Read 137316 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 17:04:06,550 - DEBUG - Read 107599 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 17:04:06,854 - DEBUG - Read 131470 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 17:04:07,163 - DEBUG - Read 124505 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 17:04:07,438 - DEBUG - Read 113539 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 17:04:07,722 - DEBUG - Read 108397 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 17:04:07,841 - DEBUG - Detected 21158 variants in 108447 reads
2012-10-07 17:04:08,030 - DEBUG - Detected 31095 variants in 119342 reads
2012-10-07 17:04:08,285 - DEBUG - Detected 41502 variants in 135368 reads
2012-10-07 17:04:08,585 - DEBUG - Detected 47579 variants in 138182 reads
2012-10-07 17:04:08,924 - DEBUG - Detected 54476 variants in 128072 reads
2012-10-07 17:04:09,285 - DEBUG - Detected 60108 variants in 123850 reads
2012-10-07 17:04:09,753 - DEBUG - Detected 74278 variants in 130249 reads
2012-10-07 17:04:10,230 - DEBUG - Detected 80892 variants in 120111 reads
2012-10-07 17:04:10,745 - DEBUG - Detected 86913 variants in 114197 reads
2012-10-07 17:04:11,285 - DEBUG - Detected 91562 variants in 111965 reads
2012-10-07 17:04:11,863 - DEBUG - Detected 97119 variants in 127059 reads
2012-10-07 17:04:12,429 - DEBUG - Detected 101484 variants in 114485 reads
2012-10-07 17:04:13,069 - DEBUG - Detected 105978 variants in 118507 reads
2012-10-07 17:04:13,689 - DEBUG - Detected 110474 variants in 127218 reads
2012-10-07 17:04:14,349 - DEBUG - Detected 119079 variants in 137316 reads
2012-10-07 17:04:15,020 - DEBUG - Detected 122948 variants in 107599 reads
2012-10-07 17:04:15,749 - DEBUG - Detected 126838 variants in 131470 reads
2012-10-07 17:04:16,548 - DEBUG - Detected 131098 variants in 124505 reads
2012-10-07 17:04:17,279 - DEBUG - Detected 135736 variants in 113539 reads
2012-10-07 17:04:17,949 - DEBUG - Detected 140041 variants in 108397 reads
2012-10-07 17:04:19,825 - DEBUG - Taking top 8 variants by coverage in window 9:42010358-42010359
2012-10-07 17:04:21,532 - DEBUG - Taking top 8 variants by coverage in window 9:42028111-42028112
2012-10-07 17:04:22,379 - DEBUG - Taking top 8 variants by coverage in window 9:42035812-42035824
2012-10-07 17:04:22,694 - DEBUG - Taking top 8 variants by coverage in window 9:42037237-42037238
2012-10-07 17:04:23,039 - DEBUG - Taking top 8 variants by coverage in window 9:42040698-42040709
2012-10-07 17:04:23,125 - DEBUG - Taking top 8 variants by coverage in window 9:42040746-42040747
2012-10-07 17:04:23,749 - DEBUG - Taking top 8 variants by coverage in window 9:42045893-42045921
2012-10-07 17:04:23,897 - DEBUG - Taking top 8 variants by coverage in window 9:42047207-42047208
2012-10-07 17:04:25,048 - DEBUG - Taking top 8 variants by coverage in window 9:42062733-42062736
2012-10-07 17:04:25,710 - DEBUG - Taking top 8 variants by coverage in window 9:42068829-42068830
2012-10-07 17:04:26,245 - DEBUG - Taking top 8 variants by coverage in window 9:42077829-42077830
2012-10-07 17:04:26,259 - DEBUG - Taking top 8 variants by coverage in window 9:42077849-42077850
2012-10-07 17:04:26,651 - DEBUG - Taking top 8 variants by coverage in window 9:42082906-42082907
2012-10-07 17:04:26,963 - DEBUG - Taking top 8 variants by coverage in window 9:42086498-42086500
2012-10-07 17:04:27,396 - DEBUG - Taking top 8 variants by coverage in window 9:42093011-42093013
2012-10-07 17:04:29,033 - DEBUG - Taking top 8 variants by coverage in window 9:42114659-42114660
2012-10-07 17:04:29,141 - DEBUG - Taking top 8 variants by coverage in window 9:42117100-42117113
2012-10-07 17:04:29,647 - DEBUG - Taking top 8 variants by coverage in window 9:42123917-42123918
2012-10-07 17:04:30,082 - DEBUG - Taking top 8 variants by coverage in window 9:42131783-42131784
2012-10-07 17:04:30,182 - DEBUG - Taking top 8 variants by coverage in window 9:42133035-42133045
2012-10-07 17:04:30,793 - DEBUG - Taking top 8 variants by coverage in window 9:42146563-42146564
2012-10-07 17:04:32,119 - DEBUG - Taking top 8 variants by coverage in window 9:42165312-42165322
2012-10-07 17:04:32,133 - DEBUG - Taking top 8 variants by coverage in window 9:42165326-42165336
2012-10-07 17:04:32,994 - DEBUG - Taking top 8 variants by coverage in window 9:42178015-42178017
2012-10-07 17:04:33,155 - DEBUG - Taking top 8 variants by coverage in window 9:42178113-42178117
2012-10-07 17:04:33,283 - DEBUG - Taking top 8 variants by coverage in window 9:42178126-42178134
2012-10-07 17:04:33,591 - DEBUG - Taking top 8 variants by coverage in window 9:42180692-42180716
2012-10-07 17:04:34,532 - DEBUG - Taking top 8 variants by coverage in window 9:42195985-42195986
2012-10-07 17:04:34,742 - DEBUG - Taking top 8 variants by coverage in window 9:42197927-42197928
2012-10-07 17:04:35,122 - DEBUG - Taking top 8 variants by coverage in window 9:42202683-42202686
2012-10-07 17:04:35,371 - DEBUG - Taking top 8 variants by coverage in window 9:42207123-42207128
2012-10-07 17:04:35,445 - DEBUG - Taking top 8 variants by coverage in window 9:42208799-42208800
2012-10-07 17:04:35,917 - DEBUG - Taking top 8 variants by coverage in window 9:42216211-42216215
2012-10-07 17:04:36,326 - DEBUG - Taking top 8 variants by coverage in window 9:42216314-42216321
2012-10-07 17:04:36,453 - DEBUG - Taking top 8 variants by coverage in window 9:42216332-42216338
2012-10-07 17:04:36,537 - DEBUG - Taking top 8 variants by coverage in window 9:42216360-42216369
2012-10-07 17:04:36,664 - DEBUG - Taking top 8 variants by coverage in window 9:42216383-42216390
2012-10-07 17:04:38,112 - DEBUG - Taking top 8 variants by coverage in window 9:42229993-42230001
2012-10-07 17:04:38,373 - DEBUG - Taking top 8 variants by coverage in window 9:42233719-42233721
2012-10-07 17:04:39,036 - DEBUG - Taking top 8 variants by coverage in window 9:42243395-42243396
2012-10-07 17:04:39,258 - DEBUG - Taking top 8 variants by coverage in window 9:42244305-42244306
2012-10-07 17:04:39,818 - DEBUG - Taking top 8 variants by coverage in window 9:42253214-42253215
2012-10-07 17:04:39,942 - DEBUG - Taking top 8 variants by coverage in window 9:42254830-42254831
2012-10-07 17:04:41,726 - DEBUG - Taking top 8 variants by coverage in window 9:42274609-42274610
2012-10-07 17:04:41,743 - DEBUG - Taking top 8 variants by coverage in window 9:42274615-42274616
2012-10-07 17:04:42,313 - DEBUG - Taking top 8 variants by coverage in window 9:42280850-42280851
2012-10-07 17:04:42,534 - DEBUG - Taking top 8 variants by coverage in window 9:42282416-42282417
2012-10-07 17:04:42,549 - DEBUG - Taking top 8 variants by coverage in window 9:42282426-42282427
2012-10-07 17:04:43,560 - DEBUG - Taking top 8 variants by coverage in window 9:42293659-42293660
2012-10-07 17:04:44,819 - DEBUG - Taking top 8 variants by coverage in window 9:42305749-42305750
2012-10-07 17:04:45,676 - DEBUG - Taking top 8 variants by coverage in window 9:42314338-42314339
2012-10-07 17:04:46,238 - DEBUG - Taking top 8 variants by coverage in window 9:42322604-42322605
2012-10-07 17:04:46,391 - DEBUG - Taking top 8 variants by coverage in window 9:42322615-42322616
2012-10-07 17:04:46,725 - DEBUG - Taking top 8 variants by coverage in window 9:42325395-42325396
2012-10-07 17:04:47,353 - DEBUG - Taking top 8 variants by coverage in window 9:42333490-42333491
2012-10-07 17:04:47,507 - DEBUG - Taking top 8 variants by coverage in window 9:42333697-42333698
2012-10-07 17:04:47,661 - DEBUG - Taking top 8 variants by coverage in window 9:42334657-42334658
2012-10-07 17:04:47,950 - DEBUG - Taking top 8 variants by coverage in window 9:42337561-42337562
2012-10-07 17:04:48,190 - DEBUG - Taking top 8 variants by coverage in window 9:42340891-42340892
2012-10-07 17:04:48,561 - DEBUG - Taking top 8 variants by coverage in window 9:42343197-42343198
2012-10-07 17:04:48,584 - DEBUG - Taking top 8 variants by coverage in window 9:42343201-42343203
2012-10-07 17:04:49,021 - DEBUG - Taking top 8 variants by coverage in window 9:42347023-42347024
2012-10-07 17:04:49,146 - DEBUG - Taking top 8 variants by coverage in window 9:42348104-42348105
2012-10-07 17:04:49,423 - DEBUG - Taking top 8 variants by coverage in window 9:42349480-42349481
2012-10-07 17:04:50,469 - DEBUG - Taking top 8 variants by coverage in window 9:42362512-42362517
2012-10-07 17:04:50,499 - DEBUG - Taking top 8 variants by coverage in window 9:42362548-42362549
2012-10-07 17:04:50,507 - DEBUG - Taking top 8 variants by coverage in window 9:42362562-42362563
2012-10-07 17:04:50,787 - DEBUG - Taking top 8 variants by coverage in window 9:42364305-42364317
2012-10-07 17:04:52,274 - DEBUG - Taking top 8 variants by coverage in window 9:42378368-42378369
2012-10-07 17:04:53,812 - DEBUG - Taking top 8 variants by coverage in window 9:42393657-42393658
2012-10-07 17:04:54,806 - DEBUG - Taking top 8 variants by coverage in window 9:42402647-42402648
2012-10-07 17:04:56,788 - DEBUG - Taking top 8 variants by coverage in window 9:42425246-42425247
2012-10-07 17:04:57,663 - DEBUG - Taking top 8 variants by coverage in window 9:42433580-42433582
2012-10-07 17:04:59,087 - DEBUG - Taking top 8 variants by coverage in window 9:42448324-42448325
2012-10-07 17:04:59,632 - DEBUG - Taking top 8 variants by coverage in window 9:42454029-42454030
2012-10-07 17:05:00,753 - DEBUG - Taking top 8 variants by coverage in window 9:42466396-42466406
2012-10-07 17:05:00,920 - DEBUG - Taking top 8 variants by coverage in window 9:42466710-42466711
2012-10-07 17:05:01,739 - DEBUG - Taking top 8 variants by coverage in window 9:42474883-42474884
2012-10-07 17:05:02,346 - DEBUG - Taking top 8 variants by coverage in window 9:42480593-42480604
2012-10-07 17:05:02,939 - DEBUG - Taking top 8 variants by coverage in window 9:42487532-42487533
2012-10-07 17:05:03,016 - DEBUG - Taking top 8 variants by coverage in window 9:42487571-42487575
2012-10-07 17:05:03,258 - DEBUG - Taking top 8 variants by coverage in window 9:42487655-42487657
2012-10-07 17:05:03,537 - DEBUG - Taking top 8 variants by coverage in window 9:42487772-42487780
2012-10-07 17:05:04,598 - DEBUG - Taking top 8 variants by coverage in window 9:42495749-42495755
2012-10-07 17:05:04,690 - DEBUG - Taking top 8 variants by coverage in window 9:42496840-42496841
2012-10-07 17:05:04,747 - DEBUG - Taking top 8 variants by coverage in window 9:42496868-42496869
2012-10-07 17:05:04,933 - DEBUG - Taking top 8 variants by coverage in window 9:42498542-42498543
2012-10-07 17:05:04,970 - DEBUG - Taking top 8 variants by coverage in window 9:42498559-42498560
2012-10-07 17:05:05,689 - DEBUG - Taking top 8 variants by coverage in window 9:42505393-42505394
2012-10-07 17:05:05,842 - DEBUG - Taking top 8 variants by coverage in window 9:42506382-42506383
2012-10-07 17:05:06,191 - DEBUG - Taking top 8 variants by coverage in window 9:42509694-42509695
2012-10-07 17:05:06,572 - DEBUG - Taking top 8 variants by coverage in window 9:42514912-42514918
2012-10-07 17:05:07,154 - DEBUG - Taking top 8 variants by coverage in window 9:42519130-42519133
2012-10-07 17:05:07,237 - DEBUG - Taking top 8 variants by coverage in window 9:42519148-42519149
2012-10-07 17:05:07,631 - DEBUG - Taking top 8 variants by coverage in window 9:42524035-42524036
2012-10-07 17:05:08,282 - DEBUG - Taking top 8 variants by coverage in window 9:42527541-42527548
2012-10-07 17:05:08,940 - DEBUG - Taking top 8 variants by coverage in window 9:42532944-42532945
2012-10-07 17:05:08,971 - DEBUG - Taking top 8 variants by coverage in window 9:42532949-42532954
2012-10-07 17:05:08,990 - DEBUG - Taking top 8 variants by coverage in window 9:42532956-42532957
2012-10-07 17:05:09,204 - DEBUG - Taking top 8 variants by coverage in window 9:42534169-42534170
2012-10-07 17:05:09,239 - DEBUG - Taking top 8 variants by coverage in window 9:42534175-42534176
2012-10-07 17:05:09,546 - DEBUG - Taking top 8 variants by coverage in window 9:42534985-42534986
2012-10-07 17:05:10,109 - DEBUG - Taking top 8 variants by coverage in window 9:42541435-42541436
2012-10-07 17:05:10,702 - DEBUG - Taking top 8 variants by coverage in window 9:42543090-42543091
2012-10-07 17:05:11,309 - DEBUG - Taking top 8 variants by coverage in window 9:42548859-42548860
2012-10-07 17:05:11,893 - DEBUG - Taking top 8 variants by coverage in window 9:42553284-42553292
2012-10-07 17:05:11,952 - DEBUG - Taking top 8 variants by coverage in window 9:42553308-42553316
2012-10-07 17:05:13,841 - DEBUG - Taking top 8 variants by coverage in window 9:42558832-42558836
2012-10-07 17:05:13,963 - DEBUG - Taking top 8 variants by coverage in window 9:42558850-42558854
2012-10-07 17:05:14,009 - DEBUG - Taking top 8 variants by coverage in window 9:42558856-42558862
2012-10-07 17:05:14,246 - DEBUG - Taking top 8 variants by coverage in window 9:42558870-42558874
2012-10-07 17:05:14,790 - DEBUG - Taking top 8 variants by coverage in window 9:42559067-42559068
2012-10-07 17:05:15,075 - DEBUG - Taking top 8 variants by coverage in window 9:42561872-42561873
2012-10-07 17:05:15,134 - DEBUG - Taking top 8 variants by coverage in window 9:42561984-42561985
2012-10-07 17:05:15,475 - DEBUG - Taking top 8 variants by coverage in window 9:42563427-42563431
2012-10-07 17:05:16,352 - DEBUG - Taking top 8 variants by coverage in window 9:42569916-42569917
2012-10-07 17:05:16,372 - DEBUG - Taking top 8 variants by coverage in window 9:42569917-42569918
2012-10-07 17:05:16,761 - DEBUG - Taking top 8 variants by coverage in window 9:42573859-42573871
2012-10-07 17:05:16,874 - DEBUG - Taking top 8 variants by coverage in window 9:42574349-42574350
2012-10-07 17:05:17,518 - DEBUG - Taking top 8 variants by coverage in window 9:42580083-42580084
2012-10-07 17:05:18,540 - DEBUG - Taking top 8 variants by coverage in window 9:42590257-42590258
2012-10-07 17:05:18,575 - DEBUG - Taking top 8 variants by coverage in window 9:42590280-42590294
2012-10-07 17:05:18,665 - DEBUG - Taking top 8 variants by coverage in window 9:42590320-42590344
2012-10-07 17:05:22,767 - DEBUG - Taking top 8 variants by coverage in window 9:42595017-42595018
2012-10-07 17:05:25,154 - DEBUG - Taking top 8 variants by coverage in window 9:42624470-42624472
2012-10-07 17:05:25,565 - DEBUG - Taking top 8 variants by coverage in window 9:42624728-42624731
2012-10-07 17:05:25,815 - DEBUG - Taking top 8 variants by coverage in window 9:42624746-42624750
2012-10-07 17:05:26,120 - DEBUG - Taking top 8 variants by coverage in window 9:42626906-42626908
2012-10-07 17:05:26,918 - DEBUG - Taking top 8 variants by coverage in window 9:42636595-42636600
2012-10-07 17:05:26,961 - DEBUG - Taking top 8 variants by coverage in window 9:42636632-42636633
2012-10-07 17:05:27,112 - DEBUG - Taking top 8 variants by coverage in window 9:42638361-42638362
2012-10-07 17:05:27,525 - DEBUG - Taking top 8 variants by coverage in window 9:42643611-42643622
2012-10-07 17:05:28,467 - DEBUG - Taking top 8 variants by coverage in window 9:42654271-42654273
2012-10-07 17:05:28,491 - DEBUG - Taking top 8 variants by coverage in window 9:42654278-42654280
2012-10-07 17:05:28,504 - DEBUG - Taking top 8 variants by coverage in window 9:42654282-42654283
2012-10-07 17:05:28,516 - DEBUG - Taking top 8 variants by coverage in window 9:42654288-42654289
2012-10-07 17:05:29,160 - DEBUG - Taking top 8 variants by coverage in window 9:42661538-42661539
2012-10-07 17:05:29,264 - DEBUG - Taking top 8 variants by coverage in window 9:42661980-42661981
2012-10-07 17:05:29,924 - DEBUG - Taking top 8 variants by coverage in window 9:42670126-42670127
2012-10-07 17:05:29,930 - DEBUG - Taking top 8 variants by coverage in window 9:42670128-42670132
2012-10-07 17:05:30,253 - DEBUG - Taking top 8 variants by coverage in window 9:42672155-42672156
2012-10-07 17:05:30,272 - DEBUG - Taking top 8 variants by coverage in window 9:42672231-42672234
2012-10-07 17:05:30,380 - DEBUG - Taking top 8 variants by coverage in window 9:42672243-42672244
2012-10-07 17:05:30,683 - DEBUG - Taking top 8 variants by coverage in window 9:42675224-42675225
2012-10-07 17:05:33,986 - DEBUG - Taking top 8 variants by coverage in window 9:42714009-42714014
2012-10-07 17:05:35,552 - DEBUG - Taking top 8 variants by coverage in window 9:42731194-42731195
2012-10-07 17:05:36,520 - DEBUG - Taking top 8 variants by coverage in window 9:42743409-42743410
2012-10-07 17:05:36,537 - DEBUG - Taking top 8 variants by coverage in window 9:42743412-42743413
2012-10-07 17:05:37,472 - DEBUG - Taking top 8 variants by coverage in window 9:42759841-42759842
2012-10-07 17:05:37,528 - DEBUG - Taking top 8 variants by coverage in window 9:42760191-42760192
2012-10-07 17:05:37,691 - DEBUG - Taking top 8 variants by coverage in window 9:42761970-42761971
2012-10-07 17:05:38,394 - DEBUG - Taking top 8 variants by coverage in window 9:42772521-42772526
2012-10-07 17:05:38,407 - DEBUG - Taking top 8 variants by coverage in window 9:42772527-42772528
2012-10-07 17:05:38,477 - DEBUG - Taking top 8 variants by coverage in window 9:42772580-42772586
2012-10-07 17:05:38,549 - DEBUG - Taking top 8 variants by coverage in window 9:42772599-42772600
2012-10-07 17:05:39,082 - DEBUG - Taking top 8 variants by coverage in window 9:42779976-42779977
2012-10-07 17:05:39,101 - DEBUG - Taking top 8 variants by coverage in window 9:42779991-42779992
2012-10-07 17:05:39,175 - DEBUG - Taking top 8 variants by coverage in window 9:42781838-42781848
2012-10-07 17:05:39,990 - DEBUG - Taking top 8 variants by coverage in window 9:42799273-42799275
2012-10-07 17:05:40,031 - DEBUG - Taking top 8 variants by coverage in window 9:42799845-42799846
2012-10-07 17:05:40,139 - DEBUG - Taking top 8 variants by coverage in window 9:42801455-42801456
2012-10-07 17:05:40,289 - DEBUG - Taking top 8 variants by coverage in window 9:42805126-42805127
2012-10-07 17:05:40,352 - DEBUG - Taking top 8 variants by coverage in window 9:42806893-42806894
2012-10-07 17:05:40,469 - DEBUG - Taking top 8 variants by coverage in window 9:42810915-42810919
2012-10-07 17:05:41,505 - DEBUG - Taking top 8 variants by coverage in window 9:42831266-42831269
2012-10-07 17:05:41,837 - DEBUG - Taking top 8 variants by coverage in window 9:42841875-42841876
2012-10-07 17:05:41,872 - DEBUG - Taking top 8 variants by coverage in window 9:42842042-42842043
2012-10-07 17:05:42,011 - DEBUG - Taking top 8 variants by coverage in window 9:42845685-42845689
2012-10-07 17:05:42,203 - DEBUG - Taking top 8 variants by coverage in window 9:42849326-42849327
2012-10-07 17:05:43,535 - DEBUG - Taking top 8 variants by coverage in window 9:42875556-42875560
2012-10-07 17:05:43,550 - DEBUG - Taking top 8 variants by coverage in window 9:42875568-42875569
2012-10-07 17:05:43,764 - DEBUG - Taking top 8 variants by coverage in window 9:42885484-42885485
2012-10-07 17:05:44,058 - DEBUG - Taking top 8 variants by coverage in window 9:42897282-42897290
2012-10-07 17:05:44,074 - DEBUG - Taking top 8 variants by coverage in window 9:42897315-42897326
2012-10-07 17:05:44,284 - DEBUG - Taking top 8 variants by coverage in window 9:42903555-42903556
2012-10-07 17:05:44,642 - DEBUG - Taking top 8 variants by coverage in window 9:42914629-42914631
2012-10-07 17:05:45,317 - DEBUG - Taking top 8 variants by coverage in window 9:42928849-42928850
2012-10-07 17:05:46,284 - DEBUG - Taking top 8 variants by coverage in window 9:42943134-42943135
2012-10-07 17:05:46,679 - DEBUG - Taking top 8 variants by coverage in window 9:42947093-42947094
2012-10-07 17:05:46,847 - DEBUG - Taking top 8 variants by coverage in window 9:42948726-42948732
2012-10-07 17:05:46,863 - DEBUG - Taking top 8 variants by coverage in window 9:42948740-42948741
2012-10-07 17:05:47,038 - DEBUG - Taking top 8 variants by coverage in window 9:42950547-42950548
2012-10-07 17:05:47,511 - DEBUG - Taking top 8 variants by coverage in window 9:42955578-42955596
2012-10-07 17:05:47,685 - DEBUG - Taking top 8 variants by coverage in window 9:42956273-42956274
2012-10-07 17:05:48,559 - DEBUG - Taking top 8 variants by coverage in window 9:42966345-42966346
2012-10-07 17:05:49,235 - DEBUG - Taking top 8 variants by coverage in window 9:42974909-42974910
2012-10-07 17:05:49,413 - DEBUG - Taking top 8 variants by coverage in window 9:42976737-42976738
2012-10-07 17:05:49,896 - DEBUG - Taking top 8 variants by coverage in window 9:42983500-42983501
2012-10-07 17:05:50,671 - DEBUG - Taking top 8 variants by coverage in window 9:42993400-42993401
2012-10-07 17:05:50,684 - DEBUG - Taking top 8 variants by coverage in window 9:42993423-42993424
2012-10-07 17:05:50,716 - DEBUG - Taking top 8 variants by coverage in window 9:42993731-42993737
2012-10-07 17:05:50,733 - DEBUG - Taking top 8 variants by coverage in window 9:42993792-42993826
2012-10-07 17:05:52,208 - DEBUG - Read 109070 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 17:05:52,489 - DEBUG - Read 119838 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 17:05:52,780 - DEBUG - Read 135569 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 17:05:53,120 - DEBUG - Read 139529 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 17:05:53,436 - DEBUG - Read 129068 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 17:05:53,715 - DEBUG - Read 122755 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 17:05:54,005 - DEBUG - Read 129390 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 17:05:54,296 - DEBUG - Read 120784 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 17:05:54,570 - DEBUG - Read 115758 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 17:05:54,841 - DEBUG - Read 110344 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 17:05:55,136 - DEBUG - Read 126191 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 17:05:55,401 - DEBUG - Read 116123 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 17:05:55,681 - DEBUG - Read 118997 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 17:05:55,999 - DEBUG - Read 129777 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 17:05:56,305 - DEBUG - Read 138044 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 17:05:56,566 - DEBUG - Read 108308 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 17:05:56,855 - DEBUG - Read 132442 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 17:05:57,143 - DEBUG - Read 123337 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 17:05:57,406 - DEBUG - Read 116701 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 17:05:57,672 - DEBUG - Read 107719 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 17:05:57,794 - DEBUG - Detected 23917 variants in 109070 reads
2012-10-07 17:05:57,980 - DEBUG - Detected 35069 variants in 119838 reads
2012-10-07 17:05:58,229 - DEBUG - Detected 46105 variants in 135569 reads
2012-10-07 17:05:58,528 - DEBUG - Detected 54299 variants in 139529 reads
2012-10-07 17:05:58,849 - DEBUG - Detected 61410 variants in 129068 reads
2012-10-07 17:05:59,203 - DEBUG - Detected 67772 variants in 122755 reads
2012-10-07 17:05:59,601 - DEBUG - Detected 82303 variants in 129390 reads
2012-10-07 17:06:00,074 - DEBUG - Detected 88094 variants in 120784 reads
2012-10-07 17:06:00,550 - DEBUG - Detected 94014 variants in 115758 reads
2012-10-07 17:06:01,048 - DEBUG - Detected 98750 variants in 110344 reads
2012-10-07 17:06:01,580 - DEBUG - Detected 103846 variants in 126191 reads
2012-10-07 17:06:02,125 - DEBUG - Detected 108984 variants in 116123 reads
2012-10-07 17:06:02,697 - DEBUG - Detected 113818 variants in 118997 reads
2012-10-07 17:06:03,337 - DEBUG - Detected 119144 variants in 129777 reads
2012-10-07 17:06:03,977 - DEBUG - Detected 127497 variants in 138044 reads
2012-10-07 17:06:04,634 - DEBUG - Detected 132036 variants in 108308 reads
2012-10-07 17:06:05,334 - DEBUG - Detected 136448 variants in 132442 reads
2012-10-07 17:06:06,087 - DEBUG - Detected 142129 variants in 123337 reads
2012-10-07 17:06:06,817 - DEBUG - Detected 146855 variants in 116701 reads
2012-10-07 17:06:07,551 - DEBUG - Detected 151303 variants in 107719 reads
2012-10-07 17:06:09,073 - DEBUG - Taking top 8 variants by coverage in window 9:43005006-43005007
2012-10-07 17:06:09,276 - DEBUG - Taking top 8 variants by coverage in window 9:43005470-43005476
2012-10-07 17:06:09,367 - DEBUG - Taking top 8 variants by coverage in window 9:43006678-43006687
2012-10-07 17:06:09,878 - DEBUG - Taking top 8 variants by coverage in window 9:43017881-43017882
2012-10-07 17:06:10,711 - DEBUG - Taking top 8 variants by coverage in window 9:43028580-43028587
2012-10-07 17:06:11,877 - DEBUG - Taking top 8 variants by coverage in window 9:43039853-43039854
2012-10-07 17:06:12,374 - DEBUG - Taking top 8 variants by coverage in window 9:43042218-43042219
2012-10-07 17:06:12,526 - DEBUG - Taking top 8 variants by coverage in window 9:43043132-43043133
2012-10-07 17:06:12,533 - DEBUG - Taking top 8 variants by coverage in window 9:43043133-43043134
2012-10-07 17:06:12,557 - DEBUG - Taking top 8 variants by coverage in window 9:43043149-43043150
2012-10-07 17:06:13,632 - DEBUG - Taking top 8 variants by coverage in window 9:43056140-43056141
2012-10-07 17:06:13,945 - DEBUG - Taking top 8 variants by coverage in window 9:43059165-43059166
2012-10-07 17:06:14,187 - DEBUG - Taking top 8 variants by coverage in window 9:43062067-43062068
2012-10-07 17:06:14,756 - DEBUG - Taking top 8 variants by coverage in window 9:43067497-43067498
2012-10-07 17:06:14,970 - DEBUG - Taking top 8 variants by coverage in window 9:43068782-43068784
2012-10-07 17:06:15,005 - DEBUG - Taking top 8 variants by coverage in window 9:43068811-43068823
2012-10-07 17:06:15,337 - DEBUG - Taking top 8 variants by coverage in window 9:43069153-43069156
2012-10-07 17:06:15,873 - DEBUG - Taking top 8 variants by coverage in window 9:43074182-43074183
2012-10-07 17:06:16,005 - DEBUG - Taking top 8 variants by coverage in window 9:43074881-43074882
2012-10-07 17:06:16,083 - DEBUG - Taking top 8 variants by coverage in window 9:43074922-43074923
2012-10-07 17:06:16,438 - DEBUG - Taking top 8 variants by coverage in window 9:43078109-43078113
2012-10-07 17:06:17,843 - DEBUG - Taking top 8 variants by coverage in window 9:43088469-43088470
2012-10-07 17:06:17,866 - DEBUG - Taking top 8 variants by coverage in window 9:43088475-43088476
2012-10-07 17:06:18,252 - DEBUG - Taking top 8 variants by coverage in window 9:43091549-43091551
2012-10-07 17:06:18,637 - DEBUG - Taking top 8 variants by coverage in window 9:43095291-43095296
2012-10-07 17:06:18,649 - DEBUG - Taking top 8 variants by coverage in window 9:43095321-43095322
2012-10-07 17:06:18,806 - DEBUG - Taking top 8 variants by coverage in window 9:43096723-43096724
2012-10-07 17:06:19,453 - DEBUG - Taking top 8 variants by coverage in window 9:43098098-43098099
2012-10-07 17:06:20,073 - DEBUG - Taking top 8 variants by coverage in window 9:43105535-43105536
2012-10-07 17:06:21,296 - DEBUG - Taking top 8 variants by coverage in window 9:43118084-43118098
2012-10-07 17:06:24,491 - DEBUG - Taking top 8 variants by coverage in window 9:43154843-43154844
2012-10-07 17:06:24,941 - DEBUG - Taking top 8 variants by coverage in window 9:43159323-43159325
2012-10-07 17:06:25,852 - DEBUG - Taking top 8 variants by coverage in window 9:43174458-43174459
2012-10-07 17:06:26,094 - DEBUG - Taking top 8 variants by coverage in window 9:43177574-43177576
2012-10-07 17:06:26,144 - DEBUG - Taking top 8 variants by coverage in window 9:43178035-43178036
2012-10-07 17:06:26,473 - DEBUG - Taking top 8 variants by coverage in window 9:43180563-43180564
2012-10-07 17:06:26,624 - DEBUG - Taking top 8 variants by coverage in window 9:43183686-43183687
2012-10-07 17:06:26,758 - DEBUG - Taking top 8 variants by coverage in window 9:43186481-43186482
2012-10-07 17:06:28,086 - DEBUG - Taking top 8 variants by coverage in window 9:43203170-43203171
2012-10-07 17:06:28,830 - DEBUG - Taking top 8 variants by coverage in window 9:43209416-43209417
2012-10-07 17:06:28,868 - DEBUG - Taking top 8 variants by coverage in window 9:43209457-43209458
2012-10-07 17:06:28,878 - DEBUG - Taking top 8 variants by coverage in window 9:43209458-43209460
2012-10-07 17:06:28,990 - DEBUG - Taking top 8 variants by coverage in window 9:43210744-43210745
2012-10-07 17:06:30,966 - DEBUG - Taking top 8 variants by coverage in window 9:43236980-43236981
2012-10-07 17:06:31,008 - DEBUG - Taking top 8 variants by coverage in window 9:43236993-43236995
2012-10-07 17:06:31,057 - DEBUG - Taking top 8 variants by coverage in window 9:43237006-43237007
2012-10-07 17:06:31,120 - DEBUG - Taking top 8 variants by coverage in window 9:43237020-43237021
2012-10-07 17:06:31,282 - DEBUG - Taking top 8 variants by coverage in window 9:43237430-43237431
2012-10-07 17:06:31,321 - DEBUG - Taking top 8 variants by coverage in window 9:43237890-43237891
2012-10-07 17:06:31,344 - DEBUG - Taking top 8 variants by coverage in window 9:43237955-43237956
2012-10-07 17:06:31,496 - DEBUG - Taking top 8 variants by coverage in window 9:43240366-43240369
2012-10-07 17:06:31,575 - DEBUG - Taking top 8 variants by coverage in window 9:43241631-43241634
2012-10-07 17:06:32,642 - DEBUG - Taking top 8 variants by coverage in window 9:43254956-43254970
2012-10-07 17:06:32,788 - DEBUG - Taking top 8 variants by coverage in window 9:43256084-43256095
2012-10-07 17:06:32,839 - DEBUG - Taking top 8 variants by coverage in window 9:43256125-43256126
2012-10-07 17:06:32,947 - DEBUG - Taking top 8 variants by coverage in window 9:43256310-43256315
2012-10-07 17:06:33,000 - DEBUG - Taking top 8 variants by coverage in window 9:43256330-43256331
2012-10-07 17:06:33,133 - DEBUG - Taking top 8 variants by coverage in window 9:43258483-43258484
2012-10-07 17:06:34,252 - DEBUG - Taking top 8 variants by coverage in window 9:43271912-43271913
2012-10-07 17:06:35,157 - DEBUG - Taking top 8 variants by coverage in window 9:43281188-43281191
2012-10-07 17:06:35,188 - DEBUG - Taking top 8 variants by coverage in window 9:43281329-43281330
2012-10-07 17:06:35,348 - DEBUG - Taking top 8 variants by coverage in window 9:43282930-43282931
2012-10-07 17:06:35,533 - DEBUG - Taking top 8 variants by coverage in window 9:43285698-43285700
2012-10-07 17:06:35,566 - DEBUG - Taking top 8 variants by coverage in window 9:43285895-43285896
2012-10-07 17:06:36,799 - DEBUG - Taking top 8 variants by coverage in window 9:43301360-43301361
2012-10-07 17:06:36,876 - DEBUG - Taking top 8 variants by coverage in window 9:43302140-43302141
2012-10-07 17:06:37,790 - DEBUG - Taking top 8 variants by coverage in window 9:43318663-43318664
2012-10-07 17:06:38,260 - DEBUG - Taking top 8 variants by coverage in window 9:43324436-43324438
2012-10-07 17:06:38,712 - DEBUG - Taking top 8 variants by coverage in window 9:43328501-43328502
2012-10-07 17:06:41,701 - DEBUG - Taking top 8 variants by coverage in window 9:43378705-43378706
2012-10-07 17:06:41,838 - DEBUG - Taking top 8 variants by coverage in window 9:43380991-43380992
2012-10-07 17:06:41,856 - DEBUG - Taking top 8 variants by coverage in window 9:43381254-43381256
2012-10-07 17:06:42,171 - DEBUG - Taking top 8 variants by coverage in window 9:43386924-43386932
2012-10-07 17:06:42,256 - DEBUG - Taking top 8 variants by coverage in window 9:43386939-43386940
2012-10-07 17:06:43,466 - DEBUG - Taking top 8 variants by coverage in window 9:43402776-43402777
2012-10-07 17:06:43,489 - DEBUG - Taking top 8 variants by coverage in window 9:43402784-43402785
2012-10-07 17:06:43,788 - DEBUG - Taking top 8 variants by coverage in window 9:43403491-43403492
2012-10-07 17:06:43,872 - DEBUG - Taking top 8 variants by coverage in window 9:43403520-43403521
2012-10-07 17:06:44,398 - DEBUG - Taking top 8 variants by coverage in window 9:43409522-43409523
2012-10-07 17:06:44,530 - DEBUG - Taking top 8 variants by coverage in window 9:43410166-43410167
2012-10-07 17:06:44,929 - DEBUG - Taking top 8 variants by coverage in window 9:43414208-43414209
2012-10-07 17:06:47,332 - DEBUG - Taking top 8 variants by coverage in window 9:43445518-43445519
2012-10-07 17:06:47,418 - DEBUG - Taking top 8 variants by coverage in window 9:43445780-43445787
2012-10-07 17:06:47,515 - DEBUG - Taking top 8 variants by coverage in window 9:43445793-43445794
2012-10-07 17:06:47,694 - DEBUG - Taking top 8 variants by coverage in window 9:43445849-43445850
2012-10-07 17:06:47,725 - DEBUG - Taking top 8 variants by coverage in window 9:43445864-43445868
2012-10-07 17:06:47,755 - DEBUG - Taking top 8 variants by coverage in window 9:43445886-43445887
2012-10-07 17:06:47,816 - DEBUG - Taking top 8 variants by coverage in window 9:43445935-43445946
2012-10-07 17:06:47,923 - DEBUG - Taking top 8 variants by coverage in window 9:43445971-43445975
2012-10-07 17:06:47,990 - DEBUG - Taking top 8 variants by coverage in window 9:43446002-43446003
2012-10-07 17:06:48,011 - DEBUG - Taking top 8 variants by coverage in window 9:43446003-43446006
2012-10-07 17:06:48,194 - DEBUG - Taking top 8 variants by coverage in window 9:43446121-43446127
2012-10-07 17:06:49,115 - DEBUG - Taking top 8 variants by coverage in window 9:43453311-43453313
2012-10-07 17:06:49,154 - DEBUG - Taking top 8 variants by coverage in window 9:43453499-43453511
2012-10-07 17:06:49,643 - DEBUG - Taking top 8 variants by coverage in window 9:43458085-43458101
2012-10-07 17:06:49,784 - DEBUG - Taking top 8 variants by coverage in window 9:43458157-43458165
2012-10-07 17:06:50,980 - DEBUG - Taking top 8 variants by coverage in window 9:43466383-43466384
2012-10-07 17:06:51,626 - DEBUG - Taking top 8 variants by coverage in window 9:43471677-43471678
2012-10-07 17:06:53,736 - DEBUG - Taking top 8 variants by coverage in window 9:43496541-43496544
2012-10-07 17:06:54,154 - DEBUG - Taking top 8 variants by coverage in window 9:43498888-43498893
2012-10-07 17:06:54,267 - DEBUG - Taking top 8 variants by coverage in window 9:43500582-43500583
2012-10-07 17:06:54,710 - DEBUG - Taking top 8 variants by coverage in window 9:43505848-43505849
2012-10-07 17:06:54,773 - DEBUG - Taking top 8 variants by coverage in window 9:43506196-43506197
2012-10-07 17:06:54,967 - DEBUG - Taking top 8 variants by coverage in window 9:43506821-43506822
2012-10-07 17:06:54,977 - DEBUG - Taking top 8 variants by coverage in window 9:43506823-43506825
2012-10-07 17:06:55,999 - DEBUG - Taking top 8 variants by coverage in window 9:43518140-43518141
2012-10-07 17:06:56,342 - DEBUG - Taking top 8 variants by coverage in window 9:43521137-43521138
2012-10-07 17:06:56,767 - DEBUG - Taking top 8 variants by coverage in window 9:43522892-43522893
2012-10-07 17:06:56,779 - DEBUG - Taking top 8 variants by coverage in window 9:43522894-43522902
2012-10-07 17:06:58,079 - DEBUG - Taking top 8 variants by coverage in window 9:43526143-43526144
2012-10-07 17:06:58,139 - DEBUG - Taking top 8 variants by coverage in window 9:43526171-43526172
2012-10-07 17:06:58,287 - DEBUG - Taking top 8 variants by coverage in window 9:43527969-43527970
2012-10-07 17:06:58,867 - DEBUG - Taking top 8 variants by coverage in window 9:43538817-43538822
2012-10-07 17:06:59,039 - DEBUG - Taking top 8 variants by coverage in window 9:43540642-43540643
2012-10-07 17:06:59,344 - DEBUG - Taking top 8 variants by coverage in window 9:43544446-43544452
2012-10-07 17:07:00,285 - DEBUG - Taking top 8 variants by coverage in window 9:43558736-43558737
2012-10-07 17:07:00,840 - DEBUG - Taking top 8 variants by coverage in window 9:43571232-43571233
2012-10-07 17:07:01,550 - DEBUG - Taking top 8 variants by coverage in window 9:43580863-43580864
2012-10-07 17:07:02,116 - DEBUG - Taking top 8 variants by coverage in window 9:43589733-43589734
2012-10-07 17:07:02,362 - DEBUG - Taking top 8 variants by coverage in window 9:43591703-43591704
2012-10-07 17:07:02,422 - DEBUG - Taking top 8 variants by coverage in window 9:43592426-43592427
2012-10-07 17:07:02,435 - DEBUG - Taking top 8 variants by coverage in window 9:43592441-43592451
2012-10-07 17:07:02,451 - DEBUG - Taking top 8 variants by coverage in window 9:43592477-43592479
2012-10-07 17:07:02,610 - DEBUG - Taking top 8 variants by coverage in window 9:43593797-43593799
2012-10-07 17:07:02,652 - DEBUG - Taking top 8 variants by coverage in window 9:43594010-43594011
2012-10-07 17:07:02,932 - DEBUG - Taking top 8 variants by coverage in window 9:43595374-43595375
2012-10-07 17:07:03,169 - DEBUG - Taking top 8 variants by coverage in window 9:43597866-43597867
2012-10-07 17:07:04,033 - DEBUG - Taking top 8 variants by coverage in window 9:43617940-43617952
2012-10-07 17:07:04,425 - DEBUG - Taking top 8 variants by coverage in window 9:43621024-43621025
2012-10-07 17:07:04,729 - DEBUG - Taking top 8 variants by coverage in window 9:43624003-43624023
2012-10-07 17:07:04,812 - DEBUG - Taking top 8 variants by coverage in window 9:43624724-43624730
2012-10-07 17:07:05,422 - DEBUG - Taking top 8 variants by coverage in window 9:43628568-43628570
2012-10-07 17:07:05,736 - DEBUG - Taking top 8 variants by coverage in window 9:43631338-43631339
2012-10-07 17:07:06,746 - DEBUG - Taking top 8 variants by coverage in window 9:43645114-43645115
2012-10-07 17:07:06,787 - DEBUG - Taking top 8 variants by coverage in window 9:43645152-43645153
2012-10-07 17:07:06,814 - DEBUG - Taking top 8 variants by coverage in window 9:43645302-43645303
2012-10-07 17:07:06,974 - DEBUG - Taking top 8 variants by coverage in window 9:43646423-43646424
2012-10-07 17:07:07,844 - DEBUG - Taking top 8 variants by coverage in window 9:43656799-43656809
2012-10-07 17:07:08,391 - DEBUG - Taking top 8 variants by coverage in window 9:43663051-43663052
2012-10-07 17:07:08,489 - DEBUG - Taking top 8 variants by coverage in window 9:43663141-43663142
2012-10-07 17:07:08,665 - DEBUG - Taking top 8 variants by coverage in window 9:43664017-43664018
2012-10-07 17:07:08,751 - DEBUG - Taking top 8 variants by coverage in window 9:43664202-43664203
2012-10-07 17:07:09,006 - DEBUG - Taking top 8 variants by coverage in window 9:43665703-43665704
2012-10-07 17:07:09,811 - DEBUG - Taking top 8 variants by coverage in window 9:43675827-43675828
2012-10-07 17:07:10,103 - DEBUG - Taking top 8 variants by coverage in window 9:43677059-43677069
2012-10-07 17:07:10,426 - DEBUG - Taking top 8 variants by coverage in window 9:43678896-43678897
2012-10-07 17:07:10,616 - DEBUG - Taking top 8 variants by coverage in window 9:43681362-43681363
2012-10-07 17:07:10,883 - DEBUG - Taking top 8 variants by coverage in window 9:43685196-43685200
2012-10-07 17:07:11,541 - DEBUG - Taking top 8 variants by coverage in window 9:43691273-43691283
2012-10-07 17:07:12,273 - DEBUG - Taking top 8 variants by coverage in window 9:43698197-43698199
2012-10-07 17:07:12,319 - DEBUG - Taking top 8 variants by coverage in window 9:43698413-43698423
2012-10-07 17:07:12,637 - DEBUG - Taking top 8 variants by coverage in window 9:43700809-43700810
2012-10-07 17:07:13,126 - DEBUG - Taking top 8 variants by coverage in window 9:43704163-43704166
2012-10-07 17:07:13,183 - DEBUG - Taking top 8 variants by coverage in window 9:43704236-43704237
2012-10-07 17:07:13,216 - DEBUG - Taking top 8 variants by coverage in window 9:43704638-43704639
2012-10-07 17:07:14,415 - DEBUG - Taking top 8 variants by coverage in window 9:43717234-43717239
2012-10-07 17:07:15,154 - DEBUG - Taking top 8 variants by coverage in window 9:43719029-43719030
2012-10-07 17:07:17,757 - DEBUG - Taking top 8 variants by coverage in window 9:43751152-43751155
2012-10-07 17:07:17,778 - DEBUG - Taking top 8 variants by coverage in window 9:43751164-43751165
2012-10-07 17:07:18,288 - DEBUG - Taking top 8 variants by coverage in window 9:43755171-43755172
2012-10-07 17:07:19,147 - DEBUG - Taking top 8 variants by coverage in window 9:43768586-43768587
2012-10-07 17:07:19,396 - DEBUG - Taking top 8 variants by coverage in window 9:43768687-43768688
2012-10-07 17:07:19,457 - DEBUG - Taking top 8 variants by coverage in window 9:43768707-43768708
2012-10-07 17:07:19,780 - DEBUG - Taking top 8 variants by coverage in window 9:43772830-43772831
2012-10-07 17:07:19,856 - DEBUG - Taking top 8 variants by coverage in window 9:43773005-43773006
2012-10-07 17:07:20,059 - DEBUG - Taking top 8 variants by coverage in window 9:43775043-43775044
2012-10-07 17:07:20,270 - DEBUG - Taking top 8 variants by coverage in window 9:43776212-43776213
2012-10-07 17:07:20,289 - DEBUG - Taking top 8 variants by coverage in window 9:43776244-43776245
2012-10-07 17:07:21,173 - DEBUG - Taking top 8 variants by coverage in window 9:43785877-43785878
2012-10-07 17:07:21,219 - DEBUG - Taking top 8 variants by coverage in window 9:43785899-43785903
2012-10-07 17:07:21,486 - DEBUG - Taking top 8 variants by coverage in window 9:43785907-43785909
2012-10-07 17:07:21,978 - DEBUG - Taking top 8 variants by coverage in window 9:43786985-43786986
2012-10-07 17:07:22,267 - DEBUG - Taking top 8 variants by coverage in window 9:43790932-43790939
2012-10-07 17:07:23,528 - DEBUG - Taking top 8 variants by coverage in window 9:43810681-43810682
2012-10-07 17:07:23,542 - DEBUG - Taking top 8 variants by coverage in window 9:43810702-43810703
2012-10-07 17:07:24,292 - DEBUG - Taking top 8 variants by coverage in window 9:43817137-43817138
2012-10-07 17:07:24,603 - DEBUG - Taking top 8 variants by coverage in window 9:43820672-43820673
2012-10-07 17:07:25,373 - DEBUG - Taking top 8 variants by coverage in window 9:43830495-43830496
2012-10-07 17:07:25,604 - DEBUG - Taking top 8 variants by coverage in window 9:43831176-43831177
2012-10-07 17:07:26,036 - DEBUG - Taking top 8 variants by coverage in window 9:43833608-43833609
2012-10-07 17:07:26,204 - DEBUG - Taking top 8 variants by coverage in window 9:43835209-43835210
2012-10-07 17:07:26,790 - DEBUG - Taking top 8 variants by coverage in window 9:43839856-43839857
2012-10-07 17:07:27,362 - DEBUG - Taking top 8 variants by coverage in window 9:43848074-43848075
2012-10-07 17:07:27,374 - DEBUG - Taking top 8 variants by coverage in window 9:43848077-43848078
2012-10-07 17:07:27,488 - DEBUG - Taking top 8 variants by coverage in window 9:43850070-43850071
2012-10-07 17:07:28,635 - DEBUG - Taking top 8 variants by coverage in window 9:43860630-43860631
2012-10-07 17:07:28,935 - DEBUG - Taking top 8 variants by coverage in window 9:43862722-43862723
2012-10-07 17:07:29,022 - DEBUG - Taking top 8 variants by coverage in window 9:43862862-43862866
2012-10-07 17:07:29,133 - DEBUG - Taking top 8 variants by coverage in window 9:43862919-43862920
2012-10-07 17:07:29,674 - DEBUG - Taking top 8 variants by coverage in window 9:43868026-43868027
2012-10-07 17:07:29,756 - DEBUG - Taking top 8 variants by coverage in window 9:43868406-43868407
2012-10-07 17:07:29,811 - DEBUG - Taking top 8 variants by coverage in window 9:43869282-43869283
2012-10-07 17:07:30,161 - DEBUG - Taking top 8 variants by coverage in window 9:43872493-43872496
2012-10-07 17:07:30,670 - DEBUG - Taking top 8 variants by coverage in window 9:43872595-43872596
2012-10-07 17:07:30,874 - DEBUG - Taking top 8 variants by coverage in window 9:43874121-43874124
2012-10-07 17:07:31,099 - DEBUG - Taking top 8 variants by coverage in window 9:43876440-43876441
2012-10-07 17:07:31,437 - DEBUG - Taking top 8 variants by coverage in window 9:43881969-43881970
2012-10-07 17:07:31,766 - DEBUG - Taking top 8 variants by coverage in window 9:43887429-43887430
2012-10-07 17:07:31,789 - DEBUG - Taking top 8 variants by coverage in window 9:43887439-43887443
2012-10-07 17:07:32,118 - DEBUG - Taking top 8 variants by coverage in window 9:43891335-43891337
2012-10-07 17:07:32,330 - DEBUG - Taking top 8 variants by coverage in window 9:43898770-43898778
2012-10-07 17:07:32,607 - DEBUG - Taking top 8 variants by coverage in window 9:43904023-43904024
2012-10-07 17:07:33,798 - DEBUG - Taking top 8 variants by coverage in window 9:43924027-43924031
2012-10-07 17:07:33,919 - DEBUG - Taking top 8 variants by coverage in window 9:43924575-43924576
2012-10-07 17:07:34,340 - DEBUG - Taking top 8 variants by coverage in window 9:43928598-43928599
2012-10-07 17:07:35,783 - DEBUG - Taking top 8 variants by coverage in window 9:43952791-43952792
2012-10-07 17:07:36,044 - DEBUG - Taking top 8 variants by coverage in window 9:43954258-43954259
2012-10-07 17:07:36,102 - DEBUG - Taking top 8 variants by coverage in window 9:43954269-43954270
2012-10-07 17:07:36,205 - DEBUG - Taking top 8 variants by coverage in window 9:43954350-43954351
2012-10-07 17:07:36,997 - DEBUG - Taking top 8 variants by coverage in window 9:43961501-43961513
2012-10-07 17:07:37,038 - DEBUG - Taking top 8 variants by coverage in window 9:43961812-43961825
2012-10-07 17:07:37,672 - DEBUG - Taking top 8 variants by coverage in window 9:43965236-43965237
2012-10-07 17:07:37,698 - DEBUG - Taking top 8 variants by coverage in window 9:43965459-43965460
2012-10-07 17:07:38,231 - DEBUG - Taking top 8 variants by coverage in window 9:43968868-43968882
2012-10-07 17:07:38,310 - DEBUG - Taking top 8 variants by coverage in window 9:43968894-43968895
2012-10-07 17:07:38,529 - DEBUG - Taking top 8 variants by coverage in window 9:43969659-43969660
2012-10-07 17:07:38,832 - DEBUG - Taking top 8 variants by coverage in window 9:43971123-43971135
2012-10-07 17:07:39,287 - DEBUG - Taking top 8 variants by coverage in window 9:43978125-43978126
2012-10-07 17:07:40,058 - DEBUG - Taking top 8 variants by coverage in window 9:43986209-43986210
2012-10-07 17:07:40,114 - DEBUG - Taking top 8 variants by coverage in window 9:43986873-43986874
2012-10-07 17:07:40,130 - DEBUG - Taking top 8 variants by coverage in window 9:43986875-43986876
2012-10-07 17:07:40,899 - DEBUG - Taking top 8 variants by coverage in window 9:43997306-43997307
2012-10-07 17:07:41,006 - DEBUG - Taking top 8 variants by coverage in window 9:43998237-43998241
2012-10-07 17:07:41,037 - DEBUG - Taking top 8 variants by coverage in window 9:43998273-43998281
2012-10-07 17:07:41,179 - DEBUG - Taking top 8 variants by coverage in window 9:43998942-43998943
2012-10-07 17:07:41,230 - DEBUG - Taking top 8 variants by coverage in window 9:43999115-43999116
2012-10-07 17:07:41,243 - DEBUG - Taking top 8 variants by coverage in window 9:43999116-43999117
2012-10-07 17:07:42,461 - DEBUG - Read 104421 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 17:07:42,725 - DEBUG - Read 112286 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 17:07:43,001 - DEBUG - Read 126902 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 17:07:43,325 - DEBUG - Read 134259 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 17:07:43,624 - DEBUG - Read 122017 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 17:07:43,887 - DEBUG - Read 115268 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 17:07:44,165 - DEBUG - Read 123065 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 17:07:44,442 - DEBUG - Read 115442 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 17:07:44,698 - DEBUG - Read 107904 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 17:07:44,948 - DEBUG - Read 102400 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 17:07:45,229 - DEBUG - Read 120617 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 17:07:45,477 - DEBUG - Read 108327 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 17:07:45,736 - DEBUG - Read 109119 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 17:07:46,002 - DEBUG - Read 122168 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 17:07:46,293 - DEBUG - Read 131337 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 17:07:46,530 - DEBUG - Read 97897 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 17:07:46,802 - DEBUG - Read 126244 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 17:07:47,079 - DEBUG - Read 117784 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 17:07:47,326 - DEBUG - Read 109017 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 17:07:47,583 - DEBUG - Read 102653 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 17:07:47,689 - DEBUG - Detected 22774 variants in 104421 reads
2012-10-07 17:07:47,855 - DEBUG - Detected 32132 variants in 112286 reads
2012-10-07 17:07:48,061 - DEBUG - Detected 41416 variants in 126902 reads
2012-10-07 17:07:48,317 - DEBUG - Detected 48148 variants in 134259 reads
2012-10-07 17:07:48,589 - DEBUG - Detected 54542 variants in 122017 reads
2012-10-07 17:07:48,893 - DEBUG - Detected 61643 variants in 115268 reads
2012-10-07 17:07:49,267 - DEBUG - Detected 75400 variants in 123065 reads
2012-10-07 17:07:49,673 - DEBUG - Detected 81307 variants in 115442 reads
2012-10-07 17:07:50,102 - DEBUG - Detected 86662 variants in 107904 reads
2012-10-07 17:07:50,551 - DEBUG - Detected 91108 variants in 102400 reads
2012-10-07 17:07:51,027 - DEBUG - Detected 95869 variants in 120617 reads
2012-10-07 17:07:51,512 - DEBUG - Detected 99487 variants in 108327 reads
2012-10-07 17:07:52,022 - DEBUG - Detected 104103 variants in 109119 reads
2012-10-07 17:07:52,599 - DEBUG - Detected 108898 variants in 122168 reads
2012-10-07 17:07:53,144 - DEBUG - Detected 116429 variants in 131337 reads
2012-10-07 17:07:53,691 - DEBUG - Detected 120338 variants in 97897 reads
2012-10-07 17:07:54,276 - DEBUG - Detected 124017 variants in 126244 reads
2012-10-07 17:07:54,911 - DEBUG - Detected 128182 variants in 117784 reads
2012-10-07 17:07:55,615 - DEBUG - Detected 132686 variants in 109017 reads
2012-10-07 17:07:56,285 - DEBUG - Detected 137215 variants in 102653 reads
2012-10-07 17:07:57,773 - DEBUG - Taking top 8 variants by coverage in window 9:44012098-44012100
2012-10-07 17:07:57,951 - DEBUG - Taking top 8 variants by coverage in window 9:44014379-44014380
2012-10-07 17:07:57,996 - DEBUG - Taking top 8 variants by coverage in window 9:44014383-44014384
2012-10-07 17:07:58,083 - DEBUG - Taking top 8 variants by coverage in window 9:44014568-44014569
2012-10-07 17:07:58,099 - DEBUG - Taking top 8 variants by coverage in window 9:44014577-44014579
2012-10-07 17:07:58,314 - DEBUG - Taking top 8 variants by coverage in window 9:44018194-44018195
2012-10-07 17:07:58,663 - DEBUG - Taking top 8 variants by coverage in window 9:44028824-44028825
2012-10-07 17:07:59,206 - DEBUG - Taking top 8 variants by coverage in window 9:44038208-44038209
2012-10-07 17:07:59,477 - DEBUG - Taking top 8 variants by coverage in window 9:44043374-44043375
2012-10-07 17:08:00,831 - DEBUG - Taking top 8 variants by coverage in window 9:44062345-44062348
2012-10-07 17:08:01,265 - DEBUG - Taking top 8 variants by coverage in window 9:44068083-44068084
2012-10-07 17:08:01,466 - DEBUG - Taking top 8 variants by coverage in window 9:44070147-44070148
2012-10-07 17:08:01,584 - DEBUG - Taking top 8 variants by coverage in window 9:44072612-44072613
2012-10-07 17:08:01,617 - DEBUG - Taking top 8 variants by coverage in window 9:44072628-44072629
2012-10-07 17:08:01,647 - DEBUG - Taking top 8 variants by coverage in window 9:44072642-44072643
2012-10-07 17:08:01,819 - DEBUG - Taking top 8 variants by coverage in window 9:44074437-44074441
2012-10-07 17:08:02,272 - DEBUG - Taking top 8 variants by coverage in window 9:44080226-44080227
2012-10-07 17:08:02,902 - DEBUG - Taking top 8 variants by coverage in window 9:44090279-44090283
2012-10-07 17:08:03,026 - DEBUG - Taking top 8 variants by coverage in window 9:44090863-44090865
2012-10-07 17:08:03,164 - DEBUG - Taking top 8 variants by coverage in window 9:44093517-44093518
2012-10-07 17:08:03,794 - DEBUG - Taking top 8 variants by coverage in window 9:44100707-44100708
2012-10-07 17:08:04,581 - DEBUG - Taking top 8 variants by coverage in window 9:44116339-44116343
2012-10-07 17:08:05,207 - DEBUG - Taking top 8 variants by coverage in window 9:44125784-44125792
2012-10-07 17:08:05,660 - DEBUG - Taking top 8 variants by coverage in window 9:44133500-44133502
2012-10-07 17:08:06,658 - DEBUG - Taking top 8 variants by coverage in window 9:44147219-44147220
2012-10-07 17:08:06,731 - DEBUG - Taking top 8 variants by coverage in window 9:44148057-44148061
2012-10-07 17:08:06,916 - DEBUG - Taking top 8 variants by coverage in window 9:44149952-44149953
2012-10-07 17:08:06,938 - DEBUG - Taking top 8 variants by coverage in window 9:44149956-44149957
2012-10-07 17:08:07,133 - DEBUG - Taking top 8 variants by coverage in window 9:44150640-44150641
2012-10-07 17:08:07,289 - DEBUG - Taking top 8 variants by coverage in window 9:44152609-44152611
2012-10-07 17:08:07,524 - DEBUG - Taking top 8 variants by coverage in window 9:44154834-44154836
2012-10-07 17:08:07,790 - DEBUG - Taking top 8 variants by coverage in window 9:44157981-44157982
2012-10-07 17:08:08,500 - DEBUG - Taking top 8 variants by coverage in window 9:44166584-44166588
2012-10-07 17:08:08,676 - DEBUG - Taking top 8 variants by coverage in window 9:44169212-44169213
2012-10-07 17:08:08,887 - DEBUG - Taking top 8 variants by coverage in window 9:44173300-44173308
2012-10-07 17:08:08,949 - DEBUG - Taking top 8 variants by coverage in window 9:44180664-44180665
2012-10-07 17:08:11,229 - DEBUG - Taking top 8 variants by coverage in window 9:44220180-44220181
2012-10-07 17:08:11,277 - DEBUG - Taking top 8 variants by coverage in window 9:44220208-44220209
2012-10-07 17:08:11,491 - DEBUG - Taking top 8 variants by coverage in window 9:44224206-44224207
2012-10-07 17:08:11,914 - DEBUG - Taking top 8 variants by coverage in window 9:44229020-44229031
2012-10-07 17:08:13,103 - DEBUG - Taking top 8 variants by coverage in window 9:44239623-44239624
2012-10-07 17:08:13,130 - DEBUG - Taking top 8 variants by coverage in window 9:44239800-44239803
2012-10-07 17:08:13,225 - DEBUG - Taking top 8 variants by coverage in window 9:44240639-44240640
2012-10-07 17:08:13,346 - DEBUG - Taking top 8 variants by coverage in window 9:44241248-44241252
2012-10-07 17:08:13,430 - DEBUG - Taking top 8 variants by coverage in window 9:44241317-44241318
2012-10-07 17:08:13,779 - DEBUG - Taking top 8 variants by coverage in window 9:44246344-44246345
2012-10-07 17:08:14,186 - DEBUG - Taking top 8 variants by coverage in window 9:44252247-44252248
2012-10-07 17:08:14,238 - DEBUG - Taking top 8 variants by coverage in window 9:44252577-44252578
2012-10-07 17:08:15,322 - DEBUG - Taking top 8 variants by coverage in window 9:44264722-44264725
2012-10-07 17:08:15,712 - DEBUG - Taking top 8 variants by coverage in window 9:44264987-44264988
2012-10-07 17:08:15,975 - DEBUG - Taking top 8 variants by coverage in window 9:44265029-44265032
2012-10-07 17:08:16,156 - DEBUG - Taking top 8 variants by coverage in window 9:44265207-44265208
2012-10-07 17:08:16,194 - DEBUG - Taking top 8 variants by coverage in window 9:44265297-44265314
2012-10-07 17:08:16,250 - DEBUG - Taking top 8 variants by coverage in window 9:44265323-44265324
2012-10-07 17:08:16,412 - DEBUG - Taking top 8 variants by coverage in window 9:44266653-44266664
2012-10-07 17:08:16,863 - DEBUG - Taking top 8 variants by coverage in window 9:44270895-44270896
2012-10-07 17:08:17,010 - DEBUG - Taking top 8 variants by coverage in window 9:44271543-44271544
2012-10-07 17:08:17,041 - DEBUG - Taking top 8 variants by coverage in window 9:44272108-44272120
2012-10-07 17:08:17,071 - DEBUG - Taking top 8 variants by coverage in window 9:44272242-44272243
2012-10-07 17:08:17,098 - DEBUG - Taking top 8 variants by coverage in window 9:44273619-44273620
2012-10-07 17:08:17,815 - DEBUG - Taking top 8 variants by coverage in window 9:44285177-44285178
2012-10-07 17:08:17,982 - DEBUG - Taking top 8 variants by coverage in window 9:44287690-44287691
2012-10-07 17:08:18,630 - DEBUG - Taking top 8 variants by coverage in window 9:44304288-44304289
2012-10-07 17:08:18,814 - DEBUG - Taking top 8 variants by coverage in window 9:44312753-44312754
2012-10-07 17:08:19,303 - DEBUG - Taking top 8 variants by coverage in window 9:44324881-44324882
2012-10-07 17:08:20,386 - DEBUG - Taking top 8 variants by coverage in window 9:44337070-44337078
2012-10-07 17:08:20,466 - DEBUG - Taking top 8 variants by coverage in window 9:44337125-44337126
2012-10-07 17:08:20,745 - DEBUG - Taking top 8 variants by coverage in window 9:44338178-44338182
2012-10-07 17:08:22,066 - DEBUG - Taking top 8 variants by coverage in window 9:44347364-44347365
2012-10-07 17:08:22,203 - DEBUG - Taking top 8 variants by coverage in window 9:44348240-44348241
2012-10-07 17:08:22,915 - DEBUG - Taking top 8 variants by coverage in window 9:44354414-44354415
2012-10-07 17:08:23,070 - DEBUG - Taking top 8 variants by coverage in window 9:44355225-44355226
2012-10-07 17:08:23,158 - DEBUG - Taking top 8 variants by coverage in window 9:44355336-44355338
2012-10-07 17:08:25,159 - DEBUG - Taking top 8 variants by coverage in window 9:44375665-44375667
2012-10-07 17:08:25,245 - DEBUG - Taking top 8 variants by coverage in window 9:44376762-44376763
2012-10-07 17:08:26,225 - DEBUG - Taking top 8 variants by coverage in window 9:44387999-44388000
2012-10-07 17:08:26,679 - DEBUG - Taking top 8 variants by coverage in window 9:44395450-44395452
2012-10-07 17:08:26,812 - DEBUG - Taking top 8 variants by coverage in window 9:44397498-44397500
2012-10-07 17:08:27,007 - DEBUG - Taking top 8 variants by coverage in window 9:44399761-44399762
2012-10-07 17:08:27,264 - DEBUG - Taking top 8 variants by coverage in window 9:44403988-44404004
2012-10-07 17:08:27,683 - DEBUG - Taking top 8 variants by coverage in window 9:44408530-44408531
2012-10-07 17:08:28,355 - DEBUG - Taking top 8 variants by coverage in window 9:44419456-44419457
2012-10-07 17:08:28,511 - DEBUG - Taking top 8 variants by coverage in window 9:44422753-44422754
2012-10-07 17:08:28,854 - DEBUG - Taking top 8 variants by coverage in window 9:44428240-44428241
2012-10-07 17:08:29,337 - DEBUG - Taking top 8 variants by coverage in window 9:44437055-44437059
2012-10-07 17:08:29,962 - DEBUG - Taking top 8 variants by coverage in window 9:44446370-44446371
2012-10-07 17:08:29,975 - DEBUG - Taking top 8 variants by coverage in window 9:44446426-44446434
2012-10-07 17:08:30,027 - DEBUG - Taking top 8 variants by coverage in window 9:44446460-44446486
2012-10-07 17:08:30,462 - DEBUG - Taking top 8 variants by coverage in window 9:44450048-44450049
2012-10-07 17:08:30,480 - DEBUG - Taking top 8 variants by coverage in window 9:44450053-44450055
2012-10-07 17:08:30,748 - DEBUG - Taking top 8 variants by coverage in window 9:44451601-44451605
2012-10-07 17:08:30,780 - DEBUG - Taking top 8 variants by coverage in window 9:44451628-44451638
2012-10-07 17:08:30,806 - DEBUG - Taking top 8 variants by coverage in window 9:44451642-44451646
2012-10-07 17:08:31,171 - DEBUG - Taking top 8 variants by coverage in window 9:44454882-44454885
2012-10-07 17:08:31,314 - DEBUG - Taking top 8 variants by coverage in window 9:44455103-44455104
2012-10-07 17:08:34,502 - DEBUG - Taking top 8 variants by coverage in window 9:44484453-44484454
2012-10-07 17:08:34,528 - DEBUG - Taking top 8 variants by coverage in window 9:44484519-44484520
2012-10-07 17:08:34,629 - DEBUG - Taking top 8 variants by coverage in window 9:44485767-44485768
2012-10-07 17:08:34,723 - DEBUG - Taking top 8 variants by coverage in window 9:44485841-44485842
2012-10-07 17:08:34,887 - DEBUG - Taking top 8 variants by coverage in window 9:44487941-44487942
2012-10-07 17:08:34,958 - DEBUG - Taking top 8 variants by coverage in window 9:44488147-44488152
2012-10-07 17:08:36,745 - DEBUG - Taking top 8 variants by coverage in window 9:44503955-44503956
2012-10-07 17:08:36,772 - DEBUG - Taking top 8 variants by coverage in window 9:44503961-44503962
2012-10-07 17:08:37,841 - DEBUG - Taking top 8 variants by coverage in window 9:44514343-44514344
2012-10-07 17:08:38,153 - DEBUG - Taking top 8 variants by coverage in window 9:44517936-44517937
2012-10-07 17:08:38,867 - DEBUG - Taking top 8 variants by coverage in window 9:44532143-44532144
2012-10-07 17:08:39,376 - DEBUG - Taking top 8 variants by coverage in window 9:44538166-44538176
2012-10-07 17:08:39,625 - DEBUG - Taking top 8 variants by coverage in window 9:44540613-44540614
2012-10-07 17:08:39,998 - DEBUG - Taking top 8 variants by coverage in window 9:44546912-44546913
2012-10-07 17:08:40,982 - DEBUG - Taking top 8 variants by coverage in window 9:44564868-44564869
2012-10-07 17:08:41,021 - DEBUG - Taking top 8 variants by coverage in window 9:44564906-44564907
2012-10-07 17:08:41,035 - DEBUG - Taking top 8 variants by coverage in window 9:44564909-44564910
2012-10-07 17:08:41,499 - DEBUG - Taking top 8 variants by coverage in window 9:44573525-44573527
2012-10-07 17:08:41,646 - DEBUG - Taking top 8 variants by coverage in window 9:44575957-44575958
2012-10-07 17:08:41,676 - DEBUG - Taking top 8 variants by coverage in window 9:44576083-44576085
2012-10-07 17:08:41,772 - DEBUG - Taking top 8 variants by coverage in window 9:44577658-44577682
2012-10-07 17:08:41,786 - DEBUG - Taking top 8 variants by coverage in window 9:44577702-44577705
2012-10-07 17:08:42,400 - DEBUG - Taking top 8 variants by coverage in window 9:44585923-44585924
2012-10-07 17:08:42,515 - DEBUG - Taking top 8 variants by coverage in window 9:44587577-44587578
2012-10-07 17:08:44,047 - DEBUG - Taking top 8 variants by coverage in window 9:44620125-44620134
2012-10-07 17:08:44,524 - DEBUG - Taking top 8 variants by coverage in window 9:44632025-44632027
2012-10-07 17:08:45,353 - DEBUG - Taking top 8 variants by coverage in window 9:44646745-44646757
2012-10-07 17:08:47,183 - DEBUG - Taking top 8 variants by coverage in window 9:44679681-44679690
2012-10-07 17:08:47,350 - DEBUG - Taking top 8 variants by coverage in window 9:44684017-44684035
2012-10-07 17:08:47,529 - DEBUG - Taking top 8 variants by coverage in window 9:44686750-44686755
2012-10-07 17:08:47,720 - DEBUG - Taking top 8 variants by coverage in window 9:44692257-44692258
2012-10-07 17:08:48,422 - DEBUG - Taking top 8 variants by coverage in window 9:44706410-44706412
2012-10-07 17:08:48,483 - DEBUG - Taking top 8 variants by coverage in window 9:44707130-44707131
2012-10-07 17:08:48,596 - DEBUG - Taking top 8 variants by coverage in window 9:44709096-44709097
2012-10-07 17:08:48,993 - DEBUG - Taking top 8 variants by coverage in window 9:44712275-44712276
2012-10-07 17:08:50,988 - DEBUG - Taking top 8 variants by coverage in window 9:44746791-44746792
2012-10-07 17:08:51,010 - DEBUG - Taking top 8 variants by coverage in window 9:44746996-44746997
2012-10-07 17:08:51,336 - DEBUG - Taking top 8 variants by coverage in window 9:44757133-44757134
2012-10-07 17:08:51,468 - DEBUG - Taking top 8 variants by coverage in window 9:44758602-44758605
2012-10-07 17:08:52,954 - DEBUG - Taking top 8 variants by coverage in window 9:44781167-44781170
2012-10-07 17:08:53,428 - DEBUG - Taking top 8 variants by coverage in window 9:44787857-44787859
2012-10-07 17:08:54,556 - DEBUG - Taking top 8 variants by coverage in window 9:44799606-44799608
2012-10-07 17:08:54,579 - DEBUG - Taking top 8 variants by coverage in window 9:44799798-44799799
2012-10-07 17:08:54,939 - DEBUG - Taking top 8 variants by coverage in window 9:44803171-44803172
2012-10-07 17:08:55,479 - DEBUG - Taking top 8 variants by coverage in window 9:44806483-44806484
2012-10-07 17:08:55,839 - DEBUG - Taking top 8 variants by coverage in window 9:44811662-44811663
2012-10-07 17:08:55,858 - DEBUG - Taking top 8 variants by coverage in window 9:44811671-44811672
2012-10-07 17:08:55,887 - DEBUG - Taking top 8 variants by coverage in window 9:44811692-44811693
2012-10-07 17:08:55,906 - DEBUG - Taking top 8 variants by coverage in window 9:44811695-44811696
2012-10-07 17:08:55,939 - DEBUG - Taking top 8 variants by coverage in window 9:44811710-44811712
2012-10-07 17:08:56,170 - DEBUG - Taking top 8 variants by coverage in window 9:44814332-44814340
2012-10-07 17:08:57,118 - DEBUG - Taking top 8 variants by coverage in window 9:44816942-44816943
2012-10-07 17:08:57,179 - DEBUG - Taking top 8 variants by coverage in window 9:44817285-44817286
2012-10-07 17:08:57,760 - DEBUG - Taking top 8 variants by coverage in window 9:44823131-44823132
2012-10-07 17:08:58,103 - DEBUG - Taking top 8 variants by coverage in window 9:44823632-44823633
2012-10-07 17:08:58,299 - DEBUG - Taking top 8 variants by coverage in window 9:44825064-44825065
2012-10-07 17:08:58,328 - DEBUG - Taking top 8 variants by coverage in window 9:44825066-44825067
2012-10-07 17:08:59,354 - DEBUG - Taking top 8 variants by coverage in window 9:44833140-44833141
2012-10-07 17:08:59,448 - DEBUG - Taking top 8 variants by coverage in window 9:44834270-44834272
2012-10-07 17:08:59,942 - DEBUG - Taking top 8 variants by coverage in window 9:44838792-44838793
2012-10-07 17:08:59,962 - DEBUG - Taking top 8 variants by coverage in window 9:44838795-44838796
2012-10-07 17:09:00,474 - DEBUG - Taking top 8 variants by coverage in window 9:44842599-44842606
2012-10-07 17:09:00,543 - DEBUG - Taking top 8 variants by coverage in window 9:44842647-44842648
2012-10-07 17:09:01,038 - DEBUG - Taking top 8 variants by coverage in window 9:44847111-44847130
2012-10-07 17:09:01,879 - DEBUG - Taking top 8 variants by coverage in window 9:44858157-44858167
2012-10-07 17:09:02,401 - DEBUG - Taking top 8 variants by coverage in window 9:44858187-44858191
2012-10-07 17:09:02,485 - DEBUG - Taking top 8 variants by coverage in window 9:44858207-44858213
2012-10-07 17:09:02,522 - DEBUG - Taking top 8 variants by coverage in window 9:44858217-44858225
2012-10-07 17:09:03,464 - DEBUG - Taking top 8 variants by coverage in window 9:44864195-44864196
2012-10-07 17:09:04,081 - DEBUG - Taking top 8 variants by coverage in window 9:44873917-44873919
2012-10-07 17:09:04,533 - DEBUG - Taking top 8 variants by coverage in window 9:44878041-44878042
2012-10-07 17:09:04,960 - DEBUG - Taking top 8 variants by coverage in window 9:44881782-44881783
2012-10-07 17:09:05,553 - DEBUG - Taking top 8 variants by coverage in window 9:44886748-44886749
2012-10-07 17:09:05,693 - DEBUG - Taking top 8 variants by coverage in window 9:44886989-44886990
2012-10-07 17:09:05,909 - DEBUG - Taking top 8 variants by coverage in window 9:44888902-44888903
2012-10-07 17:09:06,363 - DEBUG - Taking top 8 variants by coverage in window 9:44893499-44893500
2012-10-07 17:09:07,533 - DEBUG - Taking top 8 variants by coverage in window 9:44903645-44903649
2012-10-07 17:09:07,724 - DEBUG - Taking top 8 variants by coverage in window 9:44905237-44905238
2012-10-07 17:09:08,033 - DEBUG - Taking top 8 variants by coverage in window 9:44907395-44907396
2012-10-07 17:09:08,068 - DEBUG - Taking top 8 variants by coverage in window 9:44907398-44907399
2012-10-07 17:09:08,383 - DEBUG - Taking top 8 variants by coverage in window 9:44909390-44909394
2012-10-07 17:09:08,817 - DEBUG - Taking top 8 variants by coverage in window 9:44913314-44913316
2012-10-07 17:09:09,566 - DEBUG - Taking top 8 variants by coverage in window 9:44921000-44921005
2012-10-07 17:09:09,853 - DEBUG - Taking top 8 variants by coverage in window 9:44925180-44925181
2012-10-07 17:09:10,625 - DEBUG - Taking top 8 variants by coverage in window 9:44941235-44941236
2012-10-07 17:09:11,881 - DEBUG - Taking top 8 variants by coverage in window 9:44971069-44971070
2012-10-07 17:09:13,920 - DEBUG - Taking top 8 variants by coverage in window 9:44991188-44991189
2012-10-07 17:09:14,438 - DEBUG - Taking top 8 variants by coverage in window 9:44998618-44998619
2012-10-07 17:09:15,313 - INFO - Processing region 9:45000000-46000000
2012-10-07 17:09:15,566 - DEBUG - Read 110240 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 17:09:15,844 - DEBUG - Read 119608 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 17:09:16,139 - DEBUG - Read 136947 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 17:09:16,476 - DEBUG - Read 141026 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 17:09:16,792 - DEBUG - Read 129857 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 17:09:17,073 - DEBUG - Read 124330 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 17:09:17,360 - DEBUG - Read 129713 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 17:09:17,652 - DEBUG - Read 122407 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 17:09:17,931 - DEBUG - Read 116449 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 17:09:18,200 - DEBUG - Read 111936 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 17:09:18,494 - DEBUG - Read 127135 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 17:09:18,761 - DEBUG - Read 117682 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 17:09:19,045 - DEBUG - Read 120241 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 17:09:19,396 - DEBUG - Read 129812 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 17:09:19,703 - DEBUG - Read 140989 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 17:09:19,959 - DEBUG - Read 108476 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 17:09:20,244 - DEBUG - Read 133023 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 17:09:20,579 - DEBUG - Read 125189 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 17:09:20,841 - DEBUG - Read 117078 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 17:09:21,106 - DEBUG - Read 108228 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 17:09:21,222 - DEBUG - Detected 24673 variants in 110240 reads
2012-10-07 17:09:21,413 - DEBUG - Detected 34763 variants in 119608 reads
2012-10-07 17:09:21,662 - DEBUG - Detected 43690 variants in 136947 reads
2012-10-07 17:09:21,973 - DEBUG - Detected 52177 variants in 141026 reads
2012-10-07 17:09:22,291 - DEBUG - Detected 59190 variants in 129857 reads
2012-10-07 17:09:22,640 - DEBUG - Detected 65860 variants in 124330 reads
2012-10-07 17:09:23,035 - DEBUG - Detected 80019 variants in 129713 reads
2012-10-07 17:09:23,468 - DEBUG - Detected 86327 variants in 122407 reads
2012-10-07 17:09:23,946 - DEBUG - Detected 92477 variants in 116449 reads
2012-10-07 17:09:24,483 - DEBUG - Detected 97390 variants in 111936 reads
2012-10-07 17:09:25,019 - DEBUG - Detected 103399 variants in 127135 reads
2012-10-07 17:09:25,573 - DEBUG - Detected 107873 variants in 117682 reads
2012-10-07 17:09:26,152 - DEBUG - Detected 112558 variants in 120241 reads
2012-10-07 17:09:26,762 - DEBUG - Detected 117163 variants in 129812 reads
2012-10-07 17:09:27,452 - DEBUG - Detected 125850 variants in 140989 reads
2012-10-07 17:09:28,103 - DEBUG - Detected 130203 variants in 108476 reads
2012-10-07 17:09:28,796 - DEBUG - Detected 134098 variants in 133023 reads
2012-10-07 17:09:29,498 - DEBUG - Detected 138350 variants in 125189 reads
2012-10-07 17:09:30,217 - DEBUG - Detected 142977 variants in 117078 reads
2012-10-07 17:09:31,012 - DEBUG - Detected 147439 variants in 108228 reads
2012-10-07 17:09:33,260 - DEBUG - Taking top 8 variants by coverage in window 9:45014150-45014151
2012-10-07 17:09:33,663 - DEBUG - Taking top 8 variants by coverage in window 9:45016744-45016745
2012-10-07 17:09:34,132 - DEBUG - Taking top 8 variants by coverage in window 9:45022413-45022414
2012-10-07 17:09:34,416 - DEBUG - Taking top 8 variants by coverage in window 9:45024909-45024910
2012-10-07 17:09:34,666 - DEBUG - Taking top 8 variants by coverage in window 9:45026973-45026974
2012-10-07 17:09:35,182 - DEBUG - Taking top 8 variants by coverage in window 9:45031832-45031833
2012-10-07 17:09:35,862 - DEBUG - Taking top 8 variants by coverage in window 9:45037940-45037941
2012-10-07 17:09:36,108 - DEBUG - Taking top 8 variants by coverage in window 9:45039878-45039879
2012-10-07 17:09:36,170 - DEBUG - Taking top 8 variants by coverage in window 9:45039932-45039933
2012-10-07 17:09:36,370 - DEBUG - Taking top 8 variants by coverage in window 9:45040540-45040541
2012-10-07 17:09:36,897 - DEBUG - Taking top 8 variants by coverage in window 9:45045525-45045526
2012-10-07 17:09:37,138 - DEBUG - Taking top 8 variants by coverage in window 9:45048180-45048182
2012-10-07 17:09:37,461 - DEBUG - Taking top 8 variants by coverage in window 9:45050804-45050814
2012-10-07 17:09:37,575 - DEBUG - Taking top 8 variants by coverage in window 9:45051534-45051535
2012-10-07 17:09:39,058 - DEBUG - Taking top 8 variants by coverage in window 9:45070969-45070971
2012-10-07 17:09:40,857 - DEBUG - Taking top 8 variants by coverage in window 9:45092562-45092565
2012-10-07 17:09:41,247 - DEBUG - Taking top 8 variants by coverage in window 9:45095364-45095365
2012-10-07 17:09:41,354 - DEBUG - Taking top 8 variants by coverage in window 9:45096448-45096449
2012-10-07 17:09:41,577 - DEBUG - Taking top 8 variants by coverage in window 9:45100128-45100129
2012-10-07 17:09:41,808 - DEBUG - Taking top 8 variants by coverage in window 9:45102944-45102945
2012-10-07 17:09:42,565 - DEBUG - Taking top 8 variants by coverage in window 9:45111822-45111832
2012-10-07 17:09:42,750 - DEBUG - Taking top 8 variants by coverage in window 9:45113213-45113214
2012-10-07 17:09:42,930 - DEBUG - Taking top 8 variants by coverage in window 9:45115615-45115616
2012-10-07 17:09:43,176 - DEBUG - Taking top 8 variants by coverage in window 9:45119243-45119244
2012-10-07 17:09:43,218 - DEBUG - Taking top 8 variants by coverage in window 9:45119247-45119248
2012-10-07 17:09:43,321 - DEBUG - Taking top 8 variants by coverage in window 9:45119319-45119320
2012-10-07 17:09:43,348 - DEBUG - Taking top 8 variants by coverage in window 9:45119323-45119324
2012-10-07 17:09:43,449 - DEBUG - Taking top 8 variants by coverage in window 9:45120402-45120403
2012-10-07 17:09:43,507 - DEBUG - Taking top 8 variants by coverage in window 9:45120855-45120857
2012-10-07 17:09:43,610 - DEBUG - Taking top 8 variants by coverage in window 9:45121061-45121071
2012-10-07 17:09:45,220 - DEBUG - Taking top 8 variants by coverage in window 9:45125106-45125110
2012-10-07 17:09:45,262 - DEBUG - Taking top 8 variants by coverage in window 9:45125132-45125133
2012-10-07 17:09:47,246 - DEBUG - Taking top 8 variants by coverage in window 9:45146104-45146105
2012-10-07 17:09:47,342 - DEBUG - Taking top 8 variants by coverage in window 9:45147943-45147957
2012-10-07 17:09:47,470 - DEBUG - Taking top 8 variants by coverage in window 9:45150522-45150523
2012-10-07 17:09:47,631 - DEBUG - Taking top 8 variants by coverage in window 9:45151363-45151378
2012-10-07 17:09:47,786 - DEBUG - Taking top 8 variants by coverage in window 9:45151720-45151722
2012-10-07 17:09:47,804 - DEBUG - Taking top 8 variants by coverage in window 9:45151727-45151728
2012-10-07 17:09:48,505 - DEBUG - Taking top 8 variants by coverage in window 9:45165173-45165174
2012-10-07 17:09:48,599 - DEBUG - Taking top 8 variants by coverage in window 9:45165691-45165692
2012-10-07 17:09:48,880 - DEBUG - Taking top 8 variants by coverage in window 9:45169239-45169240
2012-10-07 17:09:49,093 - DEBUG - Taking top 8 variants by coverage in window 9:45170904-45170905
2012-10-07 17:09:49,898 - DEBUG - Taking top 8 variants by coverage in window 9:45180060-45180061
2012-10-07 17:09:49,921 - DEBUG - Taking top 8 variants by coverage in window 9:45180076-45180079
2012-10-07 17:09:50,023 - DEBUG - Taking top 8 variants by coverage in window 9:45180091-45180092
2012-10-07 17:09:50,098 - DEBUG - Taking top 8 variants by coverage in window 9:45180210-45180211
2012-10-07 17:09:50,153 - DEBUG - Taking top 8 variants by coverage in window 9:45180216-45180217
2012-10-07 17:09:50,367 - DEBUG - Taking top 8 variants by coverage in window 9:45181290-45181291
2012-10-07 17:09:50,387 - DEBUG - Taking top 8 variants by coverage in window 9:45181295-45181299
2012-10-07 17:09:50,624 - DEBUG - Taking top 8 variants by coverage in window 9:45183662-45183663
2012-10-07 17:09:50,967 - DEBUG - Taking top 8 variants by coverage in window 9:45187829-45187836
2012-10-07 17:09:51,057 - DEBUG - Taking top 8 variants by coverage in window 9:45187917-45187919
2012-10-07 17:09:51,376 - DEBUG - Taking top 8 variants by coverage in window 9:45188959-45188960
2012-10-07 17:09:51,389 - DEBUG - Taking top 8 variants by coverage in window 9:45188960-45188961
2012-10-07 17:09:51,657 - DEBUG - Taking top 8 variants by coverage in window 9:45192348-45192354
2012-10-07 17:09:52,555 - DEBUG - Taking top 8 variants by coverage in window 9:45201139-45201141
2012-10-07 17:09:52,957 - DEBUG - Taking top 8 variants by coverage in window 9:45201582-45201583
2012-10-07 17:09:53,106 - DEBUG - Taking top 8 variants by coverage in window 9:45202862-45202863
2012-10-07 17:09:53,624 - DEBUG - Taking top 8 variants by coverage in window 9:45211517-45211522
2012-10-07 17:09:53,769 - DEBUG - Taking top 8 variants by coverage in window 9:45212822-45212823
2012-10-07 17:09:54,090 - DEBUG - Taking top 8 variants by coverage in window 9:45215253-45215254
2012-10-07 17:09:54,388 - DEBUG - Taking top 8 variants by coverage in window 9:45220939-45220940
2012-10-07 17:09:56,349 - DEBUG - Taking top 8 variants by coverage in window 9:45262611-45262612
2012-10-07 17:09:57,098 - DEBUG - Taking top 8 variants by coverage in window 9:45274553-45274554
2012-10-07 17:09:57,109 - DEBUG - Taking top 8 variants by coverage in window 9:45274555-45274556
2012-10-07 17:09:57,273 - DEBUG - Taking top 8 variants by coverage in window 9:45275598-45275599
2012-10-07 17:09:57,299 - DEBUG - Taking top 8 variants by coverage in window 9:45275631-45275632
2012-10-07 17:09:57,310 - DEBUG - Taking top 8 variants by coverage in window 9:45275632-45275633
2012-10-07 17:09:58,112 - DEBUG - Taking top 8 variants by coverage in window 9:45288321-45288322
2012-10-07 17:09:58,736 - DEBUG - Taking top 8 variants by coverage in window 9:45296738-45296740
2012-10-07 17:09:58,815 - DEBUG - Taking top 8 variants by coverage in window 9:45297440-45297441
2012-10-07 17:09:58,844 - DEBUG - Taking top 8 variants by coverage in window 9:45297469-45297470
2012-10-07 17:10:00,190 - DEBUG - Taking top 8 variants by coverage in window 9:45311887-45311888
2012-10-07 17:10:00,553 - DEBUG - Taking top 8 variants by coverage in window 9:45314476-45314484
2012-10-07 17:10:01,571 - DEBUG - Taking top 8 variants by coverage in window 9:45323221-45323222
2012-10-07 17:10:01,931 - DEBUG - Taking top 8 variants by coverage in window 9:45325433-45325434
2012-10-07 17:10:01,986 - DEBUG - Taking top 8 variants by coverage in window 9:45325441-45325445
2012-10-07 17:10:02,018 - DEBUG - Taking top 8 variants by coverage in window 9:45325449-45325450
2012-10-07 17:10:02,282 - DEBUG - Taking top 8 variants by coverage in window 9:45327060-45327064
2012-10-07 17:10:03,034 - DEBUG - Taking top 8 variants by coverage in window 9:45334578-45334579
2012-10-07 17:10:03,071 - DEBUG - Taking top 8 variants by coverage in window 9:45334619-45334620
2012-10-07 17:10:03,462 - DEBUG - Taking top 8 variants by coverage in window 9:45337648-45337649
2012-10-07 17:10:03,658 - DEBUG - Taking top 8 variants by coverage in window 9:45339465-45339466
2012-10-07 17:10:03,795 - DEBUG - Taking top 8 variants by coverage in window 9:45339701-45339702
2012-10-07 17:10:04,351 - DEBUG - Taking top 8 variants by coverage in window 9:45340300-45340301
2012-10-07 17:10:05,477 - DEBUG - Taking top 8 variants by coverage in window 9:45352888-45352889
2012-10-07 17:10:05,502 - DEBUG - Taking top 8 variants by coverage in window 9:45352908-45352909
2012-10-07 17:10:06,130 - DEBUG - Taking top 8 variants by coverage in window 9:45358100-45358101
2012-10-07 17:10:06,963 - DEBUG - Taking top 8 variants by coverage in window 9:45367476-45367477
2012-10-07 17:10:07,137 - DEBUG - Taking top 8 variants by coverage in window 9:45368165-45368166
2012-10-07 17:10:07,243 - DEBUG - Taking top 8 variants by coverage in window 9:45368942-45368943
2012-10-07 17:10:07,358 - DEBUG - Taking top 8 variants by coverage in window 9:45369478-45369479
2012-10-07 17:10:08,304 - DEBUG - Taking top 8 variants by coverage in window 9:45378108-45378109
2012-10-07 17:10:08,544 - DEBUG - Taking top 8 variants by coverage in window 9:45381820-45381822
2012-10-07 17:10:09,807 - DEBUG - Taking top 8 variants by coverage in window 9:45398700-45398701
2012-10-07 17:10:09,830 - DEBUG - Taking top 8 variants by coverage in window 9:45398710-45398711
2012-10-07 17:10:10,122 - DEBUG - Taking top 8 variants by coverage in window 9:45402698-45402699
2012-10-07 17:10:10,545 - DEBUG - Taking top 8 variants by coverage in window 9:45404127-45404130
2012-10-07 17:10:10,901 - DEBUG - Taking top 8 variants by coverage in window 9:45406292-45406293
2012-10-07 17:10:11,478 - DEBUG - Taking top 8 variants by coverage in window 9:45411397-45411398
2012-10-07 17:10:11,485 - DEBUG - Taking top 8 variants by coverage in window 9:45411408-45411410
2012-10-07 17:10:12,178 - DEBUG - Taking top 8 variants by coverage in window 9:45418394-45418412
2012-10-07 17:10:12,251 - DEBUG - Taking top 8 variants by coverage in window 9:45418496-45418498
2012-10-07 17:10:12,646 - DEBUG - Taking top 8 variants by coverage in window 9:45423000-45423012
2012-10-07 17:10:12,662 - DEBUG - Taking top 8 variants by coverage in window 9:45423078-45423113
2012-10-07 17:10:13,060 - DEBUG - Taking top 8 variants by coverage in window 9:45429355-45429356
2012-10-07 17:10:13,436 - DEBUG - Taking top 8 variants by coverage in window 9:45433329-45433330
2012-10-07 17:10:14,738 - DEBUG - Taking top 8 variants by coverage in window 9:45455645-45455646
2012-10-07 17:10:14,980 - DEBUG - Taking top 8 variants by coverage in window 9:45459224-45459225
2012-10-07 17:10:15,012 - DEBUG - Taking top 8 variants by coverage in window 9:45459252-45459253
2012-10-07 17:10:15,385 - DEBUG - Taking top 8 variants by coverage in window 9:45463840-45463841
2012-10-07 17:10:15,414 - DEBUG - Taking top 8 variants by coverage in window 9:45464058-45464062
2012-10-07 17:10:17,417 - DEBUG - Taking top 8 variants by coverage in window 9:45485299-45485300
2012-10-07 17:10:17,702 - DEBUG - Taking top 8 variants by coverage in window 9:45489796-45489797
2012-10-07 17:10:18,208 - DEBUG - Taking top 8 variants by coverage in window 9:45495360-45495361
2012-10-07 17:10:18,225 - DEBUG - Taking top 8 variants by coverage in window 9:45495379-45495380
2012-10-07 17:10:18,444 - DEBUG - Taking top 8 variants by coverage in window 9:45499806-45499807
2012-10-07 17:10:18,721 - DEBUG - Taking top 8 variants by coverage in window 9:45503981-45503982
2012-10-07 17:10:18,730 - DEBUG - Taking top 8 variants by coverage in window 9:45504003-45504004
2012-10-07 17:10:18,998 - DEBUG - Taking top 8 variants by coverage in window 9:45509244-45509261
2012-10-07 17:10:19,566 - DEBUG - Taking top 8 variants by coverage in window 9:45516277-45516278
2012-10-07 17:10:19,924 - DEBUG - Taking top 8 variants by coverage in window 9:45518835-45518839
2012-10-07 17:10:20,118 - DEBUG - Taking top 8 variants by coverage in window 9:45519065-45519070
2012-10-07 17:10:20,217 - DEBUG - Taking top 8 variants by coverage in window 9:45519101-45519109
2012-10-07 17:10:20,535 - DEBUG - Taking top 8 variants by coverage in window 9:45519215-45519224
2012-10-07 17:10:20,702 - DEBUG - Taking top 8 variants by coverage in window 9:45519279-45519283
2012-10-07 17:10:20,735 - DEBUG - Taking top 8 variants by coverage in window 9:45519289-45519295
2012-10-07 17:10:21,770 - DEBUG - Taking top 8 variants by coverage in window 9:45520638-45520639
2012-10-07 17:10:21,789 - DEBUG - Taking top 8 variants by coverage in window 9:45520651-45520652
2012-10-07 17:10:22,723 - DEBUG - Taking top 8 variants by coverage in window 9:45526453-45526454
2012-10-07 17:10:22,954 - DEBUG - Taking top 8 variants by coverage in window 9:45527189-45527190
2012-10-07 17:10:24,452 - DEBUG - Taking top 8 variants by coverage in window 9:45538866-45538867
2012-10-07 17:10:24,544 - DEBUG - Taking top 8 variants by coverage in window 9:45540491-45540507
2012-10-07 17:10:24,810 - DEBUG - Taking top 8 variants by coverage in window 9:45541989-45542003
2012-10-07 17:10:25,192 - DEBUG - Taking top 8 variants by coverage in window 9:45545090-45545092
2012-10-07 17:10:25,300 - DEBUG - Taking top 8 variants by coverage in window 9:45545160-45545161
2012-10-07 17:10:25,700 - DEBUG - Taking top 8 variants by coverage in window 9:45546762-45546772
2012-10-07 17:10:26,700 - DEBUG - Taking top 8 variants by coverage in window 9:45546976-45546984
2012-10-07 17:10:27,205 - DEBUG - Taking top 8 variants by coverage in window 9:45551755-45551756
2012-10-07 17:10:28,112 - DEBUG - Taking top 8 variants by coverage in window 9:45557922-45557923
2012-10-07 17:10:28,471 - DEBUG - Taking top 8 variants by coverage in window 9:45563033-45563034
2012-10-07 17:10:28,864 - DEBUG - Taking top 8 variants by coverage in window 9:45565181-45565182
2012-10-07 17:10:29,118 - DEBUG - Taking top 8 variants by coverage in window 9:45565736-45565737
2012-10-07 17:10:30,300 - DEBUG - Taking top 8 variants by coverage in window 9:45572918-45572919
2012-10-07 17:10:30,709 - DEBUG - Taking top 8 variants by coverage in window 9:45578476-45578477
2012-10-07 17:10:30,908 - DEBUG - Taking top 8 variants by coverage in window 9:45579440-45579441
2012-10-07 17:10:32,239 - DEBUG - Taking top 8 variants by coverage in window 9:45595064-45595065
2012-10-07 17:10:33,326 - DEBUG - Taking top 8 variants by coverage in window 9:45604221-45604223
2012-10-07 17:10:33,436 - DEBUG - Taking top 8 variants by coverage in window 9:45604625-45604626
2012-10-07 17:10:33,581 - DEBUG - Taking top 8 variants by coverage in window 9:45605469-45605470
2012-10-07 17:10:33,735 - DEBUG - Taking top 8 variants by coverage in window 9:45606869-45606870
2012-10-07 17:10:33,755 - DEBUG - Taking top 8 variants by coverage in window 9:45606870-45606872
2012-10-07 17:10:34,161 - DEBUG - Taking top 8 variants by coverage in window 9:45612362-45612363
2012-10-07 17:10:34,487 - DEBUG - Taking top 8 variants by coverage in window 9:45616966-45616967
2012-10-07 17:10:35,011 - DEBUG - Taking top 8 variants by coverage in window 9:45624156-45624157
2012-10-07 17:10:36,538 - DEBUG - Taking top 8 variants by coverage in window 9:45635281-45635286
2012-10-07 17:10:37,786 - DEBUG - Taking top 8 variants by coverage in window 9:45650970-45650971
2012-10-07 17:10:38,404 - DEBUG - Taking top 8 variants by coverage in window 9:45657111-45657112
2012-10-07 17:10:40,062 - DEBUG - Taking top 8 variants by coverage in window 9:45677252-45677253
2012-10-07 17:10:40,734 - DEBUG - Taking top 8 variants by coverage in window 9:45687333-45687334
2012-10-07 17:10:40,796 - DEBUG - Taking top 8 variants by coverage in window 9:45688697-45688698
2012-10-07 17:10:40,978 - DEBUG - Taking top 8 variants by coverage in window 9:45691765-45691775
2012-10-07 17:10:40,985 - DEBUG - Taking top 8 variants by coverage in window 9:45691778-45691779
2012-10-07 17:10:41,007 - DEBUG - Taking top 8 variants by coverage in window 9:45691804-45691805
2012-10-07 17:10:41,093 - DEBUG - Taking top 8 variants by coverage in window 9:45692589-45692590
2012-10-07 17:10:41,404 - DEBUG - Taking top 8 variants by coverage in window 9:45698493-45698509
2012-10-07 17:10:41,451 - DEBUG - Taking top 8 variants by coverage in window 9:45698799-45698800
2012-10-07 17:10:41,529 - DEBUG - Taking top 8 variants by coverage in window 9:45698883-45698884
2012-10-07 17:10:42,101 - DEBUG - Taking top 8 variants by coverage in window 9:45704843-45704844
2012-10-07 17:10:42,137 - DEBUG - Taking top 8 variants by coverage in window 9:45704852-45704853
2012-10-07 17:10:42,167 - DEBUG - Taking top 8 variants by coverage in window 9:45704855-45704858
2012-10-07 17:10:42,707 - DEBUG - Taking top 8 variants by coverage in window 9:45709222-45709223
2012-10-07 17:10:42,782 - DEBUG - Taking top 8 variants by coverage in window 9:45709770-45709771
2012-10-07 17:10:43,122 - DEBUG - Taking top 8 variants by coverage in window 9:45716326-45716327
2012-10-07 17:10:43,211 - DEBUG - Taking top 8 variants by coverage in window 9:45716357-45716358
2012-10-07 17:10:46,125 - DEBUG - Taking top 8 variants by coverage in window 9:45767445-45767446
2012-10-07 17:10:46,142 - DEBUG - Taking top 8 variants by coverage in window 9:45767624-45767625
2012-10-07 17:10:46,155 - DEBUG - Taking top 8 variants by coverage in window 9:45767653-45767654
2012-10-07 17:10:47,226 - DEBUG - Taking top 8 variants by coverage in window 9:45788365-45788366
2012-10-07 17:10:47,571 - DEBUG - Taking top 8 variants by coverage in window 9:45794249-45794250
2012-10-07 17:10:47,988 - DEBUG - Taking top 8 variants by coverage in window 9:45798286-45798287
2012-10-07 17:10:48,090 - DEBUG - Taking top 8 variants by coverage in window 9:45798332-45798334
2012-10-07 17:10:48,205 - DEBUG - Taking top 8 variants by coverage in window 9:45798335-45798336
2012-10-07 17:10:48,325 - DEBUG - Taking top 8 variants by coverage in window 9:45798360-45798363
2012-10-07 17:10:48,495 - DEBUG - Taking top 8 variants by coverage in window 9:45799233-45799235
2012-10-07 17:10:48,540 - DEBUG - Taking top 8 variants by coverage in window 9:45799240-45799241
2012-10-07 17:10:48,866 - DEBUG - Taking top 8 variants by coverage in window 9:45803086-45803087
2012-10-07 17:10:49,050 - DEBUG - Taking top 8 variants by coverage in window 9:45805437-45805439
2012-10-07 17:10:49,081 - DEBUG - Taking top 8 variants by coverage in window 9:45805508-45805510
2012-10-07 17:10:49,138 - DEBUG - Taking top 8 variants by coverage in window 9:45805534-45805535
2012-10-07 17:10:49,577 - DEBUG - Taking top 8 variants by coverage in window 9:45809233-45809234
2012-10-07 17:10:49,965 - DEBUG - Taking top 8 variants by coverage in window 9:45812227-45812228
2012-10-07 17:10:50,478 - DEBUG - Taking top 8 variants by coverage in window 9:45817303-45817304
2012-10-07 17:10:50,675 - DEBUG - Taking top 8 variants by coverage in window 9:45819076-45819077
2012-10-07 17:10:50,698 - DEBUG - Taking top 8 variants by coverage in window 9:45819101-45819102
2012-10-07 17:10:50,967 - DEBUG - Taking top 8 variants by coverage in window 9:45824804-45824805
2012-10-07 17:10:51,538 - DEBUG - Taking top 8 variants by coverage in window 9:45832842-45832843
2012-10-07 17:10:52,432 - DEBUG - Taking top 8 variants by coverage in window 9:45845498-45845502
2012-10-07 17:10:53,024 - DEBUG - Taking top 8 variants by coverage in window 9:45853599-45853600
2012-10-07 17:10:53,235 - DEBUG - Taking top 8 variants by coverage in window 9:45856021-45856030
2012-10-07 17:10:54,722 - DEBUG - Taking top 8 variants by coverage in window 9:45875108-45875109
2012-10-07 17:10:55,108 - DEBUG - Taking top 8 variants by coverage in window 9:45881988-45881989
2012-10-07 17:10:55,141 - DEBUG - Taking top 8 variants by coverage in window 9:45882089-45882090
2012-10-07 17:10:55,234 - DEBUG - Taking top 8 variants by coverage in window 9:45883181-45883182
2012-10-07 17:10:55,572 - DEBUG - Taking top 8 variants by coverage in window 9:45886004-45886005
2012-10-07 17:10:56,055 - DEBUG - Taking top 8 variants by coverage in window 9:45893354-45893361
2012-10-07 17:10:56,365 - DEBUG - Taking top 8 variants by coverage in window 9:45896381-45896382
2012-10-07 17:10:58,048 - DEBUG - Taking top 8 variants by coverage in window 9:45923137-45923138
2012-10-07 17:10:58,725 - DEBUG - Taking top 8 variants by coverage in window 9:45931998-45931999
2012-10-07 17:10:59,702 - DEBUG - Taking top 8 variants by coverage in window 9:45950898-45950899
2012-10-07 17:11:00,251 - DEBUG - Taking top 8 variants by coverage in window 9:45961861-45961862
2012-10-07 17:11:00,286 - DEBUG - Taking top 8 variants by coverage in window 9:45961893-45961897
2012-10-07 17:11:00,830 - DEBUG - Taking top 8 variants by coverage in window 9:45966687-45966688
2012-10-07 17:11:01,057 - DEBUG - Taking top 8 variants by coverage in window 9:45969004-45969006
2012-10-07 17:11:02,137 - DEBUG - Taking top 8 variants by coverage in window 9:45980882-45980883
2012-10-07 17:11:02,172 - DEBUG - Taking top 8 variants by coverage in window 9:45981047-45981048
2012-10-07 17:11:02,882 - DEBUG - Taking top 8 variants by coverage in window 9:45987823-45987824
2012-10-07 17:11:02,912 - DEBUG - Taking top 8 variants by coverage in window 9:45987824-45987825
2012-10-07 17:11:03,170 - DEBUG - Taking top 8 variants by coverage in window 9:45987875-45987897
2012-10-07 17:11:03,444 - DEBUG - Taking top 8 variants by coverage in window 9:45987918-45987919
2012-10-07 17:11:03,580 - DEBUG - Taking top 8 variants by coverage in window 9:45988049-45988050
2012-10-07 17:11:03,623 - DEBUG - Taking top 8 variants by coverage in window 9:45988052-45988053
2012-10-07 17:11:03,755 - DEBUG - Taking top 8 variants by coverage in window 9:45988511-45988512
2012-10-07 17:11:03,808 - DEBUG - Taking top 8 variants by coverage in window 9:45989052-45989062
2012-10-07 17:11:04,221 - DEBUG - Taking top 8 variants by coverage in window 9:45997564-45997566
2012-10-07 17:11:04,252 - DEBUG - Taking top 8 variants by coverage in window 9:45997580-45997590
2012-10-07 17:11:09,489 - DEBUG - Read 107000 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 17:11:09,758 - DEBUG - Read 116820 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 17:11:10,042 - DEBUG - Read 133137 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 17:11:10,366 - DEBUG - Read 136001 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 17:11:10,669 - DEBUG - Read 126253 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 17:11:10,940 - DEBUG - Read 121305 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 17:11:11,222 - DEBUG - Read 127682 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 17:11:11,500 - DEBUG - Read 117448 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 17:11:11,766 - DEBUG - Read 113501 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 17:11:12,030 - DEBUG - Read 110151 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 17:11:12,372 - DEBUG - Read 124251 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 17:11:12,631 - DEBUG - Read 114915 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 17:11:12,903 - DEBUG - Read 117274 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 17:11:13,174 - DEBUG - Read 125978 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 17:11:13,470 - DEBUG - Read 135773 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 17:11:13,721 - DEBUG - Read 105985 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 17:11:13,997 - DEBUG - Read 129516 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 17:11:14,351 - DEBUG - Read 123109 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 17:11:14,600 - DEBUG - Read 112072 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 17:11:14,860 - DEBUG - Read 106858 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 17:11:14,968 - DEBUG - Detected 22248 variants in 107000 reads
2012-10-07 17:11:15,131 - DEBUG - Detected 31973 variants in 116820 reads
2012-10-07 17:11:15,366 - DEBUG - Detected 42659 variants in 133137 reads
2012-10-07 17:11:15,636 - DEBUG - Detected 49644 variants in 136001 reads
2012-10-07 17:11:15,932 - DEBUG - Detected 56909 variants in 126253 reads
2012-10-07 17:11:16,253 - DEBUG - Detected 62600 variants in 121305 reads
2012-10-07 17:11:16,613 - DEBUG - Detected 76615 variants in 127682 reads
2012-10-07 17:11:17,016 - DEBUG - Detected 83144 variants in 117448 reads
2012-10-07 17:11:17,452 - DEBUG - Detected 88634 variants in 113501 reads
2012-10-07 17:11:17,951 - DEBUG - Detected 93783 variants in 110151 reads
2012-10-07 17:11:18,439 - DEBUG - Detected 98538 variants in 124251 reads
2012-10-07 17:11:18,950 - DEBUG - Detected 102666 variants in 114915 reads
2012-10-07 17:11:19,473 - DEBUG - Detected 107681 variants in 117274 reads
2012-10-07 17:11:20,034 - DEBUG - Detected 112208 variants in 125978 reads
2012-10-07 17:11:20,628 - DEBUG - Detected 120720 variants in 135773 reads
2012-10-07 17:11:21,284 - DEBUG - Detected 125013 variants in 105985 reads
2012-10-07 17:11:21,934 - DEBUG - Detected 129096 variants in 129516 reads
2012-10-07 17:11:22,598 - DEBUG - Detected 133518 variants in 123109 reads
2012-10-07 17:11:23,278 - DEBUG - Detected 138129 variants in 112072 reads
2012-10-07 17:11:23,968 - DEBUG - Detected 142837 variants in 106858 reads
2012-10-07 17:11:25,101 - DEBUG - Taking top 8 variants by coverage in window 9:46000988-46000990
2012-10-07 17:11:25,115 - DEBUG - Taking top 8 variants by coverage in window 9:46001098-46001099
2012-10-07 17:11:26,250 - DEBUG - Taking top 8 variants by coverage in window 9:46017844-46017846
2012-10-07 17:11:26,654 - DEBUG - Taking top 8 variants by coverage in window 9:46022325-46022326
2012-10-07 17:11:28,315 - DEBUG - Taking top 8 variants by coverage in window 9:46041691-46041692
2012-10-07 17:11:29,336 - DEBUG - Taking top 8 variants by coverage in window 9:46053474-46053481
2012-10-07 17:11:29,581 - DEBUG - Taking top 8 variants by coverage in window 9:46055310-46055311
2012-10-07 17:11:29,768 - DEBUG - Taking top 8 variants by coverage in window 9:46056886-46056887
2012-10-07 17:11:29,922 - DEBUG - Taking top 8 variants by coverage in window 9:46058037-46058047
2012-10-07 17:11:30,100 - DEBUG - Taking top 8 variants by coverage in window 9:46059398-46059399
2012-10-07 17:11:30,301 - DEBUG - Taking top 8 variants by coverage in window 9:46061128-46061137
2012-10-07 17:11:30,508 - DEBUG - Taking top 8 variants by coverage in window 9:46061477-46061478
2012-10-07 17:11:30,772 - DEBUG - Taking top 8 variants by coverage in window 9:46063005-46063006
2012-10-07 17:11:31,001 - DEBUG - Taking top 8 variants by coverage in window 9:46064195-46064196
2012-10-07 17:11:31,037 - DEBUG - Taking top 8 variants by coverage in window 9:46064229-46064230
2012-10-07 17:11:31,054 - DEBUG - Taking top 8 variants by coverage in window 9:46064231-46064232
2012-10-07 17:11:31,626 - DEBUG - Taking top 8 variants by coverage in window 9:46069574-46069575
2012-10-07 17:11:31,788 - DEBUG - Taking top 8 variants by coverage in window 9:46071110-46071111
2012-10-07 17:11:32,299 - DEBUG - Taking top 8 variants by coverage in window 9:46074805-46074806
2012-10-07 17:11:32,675 - DEBUG - Taking top 8 variants by coverage in window 9:46080443-46080444
2012-10-07 17:11:32,756 - DEBUG - Taking top 8 variants by coverage in window 9:46080700-46080701
2012-10-07 17:11:33,489 - DEBUG - Taking top 8 variants by coverage in window 9:46091620-46091621
2012-10-07 17:11:34,179 - DEBUG - Taking top 8 variants by coverage in window 9:46104198-46104199
2012-10-07 17:11:34,196 - DEBUG - Taking top 8 variants by coverage in window 9:46104260-46104292
2012-10-07 17:11:34,746 - DEBUG - Taking top 8 variants by coverage in window 9:46110882-46110887
2012-10-07 17:11:34,838 - DEBUG - Taking top 8 variants by coverage in window 9:46110945-46110949
2012-10-07 17:11:34,885 - DEBUG - Taking top 8 variants by coverage in window 9:46110979-46110986
2012-10-07 17:11:34,899 - DEBUG - Taking top 8 variants by coverage in window 9:46110995-46111000
2012-10-07 17:11:35,057 - DEBUG - Taking top 8 variants by coverage in window 9:46113545-46113546
2012-10-07 17:11:35,197 - DEBUG - Taking top 8 variants by coverage in window 9:46118503-46118504
2012-10-07 17:11:35,296 - DEBUG - Taking top 8 variants by coverage in window 9:46119486-46119487
2012-10-07 17:11:35,486 - DEBUG - Taking top 8 variants by coverage in window 9:46122639-46122640
2012-10-07 17:11:36,493 - DEBUG - Taking top 8 variants by coverage in window 9:46141140-46141141
2012-10-07 17:11:36,516 - DEBUG - Taking top 8 variants by coverage in window 9:46141147-46141148
2012-10-07 17:11:36,566 - DEBUG - Taking top 8 variants by coverage in window 9:46141744-46141745
2012-10-07 17:11:36,822 - DEBUG - Taking top 8 variants by coverage in window 9:46144089-46144090
2012-10-07 17:11:36,913 - DEBUG - Taking top 8 variants by coverage in window 9:46144639-46144643
2012-10-07 17:11:36,938 - DEBUG - Taking top 8 variants by coverage in window 9:46144790-46144793
2012-10-07 17:11:36,965 - DEBUG - Taking top 8 variants by coverage in window 9:46144805-46144806
2012-10-07 17:11:38,776 - DEBUG - Taking top 8 variants by coverage in window 9:46169203-46169211
2012-10-07 17:11:39,021 - DEBUG - Taking top 8 variants by coverage in window 9:46172143-46172153
2012-10-07 17:11:39,263 - DEBUG - Taking top 8 variants by coverage in window 9:46172469-46172470
2012-10-07 17:11:40,787 - DEBUG - Taking top 8 variants by coverage in window 9:46184655-46184656
2012-10-07 17:11:42,697 - DEBUG - Taking top 8 variants by coverage in window 9:46200755-46200769
2012-10-07 17:11:42,860 - DEBUG - Taking top 8 variants by coverage in window 9:46202945-46202949
2012-10-07 17:11:42,947 - DEBUG - Taking top 8 variants by coverage in window 9:46203241-46203242
2012-10-07 17:11:43,564 - DEBUG - Taking top 8 variants by coverage in window 9:46209640-46209648
2012-10-07 17:11:43,872 - DEBUG - Taking top 8 variants by coverage in window 9:46212063-46212064
2012-10-07 17:11:44,855 - DEBUG - Taking top 8 variants by coverage in window 9:46220464-46220465
2012-10-07 17:11:45,220 - DEBUG - Taking top 8 variants by coverage in window 9:46223885-46223886
2012-10-07 17:11:45,453 - DEBUG - Taking top 8 variants by coverage in window 9:46226058-46226059
2012-10-07 17:11:45,522 - DEBUG - Taking top 8 variants by coverage in window 9:46226126-46226127
2012-10-07 17:11:45,643 - DEBUG - Taking top 8 variants by coverage in window 9:46227337-46227346
2012-10-07 17:11:45,722 - DEBUG - Taking top 8 variants by coverage in window 9:46227416-46227417
2012-10-07 17:11:45,951 - DEBUG - Taking top 8 variants by coverage in window 9:46230925-46230926
2012-10-07 17:11:46,036 - DEBUG - Taking top 8 variants by coverage in window 9:46232923-46232924
2012-10-07 17:11:46,119 - DEBUG - Taking top 8 variants by coverage in window 9:46233623-46233624
2012-10-07 17:11:46,155 - DEBUG - Taking top 8 variants by coverage in window 9:46233689-46233690
2012-10-07 17:11:46,193 - DEBUG - Taking top 8 variants by coverage in window 9:46233750-46233753
2012-10-07 17:11:46,632 - DEBUG - Taking top 8 variants by coverage in window 9:46237177-46237178
2012-10-07 17:11:47,673 - DEBUG - Taking top 8 variants by coverage in window 9:46249212-46249213
2012-10-07 17:11:47,691 - DEBUG - Taking top 8 variants by coverage in window 9:46249226-46249227
2012-10-07 17:11:48,492 - DEBUG - Taking top 8 variants by coverage in window 9:46257547-46257548
2012-10-07 17:11:48,572 - DEBUG - Taking top 8 variants by coverage in window 9:46257964-46257965
2012-10-07 17:11:48,980 - DEBUG - Taking top 8 variants by coverage in window 9:46264265-46264266
2012-10-07 17:11:48,999 - DEBUG - Taking top 8 variants by coverage in window 9:46264424-46264425
2012-10-07 17:11:49,275 - DEBUG - Taking top 8 variants by coverage in window 9:46267163-46267164
2012-10-07 17:11:49,763 - DEBUG - Taking top 8 variants by coverage in window 9:46270187-46270188
2012-10-07 17:11:49,791 - DEBUG - Taking top 8 variants by coverage in window 9:46270189-46270190
2012-10-07 17:11:50,206 - DEBUG - Taking top 8 variants by coverage in window 9:46272914-46272915
2012-10-07 17:11:51,120 - DEBUG - Taking top 8 variants by coverage in window 9:46278039-46278041
2012-10-07 17:11:51,201 - DEBUG - Taking top 8 variants by coverage in window 9:46278059-46278060
2012-10-07 17:11:51,481 - DEBUG - Taking top 8 variants by coverage in window 9:46280457-46280458
2012-10-07 17:11:51,823 - DEBUG - Taking top 8 variants by coverage in window 9:46283413-46283431
2012-10-07 17:11:52,169 - DEBUG - Taking top 8 variants by coverage in window 9:46287147-46287152
2012-10-07 17:11:52,683 - DEBUG - Taking top 8 variants by coverage in window 9:46294086-46294087
2012-10-07 17:11:52,921 - DEBUG - Taking top 8 variants by coverage in window 9:46295097-46295098
2012-10-07 17:11:53,047 - DEBUG - Taking top 8 variants by coverage in window 9:46296048-46296051
2012-10-07 17:11:53,258 - DEBUG - Taking top 8 variants by coverage in window 9:46296085-46296086
2012-10-07 17:11:53,663 - DEBUG - Taking top 8 variants by coverage in window 9:46300812-46300813
2012-10-07 17:11:53,700 - DEBUG - Taking top 8 variants by coverage in window 9:46300856-46300857
2012-10-07 17:11:53,727 - DEBUG - Taking top 8 variants by coverage in window 9:46300899-46300900
2012-10-07 17:11:54,045 - DEBUG - Taking top 8 variants by coverage in window 9:46302898-46302899
2012-10-07 17:11:54,473 - DEBUG - Taking top 8 variants by coverage in window 9:46307877-46307878
2012-10-07 17:11:56,202 - DEBUG - Taking top 8 variants by coverage in window 9:46324236-46324237
2012-10-07 17:11:57,178 - DEBUG - Taking top 8 variants by coverage in window 9:46336291-46336292
2012-10-07 17:11:57,784 - DEBUG - Taking top 8 variants by coverage in window 9:46342246-46342250
2012-10-07 17:11:57,948 - DEBUG - Taking top 8 variants by coverage in window 9:46343725-46343726
2012-10-07 17:11:58,742 - DEBUG - Taking top 8 variants by coverage in window 9:46356376-46356377
2012-10-07 17:11:59,747 - DEBUG - Taking top 8 variants by coverage in window 9:46367932-46367933
2012-10-07 17:12:00,059 - DEBUG - Taking top 8 variants by coverage in window 9:46370159-46370160
2012-10-07 17:12:00,119 - DEBUG - Taking top 8 variants by coverage in window 9:46370167-46370174
2012-10-07 17:12:00,598 - DEBUG - Taking top 8 variants by coverage in window 9:46375048-46375050
2012-10-07 17:12:01,761 - DEBUG - Taking top 8 variants by coverage in window 9:46393244-46393245
2012-10-07 17:12:02,165 - DEBUG - Taking top 8 variants by coverage in window 9:46398645-46398646
2012-10-07 17:12:02,663 - DEBUG - Taking top 8 variants by coverage in window 9:46406579-46406580
2012-10-07 17:12:03,179 - DEBUG - Taking top 8 variants by coverage in window 9:46412522-46412523
2012-10-07 17:12:03,198 - DEBUG - Taking top 8 variants by coverage in window 9:46412554-46412556
2012-10-07 17:12:03,388 - DEBUG - Taking top 8 variants by coverage in window 9:46414181-46414182
2012-10-07 17:12:03,767 - DEBUG - Taking top 8 variants by coverage in window 9:46419495-46419496
2012-10-07 17:12:03,801 - DEBUG - Taking top 8 variants by coverage in window 9:46419500-46419501
2012-10-07 17:12:03,834 - DEBUG - Taking top 8 variants by coverage in window 9:46419502-46419503
2012-10-07 17:12:04,002 - DEBUG - Taking top 8 variants by coverage in window 9:46419547-46419550
2012-10-07 17:12:04,671 - DEBUG - Taking top 8 variants by coverage in window 9:46425228-46425229
2012-10-07 17:12:06,552 - DEBUG - Taking top 8 variants by coverage in window 9:46456271-46456274
2012-10-07 17:12:09,840 - DEBUG - Taking top 8 variants by coverage in window 9:46493202-46493203
2012-10-07 17:12:10,605 - DEBUG - Taking top 8 variants by coverage in window 9:46500452-46500459
2012-10-07 17:12:10,645 - DEBUG - Taking top 8 variants by coverage in window 9:46500474-46500475
2012-10-07 17:12:10,666 - DEBUG - Taking top 8 variants by coverage in window 9:46500478-46500479
2012-10-07 17:12:10,718 - DEBUG - Taking top 8 variants by coverage in window 9:46500516-46500517
2012-10-07 17:12:10,963 - DEBUG - Taking top 8 variants by coverage in window 9:46504824-46504825
2012-10-07 17:12:11,077 - DEBUG - Taking top 8 variants by coverage in window 9:46506394-46506404
2012-10-07 17:12:12,169 - DEBUG - Taking top 8 variants by coverage in window 9:46517160-46517161
2012-10-07 17:12:12,696 - DEBUG - Taking top 8 variants by coverage in window 9:46517722-46517723
2012-10-07 17:12:13,193 - DEBUG - Taking top 8 variants by coverage in window 9:46522916-46522920
2012-10-07 17:12:13,256 - DEBUG - Taking top 8 variants by coverage in window 9:46523193-46523205
2012-10-07 17:12:13,819 - DEBUG - Taking top 8 variants by coverage in window 9:46532992-46532993
2012-10-07 17:12:14,887 - DEBUG - Taking top 8 variants by coverage in window 9:46548154-46548156
2012-10-07 17:12:14,908 - DEBUG - Taking top 8 variants by coverage in window 9:46548180-46548181
2012-10-07 17:12:15,250 - DEBUG - Taking top 8 variants by coverage in window 9:46548408-46548409
2012-10-07 17:12:15,393 - DEBUG - Taking top 8 variants by coverage in window 9:46549136-46549137
2012-10-07 17:12:15,677 - DEBUG - Taking top 8 variants by coverage in window 9:46551973-46551976
2012-10-07 17:12:16,723 - DEBUG - Taking top 8 variants by coverage in window 9:46567453-46567454
2012-10-07 17:12:17,145 - DEBUG - Taking top 8 variants by coverage in window 9:46571631-46571632
2012-10-07 17:12:17,692 - DEBUG - Taking top 8 variants by coverage in window 9:46583881-46583882
2012-10-07 17:12:17,917 - DEBUG - Taking top 8 variants by coverage in window 9:46585452-46585453
2012-10-07 17:12:18,005 - DEBUG - Taking top 8 variants by coverage in window 9:46586572-46586573
2012-10-07 17:12:18,234 - DEBUG - Taking top 8 variants by coverage in window 9:46591935-46591936
2012-10-07 17:12:19,164 - DEBUG - Taking top 8 variants by coverage in window 9:46610734-46610738
2012-10-07 17:12:19,374 - DEBUG - Taking top 8 variants by coverage in window 9:46612162-46612164
2012-10-07 17:12:19,661 - DEBUG - Taking top 8 variants by coverage in window 9:46614693-46614700
2012-10-07 17:12:21,340 - DEBUG - Taking top 8 variants by coverage in window 9:46634622-46634623
2012-10-07 17:12:21,571 - DEBUG - Taking top 8 variants by coverage in window 9:46635731-46635752
2012-10-07 17:12:21,855 - DEBUG - Taking top 8 variants by coverage in window 9:46639584-46639585
2012-10-07 17:12:21,868 - DEBUG - Taking top 8 variants by coverage in window 9:46639604-46639605
2012-10-07 17:12:22,331 - DEBUG - Taking top 8 variants by coverage in window 9:46640144-46640147
2012-10-07 17:12:23,417 - DEBUG - Taking top 8 variants by coverage in window 9:46654541-46654542
2012-10-07 17:12:23,458 - DEBUG - Taking top 8 variants by coverage in window 9:46655178-46655179
2012-10-07 17:12:24,825 - DEBUG - Taking top 8 variants by coverage in window 9:46670021-46670030
2012-10-07 17:12:25,793 - DEBUG - Taking top 8 variants by coverage in window 9:46680964-46680965
2012-10-07 17:12:25,804 - DEBUG - Taking top 8 variants by coverage in window 9:46680965-46680966
2012-10-07 17:12:26,457 - DEBUG - Taking top 8 variants by coverage in window 9:46691430-46691431
2012-10-07 17:12:26,652 - DEBUG - Taking top 8 variants by coverage in window 9:46691975-46691976
2012-10-07 17:12:26,749 - DEBUG - Taking top 8 variants by coverage in window 9:46693433-46693434
2012-10-07 17:12:27,677 - DEBUG - Taking top 8 variants by coverage in window 9:46708661-46708662
2012-10-07 17:12:28,745 - DEBUG - Taking top 8 variants by coverage in window 9:46725723-46725724
2012-10-07 17:12:28,833 - DEBUG - Taking top 8 variants by coverage in window 9:46727281-46727282
2012-10-07 17:12:28,892 - DEBUG - Taking top 8 variants by coverage in window 9:46728235-46728243
2012-10-07 17:12:29,086 - DEBUG - Taking top 8 variants by coverage in window 9:46731261-46731262
2012-10-07 17:12:29,343 - DEBUG - Taking top 8 variants by coverage in window 9:46735903-46735904
2012-10-07 17:12:29,451 - DEBUG - Taking top 8 variants by coverage in window 9:46737580-46737581
2012-10-07 17:12:29,753 - DEBUG - Taking top 8 variants by coverage in window 9:46743350-46743370
2012-10-07 17:12:30,226 - DEBUG - Taking top 8 variants by coverage in window 9:46749769-46749770
2012-10-07 17:12:30,486 - DEBUG - Taking top 8 variants by coverage in window 9:46749851-46749858
2012-10-07 17:12:30,775 - DEBUG - Taking top 8 variants by coverage in window 9:46750563-46750567
2012-10-07 17:12:31,291 - DEBUG - Taking top 8 variants by coverage in window 9:46756891-46756892
2012-10-07 17:12:31,678 - DEBUG - Taking top 8 variants by coverage in window 9:46762035-46762036
2012-10-07 17:12:31,742 - DEBUG - Taking top 8 variants by coverage in window 9:46762083-46762084
2012-10-07 17:12:32,635 - DEBUG - Taking top 8 variants by coverage in window 9:46772898-46772900
2012-10-07 17:12:33,116 - DEBUG - Taking top 8 variants by coverage in window 9:46775413-46775424
2012-10-07 17:12:33,649 - DEBUG - Taking top 8 variants by coverage in window 9:46781822-46781823
2012-10-07 17:12:33,956 - DEBUG - Taking top 8 variants by coverage in window 9:46788585-46788593
2012-10-07 17:12:34,083 - DEBUG - Taking top 8 variants by coverage in window 9:46790435-46790436
2012-10-07 17:12:34,426 - DEBUG - Taking top 8 variants by coverage in window 9:46796676-46796677
2012-10-07 17:12:34,526 - DEBUG - Taking top 8 variants by coverage in window 9:46798930-46798935
2012-10-07 17:12:34,593 - DEBUG - Taking top 8 variants by coverage in window 9:46800363-46800364
2012-10-07 17:12:34,954 - DEBUG - Taking top 8 variants by coverage in window 9:46808441-46808442
2012-10-07 17:12:34,985 - DEBUG - Taking top 8 variants by coverage in window 9:46808443-46808444
2012-10-07 17:12:35,090 - DEBUG - Taking top 8 variants by coverage in window 9:46808475-46808476
2012-10-07 17:12:35,126 - DEBUG - Taking top 8 variants by coverage in window 9:46808481-46808482
2012-10-07 17:12:36,687 - DEBUG - Taking top 8 variants by coverage in window 9:46827418-46827419
2012-10-07 17:12:37,303 - DEBUG - Taking top 8 variants by coverage in window 9:46837925-46837927
2012-10-07 17:12:37,931 - DEBUG - Taking top 8 variants by coverage in window 9:46848617-46848618
2012-10-07 17:12:38,268 - DEBUG - Taking top 8 variants by coverage in window 9:46856547-46856548
2012-10-07 17:12:38,549 - DEBUG - Taking top 8 variants by coverage in window 9:46859670-46859671
2012-10-07 17:12:39,021 - DEBUG - Taking top 8 variants by coverage in window 9:46869288-46869289
2012-10-07 17:12:39,400 - DEBUG - Taking top 8 variants by coverage in window 9:46874676-46874690
2012-10-07 17:12:39,647 - DEBUG - Taking top 8 variants by coverage in window 9:46877400-46877401
2012-10-07 17:12:39,681 - DEBUG - Taking top 8 variants by coverage in window 9:46877558-46877570
2012-10-07 17:12:40,175 - DEBUG - Taking top 8 variants by coverage in window 9:46884257-46884258
2012-10-07 17:12:40,580 - DEBUG - Taking top 8 variants by coverage in window 9:46891412-46891422
2012-10-07 17:12:40,625 - DEBUG - Taking top 8 variants by coverage in window 9:46891448-46891450
2012-10-07 17:12:40,654 - DEBUG - Taking top 8 variants by coverage in window 9:46891457-46891458
2012-10-07 17:12:40,878 - DEBUG - Taking top 8 variants by coverage in window 9:46893240-46893241
2012-10-07 17:12:43,946 - DEBUG - Taking top 8 variants by coverage in window 9:46925095-46925096
2012-10-07 17:12:44,149 - DEBUG - Taking top 8 variants by coverage in window 9:46927998-46927999
2012-10-07 17:12:44,330 - DEBUG - Taking top 8 variants by coverage in window 9:46930955-46930956
2012-10-07 17:12:44,639 - DEBUG - Taking top 8 variants by coverage in window 9:46934720-46934721
2012-10-07 17:12:44,764 - DEBUG - Taking top 8 variants by coverage in window 9:46935724-46935725
2012-10-07 17:12:44,991 - DEBUG - Taking top 8 variants by coverage in window 9:46939196-46939204
2012-10-07 17:12:45,323 - DEBUG - Taking top 8 variants by coverage in window 9:46940278-46940279
2012-10-07 17:12:45,432 - DEBUG - Taking top 8 variants by coverage in window 9:46940937-46940938
2012-10-07 17:12:45,444 - DEBUG - Taking top 8 variants by coverage in window 9:46940964-46940965
2012-10-07 17:12:45,713 - DEBUG - Taking top 8 variants by coverage in window 9:46946182-46946183
2012-10-07 17:12:45,940 - DEBUG - Taking top 8 variants by coverage in window 9:46949078-46949082
2012-10-07 17:12:45,987 - DEBUG - Taking top 8 variants by coverage in window 9:46949122-46949123
2012-10-07 17:12:46,070 - DEBUG - Taking top 8 variants by coverage in window 9:46949972-46949973
2012-10-07 17:12:46,196 - DEBUG - Taking top 8 variants by coverage in window 9:46950953-46950959
2012-10-07 17:12:46,749 - DEBUG - Taking top 8 variants by coverage in window 9:46959146-46959150
2012-10-07 17:12:47,811 - DEBUG - Taking top 8 variants by coverage in window 9:46973265-46973266
2012-10-07 17:12:49,091 - DEBUG - Taking top 8 variants by coverage in window 9:46989715-46989726
2012-10-07 17:12:49,152 - DEBUG - Taking top 8 variants by coverage in window 9:46989743-46989744
2012-10-07 17:12:49,486 - DEBUG - Taking top 8 variants by coverage in window 9:46993016-46993022
2012-10-07 17:12:51,221 - DEBUG - Read 104053 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 17:12:51,482 - DEBUG - Read 114167 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 17:12:51,759 - DEBUG - Read 131436 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 17:12:52,069 - DEBUG - Read 132497 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 17:12:52,368 - DEBUG - Read 124997 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 17:12:52,635 - DEBUG - Read 119591 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 17:12:52,911 - DEBUG - Read 125943 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 17:12:53,181 - DEBUG - Read 114273 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 17:12:53,438 - DEBUG - Read 110389 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 17:12:53,697 - DEBUG - Read 108271 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 17:12:53,974 - DEBUG - Read 121038 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 17:12:54,218 - DEBUG - Read 109790 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 17:12:54,478 - DEBUG - Read 111953 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 17:12:54,738 - DEBUG - Read 122417 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 17:12:55,029 - DEBUG - Read 133466 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 17:12:55,275 - DEBUG - Read 103619 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 17:12:55,547 - DEBUG - Read 127362 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 17:12:55,822 - DEBUG - Read 120349 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 17:12:56,058 - DEBUG - Read 105903 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 17:12:56,314 - DEBUG - Read 105196 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 17:12:56,410 - DEBUG - Detected 18198 variants in 104053 reads
2012-10-07 17:12:56,561 - DEBUG - Detected 29066 variants in 114167 reads
2012-10-07 17:12:56,766 - DEBUG - Detected 37574 variants in 131436 reads
2012-10-07 17:12:57,003 - DEBUG - Detected 43507 variants in 132497 reads
2012-10-07 17:12:57,259 - DEBUG - Detected 50880 variants in 124997 reads
2012-10-07 17:12:57,544 - DEBUG - Detected 55708 variants in 119591 reads
2012-10-07 17:12:57,888 - DEBUG - Detected 69338 variants in 125943 reads
2012-10-07 17:12:58,261 - DEBUG - Detected 73682 variants in 114273 reads
2012-10-07 17:12:58,658 - DEBUG - Detected 78955 variants in 110389 reads
2012-10-07 17:12:59,074 - DEBUG - Detected 83701 variants in 108271 reads
2012-10-07 17:12:59,524 - DEBUG - Detected 87705 variants in 121038 reads
2012-10-07 17:12:59,955 - DEBUG - Detected 91121 variants in 109790 reads
2012-10-07 17:13:00,396 - DEBUG - Detected 94980 variants in 111953 reads
2012-10-07 17:13:00,862 - DEBUG - Detected 99099 variants in 122417 reads
2012-10-07 17:13:01,391 - DEBUG - Detected 106460 variants in 133466 reads
2012-10-07 17:13:01,892 - DEBUG - Detected 110284 variants in 103619 reads
2012-10-07 17:13:02,433 - DEBUG - Detected 114173 variants in 127362 reads
2012-10-07 17:13:03,017 - DEBUG - Detected 118204 variants in 120349 reads
2012-10-07 17:13:03,605 - DEBUG - Detected 122205 variants in 105903 reads
2012-10-07 17:13:04,251 - DEBUG - Detected 126215 variants in 105196 reads
2012-10-07 17:13:06,341 - DEBUG - Taking top 8 variants by coverage in window 9:47020795-47020796
2012-10-07 17:13:06,437 - DEBUG - Taking top 8 variants by coverage in window 9:47022206-47022207
2012-10-07 17:13:06,455 - DEBUG - Taking top 8 variants by coverage in window 9:47022209-47022210
2012-10-07 17:13:07,363 - DEBUG - Taking top 8 variants by coverage in window 9:47038813-47038814
2012-10-07 17:13:08,296 - DEBUG - Taking top 8 variants by coverage in window 9:47051892-47051893
2012-10-07 17:13:08,427 - DEBUG - Taking top 8 variants by coverage in window 9:47053639-47053640
2012-10-07 17:13:08,801 - DEBUG - Taking top 8 variants by coverage in window 9:47059259-47059260
2012-10-07 17:13:09,067 - DEBUG - Taking top 8 variants by coverage in window 9:47062386-47062388
2012-10-07 17:13:09,209 - DEBUG - Taking top 8 variants by coverage in window 9:47063612-47063613
2012-10-07 17:13:09,669 - DEBUG - Taking top 8 variants by coverage in window 9:47069918-47069919
2012-10-07 17:13:10,115 - DEBUG - Taking top 8 variants by coverage in window 9:47073745-47073747
2012-10-07 17:13:10,707 - DEBUG - Taking top 8 variants by coverage in window 9:47080146-47080150
2012-10-07 17:13:12,253 - DEBUG - Taking top 8 variants by coverage in window 9:47100277-47100283
2012-10-07 17:13:12,287 - DEBUG - Taking top 8 variants by coverage in window 9:47100289-47100290
2012-10-07 17:13:12,380 - DEBUG - Taking top 8 variants by coverage in window 9:47100459-47100460
2012-10-07 17:13:13,034 - DEBUG - Taking top 8 variants by coverage in window 9:47105505-47105507
2012-10-07 17:13:13,268 - DEBUG - Taking top 8 variants by coverage in window 9:47107571-47107572
2012-10-07 17:13:13,792 - DEBUG - Taking top 8 variants by coverage in window 9:47114157-47114158
2012-10-07 17:13:14,376 - DEBUG - Taking top 8 variants by coverage in window 9:47119674-47119675
2012-10-07 17:13:14,640 - DEBUG - Taking top 8 variants by coverage in window 9:47120423-47120429
2012-10-07 17:13:14,685 - DEBUG - Taking top 8 variants by coverage in window 9:47120445-47120446
2012-10-07 17:13:15,193 - DEBUG - Taking top 8 variants by coverage in window 9:47124174-47124182
2012-10-07 17:13:16,106 - DEBUG - Taking top 8 variants by coverage in window 9:47129873-47129875
2012-10-07 17:13:16,249 - DEBUG - Taking top 8 variants by coverage in window 9:47131522-47131523
2012-10-07 17:13:16,260 - DEBUG - Taking top 8 variants by coverage in window 9:47131525-47131526
2012-10-07 17:13:16,451 - DEBUG - Taking top 8 variants by coverage in window 9:47132673-47132674
2012-10-07 17:13:16,811 - DEBUG - Taking top 8 variants by coverage in window 9:47135669-47135670
2012-10-07 17:13:17,435 - DEBUG - Taking top 8 variants by coverage in window 9:47143175-47143181
2012-10-07 17:13:17,822 - DEBUG - Taking top 8 variants by coverage in window 9:47145669-47145670
2012-10-07 17:13:17,937 - DEBUG - Taking top 8 variants by coverage in window 9:47146867-47146868
2012-10-07 17:13:18,045 - DEBUG - Taking top 8 variants by coverage in window 9:47148322-47148327
2012-10-07 17:13:18,096 - DEBUG - Taking top 8 variants by coverage in window 9:47148710-47148711
2012-10-07 17:13:18,108 - DEBUG - Taking top 8 variants by coverage in window 9:47148725-47148726
2012-10-07 17:13:19,739 - DEBUG - Taking top 8 variants by coverage in window 9:47184771-47184773
2012-10-07 17:13:19,864 - DEBUG - Taking top 8 variants by coverage in window 9:47188350-47188360
2012-10-07 17:13:20,035 - DEBUG - Taking top 8 variants by coverage in window 9:47190423-47190424
2012-10-07 17:13:20,128 - DEBUG - Taking top 8 variants by coverage in window 9:47192181-47192184
2012-10-07 17:13:20,147 - DEBUG - Taking top 8 variants by coverage in window 9:47192185-47192188
2012-10-07 17:13:20,357 - DEBUG - Taking top 8 variants by coverage in window 9:47192202-47192205
2012-10-07 17:13:20,392 - DEBUG - Taking top 8 variants by coverage in window 9:47192221-47192222
2012-10-07 17:13:20,630 - DEBUG - Taking top 8 variants by coverage in window 9:47199340-47199341
2012-10-07 17:13:21,581 - DEBUG - Taking top 8 variants by coverage in window 9:47214930-47214931
2012-10-07 17:13:22,185 - DEBUG - Taking top 8 variants by coverage in window 9:47228542-47228543
2012-10-07 17:13:22,361 - DEBUG - Taking top 8 variants by coverage in window 9:47230803-47230804
2012-10-07 17:13:22,548 - DEBUG - Taking top 8 variants by coverage in window 9:47235251-47235256
2012-10-07 17:13:23,083 - DEBUG - Taking top 8 variants by coverage in window 9:47241649-47241652
2012-10-07 17:13:23,508 - DEBUG - Taking top 8 variants by coverage in window 9:47243987-47243988
2012-10-07 17:13:23,528 - DEBUG - Taking top 8 variants by coverage in window 9:47244008-47244009
2012-10-07 17:13:23,599 - DEBUG - Taking top 8 variants by coverage in window 9:47245700-47245701
2012-10-07 17:13:24,096 - DEBUG - Taking top 8 variants by coverage in window 9:47250743-47250744
2012-10-07 17:13:25,072 - DEBUG - Taking top 8 variants by coverage in window 9:47273289-47273290
2012-10-07 17:13:25,775 - DEBUG - Taking top 8 variants by coverage in window 9:47289231-47289233
2012-10-07 17:13:25,833 - DEBUG - Taking top 8 variants by coverage in window 9:47289350-47289351
2012-10-07 17:13:26,043 - DEBUG - Taking top 8 variants by coverage in window 9:47289619-47289620
2012-10-07 17:13:27,476 - DEBUG - Taking top 8 variants by coverage in window 9:47312705-47312726
2012-10-07 17:13:27,886 - DEBUG - Taking top 8 variants by coverage in window 9:47320471-47320473
2012-10-07 17:13:28,395 - DEBUG - Taking top 8 variants by coverage in window 9:47325614-47325615
2012-10-07 17:13:28,867 - DEBUG - Taking top 8 variants by coverage in window 9:47331285-47331286
2012-10-07 17:13:29,153 - DEBUG - Taking top 8 variants by coverage in window 9:47344340-47344341
2012-10-07 17:13:29,205 - DEBUG - Taking top 8 variants by coverage in window 9:47344366-47344368
2012-10-07 17:13:29,471 - DEBUG - Taking top 8 variants by coverage in window 9:47349261-47349262
2012-10-07 17:13:29,502 - DEBUG - Taking top 8 variants by coverage in window 9:47349271-47349272
2012-10-07 17:13:29,549 - DEBUG - Taking top 8 variants by coverage in window 9:47349277-47349280
2012-10-07 17:13:30,198 - DEBUG - Taking top 8 variants by coverage in window 9:47358441-47358442
2012-10-07 17:13:30,407 - DEBUG - Taking top 8 variants by coverage in window 9:47361066-47361067
2012-10-07 17:13:30,440 - DEBUG - Taking top 8 variants by coverage in window 9:47361069-47361070
2012-10-07 17:13:30,461 - DEBUG - Taking top 8 variants by coverage in window 9:47361072-47361074
2012-10-07 17:13:31,183 - DEBUG - Taking top 8 variants by coverage in window 9:47369738-47369739
2012-10-07 17:13:31,625 - DEBUG - Taking top 8 variants by coverage in window 9:47380869-47380871
2012-10-07 17:13:32,052 - DEBUG - Taking top 8 variants by coverage in window 9:47391782-47391796
2012-10-07 17:13:32,536 - DEBUG - Taking top 8 variants by coverage in window 9:47401037-47401038
2012-10-07 17:13:32,554 - DEBUG - Taking top 8 variants by coverage in window 9:47401041-47401045
2012-10-07 17:13:32,708 - DEBUG - Taking top 8 variants by coverage in window 9:47404321-47404322
2012-10-07 17:13:32,999 - DEBUG - Taking top 8 variants by coverage in window 9:47419315-47419318
2012-10-07 17:13:33,850 - DEBUG - Taking top 8 variants by coverage in window 9:47439868-47439869
2012-10-07 17:13:33,924 - DEBUG - Taking top 8 variants by coverage in window 9:47440798-47440822
2012-10-07 17:13:34,724 - DEBUG - Taking top 8 variants by coverage in window 9:47458751-47458763
2012-10-07 17:13:35,123 - DEBUG - Taking top 8 variants by coverage in window 9:47470535-47470536
2012-10-07 17:13:37,264 - DEBUG - Taking top 8 variants by coverage in window 9:47514294-47514295
2012-10-07 17:13:37,278 - DEBUG - Taking top 8 variants by coverage in window 9:47514311-47514312
2012-10-07 17:13:37,851 - DEBUG - Taking top 8 variants by coverage in window 9:47524741-47524744
2012-10-07 17:13:38,057 - DEBUG - Taking top 8 variants by coverage in window 9:47528336-47528337
2012-10-07 17:13:38,362 - DEBUG - Taking top 8 variants by coverage in window 9:47534964-47534965
2012-10-07 17:13:39,104 - DEBUG - Taking top 8 variants by coverage in window 9:47550646-47550647
2012-10-07 17:13:39,126 - DEBUG - Taking top 8 variants by coverage in window 9:47550675-47550676
2012-10-07 17:13:39,566 - DEBUG - Taking top 8 variants by coverage in window 9:47559342-47559344
2012-10-07 17:13:39,805 - DEBUG - Taking top 8 variants by coverage in window 9:47559356-47559359
2012-10-07 17:13:39,928 - DEBUG - Taking top 8 variants by coverage in window 9:47559366-47559368
2012-10-07 17:13:39,987 - DEBUG - Taking top 8 variants by coverage in window 9:47559380-47559381
2012-10-07 17:13:40,038 - DEBUG - Taking top 8 variants by coverage in window 9:47559385-47559386
2012-10-07 17:13:40,127 - DEBUG - Taking top 8 variants by coverage in window 9:47559400-47559402
2012-10-07 17:13:40,393 - DEBUG - Taking top 8 variants by coverage in window 9:47561162-47561163
2012-10-07 17:13:40,802 - DEBUG - Taking top 8 variants by coverage in window 9:47567060-47567062
2012-10-07 17:13:41,411 - DEBUG - Taking top 8 variants by coverage in window 9:47574977-47574978
2012-10-07 17:13:41,457 - DEBUG - Taking top 8 variants by coverage in window 9:47576128-47576129
2012-10-07 17:13:41,675 - DEBUG - Taking top 8 variants by coverage in window 9:47579222-47579223
2012-10-07 17:13:43,332 - DEBUG - Taking top 8 variants by coverage in window 9:47613471-47613472
2012-10-07 17:13:44,341 - DEBUG - Taking top 8 variants by coverage in window 9:47633148-47633149
2012-10-07 17:13:45,135 - DEBUG - Taking top 8 variants by coverage in window 9:47648794-47648797
2012-10-07 17:13:45,218 - DEBUG - Taking top 8 variants by coverage in window 9:47648798-47648799
2012-10-07 17:13:45,271 - DEBUG - Taking top 8 variants by coverage in window 9:47648811-47648813
2012-10-07 17:13:45,647 - DEBUG - Taking top 8 variants by coverage in window 9:47650682-47650684
2012-10-07 17:13:45,801 - DEBUG - Taking top 8 variants by coverage in window 9:47650702-47650708
2012-10-07 17:13:46,016 - DEBUG - Taking top 8 variants by coverage in window 9:47650738-47650744
2012-10-07 17:13:46,624 - DEBUG - Taking top 8 variants by coverage in window 9:47654288-47654289
2012-10-07 17:13:47,041 - DEBUG - Taking top 8 variants by coverage in window 9:47664667-47664668
2012-10-07 17:13:48,528 - DEBUG - Taking top 8 variants by coverage in window 9:47686738-47686739
2012-10-07 17:13:48,562 - DEBUG - Taking top 8 variants by coverage in window 9:47686755-47686757
2012-10-07 17:13:48,655 - DEBUG - Taking top 8 variants by coverage in window 9:47686838-47686839
2012-10-07 17:13:49,210 - DEBUG - Taking top 8 variants by coverage in window 9:47692707-47692711
2012-10-07 17:13:49,488 - DEBUG - Taking top 8 variants by coverage in window 9:47694331-47694345
2012-10-07 17:13:50,300 - DEBUG - Taking top 8 variants by coverage in window 9:47705393-47705394
2012-10-07 17:13:50,325 - DEBUG - Taking top 8 variants by coverage in window 9:47705395-47705397
2012-10-07 17:13:50,417 - DEBUG - Taking top 8 variants by coverage in window 9:47705812-47705813
2012-10-07 17:13:50,833 - DEBUG - Taking top 8 variants by coverage in window 9:47711646-47711647
2012-10-07 17:13:51,138 - DEBUG - Taking top 8 variants by coverage in window 9:47713459-47713460
2012-10-07 17:13:51,500 - DEBUG - Taking top 8 variants by coverage in window 9:47719124-47719125
2012-10-07 17:13:52,032 - DEBUG - Taking top 8 variants by coverage in window 9:47723082-47723083
2012-10-07 17:13:52,078 - DEBUG - Taking top 8 variants by coverage in window 9:47723099-47723103
2012-10-07 17:13:52,090 - DEBUG - Taking top 8 variants by coverage in window 9:47723106-47723110
2012-10-07 17:13:52,613 - DEBUG - Taking top 8 variants by coverage in window 9:47725815-47725816
2012-10-07 17:13:52,895 - DEBUG - Taking top 8 variants by coverage in window 9:47727073-47727074
2012-10-07 17:13:53,146 - DEBUG - Taking top 8 variants by coverage in window 9:47729509-47729510
2012-10-07 17:13:54,010 - DEBUG - Taking top 8 variants by coverage in window 9:47740369-47740370
2012-10-07 17:13:54,654 - DEBUG - Taking top 8 variants by coverage in window 9:47749040-47749041
2012-10-07 17:13:55,008 - DEBUG - Taking top 8 variants by coverage in window 9:47752488-47752490
2012-10-07 17:13:56,027 - DEBUG - Taking top 8 variants by coverage in window 9:47767271-47767272
2012-10-07 17:13:56,875 - DEBUG - Taking top 8 variants by coverage in window 9:47776257-47776258
2012-10-07 17:13:57,053 - DEBUG - Taking top 8 variants by coverage in window 9:47778460-47778468
2012-10-07 17:13:57,263 - DEBUG - Taking top 8 variants by coverage in window 9:47780633-47780634
2012-10-07 17:13:57,304 - DEBUG - Taking top 8 variants by coverage in window 9:47780697-47780698
2012-10-07 17:13:58,334 - DEBUG - Taking top 8 variants by coverage in window 9:47792360-47792364
2012-10-07 17:13:58,579 - DEBUG - Taking top 8 variants by coverage in window 9:47794753-47794754
2012-10-07 17:13:58,603 - DEBUG - Taking top 8 variants by coverage in window 9:47794759-47794761
2012-10-07 17:13:59,525 - DEBUG - Taking top 8 variants by coverage in window 9:47806809-47806815
2012-10-07 17:14:00,114 - DEBUG - Taking top 8 variants by coverage in window 9:47815708-47815709
2012-10-07 17:14:00,793 - DEBUG - Taking top 8 variants by coverage in window 9:47824117-47824118
2012-10-07 17:14:01,563 - DEBUG - Taking top 8 variants by coverage in window 9:47837762-47837763
2012-10-07 17:14:02,413 - DEBUG - Taking top 8 variants by coverage in window 9:47850729-47850731
2012-10-07 17:14:03,534 - DEBUG - Taking top 8 variants by coverage in window 9:47868776-47868778
2012-10-07 17:14:04,032 - DEBUG - Taking top 8 variants by coverage in window 9:47875544-47875545
2012-10-07 17:14:04,047 - DEBUG - Taking top 8 variants by coverage in window 9:47875545-47875546
2012-10-07 17:14:04,537 - DEBUG - Taking top 8 variants by coverage in window 9:47884986-47884987
2012-10-07 17:14:05,298 - DEBUG - Taking top 8 variants by coverage in window 9:47899361-47899366
2012-10-07 17:14:05,451 - DEBUG - Taking top 8 variants by coverage in window 9:47899575-47899576
2012-10-07 17:14:05,657 - DEBUG - Taking top 8 variants by coverage in window 9:47903191-47903205
2012-10-07 17:14:06,028 - DEBUG - Taking top 8 variants by coverage in window 9:47903268-47903273
2012-10-07 17:14:06,280 - DEBUG - Taking top 8 variants by coverage in window 9:47907470-47907490
2012-10-07 17:14:06,572 - DEBUG - Taking top 8 variants by coverage in window 9:47910733-47910736
2012-10-07 17:14:06,717 - DEBUG - Taking top 8 variants by coverage in window 9:47911915-47911916
2012-10-07 17:14:07,083 - DEBUG - Taking top 8 variants by coverage in window 9:47918808-47918809
2012-10-07 17:14:07,133 - DEBUG - Taking top 8 variants by coverage in window 9:47919278-47919286
2012-10-07 17:14:07,763 - DEBUG - Taking top 8 variants by coverage in window 9:47927456-47927457
2012-10-07 17:14:07,849 - DEBUG - Taking top 8 variants by coverage in window 9:47928185-47928196
2012-10-07 17:14:08,818 - DEBUG - Taking top 8 variants by coverage in window 9:47938291-47938292
2012-10-07 17:14:08,892 - DEBUG - Taking top 8 variants by coverage in window 9:47938306-47938310
2012-10-07 17:14:09,975 - DEBUG - Taking top 8 variants by coverage in window 9:47945063-47945065
2012-10-07 17:14:10,318 - DEBUG - Taking top 8 variants by coverage in window 9:47948411-47948417
2012-10-07 17:14:10,938 - DEBUG - Taking top 8 variants by coverage in window 9:47948509-47948510
2012-10-07 17:14:11,214 - DEBUG - Taking top 8 variants by coverage in window 9:47953169-47953170
2012-10-07 17:14:11,292 - DEBUG - Taking top 8 variants by coverage in window 9:47954401-47954402
2012-10-07 17:14:12,059 - DEBUG - Taking top 8 variants by coverage in window 9:47964621-47964622
2012-10-07 17:14:12,704 - DEBUG - Taking top 8 variants by coverage in window 9:47974683-47974684
2012-10-07 17:14:13,279 - DEBUG - Taking top 8 variants by coverage in window 9:47984560-47984561
2012-10-07 17:14:13,338 - DEBUG - Taking top 8 variants by coverage in window 9:47984622-47984623
2012-10-07 17:14:13,630 - DEBUG - Taking top 8 variants by coverage in window 9:47989631-47989632
2012-10-07 17:14:13,900 - DEBUG - Taking top 8 variants by coverage in window 9:47994975-47994979
2012-10-07 17:14:15,267 - DEBUG - Read 101466 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 17:14:15,533 - DEBUG - Read 112256 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 17:14:15,816 - DEBUG - Read 127928 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 17:14:16,136 - DEBUG - Read 130128 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 17:14:16,440 - DEBUG - Read 121476 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 17:14:16,709 - DEBUG - Read 114898 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 17:14:16,992 - DEBUG - Read 123018 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 17:14:17,275 - DEBUG - Read 114484 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 17:14:17,539 - DEBUG - Read 107950 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 17:14:17,801 - DEBUG - Read 103443 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 17:14:18,085 - DEBUG - Read 119393 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 17:14:18,338 - DEBUG - Read 108244 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 17:14:18,606 - DEBUG - Read 109374 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 17:14:18,879 - DEBUG - Read 120597 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 17:14:19,179 - DEBUG - Read 129797 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 17:14:19,431 - DEBUG - Read 99666 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 17:14:19,708 - DEBUG - Read 122546 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 17:14:19,990 - DEBUG - Read 118168 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 17:14:20,240 - DEBUG - Read 105080 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 17:14:20,495 - DEBUG - Read 101657 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 17:14:20,601 - DEBUG - Detected 22669 variants in 101466 reads
2012-10-07 17:14:20,767 - DEBUG - Detected 34720 variants in 112256 reads
2012-10-07 17:14:21,002 - DEBUG - Detected 44231 variants in 127928 reads
2012-10-07 17:14:21,279 - DEBUG - Detected 52291 variants in 130128 reads
2012-10-07 17:14:21,588 - DEBUG - Detected 60545 variants in 121476 reads
2012-10-07 17:14:21,953 - DEBUG - Detected 67031 variants in 114898 reads
2012-10-07 17:14:22,339 - DEBUG - Detected 81286 variants in 123018 reads
2012-10-07 17:14:22,783 - DEBUG - Detected 87803 variants in 114484 reads
2012-10-07 17:14:23,247 - DEBUG - Detected 94443 variants in 107950 reads
2012-10-07 17:14:23,741 - DEBUG - Detected 99803 variants in 103443 reads
2012-10-07 17:14:24,246 - DEBUG - Detected 105693 variants in 119393 reads
2012-10-07 17:14:24,825 - DEBUG - Detected 109805 variants in 108244 reads
2012-10-07 17:14:25,388 - DEBUG - Detected 114730 variants in 109374 reads
2012-10-07 17:14:25,989 - DEBUG - Detected 119744 variants in 120597 reads
2012-10-07 17:14:26,624 - DEBUG - Detected 127700 variants in 129797 reads
2012-10-07 17:14:27,267 - DEBUG - Detected 132290 variants in 99666 reads
2012-10-07 17:14:28,007 - DEBUG - Detected 136655 variants in 122546 reads
2012-10-07 17:14:28,689 - DEBUG - Detected 141183 variants in 118168 reads
2012-10-07 17:14:29,405 - DEBUG - Detected 145932 variants in 105080 reads
2012-10-07 17:14:30,118 - DEBUG - Detected 150600 variants in 101657 reads
2012-10-07 17:14:31,590 - DEBUG - Taking top 8 variants by coverage in window 9:48006980-48006981
2012-10-07 17:14:31,712 - DEBUG - Taking top 8 variants by coverage in window 9:48007438-48007441
2012-10-07 17:14:31,781 - DEBUG - Taking top 8 variants by coverage in window 9:48008176-48008177
2012-10-07 17:14:32,279 - DEBUG - Taking top 8 variants by coverage in window 9:48013970-48013971
2012-10-07 17:14:32,464 - DEBUG - Taking top 8 variants by coverage in window 9:48015209-48015210
2012-10-07 17:14:32,489 - DEBUG - Taking top 8 variants by coverage in window 9:48015235-48015236
2012-10-07 17:14:32,656 - DEBUG - Taking top 8 variants by coverage in window 9:48015743-48015749
2012-10-07 17:14:32,737 - DEBUG - Taking top 8 variants by coverage in window 9:48015769-48015770
2012-10-07 17:14:32,875 - DEBUG - Taking top 8 variants by coverage in window 9:48015771-48015773
2012-10-07 17:14:33,416 - DEBUG - Taking top 8 variants by coverage in window 9:48015813-48015815
2012-10-07 17:14:33,791 - DEBUG - Taking top 8 variants by coverage in window 9:48015849-48015853
2012-10-07 17:14:34,169 - DEBUG - Taking top 8 variants by coverage in window 9:48015857-48015861
2012-10-07 17:14:34,485 - DEBUG - Taking top 8 variants by coverage in window 9:48015869-48015870
2012-10-07 17:14:35,194 - DEBUG - Taking top 8 variants by coverage in window 9:48016001-48016003
2012-10-07 17:14:35,273 - DEBUG - Taking top 8 variants by coverage in window 9:48016009-48016010
2012-10-07 17:14:35,865 - DEBUG - Taking top 8 variants by coverage in window 9:48024926-48024927
2012-10-07 17:14:35,934 - DEBUG - Taking top 8 variants by coverage in window 9:48025530-48025532
2012-10-07 17:14:35,962 - DEBUG - Taking top 8 variants by coverage in window 9:48025542-48025544
2012-10-07 17:14:36,074 - DEBUG - Taking top 8 variants by coverage in window 9:48025582-48025583
2012-10-07 17:14:36,840 - DEBUG - Taking top 8 variants by coverage in window 9:48037354-48037355
2012-10-07 17:14:37,295 - DEBUG - Taking top 8 variants by coverage in window 9:48046137-48046144
2012-10-07 17:14:37,784 - DEBUG - Taking top 8 variants by coverage in window 9:48056314-48056316
2012-10-07 17:14:37,933 - DEBUG - Taking top 8 variants by coverage in window 9:48056668-48056670
2012-10-07 17:14:38,196 - DEBUG - Taking top 8 variants by coverage in window 9:48061863-48061864
2012-10-07 17:14:38,621 - DEBUG - Taking top 8 variants by coverage in window 9:48066406-48066408
2012-10-07 17:14:38,660 - DEBUG - Taking top 8 variants by coverage in window 9:48066409-48066411
2012-10-07 17:14:38,897 - DEBUG - Taking top 8 variants by coverage in window 9:48072166-48072167
2012-10-07 17:14:40,668 - DEBUG - Taking top 8 variants by coverage in window 9:48106397-48106398
2012-10-07 17:14:40,994 - DEBUG - Taking top 8 variants by coverage in window 9:48115877-48115878
2012-10-07 17:14:41,019 - DEBUG - Taking top 8 variants by coverage in window 9:48115917-48115918
2012-10-07 17:14:41,333 - DEBUG - Taking top 8 variants by coverage in window 9:48123332-48123333
2012-10-07 17:14:42,523 - DEBUG - Taking top 8 variants by coverage in window 9:48141677-48141678
2012-10-07 17:14:42,600 - DEBUG - Taking top 8 variants by coverage in window 9:48142044-48142061
2012-10-07 17:14:42,796 - DEBUG - Taking top 8 variants by coverage in window 9:48143427-48143428
2012-10-07 17:14:43,343 - DEBUG - Taking top 8 variants by coverage in window 9:48150409-48150412
2012-10-07 17:14:43,495 - DEBUG - Taking top 8 variants by coverage in window 9:48150453-48150454
2012-10-07 17:14:44,072 - DEBUG - Taking top 8 variants by coverage in window 9:48161291-48161292
2012-10-07 17:14:44,379 - DEBUG - Taking top 8 variants by coverage in window 9:48166746-48166750
2012-10-07 17:14:44,397 - DEBUG - Taking top 8 variants by coverage in window 9:48166754-48166755
2012-10-07 17:14:44,654 - DEBUG - Taking top 8 variants by coverage in window 9:48168353-48168354
2012-10-07 17:14:44,669 - DEBUG - Taking top 8 variants by coverage in window 9:48168357-48168358
2012-10-07 17:14:44,949 - DEBUG - Taking top 8 variants by coverage in window 9:48168751-48168753
2012-10-07 17:14:45,088 - DEBUG - Taking top 8 variants by coverage in window 9:48168777-48168785
2012-10-07 17:14:45,242 - DEBUG - Taking top 8 variants by coverage in window 9:48170432-48170433
2012-10-07 17:14:45,540 - DEBUG - Taking top 8 variants by coverage in window 9:48172535-48172536
2012-10-07 17:14:45,720 - DEBUG - Taking top 8 variants by coverage in window 9:48174271-48174272
2012-10-07 17:14:45,976 - DEBUG - Taking top 8 variants by coverage in window 9:48176437-48176444
2012-10-07 17:14:47,265 - DEBUG - Taking top 8 variants by coverage in window 9:48198668-48198673
2012-10-07 17:14:47,592 - DEBUG - Taking top 8 variants by coverage in window 9:48198674-48198678
2012-10-07 17:14:48,276 - DEBUG - Taking top 8 variants by coverage in window 9:48198852-48198859
2012-10-07 17:14:48,935 - DEBUG - Taking top 8 variants by coverage in window 9:48201936-48201949
2012-10-07 17:14:49,418 - DEBUG - Taking top 8 variants by coverage in window 9:48209449-48209450
2012-10-07 17:14:49,429 - DEBUG - Taking top 8 variants by coverage in window 9:48209450-48209451
2012-10-07 17:14:49,952 - DEBUG - Taking top 8 variants by coverage in window 9:48214475-48214476
2012-10-07 17:14:49,977 - DEBUG - Taking top 8 variants by coverage in window 9:48214499-48214500
2012-10-07 17:14:50,096 - DEBUG - Taking top 8 variants by coverage in window 9:48216372-48216374
2012-10-07 17:14:50,348 - DEBUG - Taking top 8 variants by coverage in window 9:48220623-48220624
2012-10-07 17:14:50,637 - DEBUG - Taking top 8 variants by coverage in window 9:48223448-48223449
2012-10-07 17:14:51,027 - DEBUG - Taking top 8 variants by coverage in window 9:48230284-48230289
2012-10-07 17:14:52,008 - DEBUG - Taking top 8 variants by coverage in window 9:48246193-48246194
2012-10-07 17:14:52,502 - DEBUG - Taking top 8 variants by coverage in window 9:48248944-48248945
2012-10-07 17:14:52,890 - DEBUG - Taking top 8 variants by coverage in window 9:48251609-48251611
2012-10-07 17:14:53,407 - DEBUG - Taking top 8 variants by coverage in window 9:48258360-48258361
2012-10-07 17:14:53,586 - DEBUG - Taking top 8 variants by coverage in window 9:48260910-48260911
2012-10-07 17:14:54,799 - DEBUG - Taking top 8 variants by coverage in window 9:48271481-48271482
2012-10-07 17:14:55,090 - DEBUG - Taking top 8 variants by coverage in window 9:48273274-48273282
2012-10-07 17:14:55,237 - DEBUG - Taking top 8 variants by coverage in window 9:48274452-48274453
2012-10-07 17:14:55,640 - DEBUG - Taking top 8 variants by coverage in window 9:48278683-48278685
2012-10-07 17:14:55,771 - DEBUG - Taking top 8 variants by coverage in window 9:48279014-48279015
2012-10-07 17:14:56,112 - DEBUG - Taking top 8 variants by coverage in window 9:48284301-48284302
2012-10-07 17:14:56,549 - DEBUG - Taking top 8 variants by coverage in window 9:48295204-48295216
2012-10-07 17:14:57,581 - DEBUG - Taking top 8 variants by coverage in window 9:48313762-48313767
2012-10-07 17:14:58,123 - DEBUG - Taking top 8 variants by coverage in window 9:48320456-48320457
2012-10-07 17:14:58,132 - DEBUG - Taking top 8 variants by coverage in window 9:48320467-48320468
2012-10-07 17:14:58,603 - DEBUG - Taking top 8 variants by coverage in window 9:48324221-48324224
2012-10-07 17:14:59,034 - DEBUG - Taking top 8 variants by coverage in window 9:48326707-48326714
2012-10-07 17:14:59,118 - DEBUG - Taking top 8 variants by coverage in window 9:48326724-48326725
2012-10-07 17:14:59,158 - DEBUG - Taking top 8 variants by coverage in window 9:48326732-48326733
2012-10-07 17:14:59,931 - DEBUG - Taking top 8 variants by coverage in window 9:48331940-48331941
2012-10-07 17:15:00,384 - DEBUG - Taking top 8 variants by coverage in window 9:48335251-48335253
2012-10-07 17:15:00,870 - DEBUG - Taking top 8 variants by coverage in window 9:48340969-48340971
2012-10-07 17:15:00,897 - DEBUG - Taking top 8 variants by coverage in window 9:48340976-48340977
2012-10-07 17:15:00,928 - DEBUG - Taking top 8 variants by coverage in window 9:48341152-48341153
2012-10-07 17:15:01,071 - DEBUG - Taking top 8 variants by coverage in window 9:48341207-48341210
2012-10-07 17:15:01,516 - DEBUG - Taking top 8 variants by coverage in window 9:48341359-48341361
2012-10-07 17:15:01,559 - DEBUG - Taking top 8 variants by coverage in window 9:48341373-48341379
2012-10-07 17:15:01,610 - DEBUG - Taking top 8 variants by coverage in window 9:48341391-48341393
2012-10-07 17:15:01,827 - DEBUG - Taking top 8 variants by coverage in window 9:48342995-48342996
2012-10-07 17:15:02,642 - DEBUG - Taking top 8 variants by coverage in window 9:48355154-48355158
2012-10-07 17:15:02,782 - DEBUG - Taking top 8 variants by coverage in window 9:48356189-48356190
2012-10-07 17:15:03,279 - DEBUG - Taking top 8 variants by coverage in window 9:48360307-48360308
2012-10-07 17:15:03,513 - DEBUG - Taking top 8 variants by coverage in window 9:48362444-48362445
2012-10-07 17:15:03,944 - DEBUG - Taking top 8 variants by coverage in window 9:48365635-48365636
2012-10-07 17:15:04,017 - DEBUG - Taking top 8 variants by coverage in window 9:48365936-48365951
2012-10-07 17:15:04,105 - DEBUG - Taking top 8 variants by coverage in window 9:48366213-48366215
2012-10-07 17:15:04,117 - DEBUG - Taking top 8 variants by coverage in window 9:48366216-48366220
2012-10-07 17:15:04,520 - DEBUG - Taking top 8 variants by coverage in window 9:48368284-48368289
2012-10-07 17:15:05,801 - DEBUG - Taking top 8 variants by coverage in window 9:48383408-48383409
2012-10-07 17:15:05,918 - DEBUG - Taking top 8 variants by coverage in window 9:48384341-48384342
2012-10-07 17:15:06,437 - DEBUG - Taking top 8 variants by coverage in window 9:48389976-48389984
2012-10-07 17:15:07,286 - DEBUG - Taking top 8 variants by coverage in window 9:48392212-48392213
2012-10-07 17:15:08,317 - DEBUG - Taking top 8 variants by coverage in window 9:48402383-48402384
2012-10-07 17:15:08,353 - DEBUG - Taking top 8 variants by coverage in window 9:48402547-48402548
2012-10-07 17:15:08,640 - DEBUG - Taking top 8 variants by coverage in window 9:48404029-48404030
2012-10-07 17:15:08,828 - DEBUG - Taking top 8 variants by coverage in window 9:48406596-48406615
2012-10-07 17:15:09,437 - DEBUG - Taking top 8 variants by coverage in window 9:48410229-48410230
2012-10-07 17:15:10,496 - DEBUG - Taking top 8 variants by coverage in window 9:48421129-48421130
2012-10-07 17:15:10,642 - DEBUG - Taking top 8 variants by coverage in window 9:48421358-48421362
2012-10-07 17:15:10,683 - DEBUG - Taking top 8 variants by coverage in window 9:48421371-48421372
2012-10-07 17:15:11,114 - DEBUG - Taking top 8 variants by coverage in window 9:48425039-48425051
2012-10-07 17:15:11,322 - DEBUG - Taking top 8 variants by coverage in window 9:48427245-48427246
2012-10-07 17:15:11,954 - DEBUG - Taking top 8 variants by coverage in window 9:48433534-48433535
2012-10-07 17:15:13,737 - DEBUG - Taking top 8 variants by coverage in window 9:48446665-48446666
2012-10-07 17:15:13,871 - DEBUG - Taking top 8 variants by coverage in window 9:48447104-48447106
2012-10-07 17:15:13,964 - DEBUG - Taking top 8 variants by coverage in window 9:48447203-48447204
2012-10-07 17:15:14,397 - DEBUG - Taking top 8 variants by coverage in window 9:48450231-48450232
2012-10-07 17:15:16,028 - DEBUG - Taking top 8 variants by coverage in window 9:48468242-48468244
2012-10-07 17:15:16,207 - DEBUG - Taking top 8 variants by coverage in window 9:48469763-48469764
2012-10-07 17:15:17,669 - DEBUG - Taking top 8 variants by coverage in window 9:48488143-48488155
2012-10-07 17:15:18,460 - DEBUG - Taking top 8 variants by coverage in window 9:48497611-48497612
2012-10-07 17:15:19,088 - DEBUG - Taking top 8 variants by coverage in window 9:48506992-48506993
2012-10-07 17:15:19,257 - DEBUG - Taking top 8 variants by coverage in window 9:48509930-48509932
2012-10-07 17:15:20,060 - DEBUG - Taking top 8 variants by coverage in window 9:48520794-48520796
2012-10-07 17:15:20,076 - DEBUG - Taking top 8 variants by coverage in window 9:48520828-48520829
2012-10-07 17:15:20,357 - DEBUG - Taking top 8 variants by coverage in window 9:48524696-48524697
2012-10-07 17:15:20,860 - DEBUG - Taking top 8 variants by coverage in window 9:48530341-48530342
2012-10-07 17:15:20,874 - DEBUG - Taking top 8 variants by coverage in window 9:48530346-48530347
2012-10-07 17:15:20,901 - DEBUG - Taking top 8 variants by coverage in window 9:48530361-48530362
2012-10-07 17:15:21,114 - DEBUG - Taking top 8 variants by coverage in window 9:48533225-48533241
2012-10-07 17:15:21,196 - DEBUG - Taking top 8 variants by coverage in window 9:48533388-48533397
2012-10-07 17:15:21,259 - DEBUG - Taking top 8 variants by coverage in window 9:48533412-48533413
2012-10-07 17:15:21,296 - DEBUG - Taking top 8 variants by coverage in window 9:48533419-48533423
2012-10-07 17:15:21,429 - DEBUG - Taking top 8 variants by coverage in window 9:48534011-48534012
2012-10-07 17:15:22,283 - DEBUG - Taking top 8 variants by coverage in window 9:48548873-48548879
2012-10-07 17:15:22,678 - DEBUG - Taking top 8 variants by coverage in window 9:48553506-48553507
2012-10-07 17:15:23,190 - DEBUG - Taking top 8 variants by coverage in window 9:48561599-48561600
2012-10-07 17:15:25,438 - DEBUG - Taking top 8 variants by coverage in window 9:48593304-48593309
2012-10-07 17:15:25,574 - DEBUG - Taking top 8 variants by coverage in window 9:48593854-48593858
2012-10-07 17:15:25,617 - DEBUG - Taking top 8 variants by coverage in window 9:48593903-48593904
2012-10-07 17:15:26,279 - DEBUG - Taking top 8 variants by coverage in window 9:48598298-48598299
2012-10-07 17:15:27,327 - DEBUG - Taking top 8 variants by coverage in window 9:48612738-48612751
2012-10-07 17:15:27,429 - DEBUG - Taking top 8 variants by coverage in window 9:48613935-48613936
2012-10-07 17:15:27,546 - DEBUG - Taking top 8 variants by coverage in window 9:48615372-48615379
2012-10-07 17:15:27,602 - DEBUG - Taking top 8 variants by coverage in window 9:48615444-48615445
2012-10-07 17:15:27,917 - DEBUG - Taking top 8 variants by coverage in window 9:48615542-48615543
2012-10-07 17:15:28,347 - DEBUG - Taking top 8 variants by coverage in window 9:48619509-48619514
2012-10-07 17:15:28,361 - DEBUG - Taking top 8 variants by coverage in window 9:48619517-48619522
2012-10-07 17:15:29,330 - DEBUG - Taking top 8 variants by coverage in window 9:48634128-48634129
2012-10-07 17:15:31,203 - DEBUG - Taking top 8 variants by coverage in window 9:48654776-48654779
2012-10-07 17:15:31,258 - DEBUG - Taking top 8 variants by coverage in window 9:48654783-48654784
2012-10-07 17:15:32,544 - DEBUG - Taking top 8 variants by coverage in window 9:48667757-48667766
2012-10-07 17:15:32,965 - DEBUG - Taking top 8 variants by coverage in window 9:48670881-48670882
2012-10-07 17:15:33,010 - DEBUG - Taking top 8 variants by coverage in window 9:48670939-48670940
2012-10-07 17:15:33,491 - DEBUG - Taking top 8 variants by coverage in window 9:48675788-48675789
2012-10-07 17:15:33,500 - DEBUG - Taking top 8 variants by coverage in window 9:48675795-48675796
2012-10-07 17:15:33,888 - DEBUG - Taking top 8 variants by coverage in window 9:48679078-48679079
2012-10-07 17:15:34,317 - DEBUG - Taking top 8 variants by coverage in window 9:48681775-48681776
2012-10-07 17:15:35,010 - DEBUG - Taking top 8 variants by coverage in window 9:48690189-48690195
2012-10-07 17:15:35,106 - DEBUG - Taking top 8 variants by coverage in window 9:48690924-48690925
2012-10-07 17:15:35,290 - DEBUG - Taking top 8 variants by coverage in window 9:48692855-48692863
2012-10-07 17:15:35,620 - DEBUG - Taking top 8 variants by coverage in window 9:48697289-48697290
2012-10-07 17:15:36,082 - DEBUG - Taking top 8 variants by coverage in window 9:48700387-48700397
2012-10-07 17:15:36,230 - DEBUG - Taking top 8 variants by coverage in window 9:48701577-48701578
2012-10-07 17:15:36,941 - DEBUG - Taking top 8 variants by coverage in window 9:48708516-48708517
2012-10-07 17:15:37,600 - DEBUG - Taking top 8 variants by coverage in window 9:48714823-48714824
2012-10-07 17:15:37,865 - DEBUG - Taking top 8 variants by coverage in window 9:48717353-48717354
2012-10-07 17:15:37,965 - DEBUG - Taking top 8 variants by coverage in window 9:48719389-48719390
2012-10-07 17:15:38,739 - DEBUG - Taking top 8 variants by coverage in window 9:48728319-48728321
2012-10-07 17:15:39,350 - DEBUG - Taking top 8 variants by coverage in window 9:48735466-48735467
2012-10-07 17:15:39,362 - DEBUG - Taking top 8 variants by coverage in window 9:48735487-48735488
2012-10-07 17:15:39,705 - DEBUG - Taking top 8 variants by coverage in window 9:48741614-48741615
2012-10-07 17:15:39,959 - DEBUG - Taking top 8 variants by coverage in window 9:48747096-48747097
2012-10-07 17:15:40,192 - DEBUG - Taking top 8 variants by coverage in window 9:48750782-48750783
2012-10-07 17:15:40,387 - DEBUG - Taking top 8 variants by coverage in window 9:48752775-48752779
2012-10-07 17:15:41,031 - DEBUG - Taking top 8 variants by coverage in window 9:48762719-48762724
2012-10-07 17:15:42,103 - DEBUG - Taking top 8 variants by coverage in window 9:48778550-48778551
2012-10-07 17:15:42,432 - DEBUG - Taking top 8 variants by coverage in window 9:48780921-48780922
2012-10-07 17:15:42,592 - DEBUG - Taking top 8 variants by coverage in window 9:48782323-48782338
2012-10-07 17:15:42,706 - DEBUG - Taking top 8 variants by coverage in window 9:48783163-48783168
2012-10-07 17:15:42,714 - DEBUG - Taking top 8 variants by coverage in window 9:48783169-48783172
2012-10-07 17:15:42,966 - DEBUG - Taking top 8 variants by coverage in window 9:48784517-48784518
2012-10-07 17:15:43,769 - DEBUG - Taking top 8 variants by coverage in window 9:48796422-48796423
2012-10-07 17:15:43,969 - DEBUG - Taking top 8 variants by coverage in window 9:48797435-48797436
2012-10-07 17:15:44,059 - DEBUG - Taking top 8 variants by coverage in window 9:48797597-48797605
2012-10-07 17:15:44,093 - DEBUG - Taking top 8 variants by coverage in window 9:48797797-48797798
2012-10-07 17:15:44,269 - DEBUG - Taking top 8 variants by coverage in window 9:48800738-48800739
2012-10-07 17:15:46,047 - DEBUG - Taking top 8 variants by coverage in window 9:48830277-48830278
2012-10-07 17:15:46,304 - DEBUG - Taking top 8 variants by coverage in window 9:48832364-48832365
2012-10-07 17:15:46,437 - DEBUG - Taking top 8 variants by coverage in window 9:48832378-48832381
2012-10-07 17:15:46,781 - DEBUG - Taking top 8 variants by coverage in window 9:48835062-48835066
2012-10-07 17:15:46,813 - DEBUG - Taking top 8 variants by coverage in window 9:48835091-48835092
2012-10-07 17:15:49,303 - DEBUG - Taking top 8 variants by coverage in window 9:48869064-48869065
2012-10-07 17:15:49,317 - DEBUG - Taking top 8 variants by coverage in window 9:48869066-48869067
2012-10-07 17:15:49,516 - DEBUG - Taking top 8 variants by coverage in window 9:48869880-48869881
2012-10-07 17:15:49,531 - DEBUG - Taking top 8 variants by coverage in window 9:48869890-48869894
2012-10-07 17:15:50,402 - DEBUG - Taking top 8 variants by coverage in window 9:48880193-48880194
2012-10-07 17:15:50,408 - DEBUG - Taking top 8 variants by coverage in window 9:48880194-48880195
2012-10-07 17:15:50,700 - DEBUG - Taking top 8 variants by coverage in window 9:48883482-48883483
2012-10-07 17:15:51,123 - DEBUG - Taking top 8 variants by coverage in window 9:48888377-48888399
2012-10-07 17:15:51,972 - DEBUG - Taking top 8 variants by coverage in window 9:48896232-48896233
2012-10-07 17:15:52,007 - DEBUG - Taking top 8 variants by coverage in window 9:48896621-48896622
2012-10-07 17:15:52,018 - DEBUG - Taking top 8 variants by coverage in window 9:48896638-48896640
2012-10-07 17:15:52,218 - DEBUG - Taking top 8 variants by coverage in window 9:48899409-48899421
2012-10-07 17:15:52,583 - DEBUG - Taking top 8 variants by coverage in window 9:48902931-48902932
2012-10-07 17:15:52,598 - DEBUG - Taking top 8 variants by coverage in window 9:48902951-48902952
2012-10-07 17:15:52,677 - DEBUG - Taking top 8 variants by coverage in window 9:48903788-48903807
2012-10-07 17:15:52,801 - DEBUG - Taking top 8 variants by coverage in window 9:48904661-48904663
2012-10-07 17:15:55,578 - DEBUG - Taking top 8 variants by coverage in window 9:48935431-48935437
2012-10-07 17:15:57,442 - DEBUG - Taking top 8 variants by coverage in window 9:48960008-48960018
2012-10-07 17:15:57,686 - DEBUG - Taking top 8 variants by coverage in window 9:48960457-48960458
2012-10-07 17:15:59,552 - DEBUG - Taking top 8 variants by coverage in window 9:48984037-48984038
2012-10-07 17:15:59,598 - DEBUG - Taking top 8 variants by coverage in window 9:48984219-48984231
2012-10-07 17:15:59,724 - DEBUG - Taking top 8 variants by coverage in window 9:48985328-48985329
2012-10-07 17:15:59,743 - DEBUG - Taking top 8 variants by coverage in window 9:48985345-48985357
2012-10-07 17:16:00,492 - DEBUG - Taking top 8 variants by coverage in window 9:48992703-48992704
2012-10-07 17:16:00,507 - DEBUG - Taking top 8 variants by coverage in window 9:48992713-48992717
2012-10-07 17:16:00,651 - DEBUG - Taking top 8 variants by coverage in window 9:48992772-48992779
2012-10-07 17:16:00,755 - DEBUG - Taking top 8 variants by coverage in window 9:48992780-48992783
2012-10-07 17:16:00,996 - DEBUG - Taking top 8 variants by coverage in window 9:48996137-48996138
2012-10-07 17:16:01,020 - DEBUG - Taking top 8 variants by coverage in window 9:48996156-48996157
2012-10-07 17:16:02,471 - DEBUG - Read 103843 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 17:16:02,724 - DEBUG - Read 111222 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 17:16:02,998 - DEBUG - Read 129061 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 17:16:03,310 - DEBUG - Read 130608 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 17:16:03,618 - DEBUG - Read 123804 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 17:16:03,881 - DEBUG - Read 117864 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 17:16:04,153 - DEBUG - Read 123952 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 17:16:04,421 - DEBUG - Read 112901 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 17:16:04,673 - DEBUG - Read 108709 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 17:16:04,944 - DEBUG - Read 108172 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 17:16:05,219 - DEBUG - Read 119396 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 17:16:05,465 - DEBUG - Read 108982 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 17:16:05,728 - DEBUG - Read 111274 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 17:16:05,984 - DEBUG - Read 120064 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 17:16:06,270 - DEBUG - Read 130985 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 17:16:06,510 - DEBUG - Read 101703 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 17:16:06,775 - DEBUG - Read 123614 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 17:16:07,049 - DEBUG - Read 119518 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 17:16:07,283 - DEBUG - Read 104756 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 17:16:07,534 - DEBUG - Read 103666 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 17:16:07,646 - DEBUG - Detected 22385 variants in 103843 reads
2012-10-07 17:16:07,821 - DEBUG - Detected 33480 variants in 111222 reads
2012-10-07 17:16:08,056 - DEBUG - Detected 42283 variants in 129061 reads
2012-10-07 17:16:08,349 - DEBUG - Detected 51217 variants in 130608 reads
2012-10-07 17:16:08,654 - DEBUG - Detected 58316 variants in 123804 reads
2012-10-07 17:16:08,984 - DEBUG - Detected 64252 variants in 117864 reads
2012-10-07 17:16:09,357 - DEBUG - Detected 77728 variants in 123952 reads
2012-10-07 17:16:09,776 - DEBUG - Detected 83169 variants in 112901 reads
2012-10-07 17:16:10,218 - DEBUG - Detected 89202 variants in 108709 reads
2012-10-07 17:16:10,717 - DEBUG - Detected 93794 variants in 108172 reads
2012-10-07 17:16:11,212 - DEBUG - Detected 99374 variants in 119396 reads
2012-10-07 17:16:11,720 - DEBUG - Detected 103687 variants in 108982 reads
2012-10-07 17:16:12,236 - DEBUG - Detected 107971 variants in 111274 reads
2012-10-07 17:16:12,796 - DEBUG - Detected 112077 variants in 120064 reads
2012-10-07 17:16:13,391 - DEBUG - Detected 119642 variants in 130985 reads
2012-10-07 17:16:14,038 - DEBUG - Detected 123488 variants in 101703 reads
2012-10-07 17:16:14,682 - DEBUG - Detected 127211 variants in 123614 reads
2012-10-07 17:16:15,337 - DEBUG - Detected 131132 variants in 119518 reads
2012-10-07 17:16:15,995 - DEBUG - Detected 135177 variants in 104756 reads
2012-10-07 17:16:16,665 - DEBUG - Detected 139500 variants in 103666 reads
2012-10-07 17:16:17,884 - DEBUG - Taking top 8 variants by coverage in window 9:49002818-49002824
2012-10-07 17:16:18,761 - DEBUG - Taking top 8 variants by coverage in window 9:49009878-49009879
2012-10-07 17:16:18,893 - DEBUG - Taking top 8 variants by coverage in window 9:49011162-49011163
2012-10-07 17:16:20,578 - DEBUG - Taking top 8 variants by coverage in window 9:49025708-49025711
2012-10-07 17:16:20,967 - DEBUG - Taking top 8 variants by coverage in window 9:49028710-49028711
2012-10-07 17:16:21,491 - DEBUG - Taking top 8 variants by coverage in window 9:49030314-49030316
2012-10-07 17:16:23,015 - DEBUG - Taking top 8 variants by coverage in window 9:49048893-49048908
2012-10-07 17:16:23,685 - DEBUG - Taking top 8 variants by coverage in window 9:49056228-49056229
2012-10-07 17:16:24,454 - DEBUG - Taking top 8 variants by coverage in window 9:49062390-49062391
2012-10-07 17:16:24,644 - DEBUG - Taking top 8 variants by coverage in window 9:49062719-49062720
2012-10-07 17:16:24,758 - DEBUG - Taking top 8 variants by coverage in window 9:49063779-49063780
2012-10-07 17:16:25,159 - DEBUG - Taking top 8 variants by coverage in window 9:49066879-49066880
2012-10-07 17:16:25,626 - DEBUG - Taking top 8 variants by coverage in window 9:49070110-49070111
2012-10-07 17:16:26,487 - DEBUG - Taking top 8 variants by coverage in window 9:49079497-49079498
2012-10-07 17:16:27,154 - DEBUG - Taking top 8 variants by coverage in window 9:49088829-49088832
2012-10-07 17:16:27,177 - DEBUG - Taking top 8 variants by coverage in window 9:49088856-49088857
2012-10-07 17:16:27,473 - DEBUG - Taking top 8 variants by coverage in window 9:49091328-49091329
2012-10-07 17:16:27,796 - DEBUG - Taking top 8 variants by coverage in window 9:49095840-49095841
2012-10-07 17:16:28,984 - DEBUG - Taking top 8 variants by coverage in window 9:49109397-49109398
2012-10-07 17:16:29,771 - DEBUG - Taking top 8 variants by coverage in window 9:49116337-49116338
2012-10-07 17:16:31,594 - DEBUG - Taking top 8 variants by coverage in window 9:49133707-49133709
2012-10-07 17:16:31,912 - DEBUG - Taking top 8 variants by coverage in window 9:49144170-49144185
2012-10-07 17:16:31,970 - DEBUG - Taking top 8 variants by coverage in window 9:49144288-49144289
2012-10-07 17:16:32,768 - DEBUG - Taking top 8 variants by coverage in window 9:49156402-49156411
2012-10-07 17:16:32,949 - DEBUG - Taking top 8 variants by coverage in window 9:49156495-49156510
2012-10-07 17:16:33,046 - DEBUG - Taking top 8 variants by coverage in window 9:49157422-49157423
2012-10-07 17:16:33,189 - DEBUG - Taking top 8 variants by coverage in window 9:49158682-49158684
2012-10-07 17:16:33,397 - DEBUG - Taking top 8 variants by coverage in window 9:49160018-49160021
2012-10-07 17:16:34,701 - DEBUG - Taking top 8 variants by coverage in window 9:49169499-49169507
2012-10-07 17:16:35,085 - DEBUG - Taking top 8 variants by coverage in window 9:49171849-49171850
2012-10-07 17:16:35,594 - DEBUG - Taking top 8 variants by coverage in window 9:49174857-49174858
2012-10-07 17:16:35,769 - DEBUG - Taking top 8 variants by coverage in window 9:49175246-49175249
2012-10-07 17:16:37,716 - DEBUG - Taking top 8 variants by coverage in window 9:49202008-49202023
2012-10-07 17:16:37,731 - DEBUG - Taking top 8 variants by coverage in window 9:49202025-49202026
2012-10-07 17:16:37,792 - DEBUG - Taking top 8 variants by coverage in window 9:49202089-49202090
2012-10-07 17:16:40,095 - DEBUG - Taking top 8 variants by coverage in window 9:49233464-49233465
2012-10-07 17:16:40,157 - DEBUG - Taking top 8 variants by coverage in window 9:49233741-49233742
2012-10-07 17:16:40,694 - DEBUG - Taking top 8 variants by coverage in window 9:49238102-49238103
2012-10-07 17:16:41,132 - DEBUG - Taking top 8 variants by coverage in window 9:49242551-49242552
2012-10-07 17:16:41,402 - DEBUG - Taking top 8 variants by coverage in window 9:49244339-49244340
2012-10-07 17:16:41,554 - DEBUG - Taking top 8 variants by coverage in window 9:49245809-49245815
2012-10-07 17:16:41,580 - DEBUG - Taking top 8 variants by coverage in window 9:49245844-49245845
2012-10-07 17:16:41,693 - DEBUG - Taking top 8 variants by coverage in window 9:49246426-49246427
2012-10-07 17:16:42,274 - DEBUG - Taking top 8 variants by coverage in window 9:49252038-49252042
2012-10-07 17:16:42,426 - DEBUG - Taking top 8 variants by coverage in window 9:49252146-49252147
2012-10-07 17:16:43,106 - DEBUG - Taking top 8 variants by coverage in window 9:49258826-49258827
2012-10-07 17:16:43,122 - DEBUG - Taking top 8 variants by coverage in window 9:49258827-49258828
2012-10-07 17:16:44,765 - DEBUG - Taking top 8 variants by coverage in window 9:49280339-49280340
2012-10-07 17:16:44,927 - DEBUG - Taking top 8 variants by coverage in window 9:49282368-49282376
2012-10-07 17:16:45,941 - DEBUG - Taking top 8 variants by coverage in window 9:49295359-49295360
2012-10-07 17:16:46,223 - DEBUG - Taking top 8 variants by coverage in window 9:49299215-49299216
2012-10-07 17:16:46,705 - DEBUG - Taking top 8 variants by coverage in window 9:49304615-49304616
2012-10-07 17:16:46,752 - DEBUG - Taking top 8 variants by coverage in window 9:49304620-49304621
2012-10-07 17:16:46,833 - DEBUG - Taking top 8 variants by coverage in window 9:49304675-49304676
2012-10-07 17:16:46,846 - DEBUG - Taking top 8 variants by coverage in window 9:49304676-49304677
2012-10-07 17:16:48,435 - DEBUG - Taking top 8 variants by coverage in window 9:49322505-49322506
2012-10-07 17:16:48,638 - DEBUG - Taking top 8 variants by coverage in window 9:49325343-49325344
2012-10-07 17:16:48,915 - DEBUG - Taking top 8 variants by coverage in window 9:49328672-49328673
2012-10-07 17:16:48,945 - DEBUG - Taking top 8 variants by coverage in window 9:49328709-49328711
2012-10-07 17:16:50,401 - DEBUG - Taking top 8 variants by coverage in window 9:49349247-49349248
2012-10-07 17:16:50,769 - DEBUG - Taking top 8 variants by coverage in window 9:49357318-49357319
2012-10-07 17:16:50,784 - DEBUG - Taking top 8 variants by coverage in window 9:49357319-49357320
2012-10-07 17:16:51,411 - DEBUG - Taking top 8 variants by coverage in window 9:49365107-49365108
2012-10-07 17:16:52,020 - DEBUG - Taking top 8 variants by coverage in window 9:49371608-49371609
2012-10-07 17:16:52,505 - DEBUG - Taking top 8 variants by coverage in window 9:49379979-49379980
2012-10-07 17:16:52,522 - DEBUG - Taking top 8 variants by coverage in window 9:49379981-49379982
2012-10-07 17:16:52,788 - DEBUG - Taking top 8 variants by coverage in window 9:49382349-49382350
2012-10-07 17:16:52,822 - DEBUG - Taking top 8 variants by coverage in window 9:49382415-49382417
2012-10-07 17:16:52,839 - DEBUG - Taking top 8 variants by coverage in window 9:49382444-49382445
2012-10-07 17:16:53,579 - DEBUG - Taking top 8 variants by coverage in window 9:49392054-49392055
2012-10-07 17:16:53,712 - DEBUG - Taking top 8 variants by coverage in window 9:49393318-49393319
2012-10-07 17:16:54,024 - DEBUG - Taking top 8 variants by coverage in window 9:49397258-49397259
2012-10-07 17:16:54,922 - DEBUG - Taking top 8 variants by coverage in window 9:49408014-49408015
2012-10-07 17:16:54,965 - DEBUG - Taking top 8 variants by coverage in window 9:49408083-49408099
2012-10-07 17:16:55,576 - DEBUG - Taking top 8 variants by coverage in window 9:49412812-49412813
2012-10-07 17:16:56,198 - DEBUG - Taking top 8 variants by coverage in window 9:49419664-49419672
2012-10-07 17:16:57,706 - DEBUG - Taking top 8 variants by coverage in window 9:49432941-49432942
2012-10-07 17:16:58,257 - DEBUG - Taking top 8 variants by coverage in window 9:49441250-49441255
2012-10-07 17:16:58,556 - DEBUG - Taking top 8 variants by coverage in window 9:49443786-49443788
2012-10-07 17:16:59,067 - DEBUG - Taking top 8 variants by coverage in window 9:49451227-49451228
2012-10-07 17:16:59,079 - DEBUG - Taking top 8 variants by coverage in window 9:49451259-49451260
2012-10-07 17:16:59,249 - DEBUG - Taking top 8 variants by coverage in window 9:49452350-49452351
2012-10-07 17:16:59,753 - DEBUG - Taking top 8 variants by coverage in window 9:49457989-49457990
2012-10-07 17:17:00,720 - DEBUG - Taking top 8 variants by coverage in window 9:49472673-49472674
2012-10-07 17:17:00,758 - DEBUG - Taking top 8 variants by coverage in window 9:49472783-49472784
2012-10-07 17:17:00,916 - DEBUG - Taking top 8 variants by coverage in window 9:49474552-49474553
2012-10-07 17:17:01,537 - DEBUG - Taking top 8 variants by coverage in window 9:49482045-49482048
2012-10-07 17:17:02,099 - DEBUG - Taking top 8 variants by coverage in window 9:49488722-49488725
2012-10-07 17:17:02,649 - DEBUG - Taking top 8 variants by coverage in window 9:49494601-49494606
2012-10-07 17:17:03,202 - DEBUG - Taking top 8 variants by coverage in window 9:49498197-49498198
2012-10-07 17:17:04,058 - DEBUG - Taking top 8 variants by coverage in window 9:49509760-49509762
2012-10-07 17:17:04,785 - DEBUG - Taking top 8 variants by coverage in window 9:49522173-49522174
2012-10-07 17:17:04,889 - DEBUG - Taking top 8 variants by coverage in window 9:49523681-49523682
2012-10-07 17:17:06,016 - DEBUG - Taking top 8 variants by coverage in window 9:49541755-49541756
2012-10-07 17:17:06,507 - DEBUG - Taking top 8 variants by coverage in window 9:49550109-49550111
2012-10-07 17:17:07,021 - DEBUG - Taking top 8 variants by coverage in window 9:49556641-49556642
2012-10-07 17:17:07,044 - DEBUG - Taking top 8 variants by coverage in window 9:49556645-49556646
2012-10-07 17:17:07,437 - DEBUG - Taking top 8 variants by coverage in window 9:49563644-49563645
2012-10-07 17:17:07,534 - DEBUG - Taking top 8 variants by coverage in window 9:49564540-49564541
2012-10-07 17:17:09,179 - DEBUG - Taking top 8 variants by coverage in window 9:49587640-49587649
2012-10-07 17:17:09,441 - DEBUG - Taking top 8 variants by coverage in window 9:49590191-49590192
2012-10-07 17:17:10,012 - DEBUG - Taking top 8 variants by coverage in window 9:49596943-49596944
2012-10-07 17:17:10,136 - DEBUG - Taking top 8 variants by coverage in window 9:49597402-49597405
2012-10-07 17:17:10,375 - DEBUG - Taking top 8 variants by coverage in window 9:49598213-49598218
2012-10-07 17:17:10,588 - DEBUG - Taking top 8 variants by coverage in window 9:49600711-49600712
2012-10-07 17:17:10,959 - DEBUG - Taking top 8 variants by coverage in window 9:49608518-49608519
2012-10-07 17:17:11,670 - DEBUG - Taking top 8 variants by coverage in window 9:49618184-49618185
2012-10-07 17:17:11,798 - DEBUG - Taking top 8 variants by coverage in window 9:49618875-49618895
2012-10-07 17:17:12,034 - DEBUG - Taking top 8 variants by coverage in window 9:49620008-49620014
2012-10-07 17:17:12,261 - DEBUG - Taking top 8 variants by coverage in window 9:49621597-49621598
2012-10-07 17:17:12,312 - DEBUG - Taking top 8 variants by coverage in window 9:49621791-49621792
2012-10-07 17:17:13,646 - DEBUG - Taking top 8 variants by coverage in window 9:49639211-49639212
2012-10-07 17:17:14,151 - DEBUG - Taking top 8 variants by coverage in window 9:49643609-49643610
2012-10-07 17:17:14,795 - DEBUG - Taking top 8 variants by coverage in window 9:49651849-49651850
2012-10-07 17:17:15,041 - DEBUG - Taking top 8 variants by coverage in window 9:49656129-49656130
2012-10-07 17:17:15,299 - DEBUG - Taking top 8 variants by coverage in window 9:49659311-49659325
2012-10-07 17:17:15,835 - DEBUG - Taking top 8 variants by coverage in window 9:49665365-49665366
2012-10-07 17:17:15,853 - DEBUG - Taking top 8 variants by coverage in window 9:49665367-49665369
2012-10-07 17:17:17,196 - DEBUG - Taking top 8 variants by coverage in window 9:49683595-49683596
2012-10-07 17:17:18,365 - DEBUG - Taking top 8 variants by coverage in window 9:49695230-49695231
2012-10-07 17:17:19,953 - DEBUG - Taking top 8 variants by coverage in window 9:49718840-49718841
2012-10-07 17:17:20,065 - DEBUG - Taking top 8 variants by coverage in window 9:49720810-49720811
2012-10-07 17:17:20,834 - DEBUG - Taking top 8 variants by coverage in window 9:49733868-49733869
2012-10-07 17:17:21,106 - DEBUG - Taking top 8 variants by coverage in window 9:49735153-49735154
2012-10-07 17:17:21,168 - DEBUG - Taking top 8 variants by coverage in window 9:49735161-49735162
2012-10-07 17:17:21,238 - DEBUG - Taking top 8 variants by coverage in window 9:49735169-49735170
2012-10-07 17:17:21,287 - DEBUG - Taking top 8 variants by coverage in window 9:49735171-49735172
2012-10-07 17:17:21,643 - DEBUG - Taking top 8 variants by coverage in window 9:49735245-49735252
2012-10-07 17:17:21,976 - DEBUG - Taking top 8 variants by coverage in window 9:49735291-49735292
2012-10-07 17:17:22,176 - DEBUG - Taking top 8 variants by coverage in window 9:49735323-49735324
2012-10-07 17:17:23,042 - DEBUG - Taking top 8 variants by coverage in window 9:49742554-49742555
2012-10-07 17:17:23,378 - DEBUG - Taking top 8 variants by coverage in window 9:49746161-49746165
2012-10-07 17:17:23,626 - DEBUG - Taking top 8 variants by coverage in window 9:49748358-49748359
2012-10-07 17:17:24,387 - DEBUG - Taking top 8 variants by coverage in window 9:49756214-49756215
2012-10-07 17:17:24,415 - DEBUG - Taking top 8 variants by coverage in window 9:49756220-49756224
2012-10-07 17:17:24,709 - DEBUG - Taking top 8 variants by coverage in window 9:49759238-49759239
2012-10-07 17:17:27,105 - DEBUG - Taking top 8 variants by coverage in window 9:49795067-49795068
2012-10-07 17:17:27,423 - DEBUG - Taking top 8 variants by coverage in window 9:49798818-49798819
2012-10-07 17:17:27,609 - DEBUG - Taking top 8 variants by coverage in window 9:49800614-49800619
2012-10-07 17:17:27,618 - DEBUG - Taking top 8 variants by coverage in window 9:49800623-49800624
2012-10-07 17:17:27,914 - DEBUG - Taking top 8 variants by coverage in window 9:49807174-49807175
2012-10-07 17:17:28,153 - DEBUG - Taking top 8 variants by coverage in window 9:49811204-49811205
2012-10-07 17:17:28,322 - DEBUG - Taking top 8 variants by coverage in window 9:49811265-49811266
2012-10-07 17:17:29,327 - DEBUG - Taking top 8 variants by coverage in window 9:49823111-49823112
2012-10-07 17:17:29,942 - DEBUG - Taking top 8 variants by coverage in window 9:49831859-49831862
2012-10-07 17:17:30,308 - DEBUG - Taking top 8 variants by coverage in window 9:49833850-49833851
2012-10-07 17:17:30,801 - DEBUG - Taking top 8 variants by coverage in window 9:49838016-49838017
2012-10-07 17:17:31,042 - DEBUG - Taking top 8 variants by coverage in window 9:49839263-49839271
2012-10-07 17:17:31,210 - DEBUG - Taking top 8 variants by coverage in window 9:49840512-49840514
2012-10-07 17:17:31,566 - DEBUG - Taking top 8 variants by coverage in window 9:49843249-49843250
2012-10-07 17:17:31,572 - DEBUG - Taking top 8 variants by coverage in window 9:49843251-49843252
2012-10-07 17:17:31,651 - DEBUG - Taking top 8 variants by coverage in window 9:49843279-49843280
2012-10-07 17:17:31,705 - DEBUG - Taking top 8 variants by coverage in window 9:49843359-49843360
2012-10-07 17:17:33,420 - DEBUG - Taking top 8 variants by coverage in window 9:49864142-49864145
2012-10-07 17:17:33,479 - DEBUG - Taking top 8 variants by coverage in window 9:49864235-49864236
2012-10-07 17:17:33,494 - DEBUG - Taking top 8 variants by coverage in window 9:49864237-49864238
2012-10-07 17:17:33,825 - DEBUG - Taking top 8 variants by coverage in window 9:49868102-49868103
2012-10-07 17:17:34,326 - DEBUG - Taking top 8 variants by coverage in window 9:49874768-49874770
2012-10-07 17:17:34,939 - DEBUG - Taking top 8 variants by coverage in window 9:49885522-49885523
2012-10-07 17:17:35,046 - DEBUG - Taking top 8 variants by coverage in window 9:49887293-49887299
2012-10-07 17:17:36,134 - DEBUG - Taking top 8 variants by coverage in window 9:49890092-49890093
2012-10-07 17:17:36,166 - DEBUG - Taking top 8 variants by coverage in window 9:49896484-49896495
2012-10-07 17:17:36,382 - DEBUG - Taking top 8 variants by coverage in window 9:49898694-49898695
2012-10-07 17:17:36,428 - DEBUG - Taking top 8 variants by coverage in window 9:49898705-49898706
2012-10-07 17:17:36,530 - DEBUG - Taking top 8 variants by coverage in window 9:49899031-49899032
2012-10-07 17:17:36,618 - DEBUG - Taking top 8 variants by coverage in window 9:49900037-49900038
2012-10-07 17:17:36,711 - DEBUG - Taking top 8 variants by coverage in window 9:49900140-49900141
2012-10-07 17:17:36,795 - DEBUG - Taking top 8 variants by coverage in window 9:49901636-49901642
2012-10-07 17:17:37,689 - DEBUG - Taking top 8 variants by coverage in window 9:49912068-49912069
2012-10-07 17:17:37,701 - DEBUG - Taking top 8 variants by coverage in window 9:49912069-49912075
2012-10-07 17:17:38,002 - DEBUG - Taking top 8 variants by coverage in window 9:49913750-49913751
2012-10-07 17:17:38,031 - DEBUG - Taking top 8 variants by coverage in window 9:49913832-49913835
2012-10-07 17:17:38,829 - DEBUG - Taking top 8 variants by coverage in window 9:49924946-49924947
2012-10-07 17:17:38,910 - DEBUG - Taking top 8 variants by coverage in window 9:49925293-49925294
2012-10-07 17:17:39,426 - DEBUG - Taking top 8 variants by coverage in window 9:49933819-49933820
2012-10-07 17:17:39,469 - DEBUG - Taking top 8 variants by coverage in window 9:49933876-49933877
2012-10-07 17:17:39,946 - DEBUG - Taking top 8 variants by coverage in window 9:49938533-49938541
2012-10-07 17:17:40,160 - DEBUG - Taking top 8 variants by coverage in window 9:49940518-49940524
2012-10-07 17:17:40,477 - DEBUG - Taking top 8 variants by coverage in window 9:49943868-49943869
2012-10-07 17:17:40,653 - DEBUG - Taking top 8 variants by coverage in window 9:49945873-49945877
2012-10-07 17:17:41,051 - DEBUG - Taking top 8 variants by coverage in window 9:49952542-49952543
2012-10-07 17:17:41,254 - DEBUG - Taking top 8 variants by coverage in window 9:49955257-49955261
2012-10-07 17:17:41,287 - DEBUG - Taking top 8 variants by coverage in window 9:49955322-49955323
2012-10-07 17:17:41,550 - DEBUG - Taking top 8 variants by coverage in window 9:49960963-49960964
2012-10-07 17:17:41,816 - DEBUG - Taking top 8 variants by coverage in window 9:49968215-49968216
2012-10-07 17:17:43,016 - DEBUG - Taking top 8 variants by coverage in window 9:49986582-49986588
2012-10-07 17:17:43,075 - DEBUG - Taking top 8 variants by coverage in window 9:49986641-49986642
2012-10-07 17:17:43,445 - DEBUG - Taking top 8 variants by coverage in window 9:49990409-49990414
2012-10-07 17:17:44,121 - DEBUG - Taking top 8 variants by coverage in window 9:49996542-49996543
2012-10-07 17:17:44,132 - DEBUG - Taking top 8 variants by coverage in window 9:49996615-49996616
2012-10-07 17:17:44,335 - DEBUG - Taking top 8 variants by coverage in window 9:49999984-49999985
2012-10-07 17:17:45,348 - DEBUG - Read 99979 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 17:17:45,611 - DEBUG - Read 108186 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 17:17:45,894 - DEBUG - Read 124708 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 17:17:46,210 - DEBUG - Read 126128 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 17:17:46,513 - DEBUG - Read 118933 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 17:17:46,788 - DEBUG - Read 112761 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 17:17:47,074 - DEBUG - Read 119663 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 17:17:47,352 - DEBUG - Read 110135 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 17:17:47,611 - DEBUG - Read 104454 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 17:17:47,871 - DEBUG - Read 103167 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 17:17:48,166 - DEBUG - Read 117426 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 17:17:48,417 - DEBUG - Read 103659 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 17:17:48,679 - DEBUG - Read 105467 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 17:17:48,945 - DEBUG - Read 116090 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 17:17:49,243 - DEBUG - Read 126581 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 17:17:49,492 - DEBUG - Read 96315 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 17:17:49,824 - DEBUG - Read 121441 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 17:17:50,104 - DEBUG - Read 115463 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 17:17:50,404 - DEBUG - Read 101138 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 17:17:50,661 - DEBUG - Read 99903 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 17:17:50,769 - DEBUG - Detected 20723 variants in 99979 reads
2012-10-07 17:17:50,942 - DEBUG - Detected 31873 variants in 108186 reads
2012-10-07 17:17:51,176 - DEBUG - Detected 41304 variants in 124708 reads
2012-10-07 17:17:51,446 - DEBUG - Detected 50007 variants in 126128 reads
2012-10-07 17:17:51,748 - DEBUG - Detected 56992 variants in 118933 reads
2012-10-07 17:17:52,097 - DEBUG - Detected 63800 variants in 112761 reads
2012-10-07 17:17:52,478 - DEBUG - Detected 77360 variants in 119663 reads
2012-10-07 17:17:52,910 - DEBUG - Detected 82579 variants in 110135 reads
2012-10-07 17:17:53,367 - DEBUG - Detected 88583 variants in 104454 reads
2012-10-07 17:17:53,847 - DEBUG - Detected 93734 variants in 103167 reads
2012-10-07 17:17:54,369 - DEBUG - Detected 98968 variants in 117426 reads
2012-10-07 17:17:54,936 - DEBUG - Detected 102852 variants in 103659 reads
2012-10-07 17:17:55,485 - DEBUG - Detected 107623 variants in 105467 reads
2012-10-07 17:17:56,076 - DEBUG - Detected 112057 variants in 116090 reads
2012-10-07 17:17:56,703 - DEBUG - Detected 119710 variants in 126581 reads
2012-10-07 17:17:57,349 - DEBUG - Detected 123929 variants in 96315 reads
2012-10-07 17:17:58,076 - DEBUG - Detected 127714 variants in 121441 reads
2012-10-07 17:17:58,772 - DEBUG - Detected 132026 variants in 115463 reads
2012-10-07 17:17:59,472 - DEBUG - Detected 136371 variants in 101138 reads
2012-10-07 17:18:00,188 - DEBUG - Detected 140651 variants in 99903 reads
2012-10-07 17:18:01,199 - DEBUG - Taking top 8 variants by coverage in window 9:50000001-50000003
2012-10-07 17:18:01,235 - DEBUG - Taking top 8 variants by coverage in window 9:50000021-50000022
2012-10-07 17:18:01,460 - DEBUG - Taking top 8 variants by coverage in window 9:50001851-50001852
2012-10-07 17:18:01,535 - DEBUG - Taking top 8 variants by coverage in window 9:50002807-50002808
2012-10-07 17:18:01,876 - DEBUG - Taking top 8 variants by coverage in window 9:50005439-50005440
2012-10-07 17:18:02,596 - DEBUG - Taking top 8 variants by coverage in window 9:50012453-50012455
2012-10-07 17:18:02,633 - DEBUG - Taking top 8 variants by coverage in window 9:50012481-50012482
2012-10-07 17:18:03,988 - DEBUG - Taking top 8 variants by coverage in window 9:50025521-50025531
2012-10-07 17:18:04,321 - DEBUG - Taking top 8 variants by coverage in window 9:50029939-50029940
2012-10-07 17:18:04,607 - DEBUG - Taking top 8 variants by coverage in window 9:50032739-50032740
2012-10-07 17:18:05,949 - DEBUG - Taking top 8 variants by coverage in window 9:50046429-50046430
2012-10-07 17:18:06,126 - DEBUG - Taking top 8 variants by coverage in window 9:50049970-50049971
2012-10-07 17:18:06,365 - DEBUG - Taking top 8 variants by coverage in window 9:50054443-50054444
2012-10-07 17:18:06,665 - DEBUG - Taking top 8 variants by coverage in window 9:50059237-50059238
2012-10-07 17:18:06,689 - DEBUG - Taking top 8 variants by coverage in window 9:50059285-50059286
2012-10-07 17:18:06,701 - DEBUG - Taking top 8 variants by coverage in window 9:50059289-50059294
2012-10-07 17:18:07,277 - DEBUG - Taking top 8 variants by coverage in window 9:50063841-50063842
2012-10-07 17:18:07,512 - DEBUG - Taking top 8 variants by coverage in window 9:50067491-50067493
2012-10-07 17:18:08,036 - DEBUG - Taking top 8 variants by coverage in window 9:50073289-50073290
2012-10-07 17:18:08,394 - DEBUG - Taking top 8 variants by coverage in window 9:50076417-50076418
2012-10-07 17:18:08,536 - DEBUG - Taking top 8 variants by coverage in window 9:50079116-50079118
2012-10-07 17:18:08,665 - DEBUG - Taking top 8 variants by coverage in window 9:50079186-50079187
2012-10-07 17:18:10,110 - DEBUG - Taking top 8 variants by coverage in window 9:50099776-50099777
2012-10-07 17:18:10,251 - DEBUG - Taking top 8 variants by coverage in window 9:50103205-50103210
2012-10-07 17:18:10,594 - DEBUG - Taking top 8 variants by coverage in window 9:50107326-50107328
2012-10-07 17:18:10,605 - DEBUG - Taking top 8 variants by coverage in window 9:50107329-50107336
2012-10-07 17:18:11,979 - DEBUG - Taking top 8 variants by coverage in window 9:50107636-50107637
2012-10-07 17:18:12,423 - DEBUG - Taking top 8 variants by coverage in window 9:50116277-50116278
2012-10-07 17:18:12,898 - DEBUG - Taking top 8 variants by coverage in window 9:50124327-50124330
2012-10-07 17:18:13,155 - DEBUG - Taking top 8 variants by coverage in window 9:50128693-50128694
2012-10-07 17:18:13,212 - DEBUG - Taking top 8 variants by coverage in window 9:50129475-50129476
2012-10-07 17:18:13,923 - DEBUG - Taking top 8 variants by coverage in window 9:50139799-50139800
2012-10-07 17:18:13,930 - DEBUG - Taking top 8 variants by coverage in window 9:50139804-50139805
2012-10-07 17:18:14,607 - DEBUG - Taking top 8 variants by coverage in window 9:50144707-50144708
2012-10-07 17:18:15,182 - DEBUG - Taking top 8 variants by coverage in window 9:50148699-50148700
2012-10-07 17:18:15,657 - DEBUG - Taking top 8 variants by coverage in window 9:50152304-50152305
2012-10-07 17:18:16,888 - DEBUG - Taking top 8 variants by coverage in window 9:50165997-50166007
2012-10-07 17:18:17,723 - DEBUG - Taking top 8 variants by coverage in window 9:50169282-50169290
2012-10-07 17:18:18,445 - DEBUG - Taking top 8 variants by coverage in window 9:50175169-50175170
2012-10-07 17:18:18,534 - DEBUG - Taking top 8 variants by coverage in window 9:50175642-50175654
2012-10-07 17:18:18,561 - DEBUG - Taking top 8 variants by coverage in window 9:50175658-50175659
2012-10-07 17:18:18,579 - DEBUG - Taking top 8 variants by coverage in window 9:50175662-50175663
2012-10-07 17:18:18,642 - DEBUG - Taking top 8 variants by coverage in window 9:50175664-50175665
2012-10-07 17:18:18,723 - DEBUG - Taking top 8 variants by coverage in window 9:50175786-50175796
2012-10-07 17:18:18,929 - DEBUG - Taking top 8 variants by coverage in window 9:50177849-50177850
2012-10-07 17:18:18,949 - DEBUG - Taking top 8 variants by coverage in window 9:50177858-50177859
2012-10-07 17:18:19,003 - DEBUG - Taking top 8 variants by coverage in window 9:50178013-50178014
2012-10-07 17:18:19,827 - DEBUG - Taking top 8 variants by coverage in window 9:50185491-50185499
2012-10-07 17:18:19,916 - DEBUG - Taking top 8 variants by coverage in window 9:50185503-50185507
2012-10-07 17:18:21,127 - DEBUG - Taking top 8 variants by coverage in window 9:50185955-50185956
2012-10-07 17:18:22,093 - DEBUG - Taking top 8 variants by coverage in window 9:50196309-50196310
2012-10-07 17:18:22,530 - DEBUG - Taking top 8 variants by coverage in window 9:50200473-50200475
2012-10-07 17:18:22,553 - DEBUG - Taking top 8 variants by coverage in window 9:50202360-50202361
2012-10-07 17:18:22,810 - DEBUG - Taking top 8 variants by coverage in window 9:50203833-50203839
2012-10-07 17:18:22,872 - DEBUG - Taking top 8 variants by coverage in window 9:50203845-50203848
2012-10-07 17:18:22,899 - DEBUG - Taking top 8 variants by coverage in window 9:50203851-50203854
2012-10-07 17:18:22,978 - DEBUG - Taking top 8 variants by coverage in window 9:50203855-50203857
2012-10-07 17:18:23,962 - DEBUG - Taking top 8 variants by coverage in window 9:50208874-50208875
2012-10-07 17:18:25,665 - DEBUG - Taking top 8 variants by coverage in window 9:50224345-50224347
2012-10-07 17:18:25,819 - DEBUG - Taking top 8 variants by coverage in window 9:50228212-50228213
2012-10-07 17:18:26,122 - DEBUG - Taking top 8 variants by coverage in window 9:50230986-50230987
2012-10-07 17:18:26,269 - DEBUG - Taking top 8 variants by coverage in window 9:50231006-50231010
2012-10-07 17:18:26,844 - DEBUG - Taking top 8 variants by coverage in window 9:50231047-50231049
2012-10-07 17:18:26,889 - DEBUG - Taking top 8 variants by coverage in window 9:50231051-50231057
2012-10-07 17:18:27,087 - DEBUG - Taking top 8 variants by coverage in window 9:50231146-50231147
2012-10-07 17:18:27,543 - DEBUG - Taking top 8 variants by coverage in window 9:50235051-50235052
2012-10-07 17:18:27,561 - DEBUG - Taking top 8 variants by coverage in window 9:50235080-50235081
2012-10-07 17:18:28,137 - DEBUG - Taking top 8 variants by coverage in window 9:50239597-50239598
2012-10-07 17:18:28,183 - DEBUG - Taking top 8 variants by coverage in window 9:50239730-50239731
2012-10-07 17:18:28,881 - DEBUG - Taking top 8 variants by coverage in window 9:50245116-50245120
2012-10-07 17:18:29,237 - DEBUG - Taking top 8 variants by coverage in window 9:50248013-50248014
2012-10-07 17:18:29,312 - DEBUG - Taking top 8 variants by coverage in window 9:50248617-50248618
2012-10-07 17:18:29,637 - DEBUG - Taking top 8 variants by coverage in window 9:50252651-50252652
2012-10-07 17:18:30,330 - DEBUG - Taking top 8 variants by coverage in window 9:50258143-50258144
2012-10-07 17:18:30,400 - DEBUG - Taking top 8 variants by coverage in window 9:50258834-50258835
2012-10-07 17:18:30,830 - DEBUG - Taking top 8 variants by coverage in window 9:50262540-50262541
2012-10-07 17:18:31,083 - DEBUG - Taking top 8 variants by coverage in window 9:50264304-50264309
2012-10-07 17:18:31,301 - DEBUG - Taking top 8 variants by coverage in window 9:50264343-50264344
2012-10-07 17:18:31,700 - DEBUG - Taking top 8 variants by coverage in window 9:50270188-50270190
2012-10-07 17:18:32,226 - DEBUG - Taking top 8 variants by coverage in window 9:50272573-50272579
2012-10-07 17:18:32,828 - DEBUG - Taking top 8 variants by coverage in window 9:50279379-50279380
2012-10-07 17:18:33,760 - DEBUG - Taking top 8 variants by coverage in window 9:50290602-50290603
2012-10-07 17:18:34,023 - DEBUG - Taking top 8 variants by coverage in window 9:50292902-50292904
2012-10-07 17:18:34,532 - DEBUG - Taking top 8 variants by coverage in window 9:50298157-50298158
2012-10-07 17:18:34,947 - DEBUG - Taking top 8 variants by coverage in window 9:50301768-50301769
2012-10-07 17:18:34,972 - DEBUG - Taking top 8 variants by coverage in window 9:50301773-50301775
2012-10-07 17:18:35,118 - DEBUG - Taking top 8 variants by coverage in window 9:50302027-50302028
2012-10-07 17:18:35,724 - DEBUG - Taking top 8 variants by coverage in window 9:50310314-50310320
2012-10-07 17:18:35,918 - DEBUG - Taking top 8 variants by coverage in window 9:50311094-50311095
2012-10-07 17:18:36,341 - DEBUG - Taking top 8 variants by coverage in window 9:50319468-50319469
2012-10-07 17:18:36,389 - DEBUG - Taking top 8 variants by coverage in window 9:50319507-50319508
2012-10-07 17:18:37,244 - DEBUG - Taking top 8 variants by coverage in window 9:50330256-50330260
2012-10-07 17:18:37,290 - DEBUG - Taking top 8 variants by coverage in window 9:50330442-50330443
2012-10-07 17:18:37,766 - DEBUG - Taking top 8 variants by coverage in window 9:50332804-50332815
2012-10-07 17:18:37,832 - DEBUG - Taking top 8 variants by coverage in window 9:50332825-50332826
2012-10-07 17:18:37,868 - DEBUG - Taking top 8 variants by coverage in window 9:50332884-50332886
2012-10-07 17:18:38,387 - DEBUG - Taking top 8 variants by coverage in window 9:50335087-50335097
2012-10-07 17:18:38,463 - DEBUG - Taking top 8 variants by coverage in window 9:50335123-50335125
2012-10-07 17:18:39,224 - DEBUG - Taking top 8 variants by coverage in window 9:50346525-50346526
2012-10-07 17:18:39,381 - DEBUG - Taking top 8 variants by coverage in window 9:50347293-50347294
2012-10-07 17:18:39,476 - DEBUG - Taking top 8 variants by coverage in window 9:50347365-50347366
2012-10-07 17:18:39,727 - DEBUG - Taking top 8 variants by coverage in window 9:50352302-50352305
2012-10-07 17:18:39,771 - DEBUG - Taking top 8 variants by coverage in window 9:50353636-50353637
2012-10-07 17:18:40,401 - DEBUG - Taking top 8 variants by coverage in window 9:50368454-50368455
2012-10-07 17:18:40,666 - DEBUG - Taking top 8 variants by coverage in window 9:50372291-50372292
2012-10-07 17:18:40,691 - DEBUG - Taking top 8 variants by coverage in window 9:50372315-50372319
2012-10-07 17:18:40,747 - DEBUG - Taking top 8 variants by coverage in window 9:50372363-50372367
2012-10-07 17:18:41,239 - DEBUG - Taking top 8 variants by coverage in window 9:50378722-50378723
2012-10-07 17:18:41,327 - DEBUG - Taking top 8 variants by coverage in window 9:50378750-50378751
2012-10-07 17:18:41,722 - DEBUG - Taking top 8 variants by coverage in window 9:50385528-50385533
2012-10-07 17:18:42,063 - DEBUG - Taking top 8 variants by coverage in window 9:50386357-50386359
2012-10-07 17:18:42,330 - DEBUG - Taking top 8 variants by coverage in window 9:50390212-50390213
2012-10-07 17:18:44,612 - DEBUG - Taking top 8 variants by coverage in window 9:50416445-50416446
2012-10-07 17:18:45,767 - DEBUG - Taking top 8 variants by coverage in window 9:50441900-50441901
2012-10-07 17:18:45,890 - DEBUG - Taking top 8 variants by coverage in window 9:50443389-50443390
2012-10-07 17:18:46,230 - DEBUG - Taking top 8 variants by coverage in window 9:50449338-50449339
2012-10-07 17:18:46,252 - DEBUG - Taking top 8 variants by coverage in window 9:50449352-50449353
2012-10-07 17:18:47,415 - DEBUG - Taking top 8 variants by coverage in window 9:50464116-50464135
2012-10-07 17:18:48,815 - DEBUG - Taking top 8 variants by coverage in window 9:50481266-50481267
2012-10-07 17:18:48,972 - DEBUG - Taking top 8 variants by coverage in window 9:50481309-50481310
2012-10-07 17:18:49,073 - DEBUG - Taking top 8 variants by coverage in window 9:50481721-50481724
2012-10-07 17:18:49,308 - DEBUG - Taking top 8 variants by coverage in window 9:50484059-50484071
2012-10-07 17:18:49,502 - DEBUG - Taking top 8 variants by coverage in window 9:50484762-50484763
2012-10-07 17:18:49,586 - DEBUG - Taking top 8 variants by coverage in window 9:50484772-50484775
2012-10-07 17:18:49,870 - DEBUG - Taking top 8 variants by coverage in window 9:50484858-50484859
2012-10-07 17:18:49,945 - DEBUG - Taking top 8 variants by coverage in window 9:50484872-50484873
2012-10-07 17:18:49,996 - DEBUG - Taking top 8 variants by coverage in window 9:50484887-50484891
2012-10-07 17:18:50,322 - DEBUG - Taking top 8 variants by coverage in window 9:50487954-50487955
2012-10-07 17:18:50,545 - DEBUG - Taking top 8 variants by coverage in window 9:50491204-50491205
2012-10-07 17:18:50,636 - DEBUG - Taking top 8 variants by coverage in window 9:50491257-50491271
2012-10-07 17:18:51,324 - DEBUG - Taking top 8 variants by coverage in window 9:50496940-50496941
2012-10-07 17:18:51,521 - DEBUG - Taking top 8 variants by coverage in window 9:50499261-50499262
2012-10-07 17:18:51,644 - DEBUG - Taking top 8 variants by coverage in window 9:50499918-50499920
2012-10-07 17:18:52,041 - DEBUG - Taking top 8 variants by coverage in window 9:50504505-50504506
2012-10-07 17:18:52,342 - DEBUG - Taking top 8 variants by coverage in window 9:50509790-50509792
2012-10-07 17:18:52,980 - DEBUG - Taking top 8 variants by coverage in window 9:50520510-50520511
2012-10-07 17:18:53,110 - DEBUG - Taking top 8 variants by coverage in window 9:50521860-50521882
2012-10-07 17:18:53,547 - DEBUG - Taking top 8 variants by coverage in window 9:50522334-50522335
2012-10-07 17:18:54,744 - DEBUG - Taking top 8 variants by coverage in window 9:50532767-50532768
2012-10-07 17:18:55,116 - DEBUG - Taking top 8 variants by coverage in window 9:50536842-50536843
2012-10-07 17:18:55,128 - DEBUG - Taking top 8 variants by coverage in window 9:50536843-50536844
2012-10-07 17:18:55,490 - DEBUG - Taking top 8 variants by coverage in window 9:50540733-50540734
2012-10-07 17:18:55,686 - DEBUG - Taking top 8 variants by coverage in window 9:50542418-50542420
2012-10-07 17:18:56,002 - DEBUG - Taking top 8 variants by coverage in window 9:50547039-50547040
2012-10-07 17:18:56,606 - DEBUG - Taking top 8 variants by coverage in window 9:50556397-50556398
2012-10-07 17:18:56,896 - DEBUG - Taking top 8 variants by coverage in window 9:50561953-50561954
2012-10-07 17:18:57,076 - DEBUG - Taking top 8 variants by coverage in window 9:50565584-50565585
2012-10-07 17:18:58,153 - DEBUG - Taking top 8 variants by coverage in window 9:50584327-50584342
2012-10-07 17:18:58,164 - DEBUG - Taking top 8 variants by coverage in window 9:50584346-50584347
2012-10-07 17:18:58,485 - DEBUG - Taking top 8 variants by coverage in window 9:50588238-50588239
2012-10-07 17:18:59,116 - DEBUG - Taking top 8 variants by coverage in window 9:50596403-50596405
2012-10-07 17:18:59,422 - DEBUG - Taking top 8 variants by coverage in window 9:50599942-50599943
2012-10-07 17:18:59,436 - DEBUG - Taking top 8 variants by coverage in window 9:50599945-50599946
2012-10-07 17:18:59,538 - DEBUG - Taking top 8 variants by coverage in window 9:50601181-50601183
2012-10-07 17:18:59,589 - DEBUG - Taking top 8 variants by coverage in window 9:50601530-50601531
2012-10-07 17:18:59,754 - DEBUG - Taking top 8 variants by coverage in window 9:50603266-50603267
2012-10-07 17:18:59,989 - DEBUG - Taking top 8 variants by coverage in window 9:50604926-50604927
2012-10-07 17:19:00,124 - DEBUG - Taking top 8 variants by coverage in window 9:50605790-50605798
2012-10-07 17:19:01,641 - DEBUG - Taking top 8 variants by coverage in window 9:50626696-50626697
2012-10-07 17:19:02,693 - DEBUG - Taking top 8 variants by coverage in window 9:50637502-50637503
2012-10-07 17:19:03,367 - DEBUG - Taking top 8 variants by coverage in window 9:50646413-50646414
2012-10-07 17:19:04,960 - DEBUG - Taking top 8 variants by coverage in window 9:50667175-50667176
2012-10-07 17:19:04,979 - DEBUG - Taking top 8 variants by coverage in window 9:50667177-50667180
2012-10-07 17:19:05,007 - DEBUG - Taking top 8 variants by coverage in window 9:50667181-50667186
2012-10-07 17:19:05,119 - DEBUG - Taking top 8 variants by coverage in window 9:50668117-50668122
2012-10-07 17:19:05,180 - DEBUG - Taking top 8 variants by coverage in window 9:50668146-50668147
2012-10-07 17:19:05,969 - DEBUG - Taking top 8 variants by coverage in window 9:50677655-50677656
2012-10-07 17:19:06,509 - DEBUG - Taking top 8 variants by coverage in window 9:50684695-50684696
2012-10-07 17:19:06,568 - DEBUG - Taking top 8 variants by coverage in window 9:50685727-50685728
2012-10-07 17:19:06,888 - DEBUG - Taking top 8 variants by coverage in window 9:50692144-50692145
2012-10-07 17:19:07,362 - DEBUG - Taking top 8 variants by coverage in window 9:50705985-50705986
2012-10-07 17:19:08,191 - DEBUG - Taking top 8 variants by coverage in window 9:50728136-50728137
2012-10-07 17:19:09,352 - DEBUG - Taking top 8 variants by coverage in window 9:50757554-50757557
2012-10-07 17:19:09,426 - DEBUG - Taking top 8 variants by coverage in window 9:50757583-50757584
2012-10-07 17:19:11,723 - DEBUG - Taking top 8 variants by coverage in window 9:50802890-50802891
2012-10-07 17:19:12,484 - DEBUG - Taking top 8 variants by coverage in window 9:50820087-50820089
2012-10-07 17:19:12,553 - DEBUG - Taking top 8 variants by coverage in window 9:50820143-50820144
2012-10-07 17:19:12,564 - DEBUG - Taking top 8 variants by coverage in window 9:50820156-50820157
2012-10-07 17:19:12,864 - DEBUG - Taking top 8 variants by coverage in window 9:50824476-50824492
2012-10-07 17:19:13,253 - DEBUG - Taking top 8 variants by coverage in window 9:50829244-50829245
2012-10-07 17:19:13,418 - DEBUG - Taking top 8 variants by coverage in window 9:50831235-50831236
2012-10-07 17:19:13,881 - DEBUG - Taking top 8 variants by coverage in window 9:50841356-50841357
2012-10-07 17:19:14,426 - DEBUG - Taking top 8 variants by coverage in window 9:50851042-50851043
2012-10-07 17:19:15,719 - DEBUG - Taking top 8 variants by coverage in window 9:50864432-50864433
2012-10-07 17:19:15,745 - DEBUG - Taking top 8 variants by coverage in window 9:50864477-50864478
2012-10-07 17:19:15,874 - DEBUG - Taking top 8 variants by coverage in window 9:50866769-50866770
2012-10-07 17:19:15,938 - DEBUG - Taking top 8 variants by coverage in window 9:50867767-50867784
2012-10-07 17:19:16,690 - DEBUG - Taking top 8 variants by coverage in window 9:50873379-50873390
2012-10-07 17:19:16,871 - DEBUG - Taking top 8 variants by coverage in window 9:50873451-50873452
2012-10-07 17:19:16,937 - DEBUG - Taking top 8 variants by coverage in window 9:50873493-50873494
2012-10-07 17:19:17,009 - DEBUG - Taking top 8 variants by coverage in window 9:50873667-50873668
2012-10-07 17:19:17,461 - DEBUG - Taking top 8 variants by coverage in window 9:50878983-50878984
2012-10-07 17:19:17,683 - DEBUG - Taking top 8 variants by coverage in window 9:50880367-50880368
2012-10-07 17:19:18,789 - DEBUG - Taking top 8 variants by coverage in window 9:50897281-50897282
2012-10-07 17:19:19,034 - DEBUG - Taking top 8 variants by coverage in window 9:50901890-50901892
2012-10-07 17:19:19,318 - DEBUG - Taking top 8 variants by coverage in window 9:50907027-50907031
2012-10-07 17:19:19,457 - DEBUG - Taking top 8 variants by coverage in window 9:50907467-50907471
2012-10-07 17:19:20,377 - DEBUG - Taking top 8 variants by coverage in window 9:50917783-50917784
2012-10-07 17:19:20,668 - DEBUG - Taking top 8 variants by coverage in window 9:50923455-50923461
2012-10-07 17:19:21,095 - DEBUG - Taking top 8 variants by coverage in window 9:50930857-50930868
2012-10-07 17:19:21,107 - DEBUG - Taking top 8 variants by coverage in window 9:50930870-50930871
2012-10-07 17:19:22,822 - DEBUG - Taking top 8 variants by coverage in window 9:50947867-50947873
2012-10-07 17:19:24,149 - DEBUG - Taking top 8 variants by coverage in window 9:50960139-50960140
2012-10-07 17:19:24,194 - DEBUG - Taking top 8 variants by coverage in window 9:50960384-50960386
2012-10-07 17:19:24,343 - DEBUG - Taking top 8 variants by coverage in window 9:50961566-50961571
2012-10-07 17:19:24,447 - DEBUG - Taking top 8 variants by coverage in window 9:50961588-50961589
2012-10-07 17:19:24,883 - DEBUG - Taking top 8 variants by coverage in window 9:50967035-50967036
2012-10-07 17:19:25,985 - DEBUG - Taking top 8 variants by coverage in window 9:50980330-50980332
2012-10-07 17:19:26,328 - DEBUG - Taking top 8 variants by coverage in window 9:50982642-50982643
2012-10-07 17:19:26,337 - DEBUG - Taking top 8 variants by coverage in window 9:50982648-50982650
2012-10-07 17:19:27,930 - DEBUG - Taking top 8 variants by coverage in window 9:50996265-50996275
2012-10-07 17:19:28,028 - DEBUG - Taking top 8 variants by coverage in window 9:50997072-50997075
2012-10-07 17:19:28,044 - DEBUG - Taking top 8 variants by coverage in window 9:50997086-50997087
2012-10-07 17:19:29,183 - DEBUG - Read 93945 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 17:19:29,418 - DEBUG - Read 101578 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 17:19:29,674 - DEBUG - Read 118085 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 17:19:29,954 - DEBUG - Read 117847 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 17:19:30,225 - DEBUG - Read 113508 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 17:19:30,468 - DEBUG - Read 107100 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 17:19:30,732 - DEBUG - Read 113580 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 17:19:30,979 - DEBUG - Read 101747 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 17:19:31,210 - DEBUG - Read 97349 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 17:19:31,446 - DEBUG - Read 98377 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 17:19:31,699 - DEBUG - Read 109172 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 17:19:31,920 - DEBUG - Read 96157 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 17:19:32,155 - DEBUG - Read 99115 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 17:19:32,393 - DEBUG - Read 109709 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 17:19:32,659 - DEBUG - Read 119036 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 17:19:32,880 - DEBUG - Read 90063 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 17:19:33,127 - DEBUG - Read 113925 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 17:19:33,381 - DEBUG - Read 110036 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 17:19:33,593 - DEBUG - Read 91287 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 17:19:33,853 - DEBUG - Read 94342 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 17:19:33,950 - DEBUG - Detected 19475 variants in 93945 reads
2012-10-07 17:19:34,102 - DEBUG - Detected 27398 variants in 101578 reads
2012-10-07 17:19:34,298 - DEBUG - Detected 37105 variants in 118085 reads
2012-10-07 17:19:34,527 - DEBUG - Detected 43180 variants in 117847 reads
2012-10-07 17:19:34,781 - DEBUG - Detected 49423 variants in 113508 reads
2012-10-07 17:19:35,053 - DEBUG - Detected 54364 variants in 107100 reads
2012-10-07 17:19:35,377 - DEBUG - Detected 66594 variants in 113580 reads
2012-10-07 17:19:35,729 - DEBUG - Detected 71183 variants in 101747 reads
2012-10-07 17:19:36,101 - DEBUG - Detected 76345 variants in 97349 reads
2012-10-07 17:19:36,494 - DEBUG - Detected 82007 variants in 98377 reads
2012-10-07 17:19:36,916 - DEBUG - Detected 86066 variants in 109172 reads
2012-10-07 17:19:37,347 - DEBUG - Detected 89529 variants in 96157 reads
2012-10-07 17:19:37,791 - DEBUG - Detected 93104 variants in 99115 reads
2012-10-07 17:19:38,296 - DEBUG - Detected 96842 variants in 109709 reads
2012-10-07 17:19:38,797 - DEBUG - Detected 104076 variants in 119036 reads
2012-10-07 17:19:39,302 - DEBUG - Detected 107431 variants in 90063 reads
2012-10-07 17:19:39,845 - DEBUG - Detected 110782 variants in 113925 reads
2012-10-07 17:19:40,396 - DEBUG - Detected 114314 variants in 110036 reads
2012-10-07 17:19:40,948 - DEBUG - Detected 118057 variants in 91287 reads
2012-10-07 17:19:41,562 - DEBUG - Detected 121938 variants in 94342 reads
2012-10-07 17:19:42,668 - DEBUG - Taking top 8 variants by coverage in window 9:51003048-51003049
2012-10-07 17:19:43,032 - DEBUG - Taking top 8 variants by coverage in window 9:51006006-51006007
2012-10-07 17:19:43,112 - DEBUG - Taking top 8 variants by coverage in window 9:51006666-51006667
2012-10-07 17:19:43,233 - DEBUG - Taking top 8 variants by coverage in window 9:51008408-51008410
2012-10-07 17:19:43,283 - DEBUG - Taking top 8 variants by coverage in window 9:51008451-51008452
2012-10-07 17:19:43,546 - DEBUG - Taking top 8 variants by coverage in window 9:51013747-51013748
2012-10-07 17:19:43,927 - DEBUG - Taking top 8 variants by coverage in window 9:51022356-51022357
2012-10-07 17:19:44,023 - DEBUG - Taking top 8 variants by coverage in window 9:51024946-51024947
2012-10-07 17:19:44,208 - DEBUG - Taking top 8 variants by coverage in window 9:51028740-51028741
2012-10-07 17:19:44,283 - DEBUG - Taking top 8 variants by coverage in window 9:51029267-51029268
2012-10-07 17:19:44,290 - DEBUG - Taking top 8 variants by coverage in window 9:51029268-51029269
2012-10-07 17:19:44,480 - DEBUG - Taking top 8 variants by coverage in window 9:51033327-51033328
2012-10-07 17:19:44,664 - DEBUG - Taking top 8 variants by coverage in window 9:51035773-51035774
2012-10-07 17:19:45,259 - DEBUG - Taking top 8 variants by coverage in window 9:51048616-51048617
2012-10-07 17:19:45,562 - DEBUG - Taking top 8 variants by coverage in window 9:51052629-51052630
2012-10-07 17:19:45,575 - DEBUG - Taking top 8 variants by coverage in window 9:51052641-51052642
2012-10-07 17:19:45,908 - DEBUG - Taking top 8 variants by coverage in window 9:51058582-51058583
2012-10-07 17:19:45,950 - DEBUG - Taking top 8 variants by coverage in window 9:51058613-51058614
2012-10-07 17:19:46,147 - DEBUG - Taking top 8 variants by coverage in window 9:51061979-51061980
2012-10-07 17:19:46,485 - DEBUG - Taking top 8 variants by coverage in window 9:51064355-51064356
2012-10-07 17:19:46,609 - DEBUG - Taking top 8 variants by coverage in window 9:51066102-51066106
2012-10-07 17:19:46,956 - DEBUG - Taking top 8 variants by coverage in window 9:51069349-51069350
2012-10-07 17:19:47,140 - DEBUG - Taking top 8 variants by coverage in window 9:51071270-51071271
2012-10-07 17:19:47,174 - DEBUG - Taking top 8 variants by coverage in window 9:51071278-51071281
2012-10-07 17:19:47,222 - DEBUG - Taking top 8 variants by coverage in window 9:51071282-51071283
2012-10-07 17:19:47,404 - DEBUG - Taking top 8 variants by coverage in window 9:51073999-51074003
2012-10-07 17:19:47,870 - DEBUG - Taking top 8 variants by coverage in window 9:51085962-51085963
2012-10-07 17:19:48,183 - DEBUG - Taking top 8 variants by coverage in window 9:51096427-51096428
2012-10-07 17:19:48,331 - DEBUG - Taking top 8 variants by coverage in window 9:51097154-51097155
2012-10-07 17:19:48,514 - DEBUG - Taking top 8 variants by coverage in window 9:51101509-51101510
2012-10-07 17:19:48,597 - DEBUG - Taking top 8 variants by coverage in window 9:51102203-51102204
2012-10-07 17:19:48,635 - DEBUG - Taking top 8 variants by coverage in window 9:51102224-51102225
2012-10-07 17:19:49,120 - DEBUG - Taking top 8 variants by coverage in window 9:51112172-51112173
2012-10-07 17:19:49,208 - DEBUG - Taking top 8 variants by coverage in window 9:51112188-51112189
2012-10-07 17:19:49,352 - DEBUG - Taking top 8 variants by coverage in window 9:51112278-51112279
2012-10-07 17:19:49,663 - DEBUG - Taking top 8 variants by coverage in window 9:51115208-51115209
2012-10-07 17:19:49,967 - DEBUG - Taking top 8 variants by coverage in window 9:51121599-51121600
2012-10-07 17:19:50,216 - DEBUG - Taking top 8 variants by coverage in window 9:51129459-51129460
2012-10-07 17:19:50,274 - DEBUG - Taking top 8 variants by coverage in window 9:51131581-51131591
2012-10-07 17:19:50,310 - DEBUG - Taking top 8 variants by coverage in window 9:51131758-51131759
2012-10-07 17:19:50,888 - DEBUG - Taking top 8 variants by coverage in window 9:51141378-51141379
2012-10-07 17:19:51,259 - DEBUG - Taking top 8 variants by coverage in window 9:51145337-51145338
2012-10-07 17:19:51,555 - DEBUG - Taking top 8 variants by coverage in window 9:51148512-51148513
2012-10-07 17:19:52,014 - DEBUG - Taking top 8 variants by coverage in window 9:51158322-51158323
2012-10-07 17:19:52,691 - DEBUG - Taking top 8 variants by coverage in window 9:51170294-51170297
2012-10-07 17:19:52,758 - DEBUG - Taking top 8 variants by coverage in window 9:51170396-51170402
2012-10-07 17:19:54,295 - DEBUG - Taking top 8 variants by coverage in window 9:51170491-51170492
2012-10-07 17:19:54,567 - DEBUG - Taking top 8 variants by coverage in window 9:51175296-51175297
2012-10-07 17:19:54,745 - DEBUG - Taking top 8 variants by coverage in window 9:51179461-51179462
2012-10-07 17:19:54,932 - DEBUG - Taking top 8 variants by coverage in window 9:51181822-51181823
2012-10-07 17:19:54,981 - DEBUG - Taking top 8 variants by coverage in window 9:51181984-51181985
2012-10-07 17:19:55,002 - DEBUG - Taking top 8 variants by coverage in window 9:51181986-51181987
2012-10-07 17:19:55,418 - DEBUG - Taking top 8 variants by coverage in window 9:51186732-51186740
2012-10-07 17:19:55,797 - DEBUG - Taking top 8 variants by coverage in window 9:51188788-51188789
2012-10-07 17:19:56,679 - DEBUG - Taking top 8 variants by coverage in window 9:51208745-51208746
2012-10-07 17:19:56,694 - DEBUG - Taking top 8 variants by coverage in window 9:51208746-51208748
2012-10-07 17:19:57,223 - DEBUG - Taking top 8 variants by coverage in window 9:51216936-51216937
2012-10-07 17:19:57,696 - DEBUG - Taking top 8 variants by coverage in window 9:51229872-51229873
2012-10-07 17:19:58,152 - DEBUG - Taking top 8 variants by coverage in window 9:51236840-51236852
2012-10-07 17:19:58,262 - DEBUG - Taking top 8 variants by coverage in window 9:51236858-51236871
2012-10-07 17:19:59,027 - DEBUG - Taking top 8 variants by coverage in window 9:51236888-51236900
2012-10-07 17:19:59,287 - DEBUG - Taking top 8 variants by coverage in window 9:51236912-51236927
2012-10-07 17:20:01,516 - DEBUG - Taking top 8 variants by coverage in window 9:51246911-51246912
2012-10-07 17:20:01,974 - DEBUG - Taking top 8 variants by coverage in window 9:51250490-51250491
2012-10-07 17:20:02,031 - DEBUG - Taking top 8 variants by coverage in window 9:51251892-51251893
2012-10-07 17:20:02,166 - DEBUG - Taking top 8 variants by coverage in window 9:51252851-51252857
2012-10-07 17:20:02,750 - DEBUG - Taking top 8 variants by coverage in window 9:51262418-51262419
2012-10-07 17:20:03,234 - DEBUG - Taking top 8 variants by coverage in window 9:51273761-51273762
2012-10-07 17:20:04,050 - DEBUG - Taking top 8 variants by coverage in window 9:51287871-51287872
2012-10-07 17:20:04,908 - DEBUG - Taking top 8 variants by coverage in window 9:51300912-51300913
2012-10-07 17:20:05,270 - DEBUG - Taking top 8 variants by coverage in window 9:51306138-51306139
2012-10-07 17:20:07,291 - DEBUG - Taking top 8 variants by coverage in window 9:51336292-51336293
2012-10-07 17:20:08,371 - DEBUG - Taking top 8 variants by coverage in window 9:51351844-51351845
2012-10-07 17:20:08,487 - DEBUG - Taking top 8 variants by coverage in window 9:51353026-51353027
2012-10-07 17:20:08,805 - DEBUG - Taking top 8 variants by coverage in window 9:51357117-51357119
2012-10-07 17:20:08,851 - DEBUG - Taking top 8 variants by coverage in window 9:51357273-51357274
2012-10-07 17:20:09,973 - DEBUG - Taking top 8 variants by coverage in window 9:51371473-51371483
2012-10-07 17:20:10,121 - DEBUG - Taking top 8 variants by coverage in window 9:51372687-51372691
2012-10-07 17:20:10,151 - DEBUG - Taking top 8 variants by coverage in window 9:51379382-51379383
2012-10-07 17:20:11,120 - DEBUG - Taking top 8 variants by coverage in window 9:51391577-51391588
2012-10-07 17:20:13,322 - DEBUG - Taking top 8 variants by coverage in window 9:51420256-51420257
2012-10-07 17:20:13,359 - DEBUG - Taking top 8 variants by coverage in window 9:51428566-51428567
2012-10-07 17:20:13,478 - DEBUG - Taking top 8 variants by coverage in window 9:51429304-51429305
2012-10-07 17:20:14,000 - DEBUG - Taking top 8 variants by coverage in window 9:51437083-51437084
2012-10-07 17:20:14,614 - DEBUG - Taking top 8 variants by coverage in window 9:51444611-51444612
2012-10-07 17:20:14,690 - DEBUG - Taking top 8 variants by coverage in window 9:51447419-51447420
2012-10-07 17:20:14,865 - DEBUG - Taking top 8 variants by coverage in window 9:51453136-51453137
2012-10-07 17:20:14,896 - DEBUG - Taking top 8 variants by coverage in window 9:51453182-51453183
2012-10-07 17:20:14,989 - DEBUG - Taking top 8 variants by coverage in window 9:51454328-51454329
2012-10-07 17:20:14,998 - DEBUG - Taking top 8 variants by coverage in window 9:51454330-51454331
2012-10-07 17:20:15,388 - DEBUG - Taking top 8 variants by coverage in window 9:51462791-51462792
2012-10-07 17:20:16,314 - DEBUG - Taking top 8 variants by coverage in window 9:51479326-51479327
2012-10-07 17:20:16,983 - DEBUG - Taking top 8 variants by coverage in window 9:51491310-51491312
2012-10-07 17:20:17,060 - DEBUG - Taking top 8 variants by coverage in window 9:51491504-51491505
2012-10-07 17:20:17,252 - DEBUG - Taking top 8 variants by coverage in window 9:51495986-51495987
2012-10-07 17:20:17,269 - DEBUG - Taking top 8 variants by coverage in window 9:51495991-51495997
2012-10-07 17:20:17,326 - DEBUG - Taking top 8 variants by coverage in window 9:51496005-51496006
2012-10-07 17:20:17,538 - DEBUG - Taking top 8 variants by coverage in window 9:51498243-51498244
2012-10-07 17:20:17,802 - DEBUG - Taking top 8 variants by coverage in window 9:51502348-51502349
2012-10-07 17:20:17,902 - DEBUG - Taking top 8 variants by coverage in window 9:51503562-51503563
2012-10-07 17:20:17,973 - DEBUG - Taking top 8 variants by coverage in window 9:51503622-51503623
2012-10-07 17:20:18,198 - DEBUG - Taking top 8 variants by coverage in window 9:51506759-51506760
2012-10-07 17:20:18,223 - DEBUG - Taking top 8 variants by coverage in window 9:51506769-51506770
2012-10-07 17:20:18,283 - DEBUG - Taking top 8 variants by coverage in window 9:51506841-51506842
2012-10-07 17:20:18,612 - DEBUG - Taking top 8 variants by coverage in window 9:51513362-51513364
2012-10-07 17:20:18,622 - DEBUG - Taking top 8 variants by coverage in window 9:51513390-51513391
2012-10-07 17:20:18,628 - DEBUG - Taking top 8 variants by coverage in window 9:51513391-51513396
2012-10-07 17:20:18,767 - DEBUG - Taking top 8 variants by coverage in window 9:51513465-51513467
2012-10-07 17:20:19,046 - DEBUG - Taking top 8 variants by coverage in window 9:51513690-51513694
2012-10-07 17:20:19,345 - DEBUG - Taking top 8 variants by coverage in window 9:51522062-51522075
2012-10-07 17:20:19,704 - DEBUG - Taking top 8 variants by coverage in window 9:51527895-51527896
2012-10-07 17:20:20,031 - DEBUG - Taking top 8 variants by coverage in window 9:51531240-51531241
2012-10-07 17:20:20,054 - DEBUG - Taking top 8 variants by coverage in window 9:51531447-51531448
2012-10-07 17:20:20,481 - DEBUG - Taking top 8 variants by coverage in window 9:51537840-51537841
2012-10-07 17:20:20,948 - DEBUG - Taking top 8 variants by coverage in window 9:51545769-51545771
2012-10-07 17:20:21,022 - DEBUG - Taking top 8 variants by coverage in window 9:51545804-51545807
2012-10-07 17:20:21,046 - DEBUG - Taking top 8 variants by coverage in window 9:51545812-51545813
2012-10-07 17:20:21,178 - DEBUG - Taking top 8 variants by coverage in window 9:51546367-51546368
2012-10-07 17:20:22,714 - DEBUG - Taking top 8 variants by coverage in window 9:51569591-51569592
2012-10-07 17:20:22,885 - DEBUG - Taking top 8 variants by coverage in window 9:51574832-51574833
2012-10-07 17:20:22,996 - DEBUG - Taking top 8 variants by coverage in window 9:51576699-51576700
2012-10-07 17:20:23,678 - DEBUG - Taking top 8 variants by coverage in window 9:51588202-51588213
2012-10-07 17:20:24,748 - DEBUG - Taking top 8 variants by coverage in window 9:51604078-51604090
2012-10-07 17:20:24,799 - DEBUG - Taking top 8 variants by coverage in window 9:51604116-51604117
2012-10-07 17:20:24,847 - DEBUG - Taking top 8 variants by coverage in window 9:51604144-51604145
2012-10-07 17:20:25,263 - DEBUG - Taking top 8 variants by coverage in window 9:51608746-51608747
2012-10-07 17:20:25,926 - DEBUG - Taking top 8 variants by coverage in window 9:51617533-51617536
2012-10-07 17:20:25,968 - DEBUG - Taking top 8 variants by coverage in window 9:51617573-51617574
2012-10-07 17:20:26,728 - DEBUG - Taking top 8 variants by coverage in window 9:51627078-51627080
2012-10-07 17:20:26,754 - DEBUG - Taking top 8 variants by coverage in window 9:51627101-51627102
2012-10-07 17:20:26,805 - DEBUG - Taking top 8 variants by coverage in window 9:51627210-51627211
2012-10-07 17:20:26,849 - DEBUG - Taking top 8 variants by coverage in window 9:51627222-51627224
2012-10-07 17:20:27,017 - DEBUG - Taking top 8 variants by coverage in window 9:51627409-51627410
2012-10-07 17:20:27,904 - DEBUG - Taking top 8 variants by coverage in window 9:51639038-51639040
2012-10-07 17:20:28,073 - DEBUG - Taking top 8 variants by coverage in window 9:51640947-51640954
2012-10-07 17:20:28,225 - DEBUG - Taking top 8 variants by coverage in window 9:51641773-51641774
2012-10-07 17:20:28,812 - DEBUG - Taking top 8 variants by coverage in window 9:51653548-51653549
2012-10-07 17:20:28,908 - DEBUG - Taking top 8 variants by coverage in window 9:51654939-51654940
2012-10-07 17:20:29,850 - DEBUG - Taking top 8 variants by coverage in window 9:51677990-51677991
2012-10-07 17:20:30,103 - DEBUG - Taking top 8 variants by coverage in window 9:51683922-51683923
2012-10-07 17:20:30,217 - DEBUG - Taking top 8 variants by coverage in window 9:51684589-51684590
2012-10-07 17:20:30,304 - DEBUG - Taking top 8 variants by coverage in window 9:51685329-51685331
2012-10-07 17:20:30,563 - DEBUG - Taking top 8 variants by coverage in window 9:51687435-51687436
2012-10-07 17:20:30,622 - DEBUG - Taking top 8 variants by coverage in window 9:51687479-51687480
2012-10-07 17:20:30,882 - DEBUG - Taking top 8 variants by coverage in window 9:51688684-51688685
2012-10-07 17:20:31,193 - DEBUG - Taking top 8 variants by coverage in window 9:51694807-51694808
2012-10-07 17:20:31,681 - DEBUG - Taking top 8 variants by coverage in window 9:51705645-51705646
2012-10-07 17:20:31,913 - DEBUG - Taking top 8 variants by coverage in window 9:51710206-51710207
2012-10-07 17:20:32,168 - DEBUG - Taking top 8 variants by coverage in window 9:51715429-51715430
2012-10-07 17:20:32,545 - DEBUG - Taking top 8 variants by coverage in window 9:51720219-51720220
2012-10-07 17:20:32,947 - DEBUG - Taking top 8 variants by coverage in window 9:51723761-51723762
2012-10-07 17:20:33,667 - DEBUG - Taking top 8 variants by coverage in window 9:51734140-51734141
2012-10-07 17:20:34,119 - DEBUG - Taking top 8 variants by coverage in window 9:51736189-51736190
2012-10-07 17:20:35,162 - DEBUG - Taking top 8 variants by coverage in window 9:51763229-51763231
2012-10-07 17:20:35,225 - DEBUG - Taking top 8 variants by coverage in window 9:51763776-51763779
2012-10-07 17:20:35,352 - DEBUG - Taking top 8 variants by coverage in window 9:51767159-51767160
2012-10-07 17:20:35,598 - DEBUG - Taking top 8 variants by coverage in window 9:51771126-51771128
2012-10-07 17:20:36,162 - DEBUG - Taking top 8 variants by coverage in window 9:51779534-51779535
2012-10-07 17:20:36,190 - DEBUG - Taking top 8 variants by coverage in window 9:51779552-51779553
2012-10-07 17:20:37,168 - DEBUG - Taking top 8 variants by coverage in window 9:51800712-51800713
2012-10-07 17:20:37,275 - DEBUG - Taking top 8 variants by coverage in window 9:51802804-51802805
2012-10-07 17:20:37,645 - DEBUG - Taking top 8 variants by coverage in window 9:51813472-51813473
2012-10-07 17:20:37,656 - DEBUG - Taking top 8 variants by coverage in window 9:51813480-51813481
2012-10-07 17:20:38,249 - DEBUG - Taking top 8 variants by coverage in window 9:51823599-51823601
2012-10-07 17:20:38,293 - DEBUG - Taking top 8 variants by coverage in window 9:51824315-51824316
2012-10-07 17:20:38,374 - DEBUG - Taking top 8 variants by coverage in window 9:51826306-51826307
2012-10-07 17:20:38,529 - DEBUG - Taking top 8 variants by coverage in window 9:51829637-51829638
2012-10-07 17:20:38,570 - DEBUG - Taking top 8 variants by coverage in window 9:51830501-51830502
2012-10-07 17:20:38,895 - DEBUG - Taking top 8 variants by coverage in window 9:51834395-51834396
2012-10-07 17:20:39,815 - DEBUG - Taking top 8 variants by coverage in window 9:51850730-51850731
2012-10-07 17:20:39,837 - DEBUG - Taking top 8 variants by coverage in window 9:51850761-51850765
2012-10-07 17:20:40,736 - DEBUG - Taking top 8 variants by coverage in window 9:51870536-51870537
2012-10-07 17:20:40,759 - DEBUG - Taking top 8 variants by coverage in window 9:51870545-51870546
2012-10-07 17:20:41,486 - DEBUG - Taking top 8 variants by coverage in window 9:51879784-51879788
2012-10-07 17:20:41,526 - DEBUG - Taking top 8 variants by coverage in window 9:51879846-51879847
2012-10-07 17:20:41,679 - DEBUG - Taking top 8 variants by coverage in window 9:51880824-51880825
2012-10-07 17:20:41,893 - DEBUG - Taking top 8 variants by coverage in window 9:51882461-51882463
2012-10-07 17:20:41,924 - DEBUG - Taking top 8 variants by coverage in window 9:51882835-51882836
2012-10-07 17:20:42,214 - DEBUG - Taking top 8 variants by coverage in window 9:51885566-51885567
2012-10-07 17:20:42,406 - DEBUG - Taking top 8 variants by coverage in window 9:51887498-51887499
2012-10-07 17:20:43,965 - DEBUG - Taking top 8 variants by coverage in window 9:51909752-51909753
2012-10-07 17:20:44,010 - DEBUG - Taking top 8 variants by coverage in window 9:51909792-51909794
2012-10-07 17:20:44,846 - DEBUG - Taking top 8 variants by coverage in window 9:51927954-51927955
2012-10-07 17:20:44,995 - DEBUG - Taking top 8 variants by coverage in window 9:51931340-51931341
2012-10-07 17:20:45,029 - DEBUG - Taking top 8 variants by coverage in window 9:51932311-51932315
2012-10-07 17:20:45,050 - DEBUG - Taking top 8 variants by coverage in window 9:51932508-51932509
2012-10-07 17:20:45,183 - DEBUG - Taking top 8 variants by coverage in window 9:51935478-51935481
2012-10-07 17:20:45,195 - DEBUG - Taking top 8 variants by coverage in window 9:51935486-51935487
2012-10-07 17:20:46,690 - DEBUG - Taking top 8 variants by coverage in window 9:51969105-51969106
2012-10-07 17:20:47,502 - DEBUG - Taking top 8 variants by coverage in window 9:51983589-51983590
2012-10-07 17:20:47,875 - DEBUG - Taking top 8 variants by coverage in window 9:51986792-51986811
2012-10-07 17:20:48,524 - DEBUG - Taking top 8 variants by coverage in window 9:51990688-51990693
2012-10-07 17:20:48,546 - DEBUG - Taking top 8 variants by coverage in window 9:51991785-51991786
2012-10-07 17:20:49,848 - DEBUG - Read 87294 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 17:20:50,076 - DEBUG - Read 94257 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 17:20:50,325 - DEBUG - Read 111400 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 17:20:50,598 - DEBUG - Read 110852 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 17:20:50,862 - DEBUG - Read 105310 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 17:20:51,097 - DEBUG - Read 99832 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 17:20:51,350 - DEBUG - Read 106166 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 17:20:51,589 - DEBUG - Read 93814 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 17:20:51,810 - DEBUG - Read 90031 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 17:20:52,042 - DEBUG - Read 93039 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 17:20:52,292 - DEBUG - Read 102468 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 17:20:52,508 - DEBUG - Read 90844 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 17:20:52,736 - DEBUG - Read 92560 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 17:20:52,966 - DEBUG - Read 101692 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 17:20:53,224 - DEBUG - Read 110882 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 17:20:53,487 - DEBUG - Read 84675 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 17:20:53,726 - DEBUG - Read 105506 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 17:20:53,973 - DEBUG - Read 101972 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 17:20:54,178 - DEBUG - Read 85037 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 17:20:54,406 - DEBUG - Read 87937 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 17:20:54,498 - DEBUG - Detected 19060 variants in 87294 reads
2012-10-07 17:20:54,643 - DEBUG - Detected 28701 variants in 94257 reads
2012-10-07 17:20:54,832 - DEBUG - Detected 36521 variants in 111400 reads
2012-10-07 17:20:55,072 - DEBUG - Detected 43780 variants in 110852 reads
2012-10-07 17:20:55,322 - DEBUG - Detected 49398 variants in 105310 reads
2012-10-07 17:20:55,591 - DEBUG - Detected 54535 variants in 99832 reads
2012-10-07 17:20:55,895 - DEBUG - Detected 66108 variants in 106166 reads
2012-10-07 17:20:56,242 - DEBUG - Detected 70686 variants in 93814 reads
2012-10-07 17:20:56,604 - DEBUG - Detected 75582 variants in 90031 reads
2012-10-07 17:20:56,989 - DEBUG - Detected 80163 variants in 93039 reads
2012-10-07 17:20:57,402 - DEBUG - Detected 84969 variants in 102468 reads
2012-10-07 17:20:57,857 - DEBUG - Detected 88442 variants in 90844 reads
2012-10-07 17:20:58,293 - DEBUG - Detected 92119 variants in 92560 reads
2012-10-07 17:20:58,750 - DEBUG - Detected 95909 variants in 101692 reads
2012-10-07 17:20:59,239 - DEBUG - Detected 102532 variants in 110882 reads
2012-10-07 17:20:59,733 - DEBUG - Detected 106070 variants in 84675 reads
2012-10-07 17:21:00,267 - DEBUG - Detected 109683 variants in 105506 reads
2012-10-07 17:21:00,855 - DEBUG - Detected 113200 variants in 101972 reads
2012-10-07 17:21:01,404 - DEBUG - Detected 116623 variants in 85037 reads
2012-10-07 17:21:01,972 - DEBUG - Detected 120728 variants in 87937 reads
2012-10-07 17:21:03,411 - DEBUG - Taking top 8 variants by coverage in window 9:52005600-52005601
2012-10-07 17:21:03,683 - DEBUG - Taking top 8 variants by coverage in window 9:52007753-52007754
2012-10-07 17:21:03,712 - DEBUG - Taking top 8 variants by coverage in window 9:52007769-52007771
2012-10-07 17:21:04,373 - DEBUG - Taking top 8 variants by coverage in window 9:52017172-52017173
2012-10-07 17:21:05,371 - DEBUG - Taking top 8 variants by coverage in window 9:52032254-52032264
2012-10-07 17:21:05,462 - DEBUG - Taking top 8 variants by coverage in window 9:52032718-52032719
2012-10-07 17:21:05,478 - DEBUG - Taking top 8 variants by coverage in window 9:52032719-52032720
2012-10-07 17:21:05,775 - DEBUG - Taking top 8 variants by coverage in window 9:52038152-52038153
2012-10-07 17:21:06,077 - DEBUG - Taking top 8 variants by coverage in window 9:52042301-52042302
2012-10-07 17:21:06,576 - DEBUG - Taking top 8 variants by coverage in window 9:52050332-52050336
2012-10-07 17:21:07,433 - DEBUG - Taking top 8 variants by coverage in window 9:52060776-52060777
2012-10-07 17:21:08,012 - DEBUG - Taking top 8 variants by coverage in window 9:52070613-52070614
2012-10-07 17:21:08,566 - DEBUG - Taking top 8 variants by coverage in window 9:52078637-52078638
2012-10-07 17:21:08,805 - DEBUG - Taking top 8 variants by coverage in window 9:52083544-52083545
2012-10-07 17:21:08,833 - DEBUG - Taking top 8 variants by coverage in window 9:52083978-52083979
2012-10-07 17:21:09,214 - DEBUG - Taking top 8 variants by coverage in window 9:52087728-52087732
2012-10-07 17:21:09,317 - DEBUG - Taking top 8 variants by coverage in window 9:52087915-52087929
2012-10-07 17:21:09,586 - DEBUG - Taking top 8 variants by coverage in window 9:52089795-52089796
2012-10-07 17:21:09,680 - DEBUG - Taking top 8 variants by coverage in window 9:52091313-52091319
2012-10-07 17:21:09,747 - DEBUG - Taking top 8 variants by coverage in window 9:52091875-52091876
2012-10-07 17:21:09,873 - DEBUG - Taking top 8 variants by coverage in window 9:52093630-52093631
2012-10-07 17:21:10,024 - DEBUG - Taking top 8 variants by coverage in window 9:52096774-52096775
2012-10-07 17:21:10,161 - DEBUG - Taking top 8 variants by coverage in window 9:52097917-52097931
2012-10-07 17:21:10,607 - DEBUG - Taking top 8 variants by coverage in window 9:52104629-52104630
2012-10-07 17:21:11,221 - DEBUG - Taking top 8 variants by coverage in window 9:52114062-52114064
2012-10-07 17:21:13,044 - DEBUG - Taking top 8 variants by coverage in window 9:52144263-52144264
2012-10-07 17:21:13,749 - DEBUG - Taking top 8 variants by coverage in window 9:52158443-52158449
2012-10-07 17:21:13,774 - DEBUG - Taking top 8 variants by coverage in window 9:52158460-52158461
2012-10-07 17:21:14,647 - DEBUG - Taking top 8 variants by coverage in window 9:52178499-52178502
2012-10-07 17:21:14,849 - DEBUG - Taking top 8 variants by coverage in window 9:52181705-52181706
2012-10-07 17:21:14,876 - DEBUG - Taking top 8 variants by coverage in window 9:52181727-52181728
2012-10-07 17:21:15,089 - DEBUG - Taking top 8 variants by coverage in window 9:52185617-52185618
2012-10-07 17:21:15,299 - DEBUG - Taking top 8 variants by coverage in window 9:52193428-52193440
2012-10-07 17:21:16,135 - DEBUG - Taking top 8 variants by coverage in window 9:52208432-52208433
2012-10-07 17:21:16,430 - DEBUG - Taking top 8 variants by coverage in window 9:52212277-52212278
2012-10-07 17:21:16,479 - DEBUG - Taking top 8 variants by coverage in window 9:52212537-52212538
2012-10-07 17:21:17,628 - DEBUG - Taking top 8 variants by coverage in window 9:52223081-52223082
2012-10-07 17:21:18,079 - DEBUG - Taking top 8 variants by coverage in window 9:52226919-52226921
2012-10-07 17:21:18,114 - DEBUG - Taking top 8 variants by coverage in window 9:52230428-52230429
2012-10-07 17:21:18,412 - DEBUG - Taking top 8 variants by coverage in window 9:52235253-52235254
2012-10-07 17:21:19,114 - DEBUG - Taking top 8 variants by coverage in window 9:52247392-52247393
2012-10-07 17:21:20,380 - DEBUG - Taking top 8 variants by coverage in window 9:52270737-52270738
2012-10-07 17:21:20,393 - DEBUG - Taking top 8 variants by coverage in window 9:52270773-52270774
2012-10-07 17:21:21,038 - DEBUG - Taking top 8 variants by coverage in window 9:52280167-52280168
2012-10-07 17:21:21,407 - DEBUG - Taking top 8 variants by coverage in window 9:52283755-52283757
2012-10-07 17:21:21,629 - DEBUG - Taking top 8 variants by coverage in window 9:52285761-52285762
2012-10-07 17:21:22,174 - DEBUG - Taking top 8 variants by coverage in window 9:52293133-52293137
2012-10-07 17:21:23,418 - DEBUG - Taking top 8 variants by coverage in window 9:52310491-52310494
2012-10-07 17:21:24,126 - DEBUG - Taking top 8 variants by coverage in window 9:52324094-52324095
2012-10-07 17:21:24,137 - DEBUG - Taking top 8 variants by coverage in window 9:52324101-52324102
2012-10-07 17:21:24,165 - DEBUG - Taking top 8 variants by coverage in window 9:52324135-52324138
2012-10-07 17:21:25,226 - DEBUG - Taking top 8 variants by coverage in window 9:52340412-52340423
2012-10-07 17:21:26,253 - DEBUG - Taking top 8 variants by coverage in window 9:52351905-52351911
2012-10-07 17:21:26,398 - DEBUG - Taking top 8 variants by coverage in window 9:52353537-52353544
2012-10-07 17:21:26,428 - DEBUG - Taking top 8 variants by coverage in window 9:52353553-52353554
2012-10-07 17:21:26,467 - DEBUG - Taking top 8 variants by coverage in window 9:52353642-52353647
2012-10-07 17:21:26,568 - DEBUG - Taking top 8 variants by coverage in window 9:52354861-52354862
2012-10-07 17:21:26,592 - DEBUG - Taking top 8 variants by coverage in window 9:52354889-52354890
2012-10-07 17:21:27,270 - DEBUG - Taking top 8 variants by coverage in window 9:52369409-52369411
2012-10-07 17:21:27,396 - DEBUG - Taking top 8 variants by coverage in window 9:52370762-52370763
2012-10-07 17:21:27,577 - DEBUG - Taking top 8 variants by coverage in window 9:52372913-52372914
2012-10-07 17:21:27,670 - DEBUG - Taking top 8 variants by coverage in window 9:52372955-52372956
2012-10-07 17:21:28,862 - DEBUG - Taking top 8 variants by coverage in window 9:52389081-52389087
2012-10-07 17:21:28,959 - DEBUG - Taking top 8 variants by coverage in window 9:52389095-52389096
2012-10-07 17:21:29,219 - DEBUG - Taking top 8 variants by coverage in window 9:52392720-52392721
2012-10-07 17:21:29,474 - DEBUG - Taking top 8 variants by coverage in window 9:52393487-52393488
2012-10-07 17:21:29,617 - DEBUG - Taking top 8 variants by coverage in window 9:52394113-52394117
2012-10-07 17:21:30,036 - DEBUG - Taking top 8 variants by coverage in window 9:52396520-52396521
2012-10-07 17:21:30,278 - DEBUG - Taking top 8 variants by coverage in window 9:52399881-52399882
2012-10-07 17:21:30,400 - DEBUG - Taking top 8 variants by coverage in window 9:52400404-52400405
2012-10-07 17:21:31,053 - DEBUG - Taking top 8 variants by coverage in window 9:52408426-52408428
2012-10-07 17:21:32,146 - DEBUG - Taking top 8 variants by coverage in window 9:52428716-52428718
2012-10-07 17:21:32,296 - DEBUG - Taking top 8 variants by coverage in window 9:52430249-52430250
2012-10-07 17:21:32,825 - DEBUG - Taking top 8 variants by coverage in window 9:52438221-52438222
2012-10-07 17:21:33,420 - DEBUG - Taking top 8 variants by coverage in window 9:52444891-52444892
2012-10-07 17:21:33,487 - DEBUG - Taking top 8 variants by coverage in window 9:52446225-52446226
2012-10-07 17:21:33,713 - DEBUG - Taking top 8 variants by coverage in window 9:52449666-52449667
2012-10-07 17:21:34,318 - DEBUG - Taking top 8 variants by coverage in window 9:52456705-52456713
2012-10-07 17:21:34,485 - DEBUG - Taking top 8 variants by coverage in window 9:52457993-52457994
2012-10-07 17:21:35,020 - DEBUG - Taking top 8 variants by coverage in window 9:52463092-52463093
2012-10-07 17:21:36,918 - DEBUG - Taking top 8 variants by coverage in window 9:52499312-52499313
2012-10-07 17:21:37,984 - DEBUG - Taking top 8 variants by coverage in window 9:52515935-52515937
2012-10-07 17:21:38,134 - DEBUG - Taking top 8 variants by coverage in window 9:52517309-52517314
2012-10-07 17:21:38,208 - DEBUG - Taking top 8 variants by coverage in window 9:52517336-52517337
2012-10-07 17:21:38,536 - DEBUG - Taking top 8 variants by coverage in window 9:52521485-52521486
2012-10-07 17:21:38,642 - DEBUG - Taking top 8 variants by coverage in window 9:52522144-52522145
2012-10-07 17:21:39,093 - DEBUG - Taking top 8 variants by coverage in window 9:52528261-52528267
2012-10-07 17:21:39,681 - DEBUG - Taking top 8 variants by coverage in window 9:52534550-52534551
2012-10-07 17:21:40,092 - DEBUG - Taking top 8 variants by coverage in window 9:52537660-52537661
2012-10-07 17:21:40,102 - DEBUG - Taking top 8 variants by coverage in window 9:52537676-52537677
2012-10-07 17:21:41,410 - DEBUG - Taking top 8 variants by coverage in window 9:52550762-52550763
2012-10-07 17:21:41,473 - DEBUG - Taking top 8 variants by coverage in window 9:52551594-52551595
2012-10-07 17:21:42,842 - DEBUG - Taking top 8 variants by coverage in window 9:52573971-52573973
2012-10-07 17:21:42,991 - DEBUG - Taking top 8 variants by coverage in window 9:52576147-52576148
2012-10-07 17:21:43,445 - DEBUG - Taking top 8 variants by coverage in window 9:52584484-52584485
2012-10-07 17:21:44,674 - DEBUG - Taking top 8 variants by coverage in window 9:52606020-52606021
2012-10-07 17:21:44,843 - DEBUG - Taking top 8 variants by coverage in window 9:52606973-52606983
2012-10-07 17:21:45,836 - DEBUG - Taking top 8 variants by coverage in window 9:52608634-52608635
2012-10-07 17:21:46,155 - DEBUG - Taking top 8 variants by coverage in window 9:52613700-52613701
2012-10-07 17:21:46,744 - DEBUG - Taking top 8 variants by coverage in window 9:52621631-52621632
2012-10-07 17:21:48,106 - DEBUG - Taking top 8 variants by coverage in window 9:52641741-52641742
2012-10-07 17:21:48,160 - DEBUG - Taking top 8 variants by coverage in window 9:52641776-52641777
2012-10-07 17:21:48,248 - DEBUG - Taking top 8 variants by coverage in window 9:52642729-52642730
2012-10-07 17:21:48,935 - DEBUG - Taking top 8 variants by coverage in window 9:52656766-52656767
2012-10-07 17:21:49,306 - DEBUG - Taking top 8 variants by coverage in window 9:52661083-52661084
2012-10-07 17:21:49,354 - DEBUG - Taking top 8 variants by coverage in window 9:52662118-52662124
2012-10-07 17:21:49,553 - DEBUG - Taking top 8 variants by coverage in window 9:52667378-52667379
2012-10-07 17:21:51,867 - DEBUG - Taking top 8 variants by coverage in window 9:52741243-52741250
2012-10-07 17:21:52,742 - DEBUG - Taking top 8 variants by coverage in window 9:52754951-52754952
2012-10-07 17:21:52,975 - DEBUG - Taking top 8 variants by coverage in window 9:52758364-52758365
2012-10-07 17:21:53,000 - DEBUG - Taking top 8 variants by coverage in window 9:52758387-52758388
2012-10-07 17:21:53,069 - DEBUG - Taking top 8 variants by coverage in window 9:52759850-52759851
2012-10-07 17:21:53,156 - DEBUG - Taking top 8 variants by coverage in window 9:52760344-52760349
2012-10-07 17:21:53,242 - DEBUG - Taking top 8 variants by coverage in window 9:52762649-52762650
2012-10-07 17:21:54,526 - DEBUG - Taking top 8 variants by coverage in window 9:52788859-52788879
2012-10-07 17:21:54,571 - DEBUG - Taking top 8 variants by coverage in window 9:52788914-52788915
2012-10-07 17:21:54,623 - DEBUG - Taking top 8 variants by coverage in window 9:52789813-52789814
2012-10-07 17:21:55,053 - DEBUG - Taking top 8 variants by coverage in window 9:52796399-52796400
2012-10-07 17:21:55,121 - DEBUG - Taking top 8 variants by coverage in window 9:52797585-52797586
2012-10-07 17:21:55,312 - DEBUG - Taking top 8 variants by coverage in window 9:52807032-52807033
2012-10-07 17:21:56,616 - DEBUG - Taking top 8 variants by coverage in window 9:52827797-52827798
2012-10-07 17:21:56,917 - DEBUG - Taking top 8 variants by coverage in window 9:52832082-52832085
2012-10-07 17:21:56,941 - DEBUG - Taking top 8 variants by coverage in window 9:52832093-52832094
2012-10-07 17:21:57,086 - DEBUG - Taking top 8 variants by coverage in window 9:52833699-52833700
2012-10-07 17:21:57,164 - DEBUG - Taking top 8 variants by coverage in window 9:52834309-52834320
2012-10-07 17:21:57,399 - DEBUG - Taking top 8 variants by coverage in window 9:52836313-52836314
2012-10-07 17:21:57,614 - DEBUG - Taking top 8 variants by coverage in window 9:52840274-52840276
2012-10-07 17:21:58,026 - DEBUG - Taking top 8 variants by coverage in window 9:52844663-52844673
2012-10-07 17:21:58,241 - DEBUG - Taking top 8 variants by coverage in window 9:52845216-52845217
2012-10-07 17:21:58,450 - DEBUG - Taking top 8 variants by coverage in window 9:52850606-52850607
2012-10-07 17:21:58,656 - DEBUG - Taking top 8 variants by coverage in window 9:52853340-52853341
2012-10-07 17:21:59,033 - DEBUG - Taking top 8 variants by coverage in window 9:52862321-52862322
2012-10-07 17:21:59,840 - DEBUG - Taking top 8 variants by coverage in window 9:52872112-52872113
2012-10-07 17:22:01,800 - DEBUG - Taking top 8 variants by coverage in window 9:52905984-52905985
2012-10-07 17:22:02,597 - DEBUG - Taking top 8 variants by coverage in window 9:52919336-52919337
2012-10-07 17:22:02,708 - DEBUG - Taking top 8 variants by coverage in window 9:52921645-52921656
2012-10-07 17:22:02,894 - DEBUG - Taking top 8 variants by coverage in window 9:52925743-52925751
2012-10-07 17:22:03,066 - DEBUG - Taking top 8 variants by coverage in window 9:52926121-52926122
2012-10-07 17:22:03,084 - DEBUG - Taking top 8 variants by coverage in window 9:52926123-52926124
2012-10-07 17:22:03,782 - DEBUG - Taking top 8 variants by coverage in window 9:52938425-52938426
2012-10-07 17:22:05,529 - DEBUG - Taking top 8 variants by coverage in window 9:52976312-52976313
2012-10-07 17:22:05,849 - DEBUG - Taking top 8 variants by coverage in window 9:52983288-52983289
2012-10-07 17:22:06,271 - DEBUG - Taking top 8 variants by coverage in window 9:52989042-52989043
2012-10-07 17:22:06,394 - DEBUG - Taking top 8 variants by coverage in window 9:52993013-52993030
2012-10-07 17:22:07,557 - DEBUG - Read 85802 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 17:22:07,776 - DEBUG - Read 91673 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 17:22:08,017 - DEBUG - Read 107710 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 17:22:08,279 - DEBUG - Read 107478 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 17:22:08,533 - DEBUG - Read 102238 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 17:22:08,759 - DEBUG - Read 97344 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 17:22:08,997 - DEBUG - Read 103397 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 17:22:09,226 - DEBUG - Read 91794 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 17:22:09,535 - DEBUG - Read 87698 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 17:22:09,758 - DEBUG - Read 90338 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 17:22:09,994 - DEBUG - Read 98795 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 17:22:10,203 - DEBUG - Read 88197 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 17:22:10,417 - DEBUG - Read 88129 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 17:22:10,640 - DEBUG - Read 99270 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 17:22:10,883 - DEBUG - Read 107120 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 17:22:11,088 - DEBUG - Read 81945 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 17:22:11,321 - DEBUG - Read 103729 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 17:22:11,556 - DEBUG - Read 99680 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 17:22:11,752 - DEBUG - Read 83357 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 17:22:11,970 - DEBUG - Read 86826 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 17:22:12,064 - DEBUG - Detected 22956 variants in 85802 reads
2012-10-07 17:22:12,219 - DEBUG - Detected 32245 variants in 91673 reads
2012-10-07 17:22:12,427 - DEBUG - Detected 40724 variants in 107710 reads
2012-10-07 17:22:12,690 - DEBUG - Detected 48239 variants in 107478 reads
2012-10-07 17:22:12,963 - DEBUG - Detected 55443 variants in 102238 reads
2012-10-07 17:22:13,270 - DEBUG - Detected 63281 variants in 97344 reads
2012-10-07 17:22:13,626 - DEBUG - Detected 76084 variants in 103397 reads
2012-10-07 17:22:14,027 - DEBUG - Detected 81375 variants in 91794 reads
2012-10-07 17:22:14,451 - DEBUG - Detected 86811 variants in 87698 reads
2012-10-07 17:22:14,906 - DEBUG - Detected 91394 variants in 90338 reads
2012-10-07 17:22:15,418 - DEBUG - Detected 96139 variants in 98795 reads
2012-10-07 17:22:15,909 - DEBUG - Detected 100189 variants in 88197 reads
2012-10-07 17:22:16,421 - DEBUG - Detected 104880 variants in 88129 reads
2012-10-07 17:22:16,969 - DEBUG - Detected 109086 variants in 99270 reads
2012-10-07 17:22:17,544 - DEBUG - Detected 116342 variants in 107120 reads
2012-10-07 17:22:18,191 - DEBUG - Detected 120058 variants in 81945 reads
2012-10-07 17:22:18,817 - DEBUG - Detected 124301 variants in 103729 reads
2012-10-07 17:22:19,454 - DEBUG - Detected 128674 variants in 99680 reads
2012-10-07 17:22:20,110 - DEBUG - Detected 133500 variants in 83357 reads
2012-10-07 17:22:20,828 - DEBUG - Detected 137796 variants in 86826 reads
2012-10-07 17:22:22,145 - DEBUG - Taking top 8 variants by coverage in window 9:53003212-53003213
2012-10-07 17:22:22,398 - DEBUG - Taking top 8 variants by coverage in window 9:53010689-53010690
2012-10-07 17:22:22,633 - DEBUG - Taking top 8 variants by coverage in window 9:53013908-53013909
2012-10-07 17:22:23,175 - DEBUG - Taking top 8 variants by coverage in window 9:53035410-53035425
2012-10-07 17:22:24,336 - DEBUG - Taking top 8 variants by coverage in window 9:53063960-53063961
2012-10-07 17:22:24,677 - DEBUG - Taking top 8 variants by coverage in window 9:53069527-53069528
2012-10-07 17:22:25,463 - DEBUG - Taking top 8 variants by coverage in window 9:53081128-53081130
2012-10-07 17:22:25,499 - DEBUG - Taking top 8 variants by coverage in window 9:53081303-53081304
2012-10-07 17:22:27,281 - DEBUG - Taking top 8 variants by coverage in window 9:53114302-53114303
2012-10-07 17:22:27,329 - DEBUG - Taking top 8 variants by coverage in window 9:53115000-53115015
2012-10-07 17:22:27,736 - DEBUG - Taking top 8 variants by coverage in window 9:53122416-53122419
2012-10-07 17:22:27,931 - DEBUG - Taking top 8 variants by coverage in window 9:53122814-53122815
2012-10-07 17:22:28,287 - DEBUG - Taking top 8 variants by coverage in window 9:53127813-53127814
2012-10-07 17:22:29,160 - DEBUG - Taking top 8 variants by coverage in window 9:53138358-53138359
2012-10-07 17:22:29,589 - DEBUG - Taking top 8 variants by coverage in window 9:53146922-53146923
2012-10-07 17:22:29,815 - DEBUG - Taking top 8 variants by coverage in window 9:53150358-53150359
2012-10-07 17:22:30,279 - DEBUG - Taking top 8 variants by coverage in window 9:53157982-53157983
2012-10-07 17:22:30,380 - DEBUG - Taking top 8 variants by coverage in window 9:53158828-53158829
2012-10-07 17:22:30,390 - DEBUG - Taking top 8 variants by coverage in window 9:53158838-53158839
2012-10-07 17:22:30,558 - DEBUG - Taking top 8 variants by coverage in window 9:53161895-53161897
2012-10-07 17:22:30,601 - DEBUG - Taking top 8 variants by coverage in window 9:53162574-53162575
2012-10-07 17:22:30,847 - DEBUG - Taking top 8 variants by coverage in window 9:53164065-53164066
2012-10-07 17:22:32,087 - DEBUG - Taking top 8 variants by coverage in window 9:53178688-53178689
2012-10-07 17:22:32,127 - DEBUG - Taking top 8 variants by coverage in window 9:53178778-53178780
2012-10-07 17:22:33,262 - DEBUG - Taking top 8 variants by coverage in window 9:53197401-53197402
2012-10-07 17:22:34,177 - DEBUG - Taking top 8 variants by coverage in window 9:53208478-53208486
2012-10-07 17:22:34,375 - DEBUG - Taking top 8 variants by coverage in window 9:53211584-53211585
2012-10-07 17:22:34,595 - DEBUG - Taking top 8 variants by coverage in window 9:53214362-53214363
2012-10-07 17:22:35,169 - DEBUG - Taking top 8 variants by coverage in window 9:53222249-53222250
2012-10-07 17:22:35,198 - DEBUG - Taking top 8 variants by coverage in window 9:53222275-53222276
2012-10-07 17:22:35,901 - DEBUG - Taking top 8 variants by coverage in window 9:53234208-53234209
2012-10-07 17:22:36,388 - DEBUG - Taking top 8 variants by coverage in window 9:53238912-53238915
2012-10-07 17:22:36,474 - DEBUG - Taking top 8 variants by coverage in window 9:53238946-53238947
2012-10-07 17:22:36,926 - DEBUG - Taking top 8 variants by coverage in window 9:53244144-53244145
2012-10-07 17:22:37,247 - DEBUG - Taking top 8 variants by coverage in window 9:53247467-53247468
2012-10-07 17:22:37,445 - DEBUG - Taking top 8 variants by coverage in window 9:53248986-53248987
2012-10-07 17:22:37,543 - DEBUG - Taking top 8 variants by coverage in window 9:53249238-53249239
2012-10-07 17:22:37,559 - DEBUG - Taking top 8 variants by coverage in window 9:53249242-53249243
2012-10-07 17:22:37,780 - DEBUG - Taking top 8 variants by coverage in window 9:53251095-53251096
2012-10-07 17:22:37,794 - DEBUG - Taking top 8 variants by coverage in window 9:53251096-53251097
2012-10-07 17:22:38,895 - DEBUG - Taking top 8 variants by coverage in window 9:53260332-53260356
2012-10-07 17:22:40,003 - DEBUG - Taking top 8 variants by coverage in window 9:53275782-53275798
2012-10-07 17:22:40,115 - DEBUG - Taking top 8 variants by coverage in window 9:53276850-53276851
2012-10-07 17:22:40,684 - DEBUG - Taking top 8 variants by coverage in window 9:53283239-53283240
2012-10-07 17:22:41,996 - DEBUG - Taking top 8 variants by coverage in window 9:53297396-53297397
2012-10-07 17:22:42,709 - DEBUG - Taking top 8 variants by coverage in window 9:53303865-53303866
2012-10-07 17:22:44,374 - DEBUG - Taking top 8 variants by coverage in window 9:53318583-53318584
2012-10-07 17:22:44,750 - DEBUG - Taking top 8 variants by coverage in window 9:53323234-53323244
2012-10-07 17:22:46,015 - DEBUG - Taking top 8 variants by coverage in window 9:53341321-53341324
2012-10-07 17:22:46,056 - DEBUG - Taking top 8 variants by coverage in window 9:53341361-53341362
2012-10-07 17:22:46,593 - DEBUG - Taking top 8 variants by coverage in window 9:53349109-53349111
2012-10-07 17:22:46,729 - DEBUG - Taking top 8 variants by coverage in window 9:53350061-53350062
2012-10-07 17:22:46,801 - DEBUG - Taking top 8 variants by coverage in window 9:53350905-53350909
2012-10-07 17:22:47,123 - DEBUG - Taking top 8 variants by coverage in window 9:53355232-53355233
2012-10-07 17:22:47,171 - DEBUG - Taking top 8 variants by coverage in window 9:53355323-53355324
2012-10-07 17:22:47,470 - DEBUG - Taking top 8 variants by coverage in window 9:53360005-53360011
2012-10-07 17:22:50,534 - DEBUG - Taking top 8 variants by coverage in window 9:53404120-53404124
2012-10-07 17:22:50,888 - DEBUG - Taking top 8 variants by coverage in window 9:53409440-53409441
2012-10-07 17:22:50,972 - DEBUG - Taking top 8 variants by coverage in window 9:53410841-53410843
2012-10-07 17:22:51,004 - DEBUG - Taking top 8 variants by coverage in window 9:53411027-53411028
2012-10-07 17:22:51,020 - DEBUG - Taking top 8 variants by coverage in window 9:53411194-53411195
2012-10-07 17:22:51,297 - DEBUG - Taking top 8 variants by coverage in window 9:53414809-53414818
2012-10-07 17:22:51,992 - DEBUG - Taking top 8 variants by coverage in window 9:53426508-53426509
2012-10-07 17:22:52,216 - DEBUG - Taking top 8 variants by coverage in window 9:53428182-53428183
2012-10-07 17:22:52,569 - DEBUG - Taking top 8 variants by coverage in window 9:53434880-53434881
2012-10-07 17:22:52,591 - DEBUG - Taking top 8 variants by coverage in window 9:53434899-53434900
2012-10-07 17:22:52,836 - DEBUG - Taking top 8 variants by coverage in window 9:53438377-53438384
2012-10-07 17:22:53,029 - DEBUG - Taking top 8 variants by coverage in window 9:53441470-53441471
2012-10-07 17:22:53,925 - DEBUG - Taking top 8 variants by coverage in window 9:53453899-53453900
2012-10-07 17:22:54,397 - DEBUG - Taking top 8 variants by coverage in window 9:53459857-53459859
2012-10-07 17:22:55,758 - DEBUG - Taking top 8 variants by coverage in window 9:53481113-53481114
2012-10-07 17:22:55,893 - DEBUG - Taking top 8 variants by coverage in window 9:53482564-53482565
2012-10-07 17:22:56,454 - DEBUG - Taking top 8 variants by coverage in window 9:53488533-53488545
2012-10-07 17:22:56,755 - DEBUG - Taking top 8 variants by coverage in window 9:53491761-53491762
2012-10-07 17:22:56,985 - DEBUG - Taking top 8 variants by coverage in window 9:53495763-53495764
2012-10-07 17:22:57,746 - DEBUG - Taking top 8 variants by coverage in window 9:53502956-53502960
2012-10-07 17:22:57,990 - DEBUG - Taking top 8 variants by coverage in window 9:53503074-53503083
2012-10-07 17:22:58,305 - DEBUG - Taking top 8 variants by coverage in window 9:53505367-53505368
2012-10-07 17:22:58,612 - DEBUG - Taking top 8 variants by coverage in window 9:53508055-53508056
2012-10-07 17:22:59,246 - DEBUG - Taking top 8 variants by coverage in window 9:53515172-53515173
2012-10-07 17:22:59,346 - DEBUG - Taking top 8 variants by coverage in window 9:53515360-53515372
2012-10-07 17:22:59,597 - DEBUG - Taking top 8 variants by coverage in window 9:53517093-53517096
2012-10-07 17:22:59,612 - DEBUG - Taking top 8 variants by coverage in window 9:53517100-53517103
2012-10-07 17:22:59,980 - DEBUG - Taking top 8 variants by coverage in window 9:53519586-53519587
2012-10-07 17:23:00,244 - DEBUG - Taking top 8 variants by coverage in window 9:53523288-53523289
2012-10-07 17:23:01,080 - DEBUG - Taking top 8 variants by coverage in window 9:53583221-53583222
2012-10-07 17:23:01,165 - DEBUG - Taking top 8 variants by coverage in window 9:53583872-53583874
2012-10-07 17:23:01,466 - DEBUG - Taking top 8 variants by coverage in window 9:53586020-53586021
2012-10-07 17:23:01,613 - DEBUG - Taking top 8 variants by coverage in window 9:53587737-53587743
2012-10-07 17:23:01,957 - DEBUG - Taking top 8 variants by coverage in window 9:53590234-53590235
2012-10-07 17:23:02,847 - DEBUG - Taking top 8 variants by coverage in window 9:53596334-53596335
2012-10-07 17:23:03,127 - DEBUG - Taking top 8 variants by coverage in window 9:53597911-53597912
2012-10-07 17:23:04,352 - DEBUG - Taking top 8 variants by coverage in window 9:53610566-53610571
2012-10-07 17:23:04,583 - DEBUG - Taking top 8 variants by coverage in window 9:53613790-53613791
2012-10-07 17:23:04,738 - DEBUG - Taking top 8 variants by coverage in window 9:53614927-53614928
2012-10-07 17:23:04,774 - DEBUG - Taking top 8 variants by coverage in window 9:53614982-53614986
2012-10-07 17:23:04,886 - DEBUG - Taking top 8 variants by coverage in window 9:53614987-53614988
2012-10-07 17:23:05,482 - DEBUG - Taking top 8 variants by coverage in window 9:53622669-53622670
2012-10-07 17:23:06,193 - DEBUG - Taking top 8 variants by coverage in window 9:53626264-53626265
2012-10-07 17:23:06,332 - DEBUG - Taking top 8 variants by coverage in window 9:53627190-53627191
2012-10-07 17:23:06,466 - DEBUG - Taking top 8 variants by coverage in window 9:53627585-53627587
2012-10-07 17:23:06,532 - DEBUG - Taking top 8 variants by coverage in window 9:53627909-53627925
2012-10-07 17:23:06,766 - DEBUG - Taking top 8 variants by coverage in window 9:53629821-53629832
2012-10-07 17:23:06,948 - DEBUG - Taking top 8 variants by coverage in window 9:53631576-53631577
2012-10-07 17:23:07,245 - DEBUG - Taking top 8 variants by coverage in window 9:53633952-53633953
2012-10-07 17:23:08,460 - DEBUG - Taking top 8 variants by coverage in window 9:53642785-53642791
2012-10-07 17:23:08,948 - DEBUG - Taking top 8 variants by coverage in window 9:53646142-53646150
2012-10-07 17:23:10,587 - DEBUG - Taking top 8 variants by coverage in window 9:53662526-53662527
2012-10-07 17:23:11,176 - DEBUG - Taking top 8 variants by coverage in window 9:53666072-53666073
2012-10-07 17:23:11,614 - DEBUG - Taking top 8 variants by coverage in window 9:53669479-53669480
2012-10-07 17:23:11,632 - DEBUG - Taking top 8 variants by coverage in window 9:53669492-53669493
2012-10-07 17:23:11,704 - DEBUG - Taking top 8 variants by coverage in window 9:53670168-53670173
2012-10-07 17:23:12,194 - DEBUG - Taking top 8 variants by coverage in window 9:53675049-53675050
2012-10-07 17:23:12,217 - DEBUG - Taking top 8 variants by coverage in window 9:53675052-53675055
2012-10-07 17:23:12,336 - DEBUG - Taking top 8 variants by coverage in window 9:53675189-53675190
2012-10-07 17:23:12,583 - DEBUG - Taking top 8 variants by coverage in window 9:53677243-53677244
2012-10-07 17:23:12,852 - DEBUG - Taking top 8 variants by coverage in window 9:53680340-53680341
2012-10-07 17:23:12,873 - DEBUG - Taking top 8 variants by coverage in window 9:53680344-53680345
2012-10-07 17:23:13,314 - DEBUG - Taking top 8 variants by coverage in window 9:53683570-53683571
2012-10-07 17:23:14,267 - DEBUG - Taking top 8 variants by coverage in window 9:53692936-53692953
2012-10-07 17:23:14,279 - DEBUG - Taking top 8 variants by coverage in window 9:53692955-53692956
2012-10-07 17:23:14,299 - DEBUG - Taking top 8 variants by coverage in window 9:53692963-53692964
2012-10-07 17:23:16,265 - DEBUG - Taking top 8 variants by coverage in window 9:53718065-53718066
2012-10-07 17:23:17,092 - DEBUG - Taking top 8 variants by coverage in window 9:53722514-53722515
2012-10-07 17:23:17,166 - DEBUG - Taking top 8 variants by coverage in window 9:53722624-53722625
2012-10-07 17:23:17,176 - DEBUG - Taking top 8 variants by coverage in window 9:53722626-53722627
2012-10-07 17:23:18,020 - DEBUG - Taking top 8 variants by coverage in window 9:53728196-53728197
2012-10-07 17:23:19,834 - DEBUG - Taking top 8 variants by coverage in window 9:53744092-53744098
2012-10-07 17:23:19,945 - DEBUG - Taking top 8 variants by coverage in window 9:53744149-53744150
2012-10-07 17:23:20,111 - DEBUG - Taking top 8 variants by coverage in window 9:53745427-53745429
2012-10-07 17:23:20,971 - DEBUG - Taking top 8 variants by coverage in window 9:53755344-53755348
2012-10-07 17:23:21,732 - DEBUG - Taking top 8 variants by coverage in window 9:53761700-53761703
2012-10-07 17:23:22,823 - DEBUG - Taking top 8 variants by coverage in window 9:53768415-53768416
2012-10-07 17:23:22,873 - DEBUG - Taking top 8 variants by coverage in window 9:53768654-53768655
2012-10-07 17:23:23,240 - DEBUG - Taking top 8 variants by coverage in window 9:53773498-53773499
2012-10-07 17:23:23,400 - DEBUG - Taking top 8 variants by coverage in window 9:53775405-53775407
2012-10-07 17:23:23,998 - DEBUG - Taking top 8 variants by coverage in window 9:53780574-53780577
2012-10-07 17:23:25,155 - DEBUG - Taking top 8 variants by coverage in window 9:53792429-53792430
2012-10-07 17:23:26,116 - DEBUG - Taking top 8 variants by coverage in window 9:53801997-53802017
2012-10-07 17:23:26,582 - DEBUG - Taking top 8 variants by coverage in window 9:53813196-53813197
2012-10-07 17:23:27,366 - DEBUG - Taking top 8 variants by coverage in window 9:53825221-53825223
2012-10-07 17:23:27,727 - DEBUG - Taking top 8 variants by coverage in window 9:53829121-53829122
2012-10-07 17:23:29,678 - DEBUG - Taking top 8 variants by coverage in window 9:53844820-53844822
2012-10-07 17:23:31,505 - DEBUG - Taking top 8 variants by coverage in window 9:53859231-53859235
2012-10-07 17:23:32,433 - DEBUG - Taking top 8 variants by coverage in window 9:53859642-53859643
2012-10-07 17:23:32,592 - DEBUG - Taking top 8 variants by coverage in window 9:53860253-53860254
2012-10-07 17:23:32,930 - DEBUG - Taking top 8 variants by coverage in window 9:53862200-53862201
2012-10-07 17:23:33,076 - DEBUG - Taking top 8 variants by coverage in window 9:53863034-53863038
2012-10-07 17:23:33,088 - DEBUG - Taking top 8 variants by coverage in window 9:53863042-53863043
2012-10-07 17:23:33,242 - DEBUG - Taking top 8 variants by coverage in window 9:53863866-53863867
2012-10-07 17:23:33,320 - DEBUG - Taking top 8 variants by coverage in window 9:53863940-53863941
2012-10-07 17:23:33,521 - DEBUG - Taking top 8 variants by coverage in window 9:53868802-53868803
2012-10-07 17:23:33,543 - DEBUG - Taking top 8 variants by coverage in window 9:53868803-53868805
2012-10-07 17:23:33,709 - DEBUG - Taking top 8 variants by coverage in window 9:53868820-53868821
2012-10-07 17:23:34,681 - DEBUG - Taking top 8 variants by coverage in window 9:53875882-53875883
2012-10-07 17:23:35,212 - DEBUG - Taking top 8 variants by coverage in window 9:53881418-53881421
2012-10-07 17:23:35,298 - DEBUG - Taking top 8 variants by coverage in window 9:53881442-53881443
2012-10-07 17:23:35,704 - DEBUG - Taking top 8 variants by coverage in window 9:53885097-53885098
2012-10-07 17:23:35,774 - DEBUG - Taking top 8 variants by coverage in window 9:53886641-53886644
2012-10-07 17:23:37,277 - DEBUG - Taking top 8 variants by coverage in window 9:53910607-53910608
2012-10-07 17:23:37,814 - DEBUG - Taking top 8 variants by coverage in window 9:53922619-53922641
2012-10-07 17:23:38,963 - DEBUG - Taking top 8 variants by coverage in window 9:53944466-53944467
2012-10-07 17:23:40,274 - DEBUG - Taking top 8 variants by coverage in window 9:53961572-53961573
2012-10-07 17:23:41,011 - DEBUG - Taking top 8 variants by coverage in window 9:53969997-53970004
2012-10-07 17:23:41,036 - DEBUG - Taking top 8 variants by coverage in window 9:53970034-53970035
2012-10-07 17:23:41,211 - DEBUG - Taking top 8 variants by coverage in window 9:53972127-53972128
2012-10-07 17:23:41,218 - DEBUG - Taking top 8 variants by coverage in window 9:53972161-53972163
2012-10-07 17:23:41,402 - DEBUG - Taking top 8 variants by coverage in window 9:53979612-53979613
2012-10-07 17:23:41,509 - DEBUG - Taking top 8 variants by coverage in window 9:53980823-53980824
2012-10-07 17:23:41,581 - DEBUG - Taking top 8 variants by coverage in window 9:53980828-53980829
2012-10-07 17:23:41,877 - DEBUG - Taking top 8 variants by coverage in window 9:53983561-53983562
2012-10-07 17:23:41,950 - DEBUG - Taking top 8 variants by coverage in window 9:53984248-53984249
2012-10-07 17:23:41,972 - DEBUG - Taking top 8 variants by coverage in window 9:53984272-53984273
2012-10-07 17:23:42,405 - DEBUG - Taking top 8 variants by coverage in window 9:53994372-53994373
2012-10-07 17:23:43,706 - DEBUG - Read 98866 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 17:23:43,964 - DEBUG - Read 107681 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 17:23:44,237 - DEBUG - Read 124002 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 17:23:44,545 - DEBUG - Read 125801 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 17:23:44,840 - DEBUG - Read 117942 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 17:23:45,102 - DEBUG - Read 112487 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 17:23:45,375 - DEBUG - Read 119018 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 17:23:45,646 - DEBUG - Read 108927 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 17:23:45,896 - DEBUG - Read 103176 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 17:23:46,150 - DEBUG - Read 102308 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 17:23:46,424 - DEBUG - Read 114868 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 17:23:46,667 - DEBUG - Read 104610 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 17:23:46,923 - DEBUG - Read 105047 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 17:23:47,181 - DEBUG - Read 116571 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 17:23:47,464 - DEBUG - Read 126101 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 17:23:47,705 - DEBUG - Read 97531 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 17:23:47,967 - DEBUG - Read 119811 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 17:23:48,240 - DEBUG - Read 115484 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 17:23:48,475 - DEBUG - Read 101704 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 17:23:48,721 - DEBUG - Read 98946 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 17:23:48,814 - DEBUG - Detected 18723 variants in 98866 reads
2012-10-07 17:23:48,960 - DEBUG - Detected 26435 variants in 107681 reads
2012-10-07 17:23:49,149 - DEBUG - Detected 34301 variants in 124002 reads
2012-10-07 17:23:49,371 - DEBUG - Detected 43892 variants in 125801 reads
2012-10-07 17:23:49,623 - DEBUG - Detected 50063 variants in 117942 reads
2012-10-07 17:23:49,924 - DEBUG - Detected 55449 variants in 112487 reads
2012-10-07 17:23:50,237 - DEBUG - Detected 68731 variants in 119018 reads
2012-10-07 17:23:50,602 - DEBUG - Detected 73554 variants in 108927 reads
2012-10-07 17:23:50,985 - DEBUG - Detected 78706 variants in 103176 reads
2012-10-07 17:23:51,393 - DEBUG - Detected 84129 variants in 102308 reads
2012-10-07 17:23:51,839 - DEBUG - Detected 89046 variants in 114868 reads
2012-10-07 17:23:52,288 - DEBUG - Detected 93003 variants in 104610 reads
2012-10-07 17:23:52,807 - DEBUG - Detected 96793 variants in 105047 reads
2012-10-07 17:23:53,299 - DEBUG - Detected 101055 variants in 116571 reads
2012-10-07 17:23:53,819 - DEBUG - Detected 108210 variants in 126101 reads
2012-10-07 17:23:54,351 - DEBUG - Detected 113101 variants in 97531 reads
2012-10-07 17:23:54,922 - DEBUG - Detected 116569 variants in 119811 reads
2012-10-07 17:23:55,504 - DEBUG - Detected 120397 variants in 115484 reads
2012-10-07 17:23:56,159 - DEBUG - Detected 124408 variants in 101704 reads
2012-10-07 17:23:56,788 - DEBUG - Detected 128384 variants in 98946 reads
2012-10-07 17:23:58,237 - DEBUG - Taking top 8 variants by coverage in window 9:54016570-54016574
2012-10-07 17:23:58,284 - DEBUG - Taking top 8 variants by coverage in window 9:54016591-54016592
2012-10-07 17:23:59,361 - DEBUG - Taking top 8 variants by coverage in window 9:54030461-54030463
2012-10-07 17:23:59,884 - DEBUG - Taking top 8 variants by coverage in window 9:54048507-54048516
2012-10-07 17:24:00,133 - DEBUG - Taking top 8 variants by coverage in window 9:54053964-54053965
2012-10-07 17:24:00,187 - DEBUG - Taking top 8 variants by coverage in window 9:54054012-54054013
2012-10-07 17:24:00,922 - DEBUG - Taking top 8 variants by coverage in window 9:54078444-54078445
2012-10-07 17:24:01,160 - DEBUG - Taking top 8 variants by coverage in window 9:54084743-54084744
2012-10-07 17:24:01,748 - DEBUG - Taking top 8 variants by coverage in window 9:54099279-54099280
2012-10-07 17:24:03,136 - DEBUG - Taking top 8 variants by coverage in window 9:54118037-54118038
2012-10-07 17:24:03,158 - DEBUG - Taking top 8 variants by coverage in window 9:54118038-54118039
2012-10-07 17:24:04,474 - DEBUG - Taking top 8 variants by coverage in window 9:54130972-54130973
2012-10-07 17:24:05,003 - DEBUG - Taking top 8 variants by coverage in window 9:54137238-54137239
2012-10-07 17:24:05,062 - DEBUG - Taking top 8 variants by coverage in window 9:54137624-54137625
2012-10-07 17:24:05,118 - DEBUG - Taking top 8 variants by coverage in window 9:54137642-54137647
2012-10-07 17:24:06,961 - DEBUG - Taking top 8 variants by coverage in window 9:54138933-54138935
2012-10-07 17:24:08,067 - DEBUG - Taking top 8 variants by coverage in window 9:54157564-54157565
2012-10-07 17:24:08,788 - DEBUG - Taking top 8 variants by coverage in window 9:54164351-54164355
2012-10-07 17:24:08,848 - DEBUG - Taking top 8 variants by coverage in window 9:54165556-54165557
2012-10-07 17:24:09,940 - DEBUG - Taking top 8 variants by coverage in window 9:54176036-54176037
2012-10-07 17:24:10,054 - DEBUG - Taking top 8 variants by coverage in window 9:54176187-54176188
2012-10-07 17:24:10,688 - DEBUG - Taking top 8 variants by coverage in window 9:54183772-54183773
2012-10-07 17:24:11,148 - DEBUG - Taking top 8 variants by coverage in window 9:54189638-54189639
2012-10-07 17:24:11,299 - DEBUG - Taking top 8 variants by coverage in window 9:54190730-54190731
2012-10-07 17:24:12,148 - DEBUG - Taking top 8 variants by coverage in window 9:54196442-54196450
2012-10-07 17:24:12,845 - DEBUG - Taking top 8 variants by coverage in window 9:54200432-54200433
2012-10-07 17:24:13,212 - DEBUG - Taking top 8 variants by coverage in window 9:54204870-54204871
2012-10-07 17:24:13,272 - DEBUG - Taking top 8 variants by coverage in window 9:54211761-54211762
2012-10-07 17:24:13,741 - DEBUG - Taking top 8 variants by coverage in window 9:54217392-54217393
2012-10-07 17:24:14,690 - DEBUG - Taking top 8 variants by coverage in window 9:54228381-54228382
2012-10-07 17:24:14,704 - DEBUG - Taking top 8 variants by coverage in window 9:54228384-54228387
2012-10-07 17:24:14,717 - DEBUG - Taking top 8 variants by coverage in window 9:54228390-54228394
2012-10-07 17:24:14,731 - DEBUG - Taking top 8 variants by coverage in window 9:54228397-54228399
2012-10-07 17:24:15,083 - DEBUG - Taking top 8 variants by coverage in window 9:54235760-54235766
2012-10-07 17:24:15,941 - DEBUG - Taking top 8 variants by coverage in window 9:54256889-54256891
2012-10-07 17:24:16,253 - DEBUG - Taking top 8 variants by coverage in window 9:54265678-54265688
2012-10-07 17:24:16,509 - DEBUG - Taking top 8 variants by coverage in window 9:54267392-54267393
2012-10-07 17:24:16,520 - DEBUG - Taking top 8 variants by coverage in window 9:54267395-54267396
2012-10-07 17:24:16,626 - DEBUG - Taking top 8 variants by coverage in window 9:54267399-54267404
2012-10-07 17:24:16,847 - DEBUG - Taking top 8 variants by coverage in window 9:54267453-54267454
2012-10-07 17:24:17,242 - DEBUG - Taking top 8 variants by coverage in window 9:54275692-54275693
2012-10-07 17:24:17,558 - DEBUG - Taking top 8 variants by coverage in window 9:54278371-54278379
2012-10-07 17:24:17,613 - DEBUG - Taking top 8 variants by coverage in window 9:54278416-54278422
2012-10-07 17:24:17,955 - DEBUG - Taking top 8 variants by coverage in window 9:54282545-54282547
2012-10-07 17:24:18,088 - DEBUG - Taking top 8 variants by coverage in window 9:54285853-54285854
2012-10-07 17:24:19,076 - DEBUG - Taking top 8 variants by coverage in window 9:54310644-54310645
2012-10-07 17:24:19,555 - DEBUG - Taking top 8 variants by coverage in window 9:54326749-54326750
2012-10-07 17:24:20,396 - DEBUG - Taking top 8 variants by coverage in window 9:54347681-54347682
2012-10-07 17:24:20,954 - DEBUG - Taking top 8 variants by coverage in window 9:54360260-54360261
2012-10-07 17:24:21,003 - DEBUG - Taking top 8 variants by coverage in window 9:54360663-54360664
2012-10-07 17:24:21,074 - DEBUG - Taking top 8 variants by coverage in window 9:54360796-54360797
2012-10-07 17:24:21,586 - DEBUG - Taking top 8 variants by coverage in window 9:54367904-54367905
2012-10-07 17:24:22,338 - DEBUG - Taking top 8 variants by coverage in window 9:54379111-54379112
2012-10-07 17:24:23,874 - DEBUG - Taking top 8 variants by coverage in window 9:54400312-54400313
2012-10-07 17:24:23,896 - DEBUG - Taking top 8 variants by coverage in window 9:54400315-54400316
2012-10-07 17:24:25,060 - DEBUG - Taking top 8 variants by coverage in window 9:54413168-54413173
2012-10-07 17:24:26,726 - DEBUG - Taking top 8 variants by coverage in window 9:54432385-54432386
2012-10-07 17:24:27,350 - DEBUG - Taking top 8 variants by coverage in window 9:54443361-54443362
2012-10-07 17:24:28,511 - DEBUG - Taking top 8 variants by coverage in window 9:54457223-54457224
2012-10-07 17:24:28,758 - DEBUG - Taking top 8 variants by coverage in window 9:54458635-54458636
2012-10-07 17:24:28,783 - DEBUG - Taking top 8 variants by coverage in window 9:54458650-54458651
2012-10-07 17:24:29,049 - DEBUG - Taking top 8 variants by coverage in window 9:54459751-54459752
2012-10-07 17:24:29,067 - DEBUG - Taking top 8 variants by coverage in window 9:54459754-54459755
2012-10-07 17:24:29,082 - DEBUG - Taking top 8 variants by coverage in window 9:54459755-54459756
2012-10-07 17:24:29,904 - DEBUG - Taking top 8 variants by coverage in window 9:54467824-54467826
2012-10-07 17:24:29,985 - DEBUG - Taking top 8 variants by coverage in window 9:54468370-54468380
2012-10-07 17:24:30,229 - DEBUG - Taking top 8 variants by coverage in window 9:54471021-54471022
2012-10-07 17:24:31,028 - DEBUG - Taking top 8 variants by coverage in window 9:54477818-54477819
2012-10-07 17:24:31,044 - DEBUG - Taking top 8 variants by coverage in window 9:54477839-54477840
2012-10-07 17:24:31,172 - DEBUG - Taking top 8 variants by coverage in window 9:54478653-54478654
2012-10-07 17:24:31,246 - DEBUG - Taking top 8 variants by coverage in window 9:54478677-54478678
2012-10-07 17:24:31,397 - DEBUG - Taking top 8 variants by coverage in window 9:54479318-54479319
2012-10-07 17:24:31,449 - DEBUG - Taking top 8 variants by coverage in window 9:54479351-54479352
2012-10-07 17:24:32,005 - DEBUG - Taking top 8 variants by coverage in window 9:54488180-54488181
2012-10-07 17:24:32,801 - DEBUG - Taking top 8 variants by coverage in window 9:54499876-54499877
2012-10-07 17:24:33,083 - DEBUG - Taking top 8 variants by coverage in window 9:54503385-54503386
2012-10-07 17:24:33,097 - DEBUG - Taking top 8 variants by coverage in window 9:54503386-54503387
2012-10-07 17:24:33,195 - DEBUG - Taking top 8 variants by coverage in window 9:54505122-54505123
2012-10-07 17:24:33,281 - DEBUG - Taking top 8 variants by coverage in window 9:54506364-54506365
2012-10-07 17:24:33,512 - DEBUG - Taking top 8 variants by coverage in window 9:54508800-54508801
2012-10-07 17:24:34,115 - DEBUG - Taking top 8 variants by coverage in window 9:54515305-54515306
2012-10-07 17:24:34,249 - DEBUG - Taking top 8 variants by coverage in window 9:54517157-54517158
2012-10-07 17:24:34,609 - DEBUG - Taking top 8 variants by coverage in window 9:54521994-54521995
2012-10-07 17:24:35,433 - DEBUG - Taking top 8 variants by coverage in window 9:54530068-54530069
2012-10-07 17:24:35,454 - DEBUG - Taking top 8 variants by coverage in window 9:54530117-54530120
2012-10-07 17:24:35,514 - DEBUG - Taking top 8 variants by coverage in window 9:54530328-54530329
2012-10-07 17:24:35,643 - DEBUG - Taking top 8 variants by coverage in window 9:54531964-54531965
2012-10-07 17:24:35,904 - DEBUG - Taking top 8 variants by coverage in window 9:54534619-54534636
2012-10-07 17:24:36,615 - DEBUG - Taking top 8 variants by coverage in window 9:54545328-54545329
2012-10-07 17:24:36,628 - DEBUG - Taking top 8 variants by coverage in window 9:54545332-54545333
2012-10-07 17:24:36,934 - DEBUG - Taking top 8 variants by coverage in window 9:54552407-54552408
2012-10-07 17:24:37,261 - DEBUG - Taking top 8 variants by coverage in window 9:54556886-54556887
2012-10-07 17:24:37,420 - DEBUG - Taking top 8 variants by coverage in window 9:54557970-54557971
2012-10-07 17:24:37,441 - DEBUG - Taking top 8 variants by coverage in window 9:54557974-54557975
2012-10-07 17:24:37,568 - DEBUG - Taking top 8 variants by coverage in window 9:54559971-54559972
2012-10-07 17:24:37,583 - DEBUG - Taking top 8 variants by coverage in window 9:54559974-54559975
2012-10-07 17:24:38,274 - DEBUG - Taking top 8 variants by coverage in window 9:54581963-54581964
2012-10-07 17:24:38,364 - DEBUG - Taking top 8 variants by coverage in window 9:54584602-54584603
2012-10-07 17:24:38,695 - DEBUG - Taking top 8 variants by coverage in window 9:54589109-54589110
2012-10-07 17:24:38,723 - DEBUG - Taking top 8 variants by coverage in window 9:54589228-54589232
2012-10-07 17:24:38,779 - DEBUG - Taking top 8 variants by coverage in window 9:54589358-54589362
2012-10-07 17:24:38,920 - DEBUG - Taking top 8 variants by coverage in window 9:54592850-54592851
2012-10-07 17:24:39,207 - DEBUG - Taking top 8 variants by coverage in window 9:54602558-54602559
2012-10-07 17:24:39,895 - DEBUG - Taking top 8 variants by coverage in window 9:54621213-54621215
2012-10-07 17:24:40,014 - DEBUG - Taking top 8 variants by coverage in window 9:54622026-54622027
2012-10-07 17:24:40,094 - DEBUG - Taking top 8 variants by coverage in window 9:54622287-54622288
2012-10-07 17:24:40,272 - DEBUG - Taking top 8 variants by coverage in window 9:54626749-54626751
2012-10-07 17:24:40,292 - DEBUG - Taking top 8 variants by coverage in window 9:54626763-54626765
2012-10-07 17:24:40,485 - DEBUG - Taking top 8 variants by coverage in window 9:54628490-54628493
2012-10-07 17:24:40,506 - DEBUG - Taking top 8 variants by coverage in window 9:54628501-54628506
2012-10-07 17:24:41,016 - DEBUG - Taking top 8 variants by coverage in window 9:54637744-54637745
2012-10-07 17:24:41,027 - DEBUG - Taking top 8 variants by coverage in window 9:54637750-54637751
2012-10-07 17:24:41,421 - DEBUG - Taking top 8 variants by coverage in window 9:54648461-54648462
2012-10-07 17:24:41,487 - DEBUG - Taking top 8 variants by coverage in window 9:54648503-54648504
2012-10-07 17:24:41,668 - DEBUG - Taking top 8 variants by coverage in window 9:54649950-54649951
2012-10-07 17:24:42,224 - DEBUG - Taking top 8 variants by coverage in window 9:54658931-54658932
2012-10-07 17:24:43,006 - DEBUG - Taking top 8 variants by coverage in window 9:54662877-54662886
2012-10-07 17:24:43,141 - DEBUG - Taking top 8 variants by coverage in window 9:54663623-54663626
2012-10-07 17:24:43,170 - DEBUG - Taking top 8 variants by coverage in window 9:54663630-54663631
2012-10-07 17:24:43,781 - DEBUG - Taking top 8 variants by coverage in window 9:54670555-54670556
2012-10-07 17:24:43,931 - DEBUG - Taking top 8 variants by coverage in window 9:54672938-54672939
2012-10-07 17:24:43,963 - DEBUG - Taking top 8 variants by coverage in window 9:54672977-54672978
2012-10-07 17:24:44,084 - DEBUG - Taking top 8 variants by coverage in window 9:54674060-54674061
2012-10-07 17:24:44,118 - DEBUG - Taking top 8 variants by coverage in window 9:54674395-54674396
2012-10-07 17:24:44,380 - DEBUG - Taking top 8 variants by coverage in window 9:54677946-54677947
2012-10-07 17:24:44,622 - DEBUG - Taking top 8 variants by coverage in window 9:54679667-54679668
2012-10-07 17:24:44,857 - DEBUG - Taking top 8 variants by coverage in window 9:54681355-54681356
2012-10-07 17:24:45,362 - DEBUG - Taking top 8 variants by coverage in window 9:54689139-54689140
2012-10-07 17:24:45,931 - DEBUG - Taking top 8 variants by coverage in window 9:54694925-54694927
2012-10-07 17:24:46,000 - DEBUG - Taking top 8 variants by coverage in window 9:54694933-54694934
2012-10-07 17:24:46,029 - DEBUG - Taking top 8 variants by coverage in window 9:54694944-54694945
2012-10-07 17:24:46,127 - DEBUG - Taking top 8 variants by coverage in window 9:54694991-54694992
2012-10-07 17:24:46,145 - DEBUG - Taking top 8 variants by coverage in window 9:54694994-54694995
2012-10-07 17:24:47,209 - DEBUG - Taking top 8 variants by coverage in window 9:54706718-54706722
2012-10-07 17:24:48,028 - DEBUG - Taking top 8 variants by coverage in window 9:54706734-54706735
2012-10-07 17:24:48,419 - DEBUG - Taking top 8 variants by coverage in window 9:54706932-54706944
2012-10-07 17:24:48,830 - DEBUG - Taking top 8 variants by coverage in window 9:54716970-54716971
2012-10-07 17:24:49,263 - DEBUG - Taking top 8 variants by coverage in window 9:54730539-54730540
2012-10-07 17:24:49,302 - DEBUG - Taking top 8 variants by coverage in window 9:54731471-54731472
2012-10-07 17:24:49,603 - DEBUG - Taking top 8 variants by coverage in window 9:54740688-54740697
2012-10-07 17:24:49,631 - DEBUG - Taking top 8 variants by coverage in window 9:54740714-54740715
2012-10-07 17:24:51,074 - DEBUG - Taking top 8 variants by coverage in window 9:54779564-54779580
2012-10-07 17:24:51,306 - DEBUG - Taking top 8 variants by coverage in window 9:54784448-54784455
2012-10-07 17:24:52,444 - DEBUG - Taking top 8 variants by coverage in window 9:54798041-54798042
2012-10-07 17:24:52,853 - DEBUG - Taking top 8 variants by coverage in window 9:54806368-54806369
2012-10-07 17:24:54,153 - DEBUG - Taking top 8 variants by coverage in window 9:54819745-54819746
2012-10-07 17:24:54,214 - DEBUG - Taking top 8 variants by coverage in window 9:54821390-54821391
2012-10-07 17:24:54,365 - DEBUG - Taking top 8 variants by coverage in window 9:54822596-54822597
2012-10-07 17:24:54,424 - DEBUG - Taking top 8 variants by coverage in window 9:54822901-54822902
2012-10-07 17:24:55,645 - DEBUG - Taking top 8 variants by coverage in window 9:54846468-54846482
2012-10-07 17:24:55,852 - DEBUG - Taking top 8 variants by coverage in window 9:54849002-54849003
2012-10-07 17:24:55,979 - DEBUG - Taking top 8 variants by coverage in window 9:54849191-54849192
2012-10-07 17:24:56,017 - DEBUG - Taking top 8 variants by coverage in window 9:54849220-54849221
2012-10-07 17:24:57,663 - DEBUG - Taking top 8 variants by coverage in window 9:54878947-54878948
2012-10-07 17:24:57,834 - DEBUG - Taking top 8 variants by coverage in window 9:54880983-54880986
2012-10-07 17:24:57,937 - DEBUG - Taking top 8 variants by coverage in window 9:54880987-54880991
2012-10-07 17:24:58,168 - DEBUG - Taking top 8 variants by coverage in window 9:54881007-54881008
2012-10-07 17:24:58,199 - DEBUG - Taking top 8 variants by coverage in window 9:54881086-54881087
2012-10-07 17:24:58,651 - DEBUG - Taking top 8 variants by coverage in window 9:54885406-54885407
2012-10-07 17:24:58,785 - DEBUG - Taking top 8 variants by coverage in window 9:54886399-54886400
2012-10-07 17:24:59,255 - DEBUG - Taking top 8 variants by coverage in window 9:54891326-54891329
2012-10-07 17:24:59,738 - DEBUG - Taking top 8 variants by coverage in window 9:54897092-54897093
2012-10-07 17:25:00,094 - DEBUG - Taking top 8 variants by coverage in window 9:54900894-54900895
2012-10-07 17:25:00,278 - DEBUG - Taking top 8 variants by coverage in window 9:54904097-54904098
2012-10-07 17:25:00,539 - DEBUG - Taking top 8 variants by coverage in window 9:54905981-54905982
2012-10-07 17:25:00,755 - DEBUG - Taking top 8 variants by coverage in window 9:54907975-54907976
2012-10-07 17:25:01,622 - DEBUG - Taking top 8 variants by coverage in window 9:54918574-54918575
2012-10-07 17:25:02,508 - DEBUG - Taking top 8 variants by coverage in window 9:54936446-54936452
2012-10-07 17:25:02,834 - DEBUG - Taking top 8 variants by coverage in window 9:54941310-54941311
2012-10-07 17:25:03,381 - DEBUG - Taking top 8 variants by coverage in window 9:54945762-54945763
2012-10-07 17:25:03,551 - DEBUG - Taking top 8 variants by coverage in window 9:54947292-54947293
2012-10-07 17:25:03,837 - DEBUG - Taking top 8 variants by coverage in window 9:54949600-54949602
2012-10-07 17:25:04,856 - DEBUG - Taking top 8 variants by coverage in window 9:54955552-54955553
2012-10-07 17:25:05,711 - DEBUG - Taking top 8 variants by coverage in window 9:54964223-54964224
2012-10-07 17:25:05,745 - DEBUG - Taking top 8 variants by coverage in window 9:54964505-54964506
2012-10-07 17:25:05,764 - DEBUG - Taking top 8 variants by coverage in window 9:54964684-54964695
2012-10-07 17:25:05,774 - DEBUG - Taking top 8 variants by coverage in window 9:54964714-54964715
2012-10-07 17:25:06,239 - DEBUG - Taking top 8 variants by coverage in window 9:54971852-54971854
2012-10-07 17:25:06,330 - DEBUG - Taking top 8 variants by coverage in window 9:54971866-54971867
2012-10-07 17:25:06,788 - DEBUG - Taking top 8 variants by coverage in window 9:54974918-54974919
2012-10-07 17:25:06,919 - DEBUG - Taking top 8 variants by coverage in window 9:54977423-54977424
2012-10-07 17:25:07,115 - DEBUG - Taking top 8 variants by coverage in window 9:54979103-54979110
2012-10-07 17:25:07,240 - DEBUG - Taking top 8 variants by coverage in window 9:54980048-54980051
2012-10-07 17:25:07,264 - DEBUG - Taking top 8 variants by coverage in window 9:54980245-54980246
2012-10-07 17:25:07,562 - DEBUG - Taking top 8 variants by coverage in window 9:54982724-54982726
2012-10-07 17:25:07,589 - DEBUG - Taking top 8 variants by coverage in window 9:54982739-54982740
2012-10-07 17:25:08,000 - DEBUG - Taking top 8 variants by coverage in window 9:54987340-54987354
2012-10-07 17:25:08,144 - DEBUG - Taking top 8 variants by coverage in window 9:54989361-54989362
2012-10-07 17:25:08,516 - DEBUG - Taking top 8 variants by coverage in window 9:54993646-54993653
2012-10-07 17:25:09,588 - INFO - Processing region 9:55000000-56000000
2012-10-07 17:25:09,815 - DEBUG - Read 91217 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 17:25:10,052 - DEBUG - Read 98654 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 17:25:10,310 - DEBUG - Read 115871 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 17:25:10,597 - DEBUG - Read 116349 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 17:25:10,878 - DEBUG - Read 109998 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 17:25:11,123 - DEBUG - Read 104644 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 17:25:11,380 - DEBUG - Read 110917 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 17:25:11,626 - DEBUG - Read 99078 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 17:25:11,917 - DEBUG - Read 94327 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 17:25:12,155 - DEBUG - Read 96423 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 17:25:12,411 - DEBUG - Read 106739 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 17:25:12,635 - DEBUG - Read 94244 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 17:25:12,869 - DEBUG - Read 96431 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 17:25:13,111 - DEBUG - Read 107314 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 17:25:13,377 - DEBUG - Read 116709 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 17:25:13,598 - DEBUG - Read 88423 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 17:25:13,846 - DEBUG - Read 111223 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 17:25:14,105 - DEBUG - Read 107430 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 17:25:14,317 - DEBUG - Read 90362 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 17:25:14,551 - DEBUG - Read 92380 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 17:25:14,639 - DEBUG - Detected 17127 variants in 91217 reads
2012-10-07 17:25:14,777 - DEBUG - Detected 23235 variants in 98654 reads
2012-10-07 17:25:14,950 - DEBUG - Detected 32455 variants in 115871 reads
2012-10-07 17:25:15,179 - DEBUG - Detected 38592 variants in 116349 reads
2012-10-07 17:25:15,410 - DEBUG - Detected 44109 variants in 109998 reads
2012-10-07 17:25:15,662 - DEBUG - Detected 50847 variants in 104644 reads
2012-10-07 17:25:15,955 - DEBUG - Detected 62728 variants in 110917 reads
2012-10-07 17:25:16,297 - DEBUG - Detected 69048 variants in 99078 reads
2012-10-07 17:25:16,660 - DEBUG - Detected 73607 variants in 94327 reads
2012-10-07 17:25:17,045 - DEBUG - Detected 77531 variants in 96423 reads
2012-10-07 17:25:17,459 - DEBUG - Detected 81915 variants in 106739 reads
2012-10-07 17:25:17,913 - DEBUG - Detected 85352 variants in 94244 reads
2012-10-07 17:25:18,354 - DEBUG - Detected 88740 variants in 96431 reads
2012-10-07 17:25:18,819 - DEBUG - Detected 92564 variants in 107314 reads
2012-10-07 17:25:19,307 - DEBUG - Detected 99019 variants in 116709 reads
2012-10-07 17:25:19,801 - DEBUG - Detected 102120 variants in 88423 reads
2012-10-07 17:25:20,332 - DEBUG - Detected 105828 variants in 111223 reads
2012-10-07 17:25:20,875 - DEBUG - Detected 109652 variants in 107430 reads
2012-10-07 17:25:21,474 - DEBUG - Detected 113219 variants in 90362 reads
2012-10-07 17:25:22,038 - DEBUG - Detected 117102 variants in 92380 reads
2012-10-07 17:25:23,468 - DEBUG - Taking top 8 variants by coverage in window 9:55018808-55018810
2012-10-07 17:25:23,610 - DEBUG - Taking top 8 variants by coverage in window 9:55020736-55020737
2012-10-07 17:25:23,621 - DEBUG - Taking top 8 variants by coverage in window 9:55020738-55020739
2012-10-07 17:25:23,756 - DEBUG - Taking top 8 variants by coverage in window 9:55022620-55022622
2012-10-07 17:25:24,119 - DEBUG - Taking top 8 variants by coverage in window 9:55030376-55030386
2012-10-07 17:25:24,416 - DEBUG - Taking top 8 variants by coverage in window 9:55037742-55037743
2012-10-07 17:25:24,466 - DEBUG - Taking top 8 variants by coverage in window 9:55037764-55037765
2012-10-07 17:25:24,530 - DEBUG - Taking top 8 variants by coverage in window 9:55038931-55038932
2012-10-07 17:25:25,465 - DEBUG - Taking top 8 variants by coverage in window 9:55057294-55057297
2012-10-07 17:25:25,801 - DEBUG - Taking top 8 variants by coverage in window 9:55061704-55061708
2012-10-07 17:25:25,888 - DEBUG - Taking top 8 variants by coverage in window 9:55061802-55061803
2012-10-07 17:25:25,909 - DEBUG - Taking top 8 variants by coverage in window 9:55061816-55061818
2012-10-07 17:25:26,042 - DEBUG - Taking top 8 variants by coverage in window 9:55062706-55062707
2012-10-07 17:25:26,579 - DEBUG - Taking top 8 variants by coverage in window 9:55068825-55068826
2012-10-07 17:25:26,909 - DEBUG - Taking top 8 variants by coverage in window 9:55071045-55071046
2012-10-07 17:25:27,400 - DEBUG - Taking top 8 variants by coverage in window 9:55075194-55075195
2012-10-07 17:25:27,488 - DEBUG - Taking top 8 variants by coverage in window 9:55075320-55075321
2012-10-07 17:25:27,512 - DEBUG - Taking top 8 variants by coverage in window 9:55075325-55075327
2012-10-07 17:25:27,745 - DEBUG - Taking top 8 variants by coverage in window 9:55076731-55076732
2012-10-07 17:25:28,525 - DEBUG - Taking top 8 variants by coverage in window 9:55085716-55085717
2012-10-07 17:25:30,060 - DEBUG - Taking top 8 variants by coverage in window 9:55106982-55106983
2012-10-07 17:25:30,787 - DEBUG - Taking top 8 variants by coverage in window 9:55112916-55112917
2012-10-07 17:25:31,380 - DEBUG - Taking top 8 variants by coverage in window 9:55120787-55120788
2012-10-07 17:25:31,441 - DEBUG - Taking top 8 variants by coverage in window 9:55120835-55120836
2012-10-07 17:25:32,440 - DEBUG - Taking top 8 variants by coverage in window 9:55141744-55141746
2012-10-07 17:25:32,475 - DEBUG - Taking top 8 variants by coverage in window 9:55141850-55141851
2012-10-07 17:25:32,928 - DEBUG - Taking top 8 variants by coverage in window 9:55147224-55147229
2012-10-07 17:25:33,051 - DEBUG - Taking top 8 variants by coverage in window 9:55147276-55147277
2012-10-07 17:25:33,167 - DEBUG - Taking top 8 variants by coverage in window 9:55148075-55148077
2012-10-07 17:25:33,205 - DEBUG - Taking top 8 variants by coverage in window 9:55148265-55148266
2012-10-07 17:25:34,161 - DEBUG - Taking top 8 variants by coverage in window 9:55160324-55160325
2012-10-07 17:25:34,841 - DEBUG - Taking top 8 variants by coverage in window 9:55173178-55173180
2012-10-07 17:25:34,875 - DEBUG - Taking top 8 variants by coverage in window 9:55173715-55173716
2012-10-07 17:25:35,136 - DEBUG - Taking top 8 variants by coverage in window 9:55181728-55181729
2012-10-07 17:25:35,679 - DEBUG - Taking top 8 variants by coverage in window 9:55189463-55189473
2012-10-07 17:25:37,135 - DEBUG - Taking top 8 variants by coverage in window 9:55210049-55210050
2012-10-07 17:25:37,252 - DEBUG - Taking top 8 variants by coverage in window 9:55210948-55210949
2012-10-07 17:25:38,293 - DEBUG - Taking top 8 variants by coverage in window 9:55226225-55226237
2012-10-07 17:25:41,815 - DEBUG - Taking top 8 variants by coverage in window 9:55226320-55226321
2012-10-07 17:25:42,176 - DEBUG - Taking top 8 variants by coverage in window 9:55230151-55230152
2012-10-07 17:25:42,471 - DEBUG - Taking top 8 variants by coverage in window 9:55232880-55232881
2012-10-07 17:25:42,691 - DEBUG - Taking top 8 variants by coverage in window 9:55234352-55234353
2012-10-07 17:25:42,732 - DEBUG - Taking top 8 variants by coverage in window 9:55234367-55234368
2012-10-07 17:25:42,787 - DEBUG - Taking top 8 variants by coverage in window 9:55235449-55235451
2012-10-07 17:25:43,294 - DEBUG - Taking top 8 variants by coverage in window 9:55243917-55243918
2012-10-07 17:25:44,681 - DEBUG - Taking top 8 variants by coverage in window 9:55259656-55259657
2012-10-07 17:25:45,116 - DEBUG - Taking top 8 variants by coverage in window 9:55264071-55264073
2012-10-07 17:25:45,271 - DEBUG - Taking top 8 variants by coverage in window 9:55264244-55264245
2012-10-07 17:25:45,350 - DEBUG - Taking top 8 variants by coverage in window 9:55264390-55264391
2012-10-07 17:25:45,582 - DEBUG - Taking top 8 variants by coverage in window 9:55266137-55266148
2012-10-07 17:25:45,744 - DEBUG - Taking top 8 variants by coverage in window 9:55267254-55267255
2012-10-07 17:25:46,117 - DEBUG - Taking top 8 variants by coverage in window 9:55270137-55270139
2012-10-07 17:25:46,214 - DEBUG - Taking top 8 variants by coverage in window 9:55270222-55270223
2012-10-07 17:25:46,642 - DEBUG - Taking top 8 variants by coverage in window 9:55274021-55274022
2012-10-07 17:25:46,724 - DEBUG - Taking top 8 variants by coverage in window 9:55275597-55275598
2012-10-07 17:25:47,490 - DEBUG - Taking top 8 variants by coverage in window 9:55281193-55281194
2012-10-07 17:25:47,556 - DEBUG - Taking top 8 variants by coverage in window 9:55281879-55281880
2012-10-07 17:25:47,877 - DEBUG - Taking top 8 variants by coverage in window 9:55284844-55284845
2012-10-07 17:25:48,057 - DEBUG - Taking top 8 variants by coverage in window 9:55288758-55288759
2012-10-07 17:25:48,200 - DEBUG - Taking top 8 variants by coverage in window 9:55290612-55290613
2012-10-07 17:25:48,690 - DEBUG - Taking top 8 variants by coverage in window 9:55298405-55298406
2012-10-07 17:25:48,838 - DEBUG - Taking top 8 variants by coverage in window 9:55300624-55300625
2012-10-07 17:25:49,311 - DEBUG - Taking top 8 variants by coverage in window 9:55307900-55307901
2012-10-07 17:25:49,339 - DEBUG - Taking top 8 variants by coverage in window 9:55307902-55307903
2012-10-07 17:25:49,902 - DEBUG - Taking top 8 variants by coverage in window 9:55328790-55328795
2012-10-07 17:25:50,249 - DEBUG - Taking top 8 variants by coverage in window 9:55333428-55333432
2012-10-07 17:25:50,658 - DEBUG - Taking top 8 variants by coverage in window 9:55345645-55345655
2012-10-07 17:25:51,329 - DEBUG - Taking top 8 variants by coverage in window 9:55358695-55358696
2012-10-07 17:25:51,622 - DEBUG - Taking top 8 variants by coverage in window 9:55363147-55363151
2012-10-07 17:25:52,945 - DEBUG - Taking top 8 variants by coverage in window 9:55382368-55382369
2012-10-07 17:25:53,230 - DEBUG - Taking top 8 variants by coverage in window 9:55386632-55386633
2012-10-07 17:25:53,601 - DEBUG - Taking top 8 variants by coverage in window 9:55399545-55399559
2012-10-07 17:25:54,040 - DEBUG - Taking top 8 variants by coverage in window 9:55410131-55410133
2012-10-07 17:25:54,078 - DEBUG - Taking top 8 variants by coverage in window 9:55410134-55410135
2012-10-07 17:25:54,160 - DEBUG - Taking top 8 variants by coverage in window 9:55410154-55410155
2012-10-07 17:25:54,891 - DEBUG - Taking top 8 variants by coverage in window 9:55426854-55426855
2012-10-07 17:25:55,039 - DEBUG - Taking top 8 variants by coverage in window 9:55431129-55431130
2012-10-07 17:25:56,011 - DEBUG - Taking top 8 variants by coverage in window 9:55445680-55445681
2012-10-07 17:25:56,059 - DEBUG - Taking top 8 variants by coverage in window 9:55445886-55445887
2012-10-07 17:25:56,745 - DEBUG - Taking top 8 variants by coverage in window 9:55466326-55466327
2012-10-07 17:25:57,584 - DEBUG - Taking top 8 variants by coverage in window 9:55492787-55492788
2012-10-07 17:25:57,749 - DEBUG - Taking top 8 variants by coverage in window 9:55496659-55496660
2012-10-07 17:25:58,208 - DEBUG - Taking top 8 variants by coverage in window 9:55510388-55510398
2012-10-07 17:25:58,228 - DEBUG - Taking top 8 variants by coverage in window 9:55510408-55510409
2012-10-07 17:25:58,315 - DEBUG - Taking top 8 variants by coverage in window 9:55510802-55510803
2012-10-07 17:26:01,182 - DEBUG - Taking top 8 variants by coverage in window 9:55584453-55584467
2012-10-07 17:26:01,764 - DEBUG - Taking top 8 variants by coverage in window 9:55603104-55603105
2012-10-07 17:26:02,441 - DEBUG - Taking top 8 variants by coverage in window 9:55625502-55625503
2012-10-07 17:26:03,923 - DEBUG - Taking top 8 variants by coverage in window 9:55664873-55664874
2012-10-07 17:26:05,303 - DEBUG - Taking top 8 variants by coverage in window 9:55711190-55711191
2012-10-07 17:26:05,892 - DEBUG - Taking top 8 variants by coverage in window 9:55726438-55726439
2012-10-07 17:26:05,963 - DEBUG - Taking top 8 variants by coverage in window 9:55729472-55729474
2012-10-07 17:26:07,305 - DEBUG - Taking top 8 variants by coverage in window 9:55752546-55752547
2012-10-07 17:26:07,489 - DEBUG - Taking top 8 variants by coverage in window 9:55755632-55755633
2012-10-07 17:26:07,502 - DEBUG - Taking top 8 variants by coverage in window 9:55755642-55755643
2012-10-07 17:26:08,324 - DEBUG - Taking top 8 variants by coverage in window 9:55776163-55776166
2012-10-07 17:26:08,426 - DEBUG - Taking top 8 variants by coverage in window 9:55780460-55780461
2012-10-07 17:26:08,435 - DEBUG - Taking top 8 variants by coverage in window 9:55780461-55780462
2012-10-07 17:26:08,694 - DEBUG - Taking top 8 variants by coverage in window 9:55787908-55787909
2012-10-07 17:26:09,051 - DEBUG - Taking top 8 variants by coverage in window 9:55793540-55793542
2012-10-07 17:26:09,758 - DEBUG - Taking top 8 variants by coverage in window 9:55801740-55801741
2012-10-07 17:26:09,808 - DEBUG - Taking top 8 variants by coverage in window 9:55801842-55801843
2012-10-07 17:26:10,480 - DEBUG - Taking top 8 variants by coverage in window 9:55812370-55812371
2012-10-07 17:26:10,724 - DEBUG - Taking top 8 variants by coverage in window 9:55818700-55818701
2012-10-07 17:26:11,528 - DEBUG - Taking top 8 variants by coverage in window 9:55829645-55829646
2012-10-07 17:26:14,148 - DEBUG - Taking top 8 variants by coverage in window 9:55851567-55851568
2012-10-07 17:26:14,344 - DEBUG - Taking top 8 variants by coverage in window 9:55853537-55853538
2012-10-07 17:26:14,541 - DEBUG - Taking top 8 variants by coverage in window 9:55854396-55854398
2012-10-07 17:26:14,589 - DEBUG - Taking top 8 variants by coverage in window 9:55854487-55854490
2012-10-07 17:26:14,645 - DEBUG - Taking top 8 variants by coverage in window 9:55854505-55854509
2012-10-07 17:26:15,328 - DEBUG - Taking top 8 variants by coverage in window 9:55858108-55858109
2012-10-07 17:26:17,290 - DEBUG - Taking top 8 variants by coverage in window 9:55886044-55886045
2012-10-07 17:26:17,673 - DEBUG - Taking top 8 variants by coverage in window 9:55893153-55893154
2012-10-07 17:26:18,765 - DEBUG - Taking top 8 variants by coverage in window 9:55910695-55910703
2012-10-07 17:26:18,889 - DEBUG - Taking top 8 variants by coverage in window 9:55911779-55911785
2012-10-07 17:26:20,071 - DEBUG - Taking top 8 variants by coverage in window 9:55930441-55930443
2012-10-07 17:26:20,960 - DEBUG - Taking top 8 variants by coverage in window 9:55942084-55942085
2012-10-07 17:26:21,764 - DEBUG - Taking top 8 variants by coverage in window 9:55953080-55953081
2012-10-07 17:26:23,487 - DEBUG - Taking top 8 variants by coverage in window 9:55973541-55973542
2012-10-07 17:26:23,537 - DEBUG - Taking top 8 variants by coverage in window 9:55974079-55974081
2012-10-07 17:26:23,742 - DEBUG - Taking top 8 variants by coverage in window 9:55975791-55975792
2012-10-07 17:26:24,175 - DEBUG - Taking top 8 variants by coverage in window 9:55980419-55980420
2012-10-07 17:26:24,199 - DEBUG - Taking top 8 variants by coverage in window 9:55980421-55980426
2012-10-07 17:26:26,525 - DEBUG - Read 104138 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 17:26:26,786 - DEBUG - Read 113084 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 17:26:27,063 - DEBUG - Read 129562 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 17:26:27,380 - DEBUG - Read 133207 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 17:26:27,677 - DEBUG - Read 123305 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 17:26:27,941 - DEBUG - Read 117908 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 17:26:28,214 - DEBUG - Read 123749 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 17:26:28,488 - DEBUG - Read 115308 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 17:26:28,742 - DEBUG - Read 109491 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 17:26:28,997 - DEBUG - Read 106834 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 17:26:29,274 - DEBUG - Read 119477 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 17:26:29,519 - DEBUG - Read 108875 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 17:26:29,780 - DEBUG - Read 111800 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 17:26:30,041 - DEBUG - Read 122333 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 17:26:30,329 - DEBUG - Read 131924 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 17:26:30,571 - DEBUG - Read 101095 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 17:26:30,841 - DEBUG - Read 126210 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 17:26:31,117 - DEBUG - Read 119785 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 17:26:31,360 - DEBUG - Read 108215 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 17:26:31,614 - DEBUG - Read 104401 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 17:26:31,712 - DEBUG - Detected 19749 variants in 104138 reads
2012-10-07 17:26:31,867 - DEBUG - Detected 28741 variants in 113084 reads
2012-10-07 17:26:32,071 - DEBUG - Detected 36291 variants in 129562 reads
2012-10-07 17:26:32,308 - DEBUG - Detected 43868 variants in 133207 reads
2012-10-07 17:26:32,569 - DEBUG - Detected 49705 variants in 123305 reads
2012-10-07 17:26:32,880 - DEBUG - Detected 55717 variants in 117908 reads
2012-10-07 17:26:33,205 - DEBUG - Detected 69552 variants in 123749 reads
2012-10-07 17:26:33,586 - DEBUG - Detected 74858 variants in 115308 reads
2012-10-07 17:26:33,990 - DEBUG - Detected 80670 variants in 109491 reads
2012-10-07 17:26:34,418 - DEBUG - Detected 85977 variants in 106834 reads
2012-10-07 17:26:34,876 - DEBUG - Detected 90259 variants in 119477 reads
2012-10-07 17:26:35,340 - DEBUG - Detected 93739 variants in 108875 reads
2012-10-07 17:26:35,862 - DEBUG - Detected 97645 variants in 111800 reads
2012-10-07 17:26:36,374 - DEBUG - Detected 101884 variants in 122333 reads
2012-10-07 17:26:36,912 - DEBUG - Detected 109208 variants in 131924 reads
2012-10-07 17:26:37,462 - DEBUG - Detected 112892 variants in 101095 reads
2012-10-07 17:26:38,045 - DEBUG - Detected 116596 variants in 126210 reads
2012-10-07 17:26:38,643 - DEBUG - Detected 120623 variants in 119785 reads
2012-10-07 17:26:39,301 - DEBUG - Detected 125225 variants in 108215 reads
2012-10-07 17:26:39,924 - DEBUG - Detected 129936 variants in 104401 reads
2012-10-07 17:26:41,556 - DEBUG - Taking top 8 variants by coverage in window 9:56006479-56006480
2012-10-07 17:26:41,575 - DEBUG - Taking top 8 variants by coverage in window 9:56006481-56006482
2012-10-07 17:26:41,618 - DEBUG - Taking top 8 variants by coverage in window 9:56006502-56006503
2012-10-07 17:26:41,994 - DEBUG - Taking top 8 variants by coverage in window 9:56010986-56010987
2012-10-07 17:26:42,325 - DEBUG - Taking top 8 variants by coverage in window 9:56014697-56014698
2012-10-07 17:26:43,567 - DEBUG - Taking top 8 variants by coverage in window 9:56032362-56032363
2012-10-07 17:26:45,785 - DEBUG - Taking top 8 variants by coverage in window 9:56071763-56071764
2012-10-07 17:26:45,838 - DEBUG - Taking top 8 variants by coverage in window 9:56072206-56072207
2012-10-07 17:26:46,061 - DEBUG - Taking top 8 variants by coverage in window 9:56077334-56077335
2012-10-07 17:26:46,755 - DEBUG - Taking top 8 variants by coverage in window 9:56089455-56089459
2012-10-07 17:26:47,056 - DEBUG - Taking top 8 variants by coverage in window 9:56093545-56093547
2012-10-07 17:26:48,213 - DEBUG - Taking top 8 variants by coverage in window 9:56115064-56115068
2012-10-07 17:26:49,377 - DEBUG - Taking top 8 variants by coverage in window 9:56129123-56129124
2012-10-07 17:26:50,065 - DEBUG - Taking top 8 variants by coverage in window 9:56144250-56144251
2012-10-07 17:26:50,922 - DEBUG - Taking top 8 variants by coverage in window 9:56164705-56164716
2012-10-07 17:26:51,976 - DEBUG - Taking top 8 variants by coverage in window 9:56181279-56181288
2012-10-07 17:26:52,611 - DEBUG - Taking top 8 variants by coverage in window 9:56192903-56192904
2012-10-07 17:26:53,734 - DEBUG - Taking top 8 variants by coverage in window 9:56213143-56213144
2012-10-07 17:26:55,283 - DEBUG - Taking top 8 variants by coverage in window 9:56238955-56238956
2012-10-07 17:26:56,893 - DEBUG - Taking top 8 variants by coverage in window 9:56270339-56270340
2012-10-07 17:26:57,039 - DEBUG - Taking top 8 variants by coverage in window 9:56271418-56271419
2012-10-07 17:26:57,070 - DEBUG - Taking top 8 variants by coverage in window 9:56271450-56271452
2012-10-07 17:26:57,301 - DEBUG - Taking top 8 variants by coverage in window 9:56275840-56275841
2012-10-07 17:26:57,315 - DEBUG - Taking top 8 variants by coverage in window 9:56275841-56275842
2012-10-07 17:26:57,389 - DEBUG - Taking top 8 variants by coverage in window 9:56277156-56277157
2012-10-07 17:26:58,236 - DEBUG - Taking top 8 variants by coverage in window 9:56290932-56290933
2012-10-07 17:26:58,827 - DEBUG - Taking top 8 variants by coverage in window 9:56299110-56299114
2012-10-07 17:26:59,134 - DEBUG - Taking top 8 variants by coverage in window 9:56300218-56300224
2012-10-07 17:26:59,161 - DEBUG - Taking top 8 variants by coverage in window 9:56300361-56300372
2012-10-07 17:26:59,602 - DEBUG - Taking top 8 variants by coverage in window 9:56305051-56305052
2012-10-07 17:27:00,422 - DEBUG - Taking top 8 variants by coverage in window 9:56325422-56325423
2012-10-07 17:27:01,069 - DEBUG - Taking top 8 variants by coverage in window 9:56337098-56337099
2012-10-07 17:27:01,190 - DEBUG - Taking top 8 variants by coverage in window 9:56339338-56339339
2012-10-07 17:27:01,799 - DEBUG - Taking top 8 variants by coverage in window 9:56349579-56349580
2012-10-07 17:27:02,251 - DEBUG - Taking top 8 variants by coverage in window 9:56359470-56359471
2012-10-07 17:27:02,716 - DEBUG - Taking top 8 variants by coverage in window 9:56366543-56366544
2012-10-07 17:27:03,370 - DEBUG - Taking top 8 variants by coverage in window 9:56372708-56372709
2012-10-07 17:27:03,423 - DEBUG - Taking top 8 variants by coverage in window 9:56372795-56372796
2012-10-07 17:27:03,676 - DEBUG - Taking top 8 variants by coverage in window 9:56374200-56374201
2012-10-07 17:27:03,688 - DEBUG - Taking top 8 variants by coverage in window 9:56374209-56374210
2012-10-07 17:27:04,308 - DEBUG - Taking top 8 variants by coverage in window 9:56380128-56380131
2012-10-07 17:27:04,738 - DEBUG - Taking top 8 variants by coverage in window 9:56384752-56384754
2012-10-07 17:27:05,171 - DEBUG - Taking top 8 variants by coverage in window 9:56390105-56390106
2012-10-07 17:27:05,194 - DEBUG - Taking top 8 variants by coverage in window 9:56390124-56390125
2012-10-07 17:27:05,568 - DEBUG - Taking top 8 variants by coverage in window 9:56392850-56392862
2012-10-07 17:27:05,625 - DEBUG - Taking top 8 variants by coverage in window 9:56392900-56392901
2012-10-07 17:27:06,032 - DEBUG - Taking top 8 variants by coverage in window 9:56398696-56398697
2012-10-07 17:27:06,541 - DEBUG - Taking top 8 variants by coverage in window 9:56406142-56406143
2012-10-07 17:27:07,253 - DEBUG - Taking top 8 variants by coverage in window 9:56415162-56415163
2012-10-07 17:27:07,900 - DEBUG - Taking top 8 variants by coverage in window 9:56424335-56424341
2012-10-07 17:27:09,880 - DEBUG - Taking top 8 variants by coverage in window 9:56451272-56451280
2012-10-07 17:27:10,210 - DEBUG - Taking top 8 variants by coverage in window 9:56452208-56452209
2012-10-07 17:27:11,093 - DEBUG - Taking top 8 variants by coverage in window 9:56464234-56464235
2012-10-07 17:27:11,543 - DEBUG - Taking top 8 variants by coverage in window 9:56473222-56473223
2012-10-07 17:27:11,959 - DEBUG - Taking top 8 variants by coverage in window 9:56481089-56481096
2012-10-07 17:27:13,745 - DEBUG - Taking top 8 variants by coverage in window 9:56510956-56510957
2012-10-07 17:27:14,432 - DEBUG - Taking top 8 variants by coverage in window 9:56520968-56520969
2012-10-07 17:27:14,449 - DEBUG - Taking top 8 variants by coverage in window 9:56520971-56520973
2012-10-07 17:27:14,954 - DEBUG - Taking top 8 variants by coverage in window 9:56526622-56526623
2012-10-07 17:27:15,582 - DEBUG - Taking top 8 variants by coverage in window 9:56533403-56533404
2012-10-07 17:27:15,688 - DEBUG - Taking top 8 variants by coverage in window 9:56534137-56534141
2012-10-07 17:27:16,218 - DEBUG - Taking top 8 variants by coverage in window 9:56543143-56543145
2012-10-07 17:27:16,580 - DEBUG - Taking top 8 variants by coverage in window 9:56544873-56544874
2012-10-07 17:27:16,858 - DEBUG - Taking top 8 variants by coverage in window 9:56548267-56548268
2012-10-07 17:27:17,181 - DEBUG - Taking top 8 variants by coverage in window 9:56551801-56551802
2012-10-07 17:27:17,455 - DEBUG - Taking top 8 variants by coverage in window 9:56555048-56555049
2012-10-07 17:27:17,469 - DEBUG - Taking top 8 variants by coverage in window 9:56555074-56555075
2012-10-07 17:27:17,659 - DEBUG - Taking top 8 variants by coverage in window 9:56556723-56556724
2012-10-07 17:27:18,149 - DEBUG - Taking top 8 variants by coverage in window 9:56563197-56563199
2012-10-07 17:27:18,549 - DEBUG - Taking top 8 variants by coverage in window 9:56567714-56567720
2012-10-07 17:27:18,667 - DEBUG - Taking top 8 variants by coverage in window 9:56567833-56567834
2012-10-07 17:27:18,857 - DEBUG - Taking top 8 variants by coverage in window 9:56568925-56568927
2012-10-07 17:27:19,842 - DEBUG - Taking top 8 variants by coverage in window 9:56572883-56572884
2012-10-07 17:27:20,732 - DEBUG - Taking top 8 variants by coverage in window 9:56584214-56584215
2012-10-07 17:27:20,763 - DEBUG - Taking top 8 variants by coverage in window 9:56584229-56584230
2012-10-07 17:27:21,232 - DEBUG - Taking top 8 variants by coverage in window 9:56589347-56589348
2012-10-07 17:27:21,253 - DEBUG - Taking top 8 variants by coverage in window 9:56589350-56589351
2012-10-07 17:27:21,485 - DEBUG - Taking top 8 variants by coverage in window 9:56591066-56591067
2012-10-07 17:27:21,998 - DEBUG - Taking top 8 variants by coverage in window 9:56597279-56597288
2012-10-07 17:27:22,659 - DEBUG - Taking top 8 variants by coverage in window 9:56604472-56604473
2012-10-07 17:27:23,112 - DEBUG - Taking top 8 variants by coverage in window 9:56608764-56608767
2012-10-07 17:27:23,168 - DEBUG - Taking top 8 variants by coverage in window 9:56608813-56608814
2012-10-07 17:27:23,856 - DEBUG - Taking top 8 variants by coverage in window 9:56615771-56615774
2012-10-07 17:27:25,533 - DEBUG - Taking top 8 variants by coverage in window 9:56631093-56631096
2012-10-07 17:27:25,873 - DEBUG - Taking top 8 variants by coverage in window 9:56633664-56633665
2012-10-07 17:27:26,086 - DEBUG - Taking top 8 variants by coverage in window 9:56635977-56635978
2012-10-07 17:27:26,659 - DEBUG - Taking top 8 variants by coverage in window 9:56643944-56643945
2012-10-07 17:27:27,039 - DEBUG - Taking top 8 variants by coverage in window 9:56649615-56649616
2012-10-07 17:27:27,093 - DEBUG - Taking top 8 variants by coverage in window 9:56649649-56649653
2012-10-07 17:27:27,278 - DEBUG - Taking top 8 variants by coverage in window 9:56650744-56650745
2012-10-07 17:27:27,304 - DEBUG - Taking top 8 variants by coverage in window 9:56650748-56650749
2012-10-07 17:27:28,055 - DEBUG - Taking top 8 variants by coverage in window 9:56659655-56659657
2012-10-07 17:27:29,294 - DEBUG - Taking top 8 variants by coverage in window 9:56670839-56670840
2012-10-07 17:27:29,368 - DEBUG - Taking top 8 variants by coverage in window 9:56671396-56671401
2012-10-07 17:27:29,383 - DEBUG - Taking top 8 variants by coverage in window 9:56671404-56671405
2012-10-07 17:27:30,584 - DEBUG - Taking top 8 variants by coverage in window 9:56689396-56689408
2012-10-07 17:27:31,688 - DEBUG - Taking top 8 variants by coverage in window 9:56702052-56702053
2012-10-07 17:27:31,763 - DEBUG - Taking top 8 variants by coverage in window 9:56702054-56702057
2012-10-07 17:27:32,148 - DEBUG - Taking top 8 variants by coverage in window 9:56704413-56704414
2012-10-07 17:27:32,676 - DEBUG - Taking top 8 variants by coverage in window 9:56709558-56709559
2012-10-07 17:27:32,711 - DEBUG - Taking top 8 variants by coverage in window 9:56709568-56709569
2012-10-07 17:27:33,455 - DEBUG - Taking top 8 variants by coverage in window 9:56721389-56721390
2012-10-07 17:27:34,212 - DEBUG - Taking top 8 variants by coverage in window 9:56727469-56727470
2012-10-07 17:27:34,362 - DEBUG - Taking top 8 variants by coverage in window 9:56729177-56729178
2012-10-07 17:27:35,067 - DEBUG - Taking top 8 variants by coverage in window 9:56741969-56741970
2012-10-07 17:27:35,218 - DEBUG - Taking top 8 variants by coverage in window 9:56743623-56743628
2012-10-07 17:27:36,312 - DEBUG - Taking top 8 variants by coverage in window 9:56756897-56756911
2012-10-07 17:27:36,947 - DEBUG - Taking top 8 variants by coverage in window 9:56767946-56767949
2012-10-07 17:27:37,074 - DEBUG - Taking top 8 variants by coverage in window 9:56768748-56768749
2012-10-07 17:27:37,771 - DEBUG - Taking top 8 variants by coverage in window 9:56779281-56779282
2012-10-07 17:27:38,020 - DEBUG - Taking top 8 variants by coverage in window 9:56781700-56781701
2012-10-07 17:27:38,053 - DEBUG - Taking top 8 variants by coverage in window 9:56781762-56781763
2012-10-07 17:27:40,384 - DEBUG - Taking top 8 variants by coverage in window 9:56813381-56813382
2012-10-07 17:27:40,659 - DEBUG - Taking top 8 variants by coverage in window 9:56826599-56826600
2012-10-07 17:27:40,802 - DEBUG - Taking top 8 variants by coverage in window 9:56830340-56830341
2012-10-07 17:27:41,197 - DEBUG - Taking top 8 variants by coverage in window 9:56836795-56836797
2012-10-07 17:27:41,246 - DEBUG - Taking top 8 variants by coverage in window 9:56836990-56836991
2012-10-07 17:27:41,474 - DEBUG - Taking top 8 variants by coverage in window 9:56841450-56841451
2012-10-07 17:27:41,775 - DEBUG - Taking top 8 variants by coverage in window 9:56846602-56846612
2012-10-07 17:27:42,193 - DEBUG - Taking top 8 variants by coverage in window 9:56854014-56854015
2012-10-07 17:27:42,255 - DEBUG - Taking top 8 variants by coverage in window 9:56855546-56855547
2012-10-07 17:27:42,282 - DEBUG - Taking top 8 variants by coverage in window 9:56855737-56855738
2012-10-07 17:27:42,385 - DEBUG - Taking top 8 variants by coverage in window 9:56858241-56858242
2012-10-07 17:27:43,004 - DEBUG - Taking top 8 variants by coverage in window 9:56873111-56873112
2012-10-07 17:27:43,190 - DEBUG - Taking top 8 variants by coverage in window 9:56879743-56879749
2012-10-07 17:27:43,410 - DEBUG - Taking top 8 variants by coverage in window 9:56883616-56883633
2012-10-07 17:27:43,522 - DEBUG - Taking top 8 variants by coverage in window 9:56885892-56885893
2012-10-07 17:27:44,021 - DEBUG - Taking top 8 variants by coverage in window 9:56889538-56889539
2012-10-07 17:27:44,037 - DEBUG - Taking top 8 variants by coverage in window 9:56889544-56889545
2012-10-07 17:27:44,639 - DEBUG - Taking top 8 variants by coverage in window 9:56895871-56895872
2012-10-07 17:27:44,698 - DEBUG - Taking top 8 variants by coverage in window 9:56896446-56896449
2012-10-07 17:27:45,195 - DEBUG - Taking top 8 variants by coverage in window 9:56903082-56903083
2012-10-07 17:27:45,406 - DEBUG - Taking top 8 variants by coverage in window 9:56905823-56905824
2012-10-07 17:27:45,962 - DEBUG - Taking top 8 variants by coverage in window 9:56916405-56916406
2012-10-07 17:27:47,213 - DEBUG - Taking top 8 variants by coverage in window 9:56956888-56956889
2012-10-07 17:27:47,379 - DEBUG - Taking top 8 variants by coverage in window 9:56962179-56962180
2012-10-07 17:27:47,688 - DEBUG - Taking top 8 variants by coverage in window 9:56970840-56970844
2012-10-07 17:27:48,531 - DEBUG - Taking top 8 variants by coverage in window 9:56996355-56996363
2012-10-07 17:27:48,549 - DEBUG - Taking top 8 variants by coverage in window 9:56996376-56996377
2012-10-07 17:27:48,594 - DEBUG - Taking top 8 variants by coverage in window 9:56996383-56996384
2012-10-07 17:27:48,785 - DEBUG - Taking top 8 variants by coverage in window 9:56999759-56999760
2012-10-07 17:27:49,841 - DEBUG - Read 105838 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 17:27:50,108 - DEBUG - Read 115673 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 17:27:50,391 - DEBUG - Read 132718 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 17:27:50,716 - DEBUG - Read 137596 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 17:27:51,020 - DEBUG - Read 125810 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 17:27:51,287 - DEBUG - Read 119030 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 17:27:51,569 - DEBUG - Read 125532 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 17:27:51,849 - DEBUG - Read 118496 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 17:27:52,146 - DEBUG - Read 112207 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 17:27:52,401 - DEBUG - Read 106780 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 17:27:52,685 - DEBUG - Read 122494 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 17:27:52,934 - DEBUG - Read 111905 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 17:27:53,196 - DEBUG - Read 113672 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 17:27:53,461 - DEBUG - Read 124685 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 17:27:53,751 - DEBUG - Read 134744 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 17:27:53,996 - DEBUG - Read 104002 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 17:27:54,267 - DEBUG - Read 127895 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 17:27:54,546 - DEBUG - Read 120699 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 17:27:54,796 - DEBUG - Read 113025 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 17:27:55,048 - DEBUG - Read 104335 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 17:27:55,150 - DEBUG - Detected 23301 variants in 105838 reads
2012-10-07 17:27:55,320 - DEBUG - Detected 36460 variants in 115673 reads
2012-10-07 17:27:55,551 - DEBUG - Detected 47390 variants in 132718 reads
2012-10-07 17:27:55,831 - DEBUG - Detected 55311 variants in 137596 reads
2012-10-07 17:27:56,162 - DEBUG - Detected 62764 variants in 125810 reads
2012-10-07 17:27:56,496 - DEBUG - Detected 69690 variants in 119030 reads
2012-10-07 17:27:56,875 - DEBUG - Detected 83998 variants in 125532 reads
2012-10-07 17:27:57,313 - DEBUG - Detected 89754 variants in 118496 reads
2012-10-07 17:27:57,770 - DEBUG - Detected 96126 variants in 112207 reads
2012-10-07 17:27:58,247 - DEBUG - Detected 101045 variants in 106780 reads
2012-10-07 17:27:58,805 - DEBUG - Detected 106927 variants in 122494 reads
2012-10-07 17:27:59,334 - DEBUG - Detected 110938 variants in 111905 reads
2012-10-07 17:27:59,885 - DEBUG - Detected 116127 variants in 113672 reads
2012-10-07 17:28:00,472 - DEBUG - Detected 121212 variants in 124685 reads
2012-10-07 17:28:01,095 - DEBUG - Detected 129480 variants in 134744 reads
2012-10-07 17:28:01,785 - DEBUG - Detected 134692 variants in 104002 reads
2012-10-07 17:28:02,468 - DEBUG - Detected 138807 variants in 127895 reads
2012-10-07 17:28:03,163 - DEBUG - Detected 143183 variants in 120699 reads
2012-10-07 17:28:03,872 - DEBUG - Detected 147850 variants in 113025 reads
2012-10-07 17:28:04,651 - DEBUG - Detected 152902 variants in 104335 reads
2012-10-07 17:28:06,423 - DEBUG - Taking top 8 variants by coverage in window 9:57007303-57007304
2012-10-07 17:28:06,531 - DEBUG - Taking top 8 variants by coverage in window 9:57007521-57007522
2012-10-07 17:28:06,745 - DEBUG - Taking top 8 variants by coverage in window 9:57009704-57009711
2012-10-07 17:28:06,821 - DEBUG - Taking top 8 variants by coverage in window 9:57009774-57009775
2012-10-07 17:28:07,093 - DEBUG - Taking top 8 variants by coverage in window 9:57011353-57011367
2012-10-07 17:28:07,117 - DEBUG - Taking top 8 variants by coverage in window 9:57011387-57011388
2012-10-07 17:28:07,416 - DEBUG - Taking top 8 variants by coverage in window 9:57013649-57013651
2012-10-07 17:28:07,908 - DEBUG - Taking top 8 variants by coverage in window 9:57019262-57019263
2012-10-07 17:28:08,221 - DEBUG - Taking top 8 variants by coverage in window 9:57022479-57022480
2012-10-07 17:28:08,901 - DEBUG - Taking top 8 variants by coverage in window 9:57029526-57029527
2012-10-07 17:28:09,057 - DEBUG - Taking top 8 variants by coverage in window 9:57030403-57030404
2012-10-07 17:28:10,204 - DEBUG - Taking top 8 variants by coverage in window 9:57043429-57043434
2012-10-07 17:28:10,880 - DEBUG - Taking top 8 variants by coverage in window 9:57051128-57051136
2012-10-07 17:28:11,410 - DEBUG - Taking top 8 variants by coverage in window 9:57055206-57055209
2012-10-07 17:28:13,421 - DEBUG - Taking top 8 variants by coverage in window 9:57074773-57074775
2012-10-07 17:28:13,822 - DEBUG - Taking top 8 variants by coverage in window 9:57079254-57079255
2012-10-07 17:28:14,244 - DEBUG - Taking top 8 variants by coverage in window 9:57083953-57083954
2012-10-07 17:28:14,655 - DEBUG - Taking top 8 variants by coverage in window 9:57087500-57087503
2012-10-07 17:28:15,613 - DEBUG - Taking top 8 variants by coverage in window 9:57102743-57102746
2012-10-07 17:28:15,657 - DEBUG - Taking top 8 variants by coverage in window 9:57102748-57102749
2012-10-07 17:28:15,706 - DEBUG - Taking top 8 variants by coverage in window 9:57102756-57102765
2012-10-07 17:28:15,781 - DEBUG - Taking top 8 variants by coverage in window 9:57103068-57103069
2012-10-07 17:28:15,955 - DEBUG - Taking top 8 variants by coverage in window 9:57107310-57107311
2012-10-07 17:28:16,018 - DEBUG - Taking top 8 variants by coverage in window 9:57107911-57107912
2012-10-07 17:28:16,276 - DEBUG - Taking top 8 variants by coverage in window 9:57112766-57112769
2012-10-07 17:28:16,914 - DEBUG - Taking top 8 variants by coverage in window 9:57119772-57119773
2012-10-07 17:28:17,072 - DEBUG - Taking top 8 variants by coverage in window 9:57123052-57123056
2012-10-07 17:28:17,133 - DEBUG - Taking top 8 variants by coverage in window 9:57123078-57123079
2012-10-07 17:28:17,185 - DEBUG - Taking top 8 variants by coverage in window 9:57123732-57123739
2012-10-07 17:28:17,576 - DEBUG - Taking top 8 variants by coverage in window 9:57130201-57130202
2012-10-07 17:28:17,591 - DEBUG - Taking top 8 variants by coverage in window 9:57130209-57130211
2012-10-07 17:28:17,647 - DEBUG - Taking top 8 variants by coverage in window 9:57130223-57130225
2012-10-07 17:28:18,375 - DEBUG - Taking top 8 variants by coverage in window 9:57138621-57138640
2012-10-07 17:28:20,120 - DEBUG - Taking top 8 variants by coverage in window 9:57169800-57169801
2012-10-07 17:28:21,489 - DEBUG - Taking top 8 variants by coverage in window 9:57181718-57181729
2012-10-07 17:28:21,537 - DEBUG - Taking top 8 variants by coverage in window 9:57182621-57182622
2012-10-07 17:28:24,650 - DEBUG - Taking top 8 variants by coverage in window 9:57212387-57212395
2012-10-07 17:28:25,044 - DEBUG - Taking top 8 variants by coverage in window 9:57216147-57216148
2012-10-07 17:28:25,822 - DEBUG - Taking top 8 variants by coverage in window 9:57221253-57221255
2012-10-07 17:28:26,888 - DEBUG - Taking top 8 variants by coverage in window 9:57233505-57233506
2012-10-07 17:28:26,904 - DEBUG - Taking top 8 variants by coverage in window 9:57233508-57233509
2012-10-07 17:28:27,098 - DEBUG - Taking top 8 variants by coverage in window 9:57235722-57235723
2012-10-07 17:28:27,361 - DEBUG - Taking top 8 variants by coverage in window 9:57238052-57238058
2012-10-07 17:28:27,724 - DEBUG - Taking top 8 variants by coverage in window 9:57242491-57242493
2012-10-07 17:28:27,906 - DEBUG - Taking top 8 variants by coverage in window 9:57242512-57242513
2012-10-07 17:28:27,965 - DEBUG - Taking top 8 variants by coverage in window 9:57242526-57242529
2012-10-07 17:28:28,096 - DEBUG - Taking top 8 variants by coverage in window 9:57242538-57242540
2012-10-07 17:28:28,155 - DEBUG - Taking top 8 variants by coverage in window 9:57242541-57242542
2012-10-07 17:28:28,381 - DEBUG - Taking top 8 variants by coverage in window 9:57242638-57242642
2012-10-07 17:28:29,412 - DEBUG - Taking top 8 variants by coverage in window 9:57252640-57252646
2012-10-07 17:28:29,867 - DEBUG - Taking top 8 variants by coverage in window 9:57253017-57253022
2012-10-07 17:28:30,181 - DEBUG - Taking top 8 variants by coverage in window 9:57257274-57257275
2012-10-07 17:28:30,357 - DEBUG - Taking top 8 variants by coverage in window 9:57257930-57257931
2012-10-07 17:28:30,377 - DEBUG - Taking top 8 variants by coverage in window 9:57257980-57257981
2012-10-07 17:28:30,800 - DEBUG - Taking top 8 variants by coverage in window 9:57261070-57261071
2012-10-07 17:28:30,999 - DEBUG - Taking top 8 variants by coverage in window 9:57263976-57263977
2012-10-07 17:28:31,975 - DEBUG - Taking top 8 variants by coverage in window 9:57276094-57276111
2012-10-07 17:28:32,015 - DEBUG - Taking top 8 variants by coverage in window 9:57276129-57276130
2012-10-07 17:28:32,576 - DEBUG - Taking top 8 variants by coverage in window 9:57283320-57283322
2012-10-07 17:28:32,979 - DEBUG - Taking top 8 variants by coverage in window 9:57288118-57288122
2012-10-07 17:28:33,759 - DEBUG - Taking top 8 variants by coverage in window 9:57294777-57294778
2012-10-07 17:28:33,795 - DEBUG - Taking top 8 variants by coverage in window 9:57294800-57294801
2012-10-07 17:28:33,810 - DEBUG - Taking top 8 variants by coverage in window 9:57294801-57294804
2012-10-07 17:28:33,993 - DEBUG - Taking top 8 variants by coverage in window 9:57296577-57296580
2012-10-07 17:28:34,027 - DEBUG - Taking top 8 variants by coverage in window 9:57296768-57296769
2012-10-07 17:28:34,862 - DEBUG - Taking top 8 variants by coverage in window 9:57302954-57302955
2012-10-07 17:28:36,368 - DEBUG - Taking top 8 variants by coverage in window 9:57317998-57317999
2012-10-07 17:28:36,429 - DEBUG - Taking top 8 variants by coverage in window 9:57318913-57318916
2012-10-07 17:28:36,621 - DEBUG - Taking top 8 variants by coverage in window 9:57319852-57319853
2012-10-07 17:28:38,374 - DEBUG - Taking top 8 variants by coverage in window 9:57331718-57331719
2012-10-07 17:28:38,454 - DEBUG - Taking top 8 variants by coverage in window 9:57332425-57332426
2012-10-07 17:28:38,684 - DEBUG - Taking top 8 variants by coverage in window 9:57333581-57333582
2012-10-07 17:28:38,695 - DEBUG - Taking top 8 variants by coverage in window 9:57333582-57333583
2012-10-07 17:28:38,909 - DEBUG - Taking top 8 variants by coverage in window 9:57335081-57335082
2012-10-07 17:28:39,016 - DEBUG - Taking top 8 variants by coverage in window 9:57335444-57335448
2012-10-07 17:28:39,823 - DEBUG - Taking top 8 variants by coverage in window 9:57338133-57338147
2012-10-07 17:28:40,031 - DEBUG - Taking top 8 variants by coverage in window 9:57339650-57339656
2012-10-07 17:28:40,194 - DEBUG - Taking top 8 variants by coverage in window 9:57339669-57339670
2012-10-07 17:28:40,654 - DEBUG - Taking top 8 variants by coverage in window 9:57344140-57344141
2012-10-07 17:28:41,655 - DEBUG - Taking top 8 variants by coverage in window 9:57354994-57354995
2012-10-07 17:28:42,587 - DEBUG - Taking top 8 variants by coverage in window 9:57365446-57365448
2012-10-07 17:28:43,092 - DEBUG - Taking top 8 variants by coverage in window 9:57375769-57375781
2012-10-07 17:28:43,121 - DEBUG - Taking top 8 variants by coverage in window 9:57375795-57375796
2012-10-07 17:28:44,008 - DEBUG - Taking top 8 variants by coverage in window 9:57391702-57391703
2012-10-07 17:28:44,523 - DEBUG - Taking top 8 variants by coverage in window 9:57399645-57399646
2012-10-07 17:28:44,846 - DEBUG - Taking top 8 variants by coverage in window 9:57404618-57404619
2012-10-07 17:28:44,958 - DEBUG - Taking top 8 variants by coverage in window 9:57406070-57406071
2012-10-07 17:28:45,363 - DEBUG - Taking top 8 variants by coverage in window 9:57412049-57412057
2012-10-07 17:28:45,383 - DEBUG - Taking top 8 variants by coverage in window 9:57412059-57412060
2012-10-07 17:28:45,499 - DEBUG - Taking top 8 variants by coverage in window 9:57413903-57413904
2012-10-07 17:28:46,079 - DEBUG - Taking top 8 variants by coverage in window 9:57420418-57420421
2012-10-07 17:28:46,105 - DEBUG - Taking top 8 variants by coverage in window 9:57420428-57420429
2012-10-07 17:28:46,159 - DEBUG - Taking top 8 variants by coverage in window 9:57420764-57420767
2012-10-07 17:28:46,178 - DEBUG - Taking top 8 variants by coverage in window 9:57420943-57420944
2012-10-07 17:28:46,199 - DEBUG - Taking top 8 variants by coverage in window 9:57420961-57420962
2012-10-07 17:28:46,363 - DEBUG - Taking top 8 variants by coverage in window 9:57422387-57422388
2012-10-07 17:28:47,057 - DEBUG - Taking top 8 variants by coverage in window 9:57430471-57430472
2012-10-07 17:28:47,198 - DEBUG - Taking top 8 variants by coverage in window 9:57431064-57431065
2012-10-07 17:28:47,217 - DEBUG - Taking top 8 variants by coverage in window 9:57431066-57431067
2012-10-07 17:28:48,569 - DEBUG - Taking top 8 variants by coverage in window 9:57451558-57451559
2012-10-07 17:28:48,611 - DEBUG - Taking top 8 variants by coverage in window 9:57451893-57451894
2012-10-07 17:28:49,205 - DEBUG - Taking top 8 variants by coverage in window 9:57459283-57459293
2012-10-07 17:28:49,364 - DEBUG - Taking top 8 variants by coverage in window 9:57460513-57460515
2012-10-07 17:28:50,203 - DEBUG - Taking top 8 variants by coverage in window 9:57468879-57468882
2012-10-07 17:28:50,510 - DEBUG - Taking top 8 variants by coverage in window 9:57471530-57471531
2012-10-07 17:28:50,970 - DEBUG - Taking top 8 variants by coverage in window 9:57480829-57480830
2012-10-07 17:28:51,504 - DEBUG - Taking top 8 variants by coverage in window 9:57487920-57487921
2012-10-07 17:28:51,950 - DEBUG - Taking top 8 variants by coverage in window 9:57495624-57495625
2012-10-07 17:28:51,999 - DEBUG - Taking top 8 variants by coverage in window 9:57496779-57496781
2012-10-07 17:28:52,439 - DEBUG - Taking top 8 variants by coverage in window 9:57500833-57500834
2012-10-07 17:28:52,558 - DEBUG - Taking top 8 variants by coverage in window 9:57502142-57502147
2012-10-07 17:28:52,916 - DEBUG - Taking top 8 variants by coverage in window 9:57505977-57505978
2012-10-07 17:28:52,931 - DEBUG - Taking top 8 variants by coverage in window 9:57505989-57505990
2012-10-07 17:28:53,452 - DEBUG - Taking top 8 variants by coverage in window 9:57512713-57512714
2012-10-07 17:28:54,134 - DEBUG - Taking top 8 variants by coverage in window 9:57520409-57520410
2012-10-07 17:28:55,008 - DEBUG - Taking top 8 variants by coverage in window 9:57532403-57532407
2012-10-07 17:28:55,056 - DEBUG - Taking top 8 variants by coverage in window 9:57532411-57532415
2012-10-07 17:28:55,491 - DEBUG - Taking top 8 variants by coverage in window 9:57537196-57537197
2012-10-07 17:28:56,202 - DEBUG - Taking top 8 variants by coverage in window 9:57543765-57543766
2012-10-07 17:28:56,533 - DEBUG - Taking top 8 variants by coverage in window 9:57549008-57549010
2012-10-07 17:28:56,857 - DEBUG - Taking top 8 variants by coverage in window 9:57555406-57555408
2012-10-07 17:28:56,866 - DEBUG - Taking top 8 variants by coverage in window 9:57555563-57555564
2012-10-07 17:28:57,063 - DEBUG - Taking top 8 variants by coverage in window 9:57558570-57558571
2012-10-07 17:28:57,214 - DEBUG - Taking top 8 variants by coverage in window 9:57562760-57562771
2012-10-07 17:28:57,542 - DEBUG - Taking top 8 variants by coverage in window 9:57570981-57570982
2012-10-07 17:28:57,682 - DEBUG - Taking top 8 variants by coverage in window 9:57572633-57572634
2012-10-07 17:28:57,870 - DEBUG - Taking top 8 variants by coverage in window 9:57575316-57575317
2012-10-07 17:28:58,839 - DEBUG - Taking top 8 variants by coverage in window 9:57592654-57592655
2012-10-07 17:28:58,938 - DEBUG - Taking top 8 variants by coverage in window 9:57593035-57593037
2012-10-07 17:28:59,746 - DEBUG - Taking top 8 variants by coverage in window 9:57616533-57616534
2012-10-07 17:29:01,221 - DEBUG - Taking top 8 variants by coverage in window 9:57635921-57635922
2012-10-07 17:29:01,358 - DEBUG - Taking top 8 variants by coverage in window 9:57636043-57636050
2012-10-07 17:29:01,491 - DEBUG - Taking top 8 variants by coverage in window 9:57636051-57636057
2012-10-07 17:29:01,618 - DEBUG - Taking top 8 variants by coverage in window 9:57636095-57636101
2012-10-07 17:29:01,671 - DEBUG - Taking top 8 variants by coverage in window 9:57636115-57636121
2012-10-07 17:29:05,164 - DEBUG - Taking top 8 variants by coverage in window 9:57665823-57665826
2012-10-07 17:29:05,463 - DEBUG - Taking top 8 variants by coverage in window 9:57671380-57671381
2012-10-07 17:29:05,692 - DEBUG - Taking top 8 variants by coverage in window 9:57674183-57674184
2012-10-07 17:29:05,928 - DEBUG - Taking top 8 variants by coverage in window 9:57677263-57677264
2012-10-07 17:29:06,376 - DEBUG - Taking top 8 variants by coverage in window 9:57689204-57689205
2012-10-07 17:29:06,399 - DEBUG - Taking top 8 variants by coverage in window 9:57689621-57689622
2012-10-07 17:29:06,463 - DEBUG - Taking top 8 variants by coverage in window 9:57690193-57690194
2012-10-07 17:29:06,494 - DEBUG - Taking top 8 variants by coverage in window 9:57690281-57690282
2012-10-07 17:29:07,261 - DEBUG - Taking top 8 variants by coverage in window 9:57698422-57698423
2012-10-07 17:29:07,298 - DEBUG - Taking top 8 variants by coverage in window 9:57698424-57698425
2012-10-07 17:29:07,378 - DEBUG - Taking top 8 variants by coverage in window 9:57698434-57698435
2012-10-07 17:29:07,434 - DEBUG - Taking top 8 variants by coverage in window 9:57698438-57698445
2012-10-07 17:29:07,758 - DEBUG - Taking top 8 variants by coverage in window 9:57698447-57698454
2012-10-07 17:29:08,004 - DEBUG - Taking top 8 variants by coverage in window 9:57698529-57698530
2012-10-07 17:29:08,343 - DEBUG - Taking top 8 variants by coverage in window 9:57702834-57702844
2012-10-07 17:29:08,548 - DEBUG - Taking top 8 variants by coverage in window 9:57704082-57704083
2012-10-07 17:29:09,068 - DEBUG - Taking top 8 variants by coverage in window 9:57709066-57709068
2012-10-07 17:29:09,091 - DEBUG - Taking top 8 variants by coverage in window 9:57709286-57709287
2012-10-07 17:29:09,486 - DEBUG - Taking top 8 variants by coverage in window 9:57713383-57713384
2012-10-07 17:29:09,947 - DEBUG - Taking top 8 variants by coverage in window 9:57719134-57719135
2012-10-07 17:29:10,237 - DEBUG - Taking top 8 variants by coverage in window 9:57720755-57720756
2012-10-07 17:29:10,434 - DEBUG - Taking top 8 variants by coverage in window 9:57721251-57721252
2012-10-07 17:29:10,725 - DEBUG - Taking top 8 variants by coverage in window 9:57724554-57724555
2012-10-07 17:29:10,865 - DEBUG - Taking top 8 variants by coverage in window 9:57725588-57725593
2012-10-07 17:29:10,891 - DEBUG - Taking top 8 variants by coverage in window 9:57725770-57725771
2012-10-07 17:29:10,949 - DEBUG - Taking top 8 variants by coverage in window 9:57726063-57726064
2012-10-07 17:29:11,433 - DEBUG - Taking top 8 variants by coverage in window 9:57729455-57729457
2012-10-07 17:29:11,608 - DEBUG - Taking top 8 variants by coverage in window 9:57731222-57731224
2012-10-07 17:29:11,986 - DEBUG - Taking top 8 variants by coverage in window 9:57733310-57733311
2012-10-07 17:29:12,752 - DEBUG - Taking top 8 variants by coverage in window 9:57740395-57740398
2012-10-07 17:29:13,429 - DEBUG - Taking top 8 variants by coverage in window 9:57747160-57747161
2012-10-07 17:29:13,442 - DEBUG - Taking top 8 variants by coverage in window 9:57747166-57747167
2012-10-07 17:29:13,627 - DEBUG - Taking top 8 variants by coverage in window 9:57749313-57749314
2012-10-07 17:29:13,641 - DEBUG - Taking top 8 variants by coverage in window 9:57749314-57749315
2012-10-07 17:29:13,818 - DEBUG - Taking top 8 variants by coverage in window 9:57750843-57750844
2012-10-07 17:29:14,726 - DEBUG - Taking top 8 variants by coverage in window 9:57764654-57764664
2012-10-07 17:29:14,984 - DEBUG - Taking top 8 variants by coverage in window 9:57766949-57766950
2012-10-07 17:29:15,082 - DEBUG - Taking top 8 variants by coverage in window 9:57767998-57768001
2012-10-07 17:29:15,459 - DEBUG - Taking top 8 variants by coverage in window 9:57770722-57770724
2012-10-07 17:29:15,790 - DEBUG - Taking top 8 variants by coverage in window 9:57773480-57773484
2012-10-07 17:29:16,902 - DEBUG - Taking top 8 variants by coverage in window 9:57776891-57776892
2012-10-07 17:29:18,185 - DEBUG - Taking top 8 variants by coverage in window 9:57796704-57796706
2012-10-07 17:29:18,883 - DEBUG - Taking top 8 variants by coverage in window 9:57809517-57809525
2012-10-07 17:29:19,706 - DEBUG - Taking top 8 variants by coverage in window 9:57821788-57821789
2012-10-07 17:29:21,254 - DEBUG - Taking top 8 variants by coverage in window 9:57841498-57841499
2012-10-07 17:29:21,341 - DEBUG - Taking top 8 variants by coverage in window 9:57842916-57842917
2012-10-07 17:29:22,060 - DEBUG - Taking top 8 variants by coverage in window 9:57850150-57850151
2012-10-07 17:29:22,448 - DEBUG - Taking top 8 variants by coverage in window 9:57854289-57854290
2012-10-07 17:29:22,578 - DEBUG - Taking top 8 variants by coverage in window 9:57855453-57855458
2012-10-07 17:29:22,669 - DEBUG - Taking top 8 variants by coverage in window 9:57855651-57855652
2012-10-07 17:29:23,917 - DEBUG - Taking top 8 variants by coverage in window 9:57872390-57872391
2012-10-07 17:29:24,053 - DEBUG - Taking top 8 variants by coverage in window 9:57872690-57872691
2012-10-07 17:29:24,066 - DEBUG - Taking top 8 variants by coverage in window 9:57872691-57872693
2012-10-07 17:29:24,616 - DEBUG - Taking top 8 variants by coverage in window 9:57880583-57880584
2012-10-07 17:29:25,269 - DEBUG - Taking top 8 variants by coverage in window 9:57885829-57885830
2012-10-07 17:29:25,491 - DEBUG - Taking top 8 variants by coverage in window 9:57887763-57887764
2012-10-07 17:29:26,575 - DEBUG - Taking top 8 variants by coverage in window 9:57900383-57900384
2012-10-07 17:29:26,654 - DEBUG - Taking top 8 variants by coverage in window 9:57900412-57900413
2012-10-07 17:29:26,680 - DEBUG - Taking top 8 variants by coverage in window 9:57900415-57900416
2012-10-07 17:29:26,872 - DEBUG - Taking top 8 variants by coverage in window 9:57900954-57900957
2012-10-07 17:29:27,045 - DEBUG - Taking top 8 variants by coverage in window 9:57902357-57902358
2012-10-07 17:29:27,509 - DEBUG - Taking top 8 variants by coverage in window 9:57910431-57910444
2012-10-07 17:29:27,794 - DEBUG - Taking top 8 variants by coverage in window 9:57913799-57913800
2012-10-07 17:29:28,048 - DEBUG - Taking top 8 variants by coverage in window 9:57917191-57917192
2012-10-07 17:29:30,177 - DEBUG - Taking top 8 variants by coverage in window 9:57943569-57943570
2012-10-07 17:29:30,586 - DEBUG - Taking top 8 variants by coverage in window 9:57948856-57948857
2012-10-07 17:29:30,594 - DEBUG - Taking top 8 variants by coverage in window 9:57948859-57948863
2012-10-07 17:29:30,867 - DEBUG - Taking top 8 variants by coverage in window 9:57951773-57951774
2012-10-07 17:29:31,931 - DEBUG - Taking top 8 variants by coverage in window 9:57969688-57969689
2012-10-07 17:29:31,940 - DEBUG - Taking top 8 variants by coverage in window 9:57969708-57969709
2012-10-07 17:29:31,957 - DEBUG - Taking top 8 variants by coverage in window 9:57969913-57969915
2012-10-07 17:29:32,053 - DEBUG - Taking top 8 variants by coverage in window 9:57971291-57971298
2012-10-07 17:29:32,233 - DEBUG - Taking top 8 variants by coverage in window 9:57972941-57972942
2012-10-07 17:29:32,275 - DEBUG - Taking top 8 variants by coverage in window 9:57973370-57973372
2012-10-07 17:29:32,331 - DEBUG - Taking top 8 variants by coverage in window 9:57973413-57973414
2012-10-07 17:29:32,368 - DEBUG - Taking top 8 variants by coverage in window 9:57973949-57973953
2012-10-07 17:29:32,522 - DEBUG - Taking top 8 variants by coverage in window 9:57975894-57975895
2012-10-07 17:29:32,562 - DEBUG - Taking top 8 variants by coverage in window 9:57976084-57976085
2012-10-07 17:29:33,285 - DEBUG - Taking top 8 variants by coverage in window 9:57990942-57990943
2012-10-07 17:29:33,331 - DEBUG - Taking top 8 variants by coverage in window 9:57990957-57990976
2012-10-07 17:29:33,603 - DEBUG - Taking top 8 variants by coverage in window 9:57994677-57994678
2012-10-07 17:29:34,048 - DEBUG - Taking top 8 variants by coverage in window 9:57999911-57999912
2012-10-07 17:29:34,090 - DEBUG - Taking top 8 variants by coverage in window 9:57999913-57999914
2012-10-07 17:29:35,167 - DEBUG - Read 99944 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 17:29:35,425 - DEBUG - Read 108937 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 17:29:35,692 - DEBUG - Read 125288 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 17:29:35,998 - DEBUG - Read 128294 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 17:29:36,285 - DEBUG - Read 118854 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 17:29:36,539 - DEBUG - Read 114291 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 17:29:36,864 - DEBUG - Read 119816 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 17:29:37,127 - DEBUG - Read 109945 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 17:29:37,371 - DEBUG - Read 105291 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 17:29:37,618 - DEBUG - Read 103008 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 17:29:37,885 - DEBUG - Read 115964 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 17:29:38,122 - DEBUG - Read 105659 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 17:29:38,377 - DEBUG - Read 107814 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 17:29:38,628 - DEBUG - Read 118296 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 17:29:38,905 - DEBUG - Read 127607 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 17:29:39,137 - DEBUG - Read 97490 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 17:29:39,396 - DEBUG - Read 122552 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 17:29:39,747 - DEBUG - Read 115597 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 17:29:39,980 - DEBUG - Read 104422 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 17:29:40,221 - DEBUG - Read 100339 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 17:29:40,319 - DEBUG - Detected 20209 variants in 99944 reads
2012-10-07 17:29:40,476 - DEBUG - Detected 30594 variants in 108937 reads
2012-10-07 17:29:40,699 - DEBUG - Detected 40091 variants in 125288 reads
2012-10-07 17:29:40,948 - DEBUG - Detected 48725 variants in 128294 reads
2012-10-07 17:29:41,224 - DEBUG - Detected 54782 variants in 118854 reads
2012-10-07 17:29:41,527 - DEBUG - Detected 60501 variants in 114291 reads
2012-10-07 17:29:41,864 - DEBUG - Detected 73450 variants in 119816 reads
2012-10-07 17:29:42,256 - DEBUG - Detected 78939 variants in 109945 reads
2012-10-07 17:29:42,667 - DEBUG - Detected 84255 variants in 105291 reads
2012-10-07 17:29:43,139 - DEBUG - Detected 90829 variants in 103008 reads
2012-10-07 17:29:43,609 - DEBUG - Detected 95403 variants in 115964 reads
2012-10-07 17:29:44,090 - DEBUG - Detected 99026 variants in 105659 reads
2012-10-07 17:29:44,583 - DEBUG - Detected 103207 variants in 107814 reads
2012-10-07 17:29:45,113 - DEBUG - Detected 107532 variants in 118296 reads
2012-10-07 17:29:45,721 - DEBUG - Detected 114834 variants in 127607 reads
2012-10-07 17:29:46,286 - DEBUG - Detected 118725 variants in 97490 reads
2012-10-07 17:29:46,890 - DEBUG - Detected 122219 variants in 122552 reads
2012-10-07 17:29:47,496 - DEBUG - Detected 126171 variants in 115597 reads
2012-10-07 17:29:48,119 - DEBUG - Detected 130206 variants in 104422 reads
2012-10-07 17:29:48,817 - DEBUG - Detected 134589 variants in 100339 reads
2012-10-07 17:29:50,330 - DEBUG - Taking top 8 variants by coverage in window 9:58010014-58010021
2012-10-07 17:29:50,418 - DEBUG - Taking top 8 variants by coverage in window 9:58010841-58010842
2012-10-07 17:29:50,441 - DEBUG - Taking top 8 variants by coverage in window 9:58010861-58010862
2012-10-07 17:29:50,973 - DEBUG - Taking top 8 variants by coverage in window 9:58015623-58015624
2012-10-07 17:29:51,133 - DEBUG - Taking top 8 variants by coverage in window 9:58017691-58017693
2012-10-07 17:29:51,341 - DEBUG - Taking top 8 variants by coverage in window 9:58022148-58022149
2012-10-07 17:29:51,446 - DEBUG - Taking top 8 variants by coverage in window 9:58024358-58024359
2012-10-07 17:29:51,636 - DEBUG - Taking top 8 variants by coverage in window 9:58028820-58028822
2012-10-07 17:29:52,057 - DEBUG - Taking top 8 variants by coverage in window 9:58035037-58035039
2012-10-07 17:29:52,382 - DEBUG - Taking top 8 variants by coverage in window 9:58035395-58035396
2012-10-07 17:29:52,399 - DEBUG - Taking top 8 variants by coverage in window 9:58035404-58035405
2012-10-07 17:29:52,438 - DEBUG - Taking top 8 variants by coverage in window 9:58035418-58035423
2012-10-07 17:29:52,727 - DEBUG - Taking top 8 variants by coverage in window 9:58041728-58041729
2012-10-07 17:29:53,029 - DEBUG - Taking top 8 variants by coverage in window 9:58043445-58043446
2012-10-07 17:29:53,268 - DEBUG - Taking top 8 variants by coverage in window 9:58049561-58049562
2012-10-07 17:29:53,554 - DEBUG - Taking top 8 variants by coverage in window 9:58056671-58056681
2012-10-07 17:29:53,675 - DEBUG - Taking top 8 variants by coverage in window 9:58059003-58059004
2012-10-07 17:29:53,837 - DEBUG - Taking top 8 variants by coverage in window 9:58062588-58062589
2012-10-07 17:29:54,976 - DEBUG - Taking top 8 variants by coverage in window 9:58076470-58076471
2012-10-07 17:29:55,625 - DEBUG - Taking top 8 variants by coverage in window 9:58085987-58085988
2012-10-07 17:29:56,496 - DEBUG - Taking top 8 variants by coverage in window 9:58094012-58094013
2012-10-07 17:29:56,764 - DEBUG - Taking top 8 variants by coverage in window 9:58098159-58098160
2012-10-07 17:29:57,559 - DEBUG - Taking top 8 variants by coverage in window 9:58109398-58109401
2012-10-07 17:29:57,591 - DEBUG - Taking top 8 variants by coverage in window 9:58109403-58109404
2012-10-07 17:29:57,630 - DEBUG - Taking top 8 variants by coverage in window 9:58109407-58109417
2012-10-07 17:29:57,709 - DEBUG - Taking top 8 variants by coverage in window 9:58111020-58111021
2012-10-07 17:29:57,893 - DEBUG - Taking top 8 variants by coverage in window 9:58114018-58114019
2012-10-07 17:29:58,103 - DEBUG - Taking top 8 variants by coverage in window 9:58116687-58116688
2012-10-07 17:29:58,184 - DEBUG - Taking top 8 variants by coverage in window 9:58118250-58118251
2012-10-07 17:29:58,359 - DEBUG - Taking top 8 variants by coverage in window 9:58120347-58120348
2012-10-07 17:29:58,413 - DEBUG - Taking top 8 variants by coverage in window 9:58120555-58120556
2012-10-07 17:29:59,352 - DEBUG - Taking top 8 variants by coverage in window 9:58131941-58131945
2012-10-07 17:30:00,314 - DEBUG - Taking top 8 variants by coverage in window 9:58143541-58143545
2012-10-07 17:30:01,670 - DEBUG - Taking top 8 variants by coverage in window 9:58164220-58164228
2012-10-07 17:30:01,702 - DEBUG - Taking top 8 variants by coverage in window 9:58164236-58164237
2012-10-07 17:30:01,721 - DEBUG - Taking top 8 variants by coverage in window 9:58164237-58164238
2012-10-07 17:30:01,944 - DEBUG - Taking top 8 variants by coverage in window 9:58166766-58166767
2012-10-07 17:30:01,997 - DEBUG - Taking top 8 variants by coverage in window 9:58166768-58166769
2012-10-07 17:30:02,071 - DEBUG - Taking top 8 variants by coverage in window 9:58166819-58166820
2012-10-07 17:30:02,093 - DEBUG - Taking top 8 variants by coverage in window 9:58166822-58166823
2012-10-07 17:30:02,142 - DEBUG - Taking top 8 variants by coverage in window 9:58166828-58166829
2012-10-07 17:30:02,303 - DEBUG - Taking top 8 variants by coverage in window 9:58167183-58167193
2012-10-07 17:30:02,978 - DEBUG - Taking top 8 variants by coverage in window 9:58173847-58173848
2012-10-07 17:30:03,136 - DEBUG - Taking top 8 variants by coverage in window 9:58176054-58176055
2012-10-07 17:30:03,565 - DEBUG - Taking top 8 variants by coverage in window 9:58179394-58179396
2012-10-07 17:30:03,672 - DEBUG - Taking top 8 variants by coverage in window 9:58179509-58179512
2012-10-07 17:30:03,803 - DEBUG - Taking top 8 variants by coverage in window 9:58180210-58180211
2012-10-07 17:30:03,836 - DEBUG - Taking top 8 variants by coverage in window 9:58180653-58180654
2012-10-07 17:30:04,474 - DEBUG - Taking top 8 variants by coverage in window 9:58188362-58188363
2012-10-07 17:30:04,760 - DEBUG - Taking top 8 variants by coverage in window 9:58192258-58192259
2012-10-07 17:30:04,924 - DEBUG - Taking top 8 variants by coverage in window 9:58196098-58196099
2012-10-07 17:30:05,323 - DEBUG - Taking top 8 variants by coverage in window 9:58196333-58196334
2012-10-07 17:30:05,504 - DEBUG - Taking top 8 variants by coverage in window 9:58196353-58196357
2012-10-07 17:30:05,621 - DEBUG - Taking top 8 variants by coverage in window 9:58196364-58196367
2012-10-07 17:30:06,198 - DEBUG - Taking top 8 variants by coverage in window 9:58198621-58198622
2012-10-07 17:30:06,547 - DEBUG - Taking top 8 variants by coverage in window 9:58202596-58202597
2012-10-07 17:30:07,032 - DEBUG - Taking top 8 variants by coverage in window 9:58216667-58216668
2012-10-07 17:30:07,098 - DEBUG - Taking top 8 variants by coverage in window 9:58218641-58218642
2012-10-07 17:30:07,575 - DEBUG - Taking top 8 variants by coverage in window 9:58224761-58224767
2012-10-07 17:30:08,267 - DEBUG - Taking top 8 variants by coverage in window 9:58224899-58224905
2012-10-07 17:30:08,986 - DEBUG - Taking top 8 variants by coverage in window 9:58225119-58225120
2012-10-07 17:30:09,929 - DEBUG - Taking top 8 variants by coverage in window 9:58231939-58231940
2012-10-07 17:30:09,974 - DEBUG - Taking top 8 variants by coverage in window 9:58231983-58231984
2012-10-07 17:30:10,044 - DEBUG - Taking top 8 variants by coverage in window 9:58232890-58232892
2012-10-07 17:30:10,524 - DEBUG - Taking top 8 variants by coverage in window 9:58236760-58236761
2012-10-07 17:30:10,538 - DEBUG - Taking top 8 variants by coverage in window 9:58236776-58236777
2012-10-07 17:30:10,556 - DEBUG - Taking top 8 variants by coverage in window 9:58236777-58236778
2012-10-07 17:30:10,590 - DEBUG - Taking top 8 variants by coverage in window 9:58236814-58236815
2012-10-07 17:30:10,758 - DEBUG - Taking top 8 variants by coverage in window 9:58238841-58238854
2012-10-07 17:30:11,804 - DEBUG - Taking top 8 variants by coverage in window 9:58256551-58256560
2012-10-07 17:30:11,988 - DEBUG - Taking top 8 variants by coverage in window 9:58260160-58260161
2012-10-07 17:30:12,001 - DEBUG - Taking top 8 variants by coverage in window 9:58260161-58260162
2012-10-07 17:30:12,291 - DEBUG - Taking top 8 variants by coverage in window 9:58263138-58263140
2012-10-07 17:30:12,384 - DEBUG - Taking top 8 variants by coverage in window 9:58263179-58263180
2012-10-07 17:30:12,753 - DEBUG - Taking top 8 variants by coverage in window 9:58267380-58267381
2012-10-07 17:30:12,904 - DEBUG - Taking top 8 variants by coverage in window 9:58268546-58268548
2012-10-07 17:30:13,314 - DEBUG - Taking top 8 variants by coverage in window 9:58272781-58272782
2012-10-07 17:30:14,088 - DEBUG - Taking top 8 variants by coverage in window 9:58282947-58282948
2012-10-07 17:30:14,664 - DEBUG - Taking top 8 variants by coverage in window 9:58302246-58302256
2012-10-07 17:30:15,233 - DEBUG - Taking top 8 variants by coverage in window 9:58314052-58314053
2012-10-07 17:30:15,377 - DEBUG - Taking top 8 variants by coverage in window 9:58317258-58317259
2012-10-07 17:30:15,409 - DEBUG - Taking top 8 variants by coverage in window 9:58317284-58317286
2012-10-07 17:30:15,687 - DEBUG - Taking top 8 variants by coverage in window 9:58325144-58325146
2012-10-07 17:30:15,785 - DEBUG - Taking top 8 variants by coverage in window 9:58326118-58326119
2012-10-07 17:30:15,941 - DEBUG - Taking top 8 variants by coverage in window 9:58327544-58327560
2012-10-07 17:30:15,984 - DEBUG - Taking top 8 variants by coverage in window 9:58327561-58327565
2012-10-07 17:30:16,038 - DEBUG - Taking top 8 variants by coverage in window 9:58327566-58327567
2012-10-07 17:30:16,235 - DEBUG - Taking top 8 variants by coverage in window 9:58328931-58328941
2012-10-07 17:30:16,439 - DEBUG - Taking top 8 variants by coverage in window 9:58329544-58329545
2012-10-07 17:30:17,452 - DEBUG - Taking top 8 variants by coverage in window 9:58354176-58354177
2012-10-07 17:30:18,537 - DEBUG - Taking top 8 variants by coverage in window 9:58367838-58367839
2012-10-07 17:30:18,558 - DEBUG - Taking top 8 variants by coverage in window 9:58367842-58367843
2012-10-07 17:30:18,568 - DEBUG - Taking top 8 variants by coverage in window 9:58367850-58367851
2012-10-07 17:30:19,034 - DEBUG - Taking top 8 variants by coverage in window 9:58373559-58373560
2012-10-07 17:30:19,078 - DEBUG - Taking top 8 variants by coverage in window 9:58373604-58373606
2012-10-07 17:30:19,302 - DEBUG - Taking top 8 variants by coverage in window 9:58376721-58376722
2012-10-07 17:30:20,302 - DEBUG - Taking top 8 variants by coverage in window 9:58391453-58391454
2012-10-07 17:30:20,464 - DEBUG - Taking top 8 variants by coverage in window 9:58394038-58394039
2012-10-07 17:30:20,558 - DEBUG - Taking top 8 variants by coverage in window 9:58394807-58394808
2012-10-07 17:30:20,620 - DEBUG - Taking top 8 variants by coverage in window 9:58395545-58395546
2012-10-07 17:30:21,395 - DEBUG - Taking top 8 variants by coverage in window 9:58407051-58407052
2012-10-07 17:30:21,439 - DEBUG - Taking top 8 variants by coverage in window 9:58407434-58407435
2012-10-07 17:30:21,496 - DEBUG - Taking top 8 variants by coverage in window 9:58407452-58407453
2012-10-07 17:30:21,675 - DEBUG - Taking top 8 variants by coverage in window 9:58408996-58409002
2012-10-07 17:30:22,922 - DEBUG - Taking top 8 variants by coverage in window 9:58423749-58423752
2012-10-07 17:30:23,030 - DEBUG - Taking top 8 variants by coverage in window 9:58423878-58423879
2012-10-07 17:30:23,047 - DEBUG - Taking top 8 variants by coverage in window 9:58423901-58423902
2012-10-07 17:30:23,148 - DEBUG - Taking top 8 variants by coverage in window 9:58425053-58425055
2012-10-07 17:30:23,415 - DEBUG - Taking top 8 variants by coverage in window 9:58428088-58428090
2012-10-07 17:30:23,523 - DEBUG - Taking top 8 variants by coverage in window 9:58428997-58429000
2012-10-07 17:30:23,642 - DEBUG - Taking top 8 variants by coverage in window 9:58432977-58432978
2012-10-07 17:30:23,713 - DEBUG - Taking top 8 variants by coverage in window 9:58434208-58434220
2012-10-07 17:30:24,275 - DEBUG - Taking top 8 variants by coverage in window 9:58448037-58448038
2012-10-07 17:30:24,544 - DEBUG - Taking top 8 variants by coverage in window 9:58454147-58454148
2012-10-07 17:30:25,118 - DEBUG - Taking top 8 variants by coverage in window 9:58471949-58471952
2012-10-07 17:30:25,261 - DEBUG - Taking top 8 variants by coverage in window 9:58474525-58474526
2012-10-07 17:30:25,280 - DEBUG - Taking top 8 variants by coverage in window 9:58474533-58474534
2012-10-07 17:30:25,317 - DEBUG - Taking top 8 variants by coverage in window 9:58474549-58474550
2012-10-07 17:30:25,467 - DEBUG - Taking top 8 variants by coverage in window 9:58476085-58476087
2012-10-07 17:30:25,491 - DEBUG - Taking top 8 variants by coverage in window 9:58476270-58476279
2012-10-07 17:30:26,584 - DEBUG - Taking top 8 variants by coverage in window 9:58503382-58503384
2012-10-07 17:30:26,893 - DEBUG - Taking top 8 variants by coverage in window 9:58507032-58507033
2012-10-07 17:30:27,198 - DEBUG - Taking top 8 variants by coverage in window 9:58510918-58510919
2012-10-07 17:30:28,305 - DEBUG - Taking top 8 variants by coverage in window 9:58530526-58530532
2012-10-07 17:30:28,634 - DEBUG - Taking top 8 variants by coverage in window 9:58534817-58534818
2012-10-07 17:30:29,052 - DEBUG - Taking top 8 variants by coverage in window 9:58539794-58539795
2012-10-07 17:30:29,262 - DEBUG - Taking top 8 variants by coverage in window 9:58542917-58542918
2012-10-07 17:30:29,341 - DEBUG - Taking top 8 variants by coverage in window 9:58542980-58542982
2012-10-07 17:30:29,530 - DEBUG - Taking top 8 variants by coverage in window 9:58543004-58543005
2012-10-07 17:30:30,264 - DEBUG - Taking top 8 variants by coverage in window 9:58548962-58548963
2012-10-07 17:30:30,313 - DEBUG - Taking top 8 variants by coverage in window 9:58548967-58548968
2012-10-07 17:30:31,236 - DEBUG - Taking top 8 variants by coverage in window 9:58553553-58553557
2012-10-07 17:30:31,718 - DEBUG - Taking top 8 variants by coverage in window 9:58556834-58556835
2012-10-07 17:30:31,773 - DEBUG - Taking top 8 variants by coverage in window 9:58556901-58556902
2012-10-07 17:30:31,991 - DEBUG - Taking top 8 variants by coverage in window 9:58559506-58559507
2012-10-07 17:30:32,962 - DEBUG - Taking top 8 variants by coverage in window 9:58567618-58567619
2012-10-07 17:30:33,562 - DEBUG - Taking top 8 variants by coverage in window 9:58573526-58573527
2012-10-07 17:30:33,966 - DEBUG - Taking top 8 variants by coverage in window 9:58576677-58576678
2012-10-07 17:30:34,209 - DEBUG - Taking top 8 variants by coverage in window 9:58578843-58578844
2012-10-07 17:30:34,428 - DEBUG - Taking top 8 variants by coverage in window 9:58581469-58581470
2012-10-07 17:30:34,692 - DEBUG - Taking top 8 variants by coverage in window 9:58584228-58584229
2012-10-07 17:30:34,983 - DEBUG - Taking top 8 variants by coverage in window 9:58588435-58588436
2012-10-07 17:30:35,775 - DEBUG - Taking top 8 variants by coverage in window 9:58597540-58597545
2012-10-07 17:30:36,026 - DEBUG - Taking top 8 variants by coverage in window 9:58600842-58600843
2012-10-07 17:30:36,230 - DEBUG - Taking top 8 variants by coverage in window 9:58602972-58602984
2012-10-07 17:30:36,558 - DEBUG - Taking top 8 variants by coverage in window 9:58604294-58604295
2012-10-07 17:30:36,584 - DEBUG - Taking top 8 variants by coverage in window 9:58604308-58604309
2012-10-07 17:30:37,784 - DEBUG - Taking top 8 variants by coverage in window 9:58615377-58615396
2012-10-07 17:30:37,797 - DEBUG - Taking top 8 variants by coverage in window 9:58615586-58615587
2012-10-07 17:30:38,645 - DEBUG - Taking top 8 variants by coverage in window 9:58623961-58623962
2012-10-07 17:30:38,800 - DEBUG - Taking top 8 variants by coverage in window 9:58625518-58625519
2012-10-07 17:30:38,868 - DEBUG - Taking top 8 variants by coverage in window 9:58626182-58626183
2012-10-07 17:30:38,922 - DEBUG - Taking top 8 variants by coverage in window 9:58633493-58633494
2012-10-07 17:30:39,322 - DEBUG - Taking top 8 variants by coverage in window 9:58636709-58636712
2012-10-07 17:30:39,454 - DEBUG - Taking top 8 variants by coverage in window 9:58637215-58637222
2012-10-07 17:30:39,562 - DEBUG - Taking top 8 variants by coverage in window 9:58637283-58637290
2012-10-07 17:30:39,702 - DEBUG - Taking top 8 variants by coverage in window 9:58637309-58637315
2012-10-07 17:30:40,358 - DEBUG - Taking top 8 variants by coverage in window 9:58644448-58644449
2012-10-07 17:30:40,664 - DEBUG - Taking top 8 variants by coverage in window 9:58646649-58646650
2012-10-07 17:30:41,085 - DEBUG - Taking top 8 variants by coverage in window 9:58648783-58648789
2012-10-07 17:30:41,423 - DEBUG - Taking top 8 variants by coverage in window 9:58652119-58652120
2012-10-07 17:30:41,778 - DEBUG - Taking top 8 variants by coverage in window 9:58656404-58656405
2012-10-07 17:30:42,139 - DEBUG - Taking top 8 variants by coverage in window 9:58660717-58660718
2012-10-07 17:30:43,210 - DEBUG - Taking top 8 variants by coverage in window 9:58678322-58678324
2012-10-07 17:30:43,234 - DEBUG - Taking top 8 variants by coverage in window 9:58678338-58678339
2012-10-07 17:30:43,499 - DEBUG - Taking top 8 variants by coverage in window 9:58678531-58678532
2012-10-07 17:30:45,427 - DEBUG - Taking top 8 variants by coverage in window 9:58700011-58700012
2012-10-07 17:30:45,462 - DEBUG - Taking top 8 variants by coverage in window 9:58700020-58700021
2012-10-07 17:30:46,241 - DEBUG - Taking top 8 variants by coverage in window 9:58712027-58712028
2012-10-07 17:30:46,290 - DEBUG - Taking top 8 variants by coverage in window 9:58712571-58712581
2012-10-07 17:30:47,085 - DEBUG - Taking top 8 variants by coverage in window 9:58726645-58726646
2012-10-07 17:30:47,434 - DEBUG - Taking top 8 variants by coverage in window 9:58734404-58734405
2012-10-07 17:30:47,548 - DEBUG - Taking top 8 variants by coverage in window 9:58735552-58735553
2012-10-07 17:30:47,846 - DEBUG - Taking top 8 variants by coverage in window 9:58738757-58738760
2012-10-07 17:30:48,613 - DEBUG - Taking top 8 variants by coverage in window 9:58751582-58751583
2012-10-07 17:30:48,839 - DEBUG - Taking top 8 variants by coverage in window 9:58755312-58755313
2012-10-07 17:30:49,554 - DEBUG - Taking top 8 variants by coverage in window 9:58767723-58767724
2012-10-07 17:30:49,559 - DEBUG - Taking top 8 variants by coverage in window 9:58767724-58767727
2012-10-07 17:30:50,504 - DEBUG - Taking top 8 variants by coverage in window 9:58786920-58786921
2012-10-07 17:30:50,852 - DEBUG - Taking top 8 variants by coverage in window 9:58791608-58791614
2012-10-07 17:30:51,581 - DEBUG - Taking top 8 variants by coverage in window 9:58809660-58809666
2012-10-07 17:30:52,390 - DEBUG - Taking top 8 variants by coverage in window 9:58827050-58827051
2012-10-07 17:30:55,399 - DEBUG - Taking top 8 variants by coverage in window 9:58892343-58892344
2012-10-07 17:30:55,694 - DEBUG - Taking top 8 variants by coverage in window 9:58900522-58900523
2012-10-07 17:30:55,986 - DEBUG - Taking top 8 variants by coverage in window 9:58906595-58906596
2012-10-07 17:30:56,002 - DEBUG - Taking top 8 variants by coverage in window 9:58906602-58906603
2012-10-07 17:30:56,984 - DEBUG - Taking top 8 variants by coverage in window 9:58922719-58922720
2012-10-07 17:30:57,344 - DEBUG - Taking top 8 variants by coverage in window 9:58927196-58927197
2012-10-07 17:30:57,399 - DEBUG - Taking top 8 variants by coverage in window 9:58927215-58927216
2012-10-07 17:30:57,968 - DEBUG - Taking top 8 variants by coverage in window 9:58937395-58937396
2012-10-07 17:30:58,036 - DEBUG - Taking top 8 variants by coverage in window 9:58937741-58937742
2012-10-07 17:30:58,055 - DEBUG - Taking top 8 variants by coverage in window 9:58937781-58937782
2012-10-07 17:30:58,242 - DEBUG - Taking top 8 variants by coverage in window 9:58938635-58938638
2012-10-07 17:30:58,490 - DEBUG - Taking top 8 variants by coverage in window 9:58940874-58940876
2012-10-07 17:30:58,926 - DEBUG - Taking top 8 variants by coverage in window 9:58947951-58947952
2012-10-07 17:30:58,961 - DEBUG - Taking top 8 variants by coverage in window 9:58948059-58948060
2012-10-07 17:30:58,999 - DEBUG - Taking top 8 variants by coverage in window 9:58948297-58948298
2012-10-07 17:31:00,352 - DEBUG - Taking top 8 variants by coverage in window 9:58959195-58959196
2012-10-07 17:31:00,674 - DEBUG - Taking top 8 variants by coverage in window 9:58963306-58963307
2012-10-07 17:31:01,348 - DEBUG - Taking top 8 variants by coverage in window 9:58980461-58980462
2012-10-07 17:31:01,497 - DEBUG - Taking top 8 variants by coverage in window 9:58983323-58983324
2012-10-07 17:31:01,506 - DEBUG - Taking top 8 variants by coverage in window 9:58983340-58983341
2012-10-07 17:31:02,065 - DEBUG - Taking top 8 variants by coverage in window 9:58990487-58990488
2012-10-07 17:31:02,555 - DEBUG - Taking top 8 variants by coverage in window 9:58996937-58996938
2012-10-07 17:31:02,709 - DEBUG - Taking top 8 variants by coverage in window 9:58999383-58999384
2012-10-07 17:31:03,831 - DEBUG - Read 95715 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 17:31:04,073 - DEBUG - Read 105312 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 17:31:04,329 - DEBUG - Read 122794 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 17:31:04,624 - DEBUG - Read 128907 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 17:31:04,894 - DEBUG - Read 115318 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 17:31:05,147 - DEBUG - Read 115965 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 17:31:05,399 - DEBUG - Read 116793 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 17:31:05,645 - DEBUG - Read 105644 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 17:31:05,876 - DEBUG - Read 100610 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 17:31:06,111 - DEBUG - Read 100183 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 17:31:06,365 - DEBUG - Read 112545 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 17:31:06,590 - DEBUG - Read 100423 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 17:31:06,823 - DEBUG - Read 101318 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 17:31:07,060 - DEBUG - Read 113591 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 17:31:07,320 - DEBUG - Read 122547 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 17:31:07,540 - DEBUG - Read 93232 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 17:31:07,812 - DEBUG - Read 117846 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 17:31:08,065 - DEBUG - Read 112381 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 17:31:08,279 - DEBUG - Read 97061 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 17:31:08,510 - DEBUG - Read 97029 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 17:31:08,597 - DEBUG - Detected 19658 variants in 95715 reads
2012-10-07 17:31:08,737 - DEBUG - Detected 27257 variants in 105312 reads
2012-10-07 17:31:08,919 - DEBUG - Detected 36821 variants in 122794 reads
2012-10-07 17:31:09,138 - DEBUG - Detected 44047 variants in 128907 reads
2012-10-07 17:31:09,376 - DEBUG - Detected 49373 variants in 115318 reads
2012-10-07 17:31:09,637 - DEBUG - Detected 56096 variants in 115965 reads
2012-10-07 17:31:09,959 - DEBUG - Detected 68774 variants in 116793 reads
2012-10-07 17:31:10,302 - DEBUG - Detected 73465 variants in 105644 reads
2012-10-07 17:31:10,664 - DEBUG - Detected 78663 variants in 100610 reads
2012-10-07 17:31:11,049 - DEBUG - Detected 82803 variants in 100183 reads
2012-10-07 17:31:11,458 - DEBUG - Detected 87201 variants in 112545 reads
2012-10-07 17:31:11,880 - DEBUG - Detected 90948 variants in 100423 reads
2012-10-07 17:31:12,312 - DEBUG - Detected 94587 variants in 101318 reads
2012-10-07 17:31:12,812 - DEBUG - Detected 98814 variants in 113591 reads
2012-10-07 17:31:13,298 - DEBUG - Detected 106149 variants in 122547 reads
2012-10-07 17:31:13,795 - DEBUG - Detected 109820 variants in 93232 reads
2012-10-07 17:31:14,328 - DEBUG - Detected 113183 variants in 117846 reads
2012-10-07 17:31:14,868 - DEBUG - Detected 116876 variants in 112381 reads
2012-10-07 17:31:15,408 - DEBUG - Detected 120615 variants in 97061 reads
2012-10-07 17:31:16,022 - DEBUG - Detected 124398 variants in 97029 reads
2012-10-07 17:31:17,113 - DEBUG - Taking top 8 variants by coverage in window 9:59003159-59003167
2012-10-07 17:31:17,893 - DEBUG - Taking top 8 variants by coverage in window 9:59008514-59008516
2012-10-07 17:31:18,218 - DEBUG - Taking top 8 variants by coverage in window 9:59010032-59010035
2012-10-07 17:31:18,431 - DEBUG - Taking top 8 variants by coverage in window 9:59010064-59010066
2012-10-07 17:31:18,467 - DEBUG - Taking top 8 variants by coverage in window 9:59010067-59010068
2012-10-07 17:31:18,479 - DEBUG - Taking top 8 variants by coverage in window 9:59010069-59010078
2012-10-07 17:31:18,597 - DEBUG - Taking top 8 variants by coverage in window 9:59010106-59010107
2012-10-07 17:31:18,629 - DEBUG - Taking top 8 variants by coverage in window 9:59010150-59010151
2012-10-07 17:31:19,788 - DEBUG - Taking top 8 variants by coverage in window 9:59031270-59031271
2012-10-07 17:31:19,895 - DEBUG - Taking top 8 variants by coverage in window 9:59031702-59031703
2012-10-07 17:31:20,285 - DEBUG - Taking top 8 variants by coverage in window 9:59033800-59033811
2012-10-07 17:31:21,249 - DEBUG - Taking top 8 variants by coverage in window 9:59048249-59048250
2012-10-07 17:31:21,318 - DEBUG - Taking top 8 variants by coverage in window 9:59048498-59048499
2012-10-07 17:31:21,543 - DEBUG - Taking top 8 variants by coverage in window 9:59052286-59052287
2012-10-07 17:31:21,701 - DEBUG - Taking top 8 variants by coverage in window 9:59054104-59054105
2012-10-07 17:31:21,852 - DEBUG - Taking top 8 variants by coverage in window 9:59056295-59056312
2012-10-07 17:31:22,216 - DEBUG - Taking top 8 variants by coverage in window 9:59062463-59062464
2012-10-07 17:31:22,661 - DEBUG - Taking top 8 variants by coverage in window 9:59068977-59068983
2012-10-07 17:31:22,916 - DEBUG - Taking top 8 variants by coverage in window 9:59072167-59072169
2012-10-07 17:31:22,944 - DEBUG - Taking top 8 variants by coverage in window 9:59072388-59072389
2012-10-07 17:31:23,032 - DEBUG - Taking top 8 variants by coverage in window 9:59074506-59074507
2012-10-07 17:31:23,259 - DEBUG - Taking top 8 variants by coverage in window 9:59076376-59076377
2012-10-07 17:31:23,268 - DEBUG - Taking top 8 variants by coverage in window 9:59076392-59076393
2012-10-07 17:31:23,338 - DEBUG - Taking top 8 variants by coverage in window 9:59077254-59077255
2012-10-07 17:31:23,372 - DEBUG - Taking top 8 variants by coverage in window 9:59077965-59077970
2012-10-07 17:31:23,397 - DEBUG - Taking top 8 variants by coverage in window 9:59077991-59077992
2012-10-07 17:31:23,434 - DEBUG - Taking top 8 variants by coverage in window 9:59078664-59078668
2012-10-07 17:31:23,716 - DEBUG - Taking top 8 variants by coverage in window 9:59082457-59082458
2012-10-07 17:31:24,041 - DEBUG - Taking top 8 variants by coverage in window 9:59085486-59085487
2012-10-07 17:31:24,147 - DEBUG - Taking top 8 variants by coverage in window 9:59086756-59086757
2012-10-07 17:31:24,195 - DEBUG - Taking top 8 variants by coverage in window 9:59087012-59087013
2012-10-07 17:31:24,202 - DEBUG - Taking top 8 variants by coverage in window 9:59087013-59087014
2012-10-07 17:31:24,404 - DEBUG - Taking top 8 variants by coverage in window 9:59089399-59089400
2012-10-07 17:31:24,500 - DEBUG - Taking top 8 variants by coverage in window 9:59089817-59089818
2012-10-07 17:31:25,005 - DEBUG - Taking top 8 variants by coverage in window 9:59095741-59095746
2012-10-07 17:31:25,069 - DEBUG - Taking top 8 variants by coverage in window 9:59095949-59095950
2012-10-07 17:31:25,362 - DEBUG - Taking top 8 variants by coverage in window 9:59104260-59104261
2012-10-07 17:31:25,695 - DEBUG - Taking top 8 variants by coverage in window 9:59107145-59107147
2012-10-07 17:31:25,788 - DEBUG - Taking top 8 variants by coverage in window 9:59107378-59107379
2012-10-07 17:31:26,421 - DEBUG - Taking top 8 variants by coverage in window 9:59110104-59110106
2012-10-07 17:31:27,122 - DEBUG - Taking top 8 variants by coverage in window 9:59118552-59118553
2012-10-07 17:31:27,550 - DEBUG - Taking top 8 variants by coverage in window 9:59122712-59122713
2012-10-07 17:31:27,996 - DEBUG - Taking top 8 variants by coverage in window 9:59129726-59129727
2012-10-07 17:31:28,943 - DEBUG - Taking top 8 variants by coverage in window 9:59144155-59144156
2012-10-07 17:31:28,964 - DEBUG - Taking top 8 variants by coverage in window 9:59144184-59144185
2012-10-07 17:31:28,977 - DEBUG - Taking top 8 variants by coverage in window 9:59144187-59144189
2012-10-07 17:31:29,417 - DEBUG - Taking top 8 variants by coverage in window 9:59152239-59152247
2012-10-07 17:31:30,804 - DEBUG - Taking top 8 variants by coverage in window 9:59174086-59174087
2012-10-07 17:31:31,433 - DEBUG - Taking top 8 variants by coverage in window 9:59183493-59183501
2012-10-07 17:31:36,107 - DEBUG - Taking top 8 variants by coverage in window 9:59222798-59222802
2012-10-07 17:31:36,158 - DEBUG - Taking top 8 variants by coverage in window 9:59222814-59222820
2012-10-07 17:31:36,506 - DEBUG - Taking top 8 variants by coverage in window 9:59223791-59223792
2012-10-07 17:31:36,701 - DEBUG - Taking top 8 variants by coverage in window 9:59223957-59223958
2012-10-07 17:31:37,783 - DEBUG - Taking top 8 variants by coverage in window 9:59248488-59248490
2012-10-07 17:31:38,351 - DEBUG - Taking top 8 variants by coverage in window 9:59258850-59258851
2012-10-07 17:31:38,526 - DEBUG - Taking top 8 variants by coverage in window 9:59263351-59263352
2012-10-07 17:31:39,986 - DEBUG - Taking top 8 variants by coverage in window 9:59296045-59296046
2012-10-07 17:31:40,704 - DEBUG - Taking top 8 variants by coverage in window 9:59318472-59318473
2012-10-07 17:31:41,096 - DEBUG - Taking top 8 variants by coverage in window 9:59323594-59323603
2012-10-07 17:31:42,746 - DEBUG - Taking top 8 variants by coverage in window 9:59356942-59356943
2012-10-07 17:31:42,776 - DEBUG - Taking top 8 variants by coverage in window 9:59356945-59356946
2012-10-07 17:31:42,870 - DEBUG - Taking top 8 variants by coverage in window 9:59356968-59356969
2012-10-07 17:31:43,034 - DEBUG - Taking top 8 variants by coverage in window 9:59357532-59357533
2012-10-07 17:31:43,520 - DEBUG - Taking top 8 variants by coverage in window 9:59362473-59362474
2012-10-07 17:31:44,265 - DEBUG - Taking top 8 variants by coverage in window 9:59373410-59373413
2012-10-07 17:31:44,355 - DEBUG - Taking top 8 variants by coverage in window 9:59374228-59374229
2012-10-07 17:31:44,595 - DEBUG - Taking top 8 variants by coverage in window 9:59378424-59378425
2012-10-07 17:31:44,603 - DEBUG - Taking top 8 variants by coverage in window 9:59378441-59378442
2012-10-07 17:31:44,664 - DEBUG - Taking top 8 variants by coverage in window 9:59379118-59379119
2012-10-07 17:31:44,692 - DEBUG - Taking top 8 variants by coverage in window 9:59379182-59379183
2012-10-07 17:31:44,733 - DEBUG - Taking top 8 variants by coverage in window 9:59379230-59379231
2012-10-07 17:31:45,103 - DEBUG - Taking top 8 variants by coverage in window 9:59384333-59384342
2012-10-07 17:31:45,119 - DEBUG - Taking top 8 variants by coverage in window 9:59384345-59384349
2012-10-07 17:31:45,147 - DEBUG - Taking top 8 variants by coverage in window 9:59384353-59384354
2012-10-07 17:31:45,471 - DEBUG - Taking top 8 variants by coverage in window 9:59388039-59388040
2012-10-07 17:31:45,556 - DEBUG - Taking top 8 variants by coverage in window 9:59388783-59388784
2012-10-07 17:31:46,202 - DEBUG - Taking top 8 variants by coverage in window 9:59400951-59400952
2012-10-07 17:31:47,311 - DEBUG - Taking top 8 variants by coverage in window 9:59422413-59422417
2012-10-07 17:31:47,398 - DEBUG - Taking top 8 variants by coverage in window 9:59423411-59423412
2012-10-07 17:31:47,644 - DEBUG - Taking top 8 variants by coverage in window 9:59429059-59429060
2012-10-07 17:31:47,734 - DEBUG - Taking top 8 variants by coverage in window 9:59429097-59429098
2012-10-07 17:31:47,852 - DEBUG - Taking top 8 variants by coverage in window 9:59435501-59435502
2012-10-07 17:31:48,134 - DEBUG - Taking top 8 variants by coverage in window 9:59445083-59445084
2012-10-07 17:31:48,289 - DEBUG - Taking top 8 variants by coverage in window 9:59446957-59446959
2012-10-07 17:31:48,785 - DEBUG - Taking top 8 variants by coverage in window 9:59461807-59461808
2012-10-07 17:31:50,513 - DEBUG - Taking top 8 variants by coverage in window 9:59516483-59516488
2012-10-07 17:31:50,642 - DEBUG - Taking top 8 variants by coverage in window 9:59517672-59517673
2012-10-07 17:31:50,671 - DEBUG - Taking top 8 variants by coverage in window 9:59517855-59517856
2012-10-07 17:31:50,862 - DEBUG - Taking top 8 variants by coverage in window 9:59518953-59518960
2012-10-07 17:31:51,127 - DEBUG - Taking top 8 variants by coverage in window 9:59525235-59525236
2012-10-07 17:31:51,687 - DEBUG - Taking top 8 variants by coverage in window 9:59532146-59532147
2012-10-07 17:31:51,923 - DEBUG - Taking top 8 variants by coverage in window 9:59534875-59534876
2012-10-07 17:31:51,934 - DEBUG - Taking top 8 variants by coverage in window 9:59534880-59534881
2012-10-07 17:31:52,504 - DEBUG - Taking top 8 variants by coverage in window 9:59543478-59543479
2012-10-07 17:31:52,773 - DEBUG - Taking top 8 variants by coverage in window 9:59547848-59547849
2012-10-07 17:31:52,803 - DEBUG - Taking top 8 variants by coverage in window 9:59547851-59547854
2012-10-07 17:31:53,082 - DEBUG - Taking top 8 variants by coverage in window 9:59550826-59550827
2012-10-07 17:31:53,821 - DEBUG - Taking top 8 variants by coverage in window 9:59566239-59566240
2012-10-07 17:31:53,883 - DEBUG - Taking top 8 variants by coverage in window 9:59566317-59566318
2012-10-07 17:31:53,959 - DEBUG - Taking top 8 variants by coverage in window 9:59566703-59566704
2012-10-07 17:31:53,981 - DEBUG - Taking top 8 variants by coverage in window 9:59566777-59566797
2012-10-07 17:31:54,065 - DEBUG - Taking top 8 variants by coverage in window 9:59568019-59568020
2012-10-07 17:31:54,259 - DEBUG - Taking top 8 variants by coverage in window 9:59569458-59569459
2012-10-07 17:31:54,324 - DEBUG - Taking top 8 variants by coverage in window 9:59569747-59569748
2012-10-07 17:31:54,542 - DEBUG - Taking top 8 variants by coverage in window 9:59573161-59573162
2012-10-07 17:31:54,741 - DEBUG - Taking top 8 variants by coverage in window 9:59575776-59575777
2012-10-07 17:31:54,754 - DEBUG - Taking top 8 variants by coverage in window 9:59575788-59575789
2012-10-07 17:31:55,918 - DEBUG - Taking top 8 variants by coverage in window 9:59604782-59604784
2012-10-07 17:31:56,068 - DEBUG - Taking top 8 variants by coverage in window 9:59605437-59605438
2012-10-07 17:31:56,963 - DEBUG - Taking top 8 variants by coverage in window 9:59640023-59640024
2012-10-07 17:31:57,154 - DEBUG - Taking top 8 variants by coverage in window 9:59645674-59645676
2012-10-07 17:32:01,142 - DEBUG - Taking top 8 variants by coverage in window 9:59783485-59783496
2012-10-07 17:32:01,535 - DEBUG - Taking top 8 variants by coverage in window 9:59788973-59788974
2012-10-07 17:32:01,621 - DEBUG - Taking top 8 variants by coverage in window 9:59789396-59789397
2012-10-07 17:32:01,697 - DEBUG - Taking top 8 variants by coverage in window 9:59790239-59790241
2012-10-07 17:32:01,909 - DEBUG - Taking top 8 variants by coverage in window 9:59792617-59792618
2012-10-07 17:32:02,254 - DEBUG - Taking top 8 variants by coverage in window 9:59799461-59799462
2012-10-07 17:32:02,782 - DEBUG - Taking top 8 variants by coverage in window 9:59804276-59804277
2012-10-07 17:32:03,030 - DEBUG - Taking top 8 variants by coverage in window 9:59807739-59807740
2012-10-07 17:32:03,618 - DEBUG - Taking top 8 variants by coverage in window 9:59815375-59815376
2012-10-07 17:32:03,701 - DEBUG - Taking top 8 variants by coverage in window 9:59816434-59816436
2012-10-07 17:32:03,744 - DEBUG - Taking top 8 variants by coverage in window 9:59816464-59816465
2012-10-07 17:32:05,089 - DEBUG - Taking top 8 variants by coverage in window 9:59831304-59831305
2012-10-07 17:32:06,913 - DEBUG - Taking top 8 variants by coverage in window 9:59846622-59846625
2012-10-07 17:32:07,163 - DEBUG - Taking top 8 variants by coverage in window 9:59848514-59848517
2012-10-07 17:32:07,550 - DEBUG - Taking top 8 variants by coverage in window 9:59851814-59851815
2012-10-07 17:32:07,557 - DEBUG - Taking top 8 variants by coverage in window 9:59851815-59851816
2012-10-07 17:32:07,647 - DEBUG - Taking top 8 variants by coverage in window 9:59851875-59851876
2012-10-07 17:32:07,760 - DEBUG - Taking top 8 variants by coverage in window 9:59853552-59853553
2012-10-07 17:32:07,874 - DEBUG - Taking top 8 variants by coverage in window 9:59854519-59854520
2012-10-07 17:32:07,951 - DEBUG - Taking top 8 variants by coverage in window 9:59854789-59854795
2012-10-07 17:32:08,096 - DEBUG - Taking top 8 variants by coverage in window 9:59855723-59855734
2012-10-07 17:32:08,118 - DEBUG - Taking top 8 variants by coverage in window 9:59855747-59855748
2012-10-07 17:32:09,018 - DEBUG - Taking top 8 variants by coverage in window 9:59863991-59863992
2012-10-07 17:32:09,273 - DEBUG - Taking top 8 variants by coverage in window 9:59868584-59868585
2012-10-07 17:32:09,288 - DEBUG - Taking top 8 variants by coverage in window 9:59868645-59868646
2012-10-07 17:32:09,393 - DEBUG - Taking top 8 variants by coverage in window 9:59870541-59870550
2012-10-07 17:32:10,191 - DEBUG - Taking top 8 variants by coverage in window 9:59877276-59877277
2012-10-07 17:32:10,228 - DEBUG - Taking top 8 variants by coverage in window 9:59877290-59877298
2012-10-07 17:32:10,749 - DEBUG - Taking top 8 variants by coverage in window 9:59880883-59880884
2012-10-07 17:32:11,160 - DEBUG - Taking top 8 variants by coverage in window 9:59884005-59884006
2012-10-07 17:32:11,930 - DEBUG - Taking top 8 variants by coverage in window 9:59899610-59899613
2012-10-07 17:32:12,642 - DEBUG - Taking top 8 variants by coverage in window 9:59911411-59911412
2012-10-07 17:32:13,113 - DEBUG - Taking top 8 variants by coverage in window 9:59917261-59917267
2012-10-07 17:32:14,549 - DEBUG - Taking top 8 variants by coverage in window 9:59917750-59917751
2012-10-07 17:32:15,701 - DEBUG - Taking top 8 variants by coverage in window 9:59935273-59935276
2012-10-07 17:32:15,832 - DEBUG - Taking top 8 variants by coverage in window 9:59936193-59936207
2012-10-07 17:32:15,973 - DEBUG - Taking top 8 variants by coverage in window 9:59937165-59937166
2012-10-07 17:32:16,106 - DEBUG - Taking top 8 variants by coverage in window 9:59939095-59939096
2012-10-07 17:32:16,473 - DEBUG - Taking top 8 variants by coverage in window 9:59942976-59942977
2012-10-07 17:32:16,869 - DEBUG - Taking top 8 variants by coverage in window 9:59950791-59950792
2012-10-07 17:32:16,884 - DEBUG - Taking top 8 variants by coverage in window 9:59950806-59950807
2012-10-07 17:32:17,088 - DEBUG - Taking top 8 variants by coverage in window 9:59955516-59955520
2012-10-07 17:32:17,622 - DEBUG - Taking top 8 variants by coverage in window 9:59961032-59961042
2012-10-07 17:32:17,831 - DEBUG - Taking top 8 variants by coverage in window 9:59962237-59962238
2012-10-07 17:32:17,983 - DEBUG - Taking top 8 variants by coverage in window 9:59963402-59963403
2012-10-07 17:32:18,058 - DEBUG - Taking top 8 variants by coverage in window 9:59964044-59964047
2012-10-07 17:32:19,887 - DEBUG - Taking top 8 variants by coverage in window 9:59978145-59978146
2012-10-07 17:32:19,922 - DEBUG - Taking top 8 variants by coverage in window 9:59978499-59978505
2012-10-07 17:32:20,391 - DEBUG - Taking top 8 variants by coverage in window 9:59982198-59982199
2012-10-07 17:32:20,727 - DEBUG - Taking top 8 variants by coverage in window 9:59982310-59982314
2012-10-07 17:32:21,852 - DEBUG - Taking top 8 variants by coverage in window 9:59982420-59982422
2012-10-07 17:32:23,027 - DEBUG - Taking top 8 variants by coverage in window 9:59995134-59995135
2012-10-07 17:32:23,227 - DEBUG - Taking top 8 variants by coverage in window 9:59999410-59999411
2012-10-07 17:32:24,204 - DEBUG - Read 107153 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 17:32:24,469 - DEBUG - Read 116373 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 17:32:24,747 - DEBUG - Read 132575 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 17:32:25,068 - DEBUG - Read 136475 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 17:32:25,371 - DEBUG - Read 127159 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 17:32:25,639 - DEBUG - Read 122225 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 17:32:25,919 - DEBUG - Read 127450 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 17:32:26,197 - DEBUG - Read 118149 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 17:32:26,458 - DEBUG - Read 113009 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 17:32:26,719 - DEBUG - Read 110914 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 17:32:27,003 - DEBUG - Read 124817 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 17:32:27,255 - DEBUG - Read 114527 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 17:32:27,523 - DEBUG - Read 116812 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 17:32:27,787 - DEBUG - Read 126090 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 17:32:28,081 - DEBUG - Read 136852 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 17:32:28,331 - DEBUG - Read 106534 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 17:32:28,645 - DEBUG - Read 129712 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 17:32:28,922 - DEBUG - Read 123682 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 17:32:29,168 - DEBUG - Read 111359 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 17:32:29,423 - DEBUG - Read 106598 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 17:32:29,544 - DEBUG - Detected 27101 variants in 107153 reads
2012-10-07 17:32:29,742 - DEBUG - Detected 36366 variants in 116373 reads
2012-10-07 17:32:29,997 - DEBUG - Detected 48198 variants in 132575 reads
2012-10-07 17:32:30,317 - DEBUG - Detected 57175 variants in 136475 reads
2012-10-07 17:32:30,651 - DEBUG - Detected 66458 variants in 127159 reads
2012-10-07 17:32:31,018 - DEBUG - Detected 73074 variants in 122225 reads
2012-10-07 17:32:31,429 - DEBUG - Detected 87369 variants in 127450 reads
2012-10-07 17:32:31,895 - DEBUG - Detected 93681 variants in 118149 reads
2012-10-07 17:32:32,425 - DEBUG - Detected 100736 variants in 113009 reads
2012-10-07 17:32:32,948 - DEBUG - Detected 105690 variants in 110914 reads
2012-10-07 17:32:33,509 - DEBUG - Detected 111723 variants in 124817 reads
2012-10-07 17:32:34,089 - DEBUG - Detected 115971 variants in 114527 reads
2012-10-07 17:32:34,689 - DEBUG - Detected 120765 variants in 116812 reads
2012-10-07 17:32:35,382 - DEBUG - Detected 125936 variants in 126090 reads
2012-10-07 17:32:36,054 - DEBUG - Detected 134496 variants in 136852 reads
2012-10-07 17:32:36,733 - DEBUG - Detected 139012 variants in 106534 reads
2012-10-07 17:32:37,467 - DEBUG - Detected 143891 variants in 129712 reads
2012-10-07 17:32:38,280 - DEBUG - Detected 148460 variants in 123682 reads
2012-10-07 17:32:39,039 - DEBUG - Detected 153320 variants in 111359 reads
2012-10-07 17:32:39,815 - DEBUG - Detected 158244 variants in 106598 reads
2012-10-07 17:32:42,547 - DEBUG - Taking top 8 variants by coverage in window 9:60018640-60018641
2012-10-07 17:32:42,820 - DEBUG - Taking top 8 variants by coverage in window 9:60021779-60021780
2012-10-07 17:32:42,899 - DEBUG - Taking top 8 variants by coverage in window 9:60021879-60021880
2012-10-07 17:32:42,922 - DEBUG - Taking top 8 variants by coverage in window 9:60022108-60022111
2012-10-07 17:32:42,949 - DEBUG - Taking top 8 variants by coverage in window 9:60022116-60022117
2012-10-07 17:32:43,493 - DEBUG - Taking top 8 variants by coverage in window 9:60027077-60027078
2012-10-07 17:32:43,615 - DEBUG - Taking top 8 variants by coverage in window 9:60028285-60028286
2012-10-07 17:32:43,734 - DEBUG - Taking top 8 variants by coverage in window 9:60029130-60029131
2012-10-07 17:32:44,802 - DEBUG - Taking top 8 variants by coverage in window 9:60041041-60041046
2012-10-07 17:32:46,489 - DEBUG - Taking top 8 variants by coverage in window 9:60057138-60057139
2012-10-07 17:32:47,153 - DEBUG - Taking top 8 variants by coverage in window 9:60065187-60065189
2012-10-07 17:32:47,270 - DEBUG - Taking top 8 variants by coverage in window 9:60065794-60065805
2012-10-07 17:32:47,313 - DEBUG - Taking top 8 variants by coverage in window 9:60065825-60065826
2012-10-07 17:32:48,095 - DEBUG - Taking top 8 variants by coverage in window 9:60075581-60075593
2012-10-07 17:32:48,193 - DEBUG - Taking top 8 variants by coverage in window 9:60076430-60076431
2012-10-07 17:32:48,624 - DEBUG - Taking top 8 variants by coverage in window 9:60082521-60082522
2012-10-07 17:32:48,637 - DEBUG - Taking top 8 variants by coverage in window 9:60082537-60082538
2012-10-07 17:32:48,700 - DEBUG - Taking top 8 variants by coverage in window 9:60083631-60083634
2012-10-07 17:32:48,790 - DEBUG - Taking top 8 variants by coverage in window 9:60083742-60083743
2012-10-07 17:32:48,885 - DEBUG - Taking top 8 variants by coverage in window 9:60083796-60083797
2012-10-07 17:32:49,035 - DEBUG - Taking top 8 variants by coverage in window 9:60084675-60084685
2012-10-07 17:32:49,734 - DEBUG - Taking top 8 variants by coverage in window 9:60091949-60091955
2012-10-07 17:32:50,300 - DEBUG - Taking top 8 variants by coverage in window 9:60095597-60095598
2012-10-07 17:32:50,560 - DEBUG - Taking top 8 variants by coverage in window 9:60097777-60097788
2012-10-07 17:32:50,654 - DEBUG - Taking top 8 variants by coverage in window 9:60098507-60098508
2012-10-07 17:32:51,079 - DEBUG - Taking top 8 variants by coverage in window 9:60101938-60101939
2012-10-07 17:32:51,163 - DEBUG - Taking top 8 variants by coverage in window 9:60103048-60103055
2012-10-07 17:32:51,682 - DEBUG - Taking top 8 variants by coverage in window 9:60108091-60108092
2012-10-07 17:32:51,912 - DEBUG - Taking top 8 variants by coverage in window 9:60108609-60108610
2012-10-07 17:32:51,924 - DEBUG - Taking top 8 variants by coverage in window 9:60108623-60108632
2012-10-07 17:32:52,043 - DEBUG - Taking top 8 variants by coverage in window 9:60108649-60108651
2012-10-07 17:32:52,110 - DEBUG - Taking top 8 variants by coverage in window 9:60108671-60108672
2012-10-07 17:32:52,367 - DEBUG - Taking top 8 variants by coverage in window 9:60110041-60110044
2012-10-07 17:32:52,516 - DEBUG - Taking top 8 variants by coverage in window 9:60110259-60110270
2012-10-07 17:32:53,078 - DEBUG - Taking top 8 variants by coverage in window 9:60117013-60117014
2012-10-07 17:32:55,652 - DEBUG - Taking top 8 variants by coverage in window 9:60146252-60146255
2012-10-07 17:32:57,329 - DEBUG - Taking top 8 variants by coverage in window 9:60165641-60165642
2012-10-07 17:32:57,750 - DEBUG - Taking top 8 variants by coverage in window 9:60169727-60169728
2012-10-07 17:32:57,823 - DEBUG - Taking top 8 variants by coverage in window 9:60169738-60169739
2012-10-07 17:32:58,632 - DEBUG - Taking top 8 variants by coverage in window 9:60175667-60175670
2012-10-07 17:32:59,249 - DEBUG - Taking top 8 variants by coverage in window 9:60180981-60180985
2012-10-07 17:33:00,102 - DEBUG - Taking top 8 variants by coverage in window 9:60188837-60188857
2012-10-07 17:33:01,456 - DEBUG - Taking top 8 variants by coverage in window 9:60202660-60202669
2012-10-07 17:33:01,706 - DEBUG - Taking top 8 variants by coverage in window 9:60204242-60204245
2012-10-07 17:33:02,115 - DEBUG - Taking top 8 variants by coverage in window 9:60207694-60207714
2012-10-07 17:33:03,542 - DEBUG - Taking top 8 variants by coverage in window 9:60221438-60221441
2012-10-07 17:33:03,745 - DEBUG - Taking top 8 variants by coverage in window 9:60221708-60221721
2012-10-07 17:33:04,003 - DEBUG - Taking top 8 variants by coverage in window 9:60223700-60223701
2012-10-07 17:33:04,847 - DEBUG - Taking top 8 variants by coverage in window 9:60232077-60232078
2012-10-07 17:33:04,899 - DEBUG - Taking top 8 variants by coverage in window 9:60232249-60232250
2012-10-07 17:33:05,370 - DEBUG - Taking top 8 variants by coverage in window 9:60235157-60235161
2012-10-07 17:33:05,407 - DEBUG - Taking top 8 variants by coverage in window 9:60235777-60235779
2012-10-07 17:33:05,647 - DEBUG - Taking top 8 variants by coverage in window 9:60236380-60236381
2012-10-07 17:33:05,675 - DEBUG - Taking top 8 variants by coverage in window 9:60236399-60236400
2012-10-07 17:33:05,933 - DEBUG - Taking top 8 variants by coverage in window 9:60238803-60238804
2012-10-07 17:33:05,952 - DEBUG - Taking top 8 variants by coverage in window 9:60238805-60238807
2012-10-07 17:33:05,977 - DEBUG - Taking top 8 variants by coverage in window 9:60238817-60238819
2012-10-07 17:33:06,257 - DEBUG - Taking top 8 variants by coverage in window 9:60239492-60239494
2012-10-07 17:33:06,421 - DEBUG - Taking top 8 variants by coverage in window 9:60241582-60241583
2012-10-07 17:33:06,459 - DEBUG - Taking top 8 variants by coverage in window 9:60241712-60241713
2012-10-07 17:33:06,776 - DEBUG - Taking top 8 variants by coverage in window 9:60245527-60245528
2012-10-07 17:33:06,790 - DEBUG - Taking top 8 variants by coverage in window 9:60245553-60245554
2012-10-07 17:33:07,321 - DEBUG - Taking top 8 variants by coverage in window 9:60250608-60250609
2012-10-07 17:33:07,567 - DEBUG - Taking top 8 variants by coverage in window 9:60251624-60251625
2012-10-07 17:33:07,838 - DEBUG - Taking top 8 variants by coverage in window 9:60254801-60254806
2012-10-07 17:33:07,938 - DEBUG - Taking top 8 variants by coverage in window 9:60255818-60255819
2012-10-07 17:33:08,038 - DEBUG - Taking top 8 variants by coverage in window 9:60257097-60257098
2012-10-07 17:33:08,050 - DEBUG - Taking top 8 variants by coverage in window 9:60257205-60257206
2012-10-07 17:33:08,450 - DEBUG - Taking top 8 variants by coverage in window 9:60262330-60262337
2012-10-07 17:33:08,984 - DEBUG - Taking top 8 variants by coverage in window 9:60267598-60267599
2012-10-07 17:33:09,333 - DEBUG - Taking top 8 variants by coverage in window 9:60270230-60270231
2012-10-07 17:33:09,387 - DEBUG - Taking top 8 variants by coverage in window 9:60270615-60270624
2012-10-07 17:33:09,410 - DEBUG - Taking top 8 variants by coverage in window 9:60270635-60270636
2012-10-07 17:33:09,661 - DEBUG - Taking top 8 variants by coverage in window 9:60271698-60271699
2012-10-07 17:33:10,205 - DEBUG - Taking top 8 variants by coverage in window 9:60277390-60277391
2012-10-07 17:33:10,392 - DEBUG - Taking top 8 variants by coverage in window 9:60279083-60279084
2012-10-07 17:33:10,927 - DEBUG - Taking top 8 variants by coverage in window 9:60284871-60284873
2012-10-07 17:33:11,734 - DEBUG - Taking top 8 variants by coverage in window 9:60294831-60294832
2012-10-07 17:33:12,832 - DEBUG - Taking top 8 variants by coverage in window 9:60306846-60306864
2012-10-07 17:33:12,873 - DEBUG - Taking top 8 variants by coverage in window 9:60306920-60306921
2012-10-07 17:33:13,321 - DEBUG - Taking top 8 variants by coverage in window 9:60311108-60311109
2012-10-07 17:33:13,405 - DEBUG - Taking top 8 variants by coverage in window 9:60311531-60311538
2012-10-07 17:33:14,058 - DEBUG - Taking top 8 variants by coverage in window 9:60319922-60319923
2012-10-07 17:33:14,415 - DEBUG - Taking top 8 variants by coverage in window 9:60326635-60326636
2012-10-07 17:33:14,937 - DEBUG - Taking top 8 variants by coverage in window 9:60331410-60331416
2012-10-07 17:33:15,394 - DEBUG - Taking top 8 variants by coverage in window 9:60334901-60334902
2012-10-07 17:33:15,446 - DEBUG - Taking top 8 variants by coverage in window 9:60335005-60335006
2012-10-07 17:33:16,030 - DEBUG - Taking top 8 variants by coverage in window 9:60342170-60342171
2012-10-07 17:33:16,195 - DEBUG - Taking top 8 variants by coverage in window 9:60343948-60343949
2012-10-07 17:33:16,877 - DEBUG - Taking top 8 variants by coverage in window 9:60350953-60350954
2012-10-07 17:33:16,923 - DEBUG - Taking top 8 variants by coverage in window 9:60351521-60351522
2012-10-07 17:33:17,026 - DEBUG - Taking top 8 variants by coverage in window 9:60351590-60351595
2012-10-07 17:33:17,663 - DEBUG - Taking top 8 variants by coverage in window 9:60354387-60354390
2012-10-07 17:33:17,843 - DEBUG - Taking top 8 variants by coverage in window 9:60355566-60355567
2012-10-07 17:33:17,878 - DEBUG - Taking top 8 variants by coverage in window 9:60355605-60355611
2012-10-07 17:33:17,944 - DEBUG - Taking top 8 variants by coverage in window 9:60355626-60355627
2012-10-07 17:33:17,991 - DEBUG - Taking top 8 variants by coverage in window 9:60355650-60355651
2012-10-07 17:33:18,017 - DEBUG - Taking top 8 variants by coverage in window 9:60355651-60355652
2012-10-07 17:33:18,071 - DEBUG - Taking top 8 variants by coverage in window 9:60355655-60355656
2012-10-07 17:33:18,246 - DEBUG - Taking top 8 variants by coverage in window 9:60355691-60355692
2012-10-07 17:33:18,299 - DEBUG - Taking top 8 variants by coverage in window 9:60355697-60355698
2012-10-07 17:33:18,415 - DEBUG - Taking top 8 variants by coverage in window 9:60355703-60355704
2012-10-07 17:33:18,465 - DEBUG - Taking top 8 variants by coverage in window 9:60355705-60355706
2012-10-07 17:33:18,559 - DEBUG - Taking top 8 variants by coverage in window 9:60355726-60355729
2012-10-07 17:33:18,700 - DEBUG - Taking top 8 variants by coverage in window 9:60356525-60356527
2012-10-07 17:33:18,756 - DEBUG - Taking top 8 variants by coverage in window 9:60356551-60356552
2012-10-07 17:33:18,976 - DEBUG - Taking top 8 variants by coverage in window 9:60357563-60357564
2012-10-07 17:33:19,180 - DEBUG - Taking top 8 variants by coverage in window 9:60359500-60359511
2012-10-07 17:33:19,247 - DEBUG - Taking top 8 variants by coverage in window 9:60359993-60359995
2012-10-07 17:33:19,463 - DEBUG - Taking top 8 variants by coverage in window 9:60361993-60361994
2012-10-07 17:33:19,582 - DEBUG - Taking top 8 variants by coverage in window 9:60363489-60363490
2012-10-07 17:33:19,643 - DEBUG - Taking top 8 variants by coverage in window 9:60363522-60363523
2012-10-07 17:33:19,851 - DEBUG - Taking top 8 variants by coverage in window 9:60364899-60364900
2012-10-07 17:33:20,055 - DEBUG - Taking top 8 variants by coverage in window 9:60367519-60367520
2012-10-07 17:33:20,460 - DEBUG - Taking top 8 variants by coverage in window 9:60376594-60376595
2012-10-07 17:33:20,521 - DEBUG - Taking top 8 variants by coverage in window 9:60376747-60376748
2012-10-07 17:33:20,547 - DEBUG - Taking top 8 variants by coverage in window 9:60376930-60376931
2012-10-07 17:33:20,709 - DEBUG - Taking top 8 variants by coverage in window 9:60378414-60378424
2012-10-07 17:33:20,754 - DEBUG - Taking top 8 variants by coverage in window 9:60378475-60378476
2012-10-07 17:33:20,806 - DEBUG - Taking top 8 variants by coverage in window 9:60378502-60378504
2012-10-07 17:33:21,801 - DEBUG - Taking top 8 variants by coverage in window 9:60386906-60386915
2012-10-07 17:33:23,090 - DEBUG - Taking top 8 variants by coverage in window 9:60390742-60390743
2012-10-07 17:33:23,898 - DEBUG - Taking top 8 variants by coverage in window 9:60397612-60397618
2012-10-07 17:33:24,008 - DEBUG - Taking top 8 variants by coverage in window 9:60399379-60399382
2012-10-07 17:33:24,185 - DEBUG - Taking top 8 variants by coverage in window 9:60399491-60399494
2012-10-07 17:33:24,606 - DEBUG - Taking top 8 variants by coverage in window 9:60401490-60401498
2012-10-07 17:33:25,913 - DEBUG - Taking top 8 variants by coverage in window 9:60412971-60412972
2012-10-07 17:33:26,594 - DEBUG - Taking top 8 variants by coverage in window 9:60421297-60421302
2012-10-07 17:33:26,682 - DEBUG - Taking top 8 variants by coverage in window 9:60421898-60421899
2012-10-07 17:33:26,914 - DEBUG - Taking top 8 variants by coverage in window 9:60424595-60424596
2012-10-07 17:33:27,910 - DEBUG - Taking top 8 variants by coverage in window 9:60436368-60436370
2012-10-07 17:33:27,935 - DEBUG - Taking top 8 variants by coverage in window 9:60436407-60436408
2012-10-07 17:33:28,650 - DEBUG - Taking top 8 variants by coverage in window 9:60445109-60445110
2012-10-07 17:33:28,690 - DEBUG - Taking top 8 variants by coverage in window 9:60445509-60445510
2012-10-07 17:33:28,716 - DEBUG - Taking top 8 variants by coverage in window 9:60445540-60445541
2012-10-07 17:33:28,934 - DEBUG - Taking top 8 variants by coverage in window 9:60448113-60448114
2012-10-07 17:33:29,100 - DEBUG - Taking top 8 variants by coverage in window 9:60451298-60451299
2012-10-07 17:33:29,135 - DEBUG - Taking top 8 variants by coverage in window 9:60451360-60451361
2012-10-07 17:33:30,387 - DEBUG - Taking top 8 variants by coverage in window 9:60472690-60472692
2012-10-07 17:33:30,825 - DEBUG - Taking top 8 variants by coverage in window 9:60473983-60473984
2012-10-07 17:33:30,906 - DEBUG - Taking top 8 variants by coverage in window 9:60475165-60475166
2012-10-07 17:33:31,161 - DEBUG - Taking top 8 variants by coverage in window 9:60477010-60477011
2012-10-07 17:33:31,174 - DEBUG - Taking top 8 variants by coverage in window 9:60477028-60477029
2012-10-07 17:33:31,742 - DEBUG - Taking top 8 variants by coverage in window 9:60483329-60483337
2012-10-07 17:33:31,950 - DEBUG - Taking top 8 variants by coverage in window 9:60483394-60483395
2012-10-07 17:33:33,225 - DEBUG - Taking top 8 variants by coverage in window 9:60494693-60494694
2012-10-07 17:33:33,368 - DEBUG - Taking top 8 variants by coverage in window 9:60496200-60496201
2012-10-07 17:33:33,946 - DEBUG - Taking top 8 variants by coverage in window 9:60502230-60502231
2012-10-07 17:33:34,217 - DEBUG - Taking top 8 variants by coverage in window 9:60506944-60506945
2012-10-07 17:33:34,626 - DEBUG - Taking top 8 variants by coverage in window 9:60512336-60512337
2012-10-07 17:33:34,867 - DEBUG - Taking top 8 variants by coverage in window 9:60514243-60514249
2012-10-07 17:33:35,391 - DEBUG - Taking top 8 variants by coverage in window 9:60520667-60520668
2012-10-07 17:33:37,001 - DEBUG - Taking top 8 variants by coverage in window 9:60541745-60541746
2012-10-07 17:33:37,039 - DEBUG - Taking top 8 variants by coverage in window 9:60541855-60541856
2012-10-07 17:33:38,191 - DEBUG - Taking top 8 variants by coverage in window 9:60552984-60552985
2012-10-07 17:33:38,206 - DEBUG - Taking top 8 variants by coverage in window 9:60553017-60553029
2012-10-07 17:33:38,527 - DEBUG - Taking top 8 variants by coverage in window 9:60555057-60555058
2012-10-07 17:33:38,562 - DEBUG - Taking top 8 variants by coverage in window 9:60555287-60555288
2012-10-07 17:33:38,585 - DEBUG - Taking top 8 variants by coverage in window 9:60555304-60555305
2012-10-07 17:33:38,962 - DEBUG - Taking top 8 variants by coverage in window 9:60562498-60562499
2012-10-07 17:33:39,435 - DEBUG - Taking top 8 variants by coverage in window 9:60569332-60569335
2012-10-07 17:33:39,575 - DEBUG - Taking top 8 variants by coverage in window 9:60569908-60569909
2012-10-07 17:33:40,019 - DEBUG - Taking top 8 variants by coverage in window 9:60574021-60574023
2012-10-07 17:33:40,076 - DEBUG - Taking top 8 variants by coverage in window 9:60581107-60581108
2012-10-07 17:33:40,312 - DEBUG - Taking top 8 variants by coverage in window 9:60583091-60583093
2012-10-07 17:33:40,865 - DEBUG - Taking top 8 variants by coverage in window 9:60589946-60589947
2012-10-07 17:33:41,122 - DEBUG - Taking top 8 variants by coverage in window 9:60594051-60594052
2012-10-07 17:33:43,664 - DEBUG - Taking top 8 variants by coverage in window 9:60615093-60615094
2012-10-07 17:33:43,779 - DEBUG - Taking top 8 variants by coverage in window 9:60615761-60615762
2012-10-07 17:33:44,002 - DEBUG - Taking top 8 variants by coverage in window 9:60619376-60619377
2012-10-07 17:33:44,055 - DEBUG - Taking top 8 variants by coverage in window 9:60619505-60619506
2012-10-07 17:33:44,464 - DEBUG - Taking top 8 variants by coverage in window 9:60624305-60624306
2012-10-07 17:33:44,474 - DEBUG - Taking top 8 variants by coverage in window 9:60624321-60624322
2012-10-07 17:33:44,679 - DEBUG - Taking top 8 variants by coverage in window 9:60629817-60629818
2012-10-07 17:33:44,937 - DEBUG - Taking top 8 variants by coverage in window 9:60635153-60635154
2012-10-07 17:33:45,009 - DEBUG - Taking top 8 variants by coverage in window 9:60635205-60635206
2012-10-07 17:33:45,354 - DEBUG - Taking top 8 variants by coverage in window 9:60644677-60644678
2012-10-07 17:33:45,415 - DEBUG - Taking top 8 variants by coverage in window 9:60644891-60644892
2012-10-07 17:33:45,630 - DEBUG - Taking top 8 variants by coverage in window 9:60648222-60648223
2012-10-07 17:33:46,337 - DEBUG - Taking top 8 variants by coverage in window 9:60656483-60656484
2012-10-07 17:33:46,445 - DEBUG - Taking top 8 variants by coverage in window 9:60656629-60656630
2012-10-07 17:33:47,571 - DEBUG - Taking top 8 variants by coverage in window 9:60667699-60667700
2012-10-07 17:33:48,290 - DEBUG - Taking top 8 variants by coverage in window 9:60676266-60676267
2012-10-07 17:33:48,360 - DEBUG - Taking top 8 variants by coverage in window 9:60677076-60677087
2012-10-07 17:33:49,003 - DEBUG - Taking top 8 variants by coverage in window 9:60684662-60684663
2012-10-07 17:33:49,630 - DEBUG - Taking top 8 variants by coverage in window 9:60695513-60695520
2012-10-07 17:33:49,661 - DEBUG - Taking top 8 variants by coverage in window 9:60695665-60695666
2012-10-07 17:33:51,125 - DEBUG - Taking top 8 variants by coverage in window 9:60706201-60706202
2012-10-07 17:33:51,255 - DEBUG - Taking top 8 variants by coverage in window 9:60707287-60707288
2012-10-07 17:33:51,261 - DEBUG - Taking top 8 variants by coverage in window 9:60707288-60707294
2012-10-07 17:33:51,503 - DEBUG - Taking top 8 variants by coverage in window 9:60708150-60708151
2012-10-07 17:33:52,020 - DEBUG - Taking top 8 variants by coverage in window 9:60713578-60713579
2012-10-07 17:33:52,565 - DEBUG - Taking top 8 variants by coverage in window 9:60723662-60723668
2012-10-07 17:33:52,663 - DEBUG - Taking top 8 variants by coverage in window 9:60723702-60723708
2012-10-07 17:33:52,750 - DEBUG - Taking top 8 variants by coverage in window 9:60723716-60723722
2012-10-07 17:33:53,286 - DEBUG - Taking top 8 variants by coverage in window 9:60723772-60723776
2012-10-07 17:33:53,389 - DEBUG - Taking top 8 variants by coverage in window 9:60723788-60723792
2012-10-07 17:33:53,590 - DEBUG - Taking top 8 variants by coverage in window 9:60723793-60723801
2012-10-07 17:33:53,892 - DEBUG - Taking top 8 variants by coverage in window 9:60723826-60723843
2012-10-07 17:34:04,794 - DEBUG - Taking top 8 variants by coverage in window 9:60723868-60723870
2012-10-07 17:34:05,470 - DEBUG - Taking top 8 variants by coverage in window 9:60723886-60723892
2012-10-07 17:34:05,971 - DEBUG - Taking top 8 variants by coverage in window 9:60725215-60725219
2012-10-07 17:34:06,105 - DEBUG - Taking top 8 variants by coverage in window 9:60725260-60725261
2012-10-07 17:34:06,118 - DEBUG - Taking top 8 variants by coverage in window 9:60725559-60725562
2012-10-07 17:34:06,191 - DEBUG - Taking top 8 variants by coverage in window 9:60725608-60725609
2012-10-07 17:34:06,205 - DEBUG - Taking top 8 variants by coverage in window 9:60725610-60725612
2012-10-07 17:34:06,262 - DEBUG - Taking top 8 variants by coverage in window 9:60725629-60725630
2012-10-07 17:34:06,471 - DEBUG - Taking top 8 variants by coverage in window 9:60725811-60725816
2012-10-07 17:34:06,675 - DEBUG - Taking top 8 variants by coverage in window 9:60725933-60725940
2012-10-07 17:34:07,024 - DEBUG - Taking top 8 variants by coverage in window 9:60727597-60727599
2012-10-07 17:34:07,458 - DEBUG - Taking top 8 variants by coverage in window 9:60733691-60733692
2012-10-07 17:34:08,062 - DEBUG - Taking top 8 variants by coverage in window 9:60738570-60738571
2012-10-07 17:34:08,083 - DEBUG - Taking top 8 variants by coverage in window 9:60738572-60738573
2012-10-07 17:34:08,385 - DEBUG - Taking top 8 variants by coverage in window 9:60740436-60740437
2012-10-07 17:34:09,016 - DEBUG - Taking top 8 variants by coverage in window 9:60745884-60745885
2012-10-07 17:34:09,051 - DEBUG - Taking top 8 variants by coverage in window 9:60746725-60746726
2012-10-07 17:34:09,388 - DEBUG - Taking top 8 variants by coverage in window 9:60751519-60751521
2012-10-07 17:34:09,625 - DEBUG - Taking top 8 variants by coverage in window 9:60753897-60753898
2012-10-07 17:34:09,655 - DEBUG - Taking top 8 variants by coverage in window 9:60754085-60754106
2012-10-07 17:34:09,728 - DEBUG - Taking top 8 variants by coverage in window 9:60754367-60754368
2012-10-07 17:34:10,683 - DEBUG - Taking top 8 variants by coverage in window 9:60768280-60768281
2012-10-07 17:34:10,705 - DEBUG - Taking top 8 variants by coverage in window 9:60768312-60768313
2012-10-07 17:34:10,791 - DEBUG - Taking top 8 variants by coverage in window 9:60769538-60769539
2012-10-07 17:34:10,803 - DEBUG - Taking top 8 variants by coverage in window 9:60769541-60769547
2012-10-07 17:34:10,929 - DEBUG - Taking top 8 variants by coverage in window 9:60771133-60771136
2012-10-07 17:34:11,612 - DEBUG - Taking top 8 variants by coverage in window 9:60780981-60780982
2012-10-07 17:34:11,764 - DEBUG - Taking top 8 variants by coverage in window 9:60781030-60781032
2012-10-07 17:34:12,661 - DEBUG - Taking top 8 variants by coverage in window 9:60789800-60789804
2012-10-07 17:34:12,728 - DEBUG - Taking top 8 variants by coverage in window 9:60789821-60789822
2012-10-07 17:34:12,873 - DEBUG - Taking top 8 variants by coverage in window 9:60790559-60790560
2012-10-07 17:34:13,642 - DEBUG - Taking top 8 variants by coverage in window 9:60801907-60801908
2012-10-07 17:34:14,006 - DEBUG - Taking top 8 variants by coverage in window 9:60805329-60805330
2012-10-07 17:34:14,127 - DEBUG - Taking top 8 variants by coverage in window 9:60807182-60807183
2012-10-07 17:34:14,784 - DEBUG - Taking top 8 variants by coverage in window 9:60814799-60814816
2012-10-07 17:34:15,192 - DEBUG - Taking top 8 variants by coverage in window 9:60816015-60816038
2012-10-07 17:34:15,680 - DEBUG - Taking top 8 variants by coverage in window 9:60823385-60823388
2012-10-07 17:34:15,859 - DEBUG - Taking top 8 variants by coverage in window 9:60825444-60825445
2012-10-07 17:34:16,885 - DEBUG - Taking top 8 variants by coverage in window 9:60837054-60837058
2012-10-07 17:34:17,023 - DEBUG - Taking top 8 variants by coverage in window 9:60837903-60837904
2012-10-07 17:34:17,067 - DEBUG - Taking top 8 variants by coverage in window 9:60837943-60837944
2012-10-07 17:34:17,178 - DEBUG - Taking top 8 variants by coverage in window 9:60839695-60839699
2012-10-07 17:34:17,308 - DEBUG - Taking top 8 variants by coverage in window 9:60840066-60840067
2012-10-07 17:34:17,518 - DEBUG - Taking top 8 variants by coverage in window 9:60840824-60840835
2012-10-07 17:34:17,576 - DEBUG - Taking top 8 variants by coverage in window 9:60840868-60840869
2012-10-07 17:34:17,874 - DEBUG - Taking top 8 variants by coverage in window 9:60844280-60844281
2012-10-07 17:34:18,017 - DEBUG - Taking top 8 variants by coverage in window 9:60845748-60845749
2012-10-07 17:34:18,406 - DEBUG - Taking top 8 variants by coverage in window 9:60848914-60848915
2012-10-07 17:34:18,832 - DEBUG - Taking top 8 variants by coverage in window 9:60854229-60854230
2012-10-07 17:34:18,946 - DEBUG - Taking top 8 variants by coverage in window 9:60855372-60855373
2012-10-07 17:34:18,954 - DEBUG - Taking top 8 variants by coverage in window 9:60855396-60855397
2012-10-07 17:34:18,993 - DEBUG - Taking top 8 variants by coverage in window 9:60856653-60856654
2012-10-07 17:34:19,009 - DEBUG - Taking top 8 variants by coverage in window 9:60856665-60856666
2012-10-07 17:34:19,155 - DEBUG - Taking top 8 variants by coverage in window 9:60857896-60857899
2012-10-07 17:34:19,279 - DEBUG - Taking top 8 variants by coverage in window 9:60857903-60857904
2012-10-07 17:34:19,550 - DEBUG - Taking top 8 variants by coverage in window 9:60858956-60858959
2012-10-07 17:34:20,007 - DEBUG - Taking top 8 variants by coverage in window 9:60866020-60866021
2012-10-07 17:34:20,242 - DEBUG - Taking top 8 variants by coverage in window 9:60869324-60869325
2012-10-07 17:34:20,454 - DEBUG - Taking top 8 variants by coverage in window 9:60871467-60871468
2012-10-07 17:34:20,717 - DEBUG - Taking top 8 variants by coverage in window 9:60874047-60874048
2012-10-07 17:34:20,736 - DEBUG - Taking top 8 variants by coverage in window 9:60874067-60874068
2012-10-07 17:34:21,107 - DEBUG - Taking top 8 variants by coverage in window 9:60877599-60877600
2012-10-07 17:34:21,126 - DEBUG - Taking top 8 variants by coverage in window 9:60877600-60877601
2012-10-07 17:34:21,163 - DEBUG - Taking top 8 variants by coverage in window 9:60877625-60877626
2012-10-07 17:34:21,227 - DEBUG - Taking top 8 variants by coverage in window 9:60878431-60878432
2012-10-07 17:34:21,429 - DEBUG - Taking top 8 variants by coverage in window 9:60881456-60881457
2012-10-07 17:34:21,838 - DEBUG - Taking top 8 variants by coverage in window 9:60885049-60885050
2012-10-07 17:34:22,066 - DEBUG - Taking top 8 variants by coverage in window 9:60888226-60888227
2012-10-07 17:34:22,172 - DEBUG - Taking top 8 variants by coverage in window 9:60888756-60888757
2012-10-07 17:34:22,236 - DEBUG - Taking top 8 variants by coverage in window 9:60888776-60888777
2012-10-07 17:34:22,890 - DEBUG - Taking top 8 variants by coverage in window 9:60899149-60899150
2012-10-07 17:34:23,764 - DEBUG - Taking top 8 variants by coverage in window 9:60911871-60911873
2012-10-07 17:34:24,327 - DEBUG - Taking top 8 variants by coverage in window 9:60911933-60911934
2012-10-07 17:34:24,673 - DEBUG - Taking top 8 variants by coverage in window 9:60915738-60915739
2012-10-07 17:34:24,980 - DEBUG - Taking top 8 variants by coverage in window 9:60921018-60921025
2012-10-07 17:34:25,013 - DEBUG - Taking top 8 variants by coverage in window 9:60921042-60921043
2012-10-07 17:34:25,260 - DEBUG - Taking top 8 variants by coverage in window 9:60922698-60922699
2012-10-07 17:34:26,195 - DEBUG - Taking top 8 variants by coverage in window 9:60937659-60937660
2012-10-07 17:34:26,297 - DEBUG - Taking top 8 variants by coverage in window 9:60938029-60938037
2012-10-07 17:34:26,347 - DEBUG - Taking top 8 variants by coverage in window 9:60938045-60938046
2012-10-07 17:34:26,691 - DEBUG - Taking top 8 variants by coverage in window 9:60945558-60945563
2012-10-07 17:34:26,878 - DEBUG - Taking top 8 variants by coverage in window 9:60948090-60948091
2012-10-07 17:34:27,760 - DEBUG - Taking top 8 variants by coverage in window 9:60958356-60958357
2012-10-07 17:34:27,932 - DEBUG - Taking top 8 variants by coverage in window 9:60959697-60959698
2012-10-07 17:34:28,184 - DEBUG - Taking top 8 variants by coverage in window 9:60964330-60964331
2012-10-07 17:34:28,534 - DEBUG - Taking top 8 variants by coverage in window 9:60968245-60968246
2012-10-07 17:34:28,753 - DEBUG - Taking top 8 variants by coverage in window 9:60970342-60970343
2012-10-07 17:34:28,800 - DEBUG - Taking top 8 variants by coverage in window 9:60970431-60970432
2012-10-07 17:34:28,853 - DEBUG - Taking top 8 variants by coverage in window 9:60971978-60971979
2012-10-07 17:34:28,922 - DEBUG - Taking top 8 variants by coverage in window 9:60972557-60972558
2012-10-07 17:34:29,018 - DEBUG - Taking top 8 variants by coverage in window 9:60974023-60974024
2012-10-07 17:34:29,530 - DEBUG - Taking top 8 variants by coverage in window 9:60980693-60980694
2012-10-07 17:34:29,740 - DEBUG - Taking top 8 variants by coverage in window 9:60982958-60982959
2012-10-07 17:34:29,883 - DEBUG - Taking top 8 variants by coverage in window 9:60983219-60983220
2012-10-07 17:34:30,262 - DEBUG - Taking top 8 variants by coverage in window 9:60988872-60988873
2012-10-07 17:34:31,100 - DEBUG - Taking top 8 variants by coverage in window 9:60991465-60991466
2012-10-07 17:34:31,136 - DEBUG - Taking top 8 variants by coverage in window 9:60991466-60991467
2012-10-07 17:34:31,314 - DEBUG - Taking top 8 variants by coverage in window 9:60991528-60991529
2012-10-07 17:34:31,409 - DEBUG - Taking top 8 variants by coverage in window 9:60991530-60991531
2012-10-07 17:34:33,083 - DEBUG - Read 108952 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 17:34:33,358 - DEBUG - Read 119131 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 17:34:33,641 - DEBUG - Read 134579 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 17:34:33,973 - DEBUG - Read 140989 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 17:34:34,284 - DEBUG - Read 129569 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 17:34:34,557 - DEBUG - Read 123410 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 17:34:34,906 - DEBUG - Read 130136 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 17:34:35,194 - DEBUG - Read 121244 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 17:34:35,460 - DEBUG - Read 115302 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 17:34:35,724 - DEBUG - Read 111300 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 17:34:36,014 - DEBUG - Read 126431 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 17:34:36,273 - DEBUG - Read 116511 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 17:34:36,545 - DEBUG - Read 119023 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 17:34:36,816 - DEBUG - Read 129277 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 17:34:37,116 - DEBUG - Read 139030 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 17:34:37,370 - DEBUG - Read 107234 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 17:34:37,651 - DEBUG - Read 132151 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 17:34:37,937 - DEBUG - Read 124654 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 17:34:38,195 - DEBUG - Read 116544 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 17:34:38,525 - DEBUG - Read 108053 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 17:34:38,638 - DEBUG - Detected 25276 variants in 108952 reads
2012-10-07 17:34:38,822 - DEBUG - Detected 36052 variants in 119131 reads
2012-10-07 17:34:39,061 - DEBUG - Detected 44221 variants in 134579 reads
2012-10-07 17:34:39,362 - DEBUG - Detected 52287 variants in 140989 reads
2012-10-07 17:34:39,669 - DEBUG - Detected 59777 variants in 129569 reads
2012-10-07 17:34:40,005 - DEBUG - Detected 66627 variants in 123410 reads
2012-10-07 17:34:40,387 - DEBUG - Detected 81416 variants in 130136 reads
2012-10-07 17:34:40,834 - DEBUG - Detected 87639 variants in 121244 reads
2012-10-07 17:34:41,295 - DEBUG - Detected 93813 variants in 115302 reads
2012-10-07 17:34:41,824 - DEBUG - Detected 99105 variants in 111300 reads
2012-10-07 17:34:42,349 - DEBUG - Detected 104235 variants in 126431 reads
2012-10-07 17:34:42,888 - DEBUG - Detected 108827 variants in 116511 reads
2012-10-07 17:34:43,453 - DEBUG - Detected 113592 variants in 119023 reads
2012-10-07 17:34:44,048 - DEBUG - Detected 118589 variants in 129277 reads
2012-10-07 17:34:44,736 - DEBUG - Detected 126618 variants in 139030 reads
2012-10-07 17:34:45,377 - DEBUG - Detected 130831 variants in 107234 reads
2012-10-07 17:34:46,063 - DEBUG - Detected 134740 variants in 132151 reads
2012-10-07 17:34:46,764 - DEBUG - Detected 138942 variants in 124654 reads
2012-10-07 17:34:47,476 - DEBUG - Detected 144033 variants in 116544 reads
2012-10-07 17:34:48,258 - DEBUG - Detected 148694 variants in 108053 reads
2012-10-07 17:34:49,759 - DEBUG - Taking top 8 variants by coverage in window 9:61002943-61002945
2012-10-07 17:34:49,893 - DEBUG - Taking top 8 variants by coverage in window 9:61005707-61005708
2012-10-07 17:34:50,879 - DEBUG - Taking top 8 variants by coverage in window 9:61021750-61021751
2012-10-07 17:34:51,111 - DEBUG - Taking top 8 variants by coverage in window 9:61022306-61022308
2012-10-07 17:34:51,344 - DEBUG - Taking top 8 variants by coverage in window 9:61024528-61024529
2012-10-07 17:34:51,458 - DEBUG - Taking top 8 variants by coverage in window 9:61024551-61024552
2012-10-07 17:34:51,511 - DEBUG - Taking top 8 variants by coverage in window 9:61024573-61024574
2012-10-07 17:34:51,530 - DEBUG - Taking top 8 variants by coverage in window 9:61024575-61024576
2012-10-07 17:34:51,553 - DEBUG - Taking top 8 variants by coverage in window 9:61024577-61024579
2012-10-07 17:34:52,116 - DEBUG - Taking top 8 variants by coverage in window 9:61031153-61031158
2012-10-07 17:34:52,806 - DEBUG - Taking top 8 variants by coverage in window 9:61037302-61037305
2012-10-07 17:34:52,914 - DEBUG - Taking top 8 variants by coverage in window 9:61038489-61038490
2012-10-07 17:34:53,145 - DEBUG - Taking top 8 variants by coverage in window 9:61040990-61040995
2012-10-07 17:34:53,178 - DEBUG - Taking top 8 variants by coverage in window 9:61041031-61041032
2012-10-07 17:34:53,224 - DEBUG - Taking top 8 variants by coverage in window 9:61041591-61041592
2012-10-07 17:34:53,690 - DEBUG - Taking top 8 variants by coverage in window 9:61048773-61048777
2012-10-07 17:34:53,821 - DEBUG - Taking top 8 variants by coverage in window 9:61050562-61050568
2012-10-07 17:34:53,974 - DEBUG - Taking top 8 variants by coverage in window 9:61051818-61051819
2012-10-07 17:34:54,255 - DEBUG - Taking top 8 variants by coverage in window 9:61057571-61057577
2012-10-07 17:34:54,309 - DEBUG - Taking top 8 variants by coverage in window 9:61058504-61058506
2012-10-07 17:34:54,958 - DEBUG - Taking top 8 variants by coverage in window 9:61068504-61068505
2012-10-07 17:34:54,979 - DEBUG - Taking top 8 variants by coverage in window 9:61068511-61068512
2012-10-07 17:34:55,013 - DEBUG - Taking top 8 variants by coverage in window 9:61068862-61068864
2012-10-07 17:34:55,195 - DEBUG - Taking top 8 variants by coverage in window 9:61070306-61070307
2012-10-07 17:34:55,489 - DEBUG - Taking top 8 variants by coverage in window 9:61072759-61072760
2012-10-07 17:34:55,567 - DEBUG - Taking top 8 variants by coverage in window 9:61073705-61073706
2012-10-07 17:34:55,864 - DEBUG - Taking top 8 variants by coverage in window 9:61078488-61078504
2012-10-07 17:34:56,613 - DEBUG - Taking top 8 variants by coverage in window 9:61088502-61088503
2012-10-07 17:34:56,739 - DEBUG - Taking top 8 variants by coverage in window 9:61089772-61089773
2012-10-07 17:34:57,280 - DEBUG - Taking top 8 variants by coverage in window 9:61099050-61099054
2012-10-07 17:34:57,555 - DEBUG - Taking top 8 variants by coverage in window 9:61101895-61101896
2012-10-07 17:34:57,943 - DEBUG - Taking top 8 variants by coverage in window 9:61104327-61104330
2012-10-07 17:34:58,000 - DEBUG - Taking top 8 variants by coverage in window 9:61104337-61104340
2012-10-07 17:34:58,067 - DEBUG - Taking top 8 variants by coverage in window 9:61104372-61104373
2012-10-07 17:34:58,083 - DEBUG - Taking top 8 variants by coverage in window 9:61104390-61104396
2012-10-07 17:34:58,982 - DEBUG - Taking top 8 variants by coverage in window 9:61119115-61119133
2012-10-07 17:34:59,868 - DEBUG - Taking top 8 variants by coverage in window 9:61129027-61129028
2012-10-07 17:34:59,896 - DEBUG - Taking top 8 variants by coverage in window 9:61129413-61129414
2012-10-07 17:34:59,926 - DEBUG - Taking top 8 variants by coverage in window 9:61129460-61129470
2012-10-07 17:35:00,347 - DEBUG - Taking top 8 variants by coverage in window 9:61137435-61137436
2012-10-07 17:35:00,366 - DEBUG - Taking top 8 variants by coverage in window 9:61137451-61137452
2012-10-07 17:35:00,418 - DEBUG - Taking top 8 variants by coverage in window 9:61138541-61138542
2012-10-07 17:35:01,134 - DEBUG - Taking top 8 variants by coverage in window 9:61151319-61151320
2012-10-07 17:35:01,225 - DEBUG - Taking top 8 variants by coverage in window 9:61152341-61152342
2012-10-07 17:35:01,752 - DEBUG - Taking top 8 variants by coverage in window 9:61159310-61159317
2012-10-07 17:35:01,828 - DEBUG - Taking top 8 variants by coverage in window 9:61160192-61160193
2012-10-07 17:35:03,667 - DEBUG - Taking top 8 variants by coverage in window 9:61197947-61197950
2012-10-07 17:35:03,939 - DEBUG - Taking top 8 variants by coverage in window 9:61202493-61202504
2012-10-07 17:35:04,998 - DEBUG - Taking top 8 variants by coverage in window 9:61229912-61229913
2012-10-07 17:35:05,340 - DEBUG - Taking top 8 variants by coverage in window 9:61235161-61235162
2012-10-07 17:35:05,397 - DEBUG - Taking top 8 variants by coverage in window 9:61236405-61236406
2012-10-07 17:35:05,416 - DEBUG - Taking top 8 variants by coverage in window 9:61236412-61236413
2012-10-07 17:35:05,817 - DEBUG - Taking top 8 variants by coverage in window 9:61241758-61241759
2012-10-07 17:35:05,897 - DEBUG - Taking top 8 variants by coverage in window 9:61243079-61243080
2012-10-07 17:35:06,306 - DEBUG - Taking top 8 variants by coverage in window 9:61250826-61250827
2012-10-07 17:35:07,335 - DEBUG - Taking top 8 variants by coverage in window 9:61267923-61267926
2012-10-07 17:35:07,667 - DEBUG - Taking top 8 variants by coverage in window 9:61268956-61268957
2012-10-07 17:35:07,707 - DEBUG - Taking top 8 variants by coverage in window 9:61268963-61268964
2012-10-07 17:35:08,185 - DEBUG - Taking top 8 variants by coverage in window 9:61272615-61272618
2012-10-07 17:35:08,646 - DEBUG - Taking top 8 variants by coverage in window 9:61273717-61273718
2012-10-07 17:35:08,799 - DEBUG - Taking top 8 variants by coverage in window 9:61275696-61275697
2012-10-07 17:35:09,002 - DEBUG - Taking top 8 variants by coverage in window 9:61278236-61278250
2012-10-07 17:35:09,066 - DEBUG - Taking top 8 variants by coverage in window 9:61278283-61278284
2012-10-07 17:35:09,147 - DEBUG - Taking top 8 variants by coverage in window 9:61279110-61279111
2012-10-07 17:35:09,178 - DEBUG - Taking top 8 variants by coverage in window 9:61279113-61279114
2012-10-07 17:35:09,203 - DEBUG - Taking top 8 variants by coverage in window 9:61279120-61279122
2012-10-07 17:35:09,388 - DEBUG - Taking top 8 variants by coverage in window 9:61280427-61280428
2012-10-07 17:35:10,063 - DEBUG - Taking top 8 variants by coverage in window 9:61292644-61292645
2012-10-07 17:35:10,477 - DEBUG - Taking top 8 variants by coverage in window 9:61299443-61299444
2012-10-07 17:35:11,414 - DEBUG - Taking top 8 variants by coverage in window 9:61312210-61312211
2012-10-07 17:35:11,483 - DEBUG - Taking top 8 variants by coverage in window 9:61312731-61312732
2012-10-07 17:35:11,505 - DEBUG - Taking top 8 variants by coverage in window 9:61312836-61312840
2012-10-07 17:35:11,829 - DEBUG - Taking top 8 variants by coverage in window 9:61316778-61316782
2012-10-07 17:35:11,971 - DEBUG - Taking top 8 variants by coverage in window 9:61317411-61317415
2012-10-07 17:35:11,977 - DEBUG - Taking top 8 variants by coverage in window 9:61317417-61317421
2012-10-07 17:35:12,513 - DEBUG - Taking top 8 variants by coverage in window 9:61322925-61322928
2012-10-07 17:35:12,833 - DEBUG - Taking top 8 variants by coverage in window 9:61326001-61326002
2012-10-07 17:35:12,846 - DEBUG - Taking top 8 variants by coverage in window 9:61326005-61326006
2012-10-07 17:35:13,037 - DEBUG - Taking top 8 variants by coverage in window 9:61326220-61326221
2012-10-07 17:35:13,280 - DEBUG - Taking top 8 variants by coverage in window 9:61326607-61326608
2012-10-07 17:35:13,689 - DEBUG - Taking top 8 variants by coverage in window 9:61332562-61332563
2012-10-07 17:35:14,196 - DEBUG - Taking top 8 variants by coverage in window 9:61340596-61340601
2012-10-07 17:35:14,867 - DEBUG - Taking top 8 variants by coverage in window 9:61345953-61345954
2012-10-07 17:35:15,038 - DEBUG - Taking top 8 variants by coverage in window 9:61348311-61348321
2012-10-07 17:35:15,560 - DEBUG - Taking top 8 variants by coverage in window 9:61354425-61354426
2012-10-07 17:35:15,759 - DEBUG - Taking top 8 variants by coverage in window 9:61358728-61358731
2012-10-07 17:35:16,331 - DEBUG - Taking top 8 variants by coverage in window 9:61364791-61364792
2012-10-07 17:35:16,343 - DEBUG - Taking top 8 variants by coverage in window 9:61364806-61364807
2012-10-07 17:35:16,526 - DEBUG - Taking top 8 variants by coverage in window 9:61366588-61366589
2012-10-07 17:35:16,537 - DEBUG - Taking top 8 variants by coverage in window 9:61366589-61366590
2012-10-07 17:35:16,877 - DEBUG - Taking top 8 variants by coverage in window 9:61369426-61369429
2012-10-07 17:35:17,314 - DEBUG - Taking top 8 variants by coverage in window 9:61374528-61374529
2012-10-07 17:35:18,021 - DEBUG - Taking top 8 variants by coverage in window 9:61376633-61376635
2012-10-07 17:35:18,167 - DEBUG - Taking top 8 variants by coverage in window 9:61377733-61377734
2012-10-07 17:35:18,220 - DEBUG - Taking top 8 variants by coverage in window 9:61378973-61378974
2012-10-07 17:35:18,237 - DEBUG - Taking top 8 variants by coverage in window 9:61378995-61378997
2012-10-07 17:35:18,622 - DEBUG - Taking top 8 variants by coverage in window 9:61383581-61383582
2012-10-07 17:35:19,283 - DEBUG - Taking top 8 variants by coverage in window 9:61394032-61394033
2012-10-07 17:35:19,523 - DEBUG - Taking top 8 variants by coverage in window 9:61397089-61397090
2012-10-07 17:35:19,690 - DEBUG - Taking top 8 variants by coverage in window 9:61398967-61398968
2012-10-07 17:35:19,860 - DEBUG - Taking top 8 variants by coverage in window 9:61400082-61400083
2012-10-07 17:35:19,911 - DEBUG - Taking top 8 variants by coverage in window 9:61400114-61400116
2012-10-07 17:35:20,236 - DEBUG - Taking top 8 variants by coverage in window 9:61400186-61400189
2012-10-07 17:35:20,489 - DEBUG - Taking top 8 variants by coverage in window 9:61400218-61400219
2012-10-07 17:35:20,953 - DEBUG - Taking top 8 variants by coverage in window 9:61403031-61403036
2012-10-07 17:35:21,768 - DEBUG - Taking top 8 variants by coverage in window 9:61414918-61414924
2012-10-07 17:35:22,522 - DEBUG - Taking top 8 variants by coverage in window 9:61416752-61416762
2012-10-07 17:35:23,149 - DEBUG - Taking top 8 variants by coverage in window 9:61416852-61416860
2012-10-07 17:35:24,148 - DEBUG - Taking top 8 variants by coverage in window 9:61422844-61422845
2012-10-07 17:35:24,704 - DEBUG - Taking top 8 variants by coverage in window 9:61430187-61430188
2012-10-07 17:35:25,975 - DEBUG - Taking top 8 variants by coverage in window 9:61448677-61448690
2012-10-07 17:35:26,104 - DEBUG - Taking top 8 variants by coverage in window 9:61450107-61450108
2012-10-07 17:35:26,190 - DEBUG - Taking top 8 variants by coverage in window 9:61450368-61450372
2012-10-07 17:35:26,377 - DEBUG - Taking top 8 variants by coverage in window 9:61451684-61451685
2012-10-07 17:35:26,736 - DEBUG - Taking top 8 variants by coverage in window 9:61455916-61455919
2012-10-07 17:35:27,375 - DEBUG - Taking top 8 variants by coverage in window 9:61462206-61462207
2012-10-07 17:35:27,406 - DEBUG - Taking top 8 variants by coverage in window 9:61462210-61462214
2012-10-07 17:35:28,038 - DEBUG - Taking top 8 variants by coverage in window 9:61467368-61467369
2012-10-07 17:35:28,426 - DEBUG - Taking top 8 variants by coverage in window 9:61471403-61471404
2012-10-07 17:35:28,474 - DEBUG - Taking top 8 variants by coverage in window 9:61471596-61471597
2012-10-07 17:35:28,611 - DEBUG - Taking top 8 variants by coverage in window 9:61472586-61472587
2012-10-07 17:35:28,796 - DEBUG - Taking top 8 variants by coverage in window 9:61472746-61472748
2012-10-07 17:35:29,158 - DEBUG - Taking top 8 variants by coverage in window 9:61475550-61475572
2012-10-07 17:35:29,743 - DEBUG - Taking top 8 variants by coverage in window 9:61483700-61483701
2012-10-07 17:35:30,456 - DEBUG - Taking top 8 variants by coverage in window 9:61491247-61491248
2012-10-07 17:35:30,850 - DEBUG - Taking top 8 variants by coverage in window 9:61496204-61496205
2012-10-07 17:35:31,396 - DEBUG - Taking top 8 variants by coverage in window 9:61502173-61502176
2012-10-07 17:35:31,963 - DEBUG - Taking top 8 variants by coverage in window 9:61507174-61507175
2012-10-07 17:35:32,188 - DEBUG - Taking top 8 variants by coverage in window 9:61509260-61509261
2012-10-07 17:35:32,202 - DEBUG - Taking top 8 variants by coverage in window 9:61509355-61509356
2012-10-07 17:35:32,487 - DEBUG - Taking top 8 variants by coverage in window 9:61511706-61511707
2012-10-07 17:35:33,421 - DEBUG - Taking top 8 variants by coverage in window 9:61514397-61514400
2012-10-07 17:35:33,969 - DEBUG - Taking top 8 variants by coverage in window 9:61519673-61519674
2012-10-07 17:35:34,546 - DEBUG - Taking top 8 variants by coverage in window 9:61527534-61527535
2012-10-07 17:35:34,605 - DEBUG - Taking top 8 variants by coverage in window 9:61528225-61528226
2012-10-07 17:35:34,867 - DEBUG - Taking top 8 variants by coverage in window 9:61529953-61529954
2012-10-07 17:35:35,083 - DEBUG - Taking top 8 variants by coverage in window 9:61532891-61532892
2012-10-07 17:35:35,270 - DEBUG - Taking top 8 variants by coverage in window 9:61534565-61534567
2012-10-07 17:35:35,464 - DEBUG - Taking top 8 variants by coverage in window 9:61536298-61536299
2012-10-07 17:35:35,896 - DEBUG - Taking top 8 variants by coverage in window 9:61539946-61539947
2012-10-07 17:35:35,967 - DEBUG - Taking top 8 variants by coverage in window 9:61540484-61540485
2012-10-07 17:35:36,092 - DEBUG - Taking top 8 variants by coverage in window 9:61541830-61541831
2012-10-07 17:35:36,176 - DEBUG - Taking top 8 variants by coverage in window 9:61544184-61544185
2012-10-07 17:35:36,274 - DEBUG - Taking top 8 variants by coverage in window 9:61546201-61546202
2012-10-07 17:35:37,546 - DEBUG - Taking top 8 variants by coverage in window 9:61564562-61564563
2012-10-07 17:35:37,881 - DEBUG - Taking top 8 variants by coverage in window 9:61571413-61571414
2012-10-07 17:35:37,901 - DEBUG - Taking top 8 variants by coverage in window 9:61571419-61571420
2012-10-07 17:35:37,999 - DEBUG - Taking top 8 variants by coverage in window 9:61571822-61571835
2012-10-07 17:35:38,029 - DEBUG - Taking top 8 variants by coverage in window 9:61571925-61571935
2012-10-07 17:35:38,240 - DEBUG - Taking top 8 variants by coverage in window 9:61574374-61574382
2012-10-07 17:35:39,511 - DEBUG - Taking top 8 variants by coverage in window 9:61586201-61586202
2012-10-07 17:35:39,697 - DEBUG - Taking top 8 variants by coverage in window 9:61588640-61588642
2012-10-07 17:35:39,710 - DEBUG - Taking top 8 variants by coverage in window 9:61588661-61588662
2012-10-07 17:35:40,344 - DEBUG - Taking top 8 variants by coverage in window 9:61592796-61592797
2012-10-07 17:35:40,535 - DEBUG - Taking top 8 variants by coverage in window 9:61596695-61596704
2012-10-07 17:35:40,622 - DEBUG - Taking top 8 variants by coverage in window 9:61596725-61596726
2012-10-07 17:35:40,964 - DEBUG - Taking top 8 variants by coverage in window 9:61600162-61600178
2012-10-07 17:35:41,148 - DEBUG - Taking top 8 variants by coverage in window 9:61601161-61601162
2012-10-07 17:35:41,168 - DEBUG - Taking top 8 variants by coverage in window 9:61601186-61601187
2012-10-07 17:35:41,481 - DEBUG - Taking top 8 variants by coverage in window 9:61603025-61603026
2012-10-07 17:35:41,506 - DEBUG - Taking top 8 variants by coverage in window 9:61603026-61603029
2012-10-07 17:35:41,685 - DEBUG - Taking top 8 variants by coverage in window 9:61603100-61603101
2012-10-07 17:35:41,873 - DEBUG - Taking top 8 variants by coverage in window 9:61606759-61606760
2012-10-07 17:35:41,914 - DEBUG - Taking top 8 variants by coverage in window 9:61606784-61606785
2012-10-07 17:35:42,145 - DEBUG - Taking top 8 variants by coverage in window 9:61609782-61609783
2012-10-07 17:35:42,338 - DEBUG - Taking top 8 variants by coverage in window 9:61612449-61612450
2012-10-07 17:35:42,588 - DEBUG - Taking top 8 variants by coverage in window 9:61614809-61614810
2012-10-07 17:35:43,112 - DEBUG - Taking top 8 variants by coverage in window 9:61616326-61616327
2012-10-07 17:35:43,407 - DEBUG - Taking top 8 variants by coverage in window 9:61619331-61619332
2012-10-07 17:35:43,442 - DEBUG - Taking top 8 variants by coverage in window 9:61619355-61619356
2012-10-07 17:35:43,515 - DEBUG - Taking top 8 variants by coverage in window 9:61619840-61619841
2012-10-07 17:35:43,548 - DEBUG - Taking top 8 variants by coverage in window 9:61619843-61619844
2012-10-07 17:35:43,619 - DEBUG - Taking top 8 variants by coverage in window 9:61620374-61620379
2012-10-07 17:35:43,661 - DEBUG - Taking top 8 variants by coverage in window 9:61620465-61620478
2012-10-07 17:35:44,288 - DEBUG - Taking top 8 variants by coverage in window 9:61633886-61633889
2012-10-07 17:35:44,442 - DEBUG - Taking top 8 variants by coverage in window 9:61634526-61634531
2012-10-07 17:35:44,482 - DEBUG - Taking top 8 variants by coverage in window 9:61634546-61634547
2012-10-07 17:35:44,557 - DEBUG - Taking top 8 variants by coverage in window 9:61634592-61634593
2012-10-07 17:35:45,438 - DEBUG - Taking top 8 variants by coverage in window 9:61645008-61645009
2012-10-07 17:35:45,981 - DEBUG - Taking top 8 variants by coverage in window 9:61652034-61652035
2012-10-07 17:35:46,160 - DEBUG - Taking top 8 variants by coverage in window 9:61653536-61653537
2012-10-07 17:35:46,706 - DEBUG - Taking top 8 variants by coverage in window 9:61660024-61660025
2012-10-07 17:35:47,621 - DEBUG - Taking top 8 variants by coverage in window 9:61669271-61669273
2012-10-07 17:35:47,787 - DEBUG - Taking top 8 variants by coverage in window 9:61671228-61671229
2012-10-07 17:35:47,813 - DEBUG - Taking top 8 variants by coverage in window 9:61671240-61671241
2012-10-07 17:35:47,990 - DEBUG - Taking top 8 variants by coverage in window 9:61673472-61673473
2012-10-07 17:35:48,056 - DEBUG - Taking top 8 variants by coverage in window 9:61673484-61673485
2012-10-07 17:35:48,284 - DEBUG - Taking top 8 variants by coverage in window 9:61673575-61673579
2012-10-07 17:35:48,909 - DEBUG - Taking top 8 variants by coverage in window 9:61681560-61681566
2012-10-07 17:35:48,944 - DEBUG - Taking top 8 variants by coverage in window 9:61681575-61681576
2012-10-07 17:35:48,960 - DEBUG - Taking top 8 variants by coverage in window 9:61681576-61681577
2012-10-07 17:35:48,992 - DEBUG - Taking top 8 variants by coverage in window 9:61681582-61681583
2012-10-07 17:35:49,249 - DEBUG - Taking top 8 variants by coverage in window 9:61684505-61684506
2012-10-07 17:35:49,282 - DEBUG - Taking top 8 variants by coverage in window 9:61684535-61684538
2012-10-07 17:35:49,302 - DEBUG - Taking top 8 variants by coverage in window 9:61684539-61684540
2012-10-07 17:35:49,338 - DEBUG - Taking top 8 variants by coverage in window 9:61684554-61684555
2012-10-07 17:35:49,375 - DEBUG - Taking top 8 variants by coverage in window 9:61684735-61684736
2012-10-07 17:35:49,464 - DEBUG - Taking top 8 variants by coverage in window 9:61686228-61686229
2012-10-07 17:35:49,613 - DEBUG - Taking top 8 variants by coverage in window 9:61688649-61688650
2012-10-07 17:35:49,900 - DEBUG - Taking top 8 variants by coverage in window 9:61692139-61692140
2012-10-07 17:35:50,860 - DEBUG - Taking top 8 variants by coverage in window 9:61705767-61705768
2012-10-07 17:35:51,062 - DEBUG - Taking top 8 variants by coverage in window 9:61709479-61709480
2012-10-07 17:35:51,615 - DEBUG - Taking top 8 variants by coverage in window 9:61718837-61718838
2012-10-07 17:35:51,803 - DEBUG - Taking top 8 variants by coverage in window 9:61721912-61721916
2012-10-07 17:35:52,142 - DEBUG - Taking top 8 variants by coverage in window 9:61721998-61722018
2012-10-07 17:35:52,625 - DEBUG - Taking top 8 variants by coverage in window 9:61728176-61728178
2012-10-07 17:35:52,851 - DEBUG - Taking top 8 variants by coverage in window 9:61731344-61731345
2012-10-07 17:35:53,720 - DEBUG - Taking top 8 variants by coverage in window 9:61738621-61738622
2012-10-07 17:35:53,849 - DEBUG - Taking top 8 variants by coverage in window 9:61739075-61739076
2012-10-07 17:35:54,036 - DEBUG - Taking top 8 variants by coverage in window 9:61740506-61740507
2012-10-07 17:35:54,316 - DEBUG - Taking top 8 variants by coverage in window 9:61743253-61743254
2012-10-07 17:35:54,617 - DEBUG - Taking top 8 variants by coverage in window 9:61744819-61744820
2012-10-07 17:35:54,658 - DEBUG - Taking top 8 variants by coverage in window 9:61744823-61744824
2012-10-07 17:35:55,828 - DEBUG - Taking top 8 variants by coverage in window 9:61758663-61758665
2012-10-07 17:35:55,868 - DEBUG - Taking top 8 variants by coverage in window 9:61758699-61758700
2012-10-07 17:35:55,905 - DEBUG - Taking top 8 variants by coverage in window 9:61758875-61758876
2012-10-07 17:35:55,965 - DEBUG - Taking top 8 variants by coverage in window 9:61759390-61759391
2012-10-07 17:35:56,107 - DEBUG - Taking top 8 variants by coverage in window 9:61759844-61759845
2012-10-07 17:35:56,130 - DEBUG - Taking top 8 variants by coverage in window 9:61759868-61759869
2012-10-07 17:35:56,160 - DEBUG - Taking top 8 variants by coverage in window 9:61759888-61759889
2012-10-07 17:35:57,496 - DEBUG - Taking top 8 variants by coverage in window 9:61780339-61780340
2012-10-07 17:35:57,815 - DEBUG - Taking top 8 variants by coverage in window 9:61785510-61785511
2012-10-07 17:35:58,663 - DEBUG - Taking top 8 variants by coverage in window 9:61797157-61797158
2012-10-07 17:35:59,299 - DEBUG - Taking top 8 variants by coverage in window 9:61805265-61805266
2012-10-07 17:35:59,416 - DEBUG - Taking top 8 variants by coverage in window 9:61805392-61805393
2012-10-07 17:36:00,102 - DEBUG - Taking top 8 variants by coverage in window 9:61812797-61812798
2012-10-07 17:36:00,144 - DEBUG - Taking top 8 variants by coverage in window 9:61813534-61813535
2012-10-07 17:36:00,247 - DEBUG - Taking top 8 variants by coverage in window 9:61814931-61814934
2012-10-07 17:36:00,682 - DEBUG - Taking top 8 variants by coverage in window 9:61819627-61819628
2012-10-07 17:36:00,844 - DEBUG - Taking top 8 variants by coverage in window 9:61822639-61822640
2012-10-07 17:36:00,904 - DEBUG - Taking top 8 variants by coverage in window 9:61822823-61822824
2012-10-07 17:36:01,035 - DEBUG - Taking top 8 variants by coverage in window 9:61825808-61825809
2012-10-07 17:36:01,191 - DEBUG - Taking top 8 variants by coverage in window 9:61828033-61828034
2012-10-07 17:36:01,685 - DEBUG - Taking top 8 variants by coverage in window 9:61833972-61833973
2012-10-07 17:36:01,824 - DEBUG - Taking top 8 variants by coverage in window 9:61834961-61834962
2012-10-07 17:36:02,241 - DEBUG - Taking top 8 variants by coverage in window 9:61838534-61838535
2012-10-07 17:36:02,300 - DEBUG - Taking top 8 variants by coverage in window 9:61838936-61838937
2012-10-07 17:36:02,477 - DEBUG - Taking top 8 variants by coverage in window 9:61841336-61841337
2012-10-07 17:36:02,903 - DEBUG - Taking top 8 variants by coverage in window 9:61842750-61842751
2012-10-07 17:36:03,223 - DEBUG - Taking top 8 variants by coverage in window 9:61846734-61846735
2012-10-07 17:36:03,516 - DEBUG - Taking top 8 variants by coverage in window 9:61849715-61849716
2012-10-07 17:36:03,758 - DEBUG - Taking top 8 variants by coverage in window 9:61851678-61851679
2012-10-07 17:36:03,856 - DEBUG - Taking top 8 variants by coverage in window 9:61852655-61852656
2012-10-07 17:36:03,882 - DEBUG - Taking top 8 variants by coverage in window 9:61852677-61852678
2012-10-07 17:36:04,060 - DEBUG - Taking top 8 variants by coverage in window 9:61854643-61854644
2012-10-07 17:36:04,203 - DEBUG - Taking top 8 variants by coverage in window 9:61856165-61856166
2012-10-07 17:36:04,279 - DEBUG - Taking top 8 variants by coverage in window 9:61857001-61857002
2012-10-07 17:36:04,400 - DEBUG - Taking top 8 variants by coverage in window 9:61857910-61857914
2012-10-07 17:36:04,425 - DEBUG - Taking top 8 variants by coverage in window 9:61857915-61857916
2012-10-07 17:36:04,559 - DEBUG - Taking top 8 variants by coverage in window 9:61858621-61858622
2012-10-07 17:36:05,708 - DEBUG - Taking top 8 variants by coverage in window 9:61870663-61870664
2012-10-07 17:36:05,763 - DEBUG - Taking top 8 variants by coverage in window 9:61871161-61871162
2012-10-07 17:36:05,852 - DEBUG - Taking top 8 variants by coverage in window 9:61871925-61871932
2012-10-07 17:36:06,038 - DEBUG - Taking top 8 variants by coverage in window 9:61875484-61875485
2012-10-07 17:36:06,645 - DEBUG - Taking top 8 variants by coverage in window 9:61880628-61880629
2012-10-07 17:36:07,566 - DEBUG - Taking top 8 variants by coverage in window 9:61890949-61890950
2012-10-07 17:36:07,694 - DEBUG - Taking top 8 variants by coverage in window 9:61891658-61891659
2012-10-07 17:36:07,826 - DEBUG - Taking top 8 variants by coverage in window 9:61892067-61892068
2012-10-07 17:36:07,858 - DEBUG - Taking top 8 variants by coverage in window 9:61892072-61892073
2012-10-07 17:36:07,964 - DEBUG - Taking top 8 variants by coverage in window 9:61892103-61892104
2012-10-07 17:36:08,651 - DEBUG - Taking top 8 variants by coverage in window 9:61895305-61895308
2012-10-07 17:36:08,714 - DEBUG - Taking top 8 variants by coverage in window 9:61895341-61895342
2012-10-07 17:36:09,482 - DEBUG - Taking top 8 variants by coverage in window 9:61898720-61898721
2012-10-07 17:36:09,813 - DEBUG - Taking top 8 variants by coverage in window 9:61900939-61900942
2012-10-07 17:36:10,213 - DEBUG - Taking top 8 variants by coverage in window 9:61915786-61915787
2012-10-07 17:36:10,851 - DEBUG - Taking top 8 variants by coverage in window 9:61927952-61927953
2012-10-07 17:36:11,482 - DEBUG - Taking top 8 variants by coverage in window 9:61941243-61941244
2012-10-07 17:36:12,340 - DEBUG - Taking top 8 variants by coverage in window 9:61968457-61968467
2012-10-07 17:36:12,360 - DEBUG - Taking top 8 variants by coverage in window 9:61968479-61968480
2012-10-07 17:36:13,755 - DEBUG - Taking top 8 variants by coverage in window 9:61995373-61995377
2012-10-07 17:36:15,347 - DEBUG - Read 101573 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 17:36:15,615 - DEBUG - Read 111735 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 17:36:15,897 - DEBUG - Read 126236 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 17:36:16,219 - DEBUG - Read 129829 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 17:36:16,522 - DEBUG - Read 119463 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 17:36:16,791 - DEBUG - Read 115360 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 17:36:17,076 - DEBUG - Read 121755 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 17:36:17,356 - DEBUG - Read 113147 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 17:36:17,614 - DEBUG - Read 107293 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 17:36:17,875 - DEBUG - Read 104306 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 17:36:18,159 - DEBUG - Read 118371 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 17:36:18,426 - DEBUG - Read 108602 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 17:36:18,692 - DEBUG - Read 109841 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 17:36:18,960 - DEBUG - Read 120775 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 17:36:19,254 - DEBUG - Read 129611 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 17:36:19,502 - DEBUG - Read 100080 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 17:36:19,776 - DEBUG - Read 123631 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 17:36:20,057 - DEBUG - Read 115915 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 17:36:20,304 - DEBUG - Read 106914 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 17:36:20,563 - DEBUG - Read 101718 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 17:36:20,668 - DEBUG - Detected 22415 variants in 101573 reads
2012-10-07 17:36:20,842 - DEBUG - Detected 34242 variants in 111735 reads
2012-10-07 17:36:21,084 - DEBUG - Detected 45601 variants in 126236 reads
2012-10-07 17:36:21,363 - DEBUG - Detected 54921 variants in 129829 reads
2012-10-07 17:36:21,677 - DEBUG - Detected 63069 variants in 119463 reads
2012-10-07 17:36:22,023 - DEBUG - Detected 69969 variants in 115360 reads
2012-10-07 17:36:22,420 - DEBUG - Detected 84084 variants in 121755 reads
2012-10-07 17:36:22,915 - DEBUG - Detected 90179 variants in 113147 reads
2012-10-07 17:36:23,391 - DEBUG - Detected 96916 variants in 107293 reads
2012-10-07 17:36:23,893 - DEBUG - Detected 102376 variants in 104306 reads
2012-10-07 17:36:24,431 - DEBUG - Detected 107990 variants in 118371 reads
2012-10-07 17:36:24,987 - DEBUG - Detected 112451 variants in 108602 reads
2012-10-07 17:36:25,566 - DEBUG - Detected 117363 variants in 109841 reads
2012-10-07 17:36:26,236 - DEBUG - Detected 122603 variants in 120775 reads
2012-10-07 17:36:26,882 - DEBUG - Detected 130582 variants in 129611 reads
2012-10-07 17:36:27,540 - DEBUG - Detected 135090 variants in 100080 reads
2012-10-07 17:36:28,249 - DEBUG - Detected 140404 variants in 123631 reads
2012-10-07 17:36:29,029 - DEBUG - Detected 144733 variants in 115915 reads
2012-10-07 17:36:29,763 - DEBUG - Detected 149821 variants in 106914 reads
2012-10-07 17:36:30,515 - DEBUG - Detected 154604 variants in 101718 reads
2012-10-07 17:36:31,769 - DEBUG - Taking top 8 variants by coverage in window 9:62001729-62001730
2012-10-07 17:36:31,858 - DEBUG - Taking top 8 variants by coverage in window 9:62002252-62002253
2012-10-07 17:36:31,894 - DEBUG - Taking top 8 variants by coverage in window 9:62002273-62002274
2012-10-07 17:36:31,971 - DEBUG - Taking top 8 variants by coverage in window 9:62003164-62003165
2012-10-07 17:36:32,200 - DEBUG - Taking top 8 variants by coverage in window 9:62005878-62005879
2012-10-07 17:36:32,330 - DEBUG - Taking top 8 variants by coverage in window 9:62006969-62006970
2012-10-07 17:36:32,349 - DEBUG - Taking top 8 variants by coverage in window 9:62006996-62006997
2012-10-07 17:36:33,095 - DEBUG - Taking top 8 variants by coverage in window 9:62014933-62014934
2012-10-07 17:36:33,141 - DEBUG - Taking top 8 variants by coverage in window 9:62014942-62014943
2012-10-07 17:36:33,169 - DEBUG - Taking top 8 variants by coverage in window 9:62014956-62014957
2012-10-07 17:36:33,476 - DEBUG - Taking top 8 variants by coverage in window 9:62017869-62017878
2012-10-07 17:36:33,621 - DEBUG - Taking top 8 variants by coverage in window 9:62019364-62019365
2012-10-07 17:36:33,751 - DEBUG - Taking top 8 variants by coverage in window 9:62021074-62021075
2012-10-07 17:36:33,835 - DEBUG - Taking top 8 variants by coverage in window 9:62021188-62021189
2012-10-07 17:36:35,065 - DEBUG - Taking top 8 variants by coverage in window 9:62034010-62034011
2012-10-07 17:36:35,167 - DEBUG - Taking top 8 variants by coverage in window 9:62035166-62035170
2012-10-07 17:36:35,977 - DEBUG - Taking top 8 variants by coverage in window 9:62042562-62042564
2012-10-07 17:36:36,008 - DEBUG - Taking top 8 variants by coverage in window 9:62042734-62042735
2012-10-07 17:36:36,246 - DEBUG - Taking top 8 variants by coverage in window 9:62044871-62044872
2012-10-07 17:36:36,646 - DEBUG - Taking top 8 variants by coverage in window 9:62047793-62047794
2012-10-07 17:36:36,759 - DEBUG - Taking top 8 variants by coverage in window 9:62048975-62048977
2012-10-07 17:36:37,031 - DEBUG - Taking top 8 variants by coverage in window 9:62050047-62050049
2012-10-07 17:36:37,228 - DEBUG - Taking top 8 variants by coverage in window 9:62051400-62051401
2012-10-07 17:36:37,613 - DEBUG - Taking top 8 variants by coverage in window 9:62056153-62056157
2012-10-07 17:36:38,097 - DEBUG - Taking top 8 variants by coverage in window 9:62057213-62057214
2012-10-07 17:36:38,615 - DEBUG - Taking top 8 variants by coverage in window 9:62062067-62062068
2012-10-07 17:36:38,844 - DEBUG - Taking top 8 variants by coverage in window 9:62065633-62065634
2012-10-07 17:36:39,120 - DEBUG - Taking top 8 variants by coverage in window 9:62069492-62069495
2012-10-07 17:36:39,924 - DEBUG - Taking top 8 variants by coverage in window 9:62078851-62078852
2012-10-07 17:36:40,802 - DEBUG - Taking top 8 variants by coverage in window 9:62091577-62091578
2012-10-07 17:36:41,266 - DEBUG - Taking top 8 variants by coverage in window 9:62095197-62095205
2012-10-07 17:36:41,353 - DEBUG - Taking top 8 variants by coverage in window 9:62095220-62095221
2012-10-07 17:36:41,656 - DEBUG - Taking top 8 variants by coverage in window 9:62100277-62100278
2012-10-07 17:36:41,833 - DEBUG - Taking top 8 variants by coverage in window 9:62102555-62102556
2012-10-07 17:36:41,942 - DEBUG - Taking top 8 variants by coverage in window 9:62103186-62103187
2012-10-07 17:36:41,957 - DEBUG - Taking top 8 variants by coverage in window 9:62103189-62103190
2012-10-07 17:36:42,339 - DEBUG - Taking top 8 variants by coverage in window 9:62107173-62107174
2012-10-07 17:36:42,519 - DEBUG - Taking top 8 variants by coverage in window 9:62109487-62109488
2012-10-07 17:36:42,937 - DEBUG - Taking top 8 variants by coverage in window 9:62113123-62113131
2012-10-07 17:36:43,608 - DEBUG - Taking top 8 variants by coverage in window 9:62119146-62119147
2012-10-07 17:36:44,038 - DEBUG - Taking top 8 variants by coverage in window 9:62125617-62125618
2012-10-07 17:36:44,051 - DEBUG - Taking top 8 variants by coverage in window 9:62125618-62125619
2012-10-07 17:36:44,830 - DEBUG - Taking top 8 variants by coverage in window 9:62135995-62135996
2012-10-07 17:36:44,941 - DEBUG - Taking top 8 variants by coverage in window 9:62136831-62136835
2012-10-07 17:36:45,217 - DEBUG - Taking top 8 variants by coverage in window 9:62140866-62140867
2012-10-07 17:36:45,558 - DEBUG - Taking top 8 variants by coverage in window 9:62144064-62144068
2012-10-07 17:36:45,808 - DEBUG - Taking top 8 variants by coverage in window 9:62146954-62146955
2012-10-07 17:36:46,363 - DEBUG - Taking top 8 variants by coverage in window 9:62156321-62156322
2012-10-07 17:36:46,402 - DEBUG - Taking top 8 variants by coverage in window 9:62157433-62157435
2012-10-07 17:36:47,244 - DEBUG - Taking top 8 variants by coverage in window 9:62168017-62168024
2012-10-07 17:36:47,661 - DEBUG - Taking top 8 variants by coverage in window 9:62173274-62173275
2012-10-07 17:36:47,676 - DEBUG - Taking top 8 variants by coverage in window 9:62173277-62173278
2012-10-07 17:36:47,788 - DEBUG - Taking top 8 variants by coverage in window 9:62174403-62174419
2012-10-07 17:36:48,260 - DEBUG - Taking top 8 variants by coverage in window 9:62178946-62178947
2012-10-07 17:36:48,380 - DEBUG - Taking top 8 variants by coverage in window 9:62180946-62180947
2012-10-07 17:36:48,405 - DEBUG - Taking top 8 variants by coverage in window 9:62181130-62181131
2012-10-07 17:36:51,220 - DEBUG - Taking top 8 variants by coverage in window 9:62231544-62231545
2012-10-07 17:36:51,578 - DEBUG - Taking top 8 variants by coverage in window 9:62234614-62234618
2012-10-07 17:36:51,644 - DEBUG - Taking top 8 variants by coverage in window 9:62234640-62234641
2012-10-07 17:36:51,925 - DEBUG - Taking top 8 variants by coverage in window 9:62237485-62237486
2012-10-07 17:36:52,410 - DEBUG - Taking top 8 variants by coverage in window 9:62240952-62240958
2012-10-07 17:36:52,513 - DEBUG - Taking top 8 variants by coverage in window 9:62241439-62241440
2012-10-07 17:36:53,076 - DEBUG - Taking top 8 variants by coverage in window 9:62246258-62246259
2012-10-07 17:36:53,088 - DEBUG - Taking top 8 variants by coverage in window 9:62246262-62246263
2012-10-07 17:36:53,508 - DEBUG - Taking top 8 variants by coverage in window 9:62251014-62251015
2012-10-07 17:36:54,553 - DEBUG - Taking top 8 variants by coverage in window 9:62261740-62261742
2012-10-07 17:36:56,037 - DEBUG - Taking top 8 variants by coverage in window 9:62280473-62280474
2012-10-07 17:36:56,066 - DEBUG - Taking top 8 variants by coverage in window 9:62280500-62280501
2012-10-07 17:36:56,099 - DEBUG - Taking top 8 variants by coverage in window 9:62281302-62281313
2012-10-07 17:36:56,220 - DEBUG - Taking top 8 variants by coverage in window 9:62282723-62282733
2012-10-07 17:36:56,295 - DEBUG - Taking top 8 variants by coverage in window 9:62283008-62283022
2012-10-07 17:36:56,335 - DEBUG - Taking top 8 variants by coverage in window 9:62283047-62283048
2012-10-07 17:36:56,707 - DEBUG - Taking top 8 variants by coverage in window 9:62286979-62286980
2012-10-07 17:36:56,831 - DEBUG - Taking top 8 variants by coverage in window 9:62295717-62295722
2012-10-07 17:36:56,879 - DEBUG - Taking top 8 variants by coverage in window 9:62295738-62295739
2012-10-07 17:36:57,204 - DEBUG - Taking top 8 variants by coverage in window 9:62297323-62297324
2012-10-07 17:36:57,475 - DEBUG - Taking top 8 variants by coverage in window 9:62301149-62301150
2012-10-07 17:36:57,968 - DEBUG - Taking top 8 variants by coverage in window 9:62307533-62307534
2012-10-07 17:36:58,416 - DEBUG - Taking top 8 variants by coverage in window 9:62311974-62311975
2012-10-07 17:36:58,585 - DEBUG - Taking top 8 variants by coverage in window 9:62312453-62312454
2012-10-07 17:36:58,724 - DEBUG - Taking top 8 variants by coverage in window 9:62314413-62314414
2012-10-07 17:36:58,745 - DEBUG - Taking top 8 variants by coverage in window 9:62314448-62314450
2012-10-07 17:36:58,949 - DEBUG - Taking top 8 variants by coverage in window 9:62316099-62316100
2012-10-07 17:36:59,479 - DEBUG - Taking top 8 variants by coverage in window 9:62320815-62320816
2012-10-07 17:36:59,739 - DEBUG - Taking top 8 variants by coverage in window 9:62322123-62322124
2012-10-07 17:37:00,364 - DEBUG - Taking top 8 variants by coverage in window 9:62328853-62328857
2012-10-07 17:37:00,999 - DEBUG - Taking top 8 variants by coverage in window 9:62335927-62335933
2012-10-07 17:37:01,018 - DEBUG - Taking top 8 variants by coverage in window 9:62335946-62335956
2012-10-07 17:37:01,156 - DEBUG - Taking top 8 variants by coverage in window 9:62336249-62336250
2012-10-07 17:37:01,536 - DEBUG - Taking top 8 variants by coverage in window 9:62339914-62339916
2012-10-07 17:37:01,767 - DEBUG - Taking top 8 variants by coverage in window 9:62341585-62341586
2012-10-07 17:37:01,878 - DEBUG - Taking top 8 variants by coverage in window 9:62341717-62341718
2012-10-07 17:37:02,566 - DEBUG - Taking top 8 variants by coverage in window 9:62344428-62344429
2012-10-07 17:37:03,342 - DEBUG - Taking top 8 variants by coverage in window 9:62349975-62349976
2012-10-07 17:37:03,393 - DEBUG - Taking top 8 variants by coverage in window 9:62349997-62349998
2012-10-07 17:37:03,622 - DEBUG - Taking top 8 variants by coverage in window 9:62352384-62352390
2012-10-07 17:37:03,779 - DEBUG - Taking top 8 variants by coverage in window 9:62354309-62354310
2012-10-07 17:37:04,124 - DEBUG - Taking top 8 variants by coverage in window 9:62359214-62359215
2012-10-07 17:37:04,168 - DEBUG - Taking top 8 variants by coverage in window 9:62359218-62359219
2012-10-07 17:37:04,463 - DEBUG - Taking top 8 variants by coverage in window 9:62361181-62361182
2012-10-07 17:37:04,747 - DEBUG - Taking top 8 variants by coverage in window 9:62364169-62364174
2012-10-07 17:37:04,817 - DEBUG - Taking top 8 variants by coverage in window 9:62364177-62364178
2012-10-07 17:37:04,914 - DEBUG - Taking top 8 variants by coverage in window 9:62364303-62364311
2012-10-07 17:37:05,012 - DEBUG - Taking top 8 variants by coverage in window 9:62364857-62364858
2012-10-07 17:37:05,098 - DEBUG - Taking top 8 variants by coverage in window 9:62365519-62365520
2012-10-07 17:37:05,449 - DEBUG - Taking top 8 variants by coverage in window 9:62368747-62368750
2012-10-07 17:37:06,762 - DEBUG - Taking top 8 variants by coverage in window 9:62380533-62380563
2012-10-07 17:37:07,736 - DEBUG - Taking top 8 variants by coverage in window 9:62393216-62393217
2012-10-07 17:37:08,221 - DEBUG - Taking top 8 variants by coverage in window 9:62394876-62394887
2012-10-07 17:37:08,652 - DEBUG - Taking top 8 variants by coverage in window 9:62394942-62394943
2012-10-07 17:37:09,005 - DEBUG - Taking top 8 variants by coverage in window 9:62395055-62395057
2012-10-07 17:37:09,122 - DEBUG - Taking top 8 variants by coverage in window 9:62395071-62395073
2012-10-07 17:37:09,324 - DEBUG - Taking top 8 variants by coverage in window 9:62395089-62395097
2012-10-07 17:37:11,587 - DEBUG - Taking top 8 variants by coverage in window 9:62399970-62399973
2012-10-07 17:37:11,924 - DEBUG - Taking top 8 variants by coverage in window 9:62404587-62404588
2012-10-07 17:37:11,959 - DEBUG - Taking top 8 variants by coverage in window 9:62404603-62404604
2012-10-07 17:37:12,125 - DEBUG - Taking top 8 variants by coverage in window 9:62404881-62404882
2012-10-07 17:37:12,608 - DEBUG - Taking top 8 variants by coverage in window 9:62410723-62410724
2012-10-07 17:37:12,853 - DEBUG - Taking top 8 variants by coverage in window 9:62413700-62413701
2012-10-07 17:37:13,285 - DEBUG - Taking top 8 variants by coverage in window 9:62419473-62419474
2012-10-07 17:37:13,372 - DEBUG - Taking top 8 variants by coverage in window 9:62420499-62420500
2012-10-07 17:37:13,457 - DEBUG - Taking top 8 variants by coverage in window 9:62421694-62421695
2012-10-07 17:37:13,832 - DEBUG - Taking top 8 variants by coverage in window 9:62426236-62426237
2012-10-07 17:37:13,862 - DEBUG - Taking top 8 variants by coverage in window 9:62426249-62426250
2012-10-07 17:37:15,909 - DEBUG - Taking top 8 variants by coverage in window 9:62456941-62456942
2012-10-07 17:37:16,583 - DEBUG - Taking top 8 variants by coverage in window 9:62464429-62464430
2012-10-07 17:37:16,885 - DEBUG - Taking top 8 variants by coverage in window 9:62466926-62466927
2012-10-07 17:37:17,251 - DEBUG - Taking top 8 variants by coverage in window 9:62469454-62469455
2012-10-07 17:37:17,734 - DEBUG - Taking top 8 variants by coverage in window 9:62472901-62472902
2012-10-07 17:37:17,751 - DEBUG - Taking top 8 variants by coverage in window 9:62472924-62472925
2012-10-07 17:37:17,780 - DEBUG - Taking top 8 variants by coverage in window 9:62472970-62472972
2012-10-07 17:37:18,258 - DEBUG - Taking top 8 variants by coverage in window 9:62478104-62478105
2012-10-07 17:37:18,544 - DEBUG - Taking top 8 variants by coverage in window 9:62481816-62481817
2012-10-07 17:37:18,568 - DEBUG - Taking top 8 variants by coverage in window 9:62481977-62481991
2012-10-07 17:37:18,725 - DEBUG - Taking top 8 variants by coverage in window 9:62482525-62482526
2012-10-07 17:37:18,776 - DEBUG - Taking top 8 variants by coverage in window 9:62482681-62482682
2012-10-07 17:37:18,815 - DEBUG - Taking top 8 variants by coverage in window 9:62483076-62483077
2012-10-07 17:37:18,880 - DEBUG - Taking top 8 variants by coverage in window 9:62483424-62483426
2012-10-07 17:37:18,968 - DEBUG - Taking top 8 variants by coverage in window 9:62483927-62483928
2012-10-07 17:37:19,298 - DEBUG - Taking top 8 variants by coverage in window 9:62486610-62486612
2012-10-07 17:37:19,816 - DEBUG - Taking top 8 variants by coverage in window 9:62491912-62491915
2012-10-07 17:37:20,429 - DEBUG - Taking top 8 variants by coverage in window 9:62495237-62495241
2012-10-07 17:37:20,612 - DEBUG - Taking top 8 variants by coverage in window 9:62495302-62495307
2012-10-07 17:37:21,709 - DEBUG - Taking top 8 variants by coverage in window 9:62504579-62504580
2012-10-07 17:37:21,745 - DEBUG - Taking top 8 variants by coverage in window 9:62504588-62504600
2012-10-07 17:37:22,113 - DEBUG - Taking top 8 variants by coverage in window 9:62507150-62507151
2012-10-07 17:37:22,348 - DEBUG - Taking top 8 variants by coverage in window 9:62508258-62508262
2012-10-07 17:37:22,382 - DEBUG - Taking top 8 variants by coverage in window 9:62508319-62508332
2012-10-07 17:37:22,889 - DEBUG - Taking top 8 variants by coverage in window 9:62514569-62514580
2012-10-07 17:37:22,907 - DEBUG - Taking top 8 variants by coverage in window 9:62514606-62514607
2012-10-07 17:37:23,224 - DEBUG - Taking top 8 variants by coverage in window 9:62516707-62516708
2012-10-07 17:37:23,527 - DEBUG - Taking top 8 variants by coverage in window 9:62519476-62519480
2012-10-07 17:37:23,594 - DEBUG - Taking top 8 variants by coverage in window 9:62519837-62519838
2012-10-07 17:37:23,657 - DEBUG - Taking top 8 variants by coverage in window 9:62520377-62520378
2012-10-07 17:37:24,034 - DEBUG - Taking top 8 variants by coverage in window 9:62524995-62524996
2012-10-07 17:37:24,285 - DEBUG - Taking top 8 variants by coverage in window 9:62527736-62527737
2012-10-07 17:37:24,843 - DEBUG - Taking top 8 variants by coverage in window 9:62531260-62531261
2012-10-07 17:37:25,471 - DEBUG - Taking top 8 variants by coverage in window 9:62537023-62537026
2012-10-07 17:37:25,863 - DEBUG - Taking top 8 variants by coverage in window 9:62538397-62538398
2012-10-07 17:37:25,960 - DEBUG - Taking top 8 variants by coverage in window 9:62538720-62538722
2012-10-07 17:37:26,562 - DEBUG - Taking top 8 variants by coverage in window 9:62542978-62542979
2012-10-07 17:37:26,950 - DEBUG - Taking top 8 variants by coverage in window 9:62545768-62545776
2012-10-07 17:37:27,033 - DEBUG - Taking top 8 variants by coverage in window 9:62545811-62545812
2012-10-07 17:37:27,067 - DEBUG - Taking top 8 variants by coverage in window 9:62545813-62545816
2012-10-07 17:37:27,568 - DEBUG - Taking top 8 variants by coverage in window 9:62548739-62548740
2012-10-07 17:37:27,662 - DEBUG - Taking top 8 variants by coverage in window 9:62549149-62549150
2012-10-07 17:37:28,717 - DEBUG - Taking top 8 variants by coverage in window 9:62561663-62561664
2012-10-07 17:37:28,742 - DEBUG - Taking top 8 variants by coverage in window 9:62561749-62561751
2012-10-07 17:37:28,964 - DEBUG - Taking top 8 variants by coverage in window 9:62563927-62563932
2012-10-07 17:37:29,087 - DEBUG - Taking top 8 variants by coverage in window 9:62564195-62564196
2012-10-07 17:37:29,107 - DEBUG - Taking top 8 variants by coverage in window 9:62564207-62564208
2012-10-07 17:37:29,748 - DEBUG - Taking top 8 variants by coverage in window 9:62571262-62571268
2012-10-07 17:37:30,287 - DEBUG - Taking top 8 variants by coverage in window 9:62571508-62571512
2012-10-07 17:37:30,727 - DEBUG - Taking top 8 variants by coverage in window 9:62573568-62573575
2012-10-07 17:37:30,738 - DEBUG - Taking top 8 variants by coverage in window 9:62573590-62573591
2012-10-07 17:37:30,843 - DEBUG - Taking top 8 variants by coverage in window 9:62574048-62574049
2012-10-07 17:37:31,230 - DEBUG - Taking top 8 variants by coverage in window 9:62577705-62577706
2012-10-07 17:37:31,856 - DEBUG - Taking top 8 variants by coverage in window 9:62580752-62580753
2012-10-07 17:37:31,963 - DEBUG - Taking top 8 variants by coverage in window 9:62580793-62580794
2012-10-07 17:37:32,058 - DEBUG - Taking top 8 variants by coverage in window 9:62581147-62581148
2012-10-07 17:37:32,139 - DEBUG - Taking top 8 variants by coverage in window 9:62581378-62581382
2012-10-07 17:37:32,878 - DEBUG - Taking top 8 variants by coverage in window 9:62584038-62584042
2012-10-07 17:37:33,489 - DEBUG - Taking top 8 variants by coverage in window 9:62588136-62588137
2012-10-07 17:37:33,721 - DEBUG - Taking top 8 variants by coverage in window 9:62590715-62590727
2012-10-07 17:37:34,178 - DEBUG - Taking top 8 variants by coverage in window 9:62594325-62594326
2012-10-07 17:37:34,295 - DEBUG - Taking top 8 variants by coverage in window 9:62594397-62594398
2012-10-07 17:37:34,334 - DEBUG - Taking top 8 variants by coverage in window 9:62594403-62594404
2012-10-07 17:37:34,844 - DEBUG - Taking top 8 variants by coverage in window 9:62597894-62597895
2012-10-07 17:37:34,885 - DEBUG - Taking top 8 variants by coverage in window 9:62597999-62598000
2012-10-07 17:37:35,412 - DEBUG - Taking top 8 variants by coverage in window 9:62602374-62602375
2012-10-07 17:37:35,605 - DEBUG - Taking top 8 variants by coverage in window 9:62604561-62604562
2012-10-07 17:37:36,518 - DEBUG - Taking top 8 variants by coverage in window 9:62617657-62617660
2012-10-07 17:37:36,784 - DEBUG - Taking top 8 variants by coverage in window 9:62619876-62619882
2012-10-07 17:37:37,244 - DEBUG - Taking top 8 variants by coverage in window 9:62623507-62623519
2012-10-07 17:37:37,406 - DEBUG - Taking top 8 variants by coverage in window 9:62624970-62624971
2012-10-07 17:37:38,756 - DEBUG - Taking top 8 variants by coverage in window 9:62656037-62656040
2012-10-07 17:37:39,354 - DEBUG - Taking top 8 variants by coverage in window 9:62672266-62672267
2012-10-07 17:37:39,368 - DEBUG - Taking top 8 variants by coverage in window 9:62672277-62672279
2012-10-07 17:37:40,136 - DEBUG - Taking top 8 variants by coverage in window 9:62680729-62680737
2012-10-07 17:37:40,250 - DEBUG - Taking top 8 variants by coverage in window 9:62681677-62681678
2012-10-07 17:37:40,267 - DEBUG - Taking top 8 variants by coverage in window 9:62682024-62682026
2012-10-07 17:37:41,212 - DEBUG - Taking top 8 variants by coverage in window 9:62696363-62696364
2012-10-07 17:37:41,291 - DEBUG - Taking top 8 variants by coverage in window 9:62697247-62697248
2012-10-07 17:37:41,955 - DEBUG - Taking top 8 variants by coverage in window 9:62703821-62703822
2012-10-07 17:37:41,981 - DEBUG - Taking top 8 variants by coverage in window 9:62703824-62703825
2012-10-07 17:37:42,382 - DEBUG - Taking top 8 variants by coverage in window 9:62716075-62716076
2012-10-07 17:37:42,406 - DEBUG - Taking top 8 variants by coverage in window 9:62716103-62716104
2012-10-07 17:37:43,597 - DEBUG - Taking top 8 variants by coverage in window 9:62738201-62738202
2012-10-07 17:37:43,738 - DEBUG - Taking top 8 variants by coverage in window 9:62742667-62742670
2012-10-07 17:37:44,042 - DEBUG - Taking top 8 variants by coverage in window 9:62750190-62750191
2012-10-07 17:37:44,701 - DEBUG - Taking top 8 variants by coverage in window 9:62772380-62772381
2012-10-07 17:37:44,841 - DEBUG - Taking top 8 variants by coverage in window 9:62776390-62776391
2012-10-07 17:37:44,882 - DEBUG - Taking top 8 variants by coverage in window 9:62776585-62776586
2012-10-07 17:37:46,043 - DEBUG - Taking top 8 variants by coverage in window 9:62808958-62808963
2012-10-07 17:37:46,201 - DEBUG - Taking top 8 variants by coverage in window 9:62811156-62811171
2012-10-07 17:37:46,883 - DEBUG - Taking top 8 variants by coverage in window 9:62827085-62827086
2012-10-07 17:37:46,984 - DEBUG - Taking top 8 variants by coverage in window 9:62830456-62830457
2012-10-07 17:37:47,040 - DEBUG - Taking top 8 variants by coverage in window 9:62831820-62831824
2012-10-07 17:37:47,078 - DEBUG - Taking top 8 variants by coverage in window 9:62831848-62831849
2012-10-07 17:37:47,210 - DEBUG - Taking top 8 variants by coverage in window 9:62833846-62833847
2012-10-07 17:37:47,304 - DEBUG - Taking top 8 variants by coverage in window 9:62833876-62833878
2012-10-07 17:37:47,721 - DEBUG - Taking top 8 variants by coverage in window 9:62838788-62838789
2012-10-07 17:37:47,928 - DEBUG - Taking top 8 variants by coverage in window 9:62840979-62840980
2012-10-07 17:37:48,219 - DEBUG - Taking top 8 variants by coverage in window 9:62844465-62844466
2012-10-07 17:37:48,423 - DEBUG - Taking top 8 variants by coverage in window 9:62849843-62849844
2012-10-07 17:37:48,465 - DEBUG - Taking top 8 variants by coverage in window 9:62850050-62850054
2012-10-07 17:37:49,312 - DEBUG - Taking top 8 variants by coverage in window 9:62866132-62866135
2012-10-07 17:37:49,393 - DEBUG - Taking top 8 variants by coverage in window 9:62867053-62867054
2012-10-07 17:37:49,524 - DEBUG - Taking top 8 variants by coverage in window 9:62868288-62868289
2012-10-07 17:37:49,598 - DEBUG - Taking top 8 variants by coverage in window 9:62868961-62868962
2012-10-07 17:37:50,685 - DEBUG - Taking top 8 variants by coverage in window 9:62880558-62880559
2012-10-07 17:37:50,800 - DEBUG - Taking top 8 variants by coverage in window 9:62880572-62880573
2012-10-07 17:37:51,906 - DEBUG - Taking top 8 variants by coverage in window 9:62894152-62894153
2012-10-07 17:37:52,084 - DEBUG - Taking top 8 variants by coverage in window 9:62894389-62894390
2012-10-07 17:37:52,780 - DEBUG - Taking top 8 variants by coverage in window 9:62905003-62905004
2012-10-07 17:37:53,473 - DEBUG - Taking top 8 variants by coverage in window 9:62915376-62915379
2012-10-07 17:37:53,490 - DEBUG - Taking top 8 variants by coverage in window 9:62915405-62915406
2012-10-07 17:37:53,639 - DEBUG - Taking top 8 variants by coverage in window 9:62917498-62917512
2012-10-07 17:37:53,652 - DEBUG - Taking top 8 variants by coverage in window 9:62917514-62917515
2012-10-07 17:37:53,790 - DEBUG - Taking top 8 variants by coverage in window 9:62919944-62919945
2012-10-07 17:37:53,802 - DEBUG - Taking top 8 variants by coverage in window 9:62919945-62919946
2012-10-07 17:37:53,930 - DEBUG - Taking top 8 variants by coverage in window 9:62921356-62921363
2012-10-07 17:37:54,334 - DEBUG - Taking top 8 variants by coverage in window 9:62927268-62927269
2012-10-07 17:37:54,538 - DEBUG - Taking top 8 variants by coverage in window 9:62929201-62929204
2012-10-07 17:37:54,695 - DEBUG - Taking top 8 variants by coverage in window 9:62931134-62931135
2012-10-07 17:37:54,779 - DEBUG - Taking top 8 variants by coverage in window 9:62932733-62932749
2012-10-07 17:37:55,774 - DEBUG - Taking top 8 variants by coverage in window 9:62940768-62940774
2012-10-07 17:37:56,304 - DEBUG - Taking top 8 variants by coverage in window 9:62945987-62945992
2012-10-07 17:37:56,425 - DEBUG - Taking top 8 variants by coverage in window 9:62946006-62946007
2012-10-07 17:37:56,440 - DEBUG - Taking top 8 variants by coverage in window 9:62946010-62946014
2012-10-07 17:37:57,642 - DEBUG - Taking top 8 variants by coverage in window 9:62950024-62950025
2012-10-07 17:37:57,700 - DEBUG - Taking top 8 variants by coverage in window 9:62950586-62950590
2012-10-07 17:37:57,935 - DEBUG - Taking top 8 variants by coverage in window 9:62950602-62950608
2012-10-07 17:37:59,398 - DEBUG - Taking top 8 variants by coverage in window 9:62962405-62962406
2012-10-07 17:37:59,750 - DEBUG - Taking top 8 variants by coverage in window 9:62967702-62967704
2012-10-07 17:37:59,948 - DEBUG - Taking top 8 variants by coverage in window 9:62969573-62969574
2012-10-07 17:38:00,233 - DEBUG - Taking top 8 variants by coverage in window 9:62972768-62972779
2012-10-07 17:38:01,064 - DEBUG - Taking top 8 variants by coverage in window 9:62987246-62987247
2012-10-07 17:38:02,573 - DEBUG - Read 107077 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 17:38:02,835 - DEBUG - Read 115752 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 17:38:03,113 - DEBUG - Read 132835 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 17:38:03,456 - DEBUG - Read 137192 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 17:38:03,758 - DEBUG - Read 126878 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 17:38:04,023 - DEBUG - Read 120569 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 17:38:04,302 - DEBUG - Read 127623 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 17:38:04,580 - DEBUG - Read 118395 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 17:38:04,835 - DEBUG - Read 111684 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 17:38:05,091 - DEBUG - Read 109332 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 17:38:05,372 - DEBUG - Read 124118 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 17:38:05,621 - DEBUG - Read 112214 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 17:38:05,881 - DEBUG - Read 114509 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 17:38:06,144 - DEBUG - Read 125629 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 17:38:06,435 - DEBUG - Read 136053 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 17:38:06,678 - DEBUG - Read 103193 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 17:38:06,949 - DEBUG - Read 128597 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 17:38:07,228 - DEBUG - Read 122798 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 17:38:07,521 - DEBUG - Read 112351 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 17:38:07,774 - DEBUG - Read 106333 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 17:38:07,877 - DEBUG - Detected 21446 variants in 107077 reads
2012-10-07 17:38:08,041 - DEBUG - Detected 30425 variants in 115752 reads
2012-10-07 17:38:08,253 - DEBUG - Detected 39134 variants in 132835 reads
2012-10-07 17:38:08,502 - DEBUG - Detected 48669 variants in 137192 reads
2012-10-07 17:38:08,781 - DEBUG - Detected 55411 variants in 126878 reads
2012-10-07 17:38:09,116 - DEBUG - Detected 61296 variants in 120569 reads
2012-10-07 17:38:09,463 - DEBUG - Detected 74643 variants in 127623 reads
2012-10-07 17:38:09,866 - DEBUG - Detected 80187 variants in 118395 reads
2012-10-07 17:38:10,287 - DEBUG - Detected 85649 variants in 111684 reads
2012-10-07 17:38:10,731 - DEBUG - Detected 90542 variants in 109332 reads
2012-10-07 17:38:11,202 - DEBUG - Detected 95455 variants in 124118 reads
2012-10-07 17:38:11,731 - DEBUG - Detected 99153 variants in 112214 reads
2012-10-07 17:38:12,232 - DEBUG - Detected 104096 variants in 114509 reads
2012-10-07 17:38:12,767 - DEBUG - Detected 108426 variants in 125629 reads
2012-10-07 17:38:13,329 - DEBUG - Detected 116022 variants in 136053 reads
2012-10-07 17:38:13,895 - DEBUG - Detected 120157 variants in 103193 reads
2012-10-07 17:38:14,561 - DEBUG - Detected 124071 variants in 128597 reads
2012-10-07 17:38:15,185 - DEBUG - Detected 128435 variants in 122798 reads
2012-10-07 17:38:15,816 - DEBUG - Detected 132552 variants in 112351 reads
2012-10-07 17:38:16,462 - DEBUG - Detected 136888 variants in 106333 reads
2012-10-07 17:38:17,420 - DEBUG - Taking top 8 variants by coverage in window 9:63001099-63001100
2012-10-07 17:38:17,655 - DEBUG - Taking top 8 variants by coverage in window 9:63004049-63004050
2012-10-07 17:38:17,669 - DEBUG - Taking top 8 variants by coverage in window 9:63004080-63004081
2012-10-07 17:38:17,684 - DEBUG - Taking top 8 variants by coverage in window 9:63004149-63004150
2012-10-07 17:38:18,443 - DEBUG - Taking top 8 variants by coverage in window 9:63012672-63012673
2012-10-07 17:38:18,679 - DEBUG - Taking top 8 variants by coverage in window 9:63014902-63014903
2012-10-07 17:38:18,942 - DEBUG - Taking top 8 variants by coverage in window 9:63017808-63017809
2012-10-07 17:38:19,455 - DEBUG - Taking top 8 variants by coverage in window 9:63022094-63022095
2012-10-07 17:38:19,711 - DEBUG - Taking top 8 variants by coverage in window 9:63026232-63026233
2012-10-07 17:38:19,732 - DEBUG - Taking top 8 variants by coverage in window 9:63026273-63026274
2012-10-07 17:38:20,108 - DEBUG - Taking top 8 variants by coverage in window 9:63032941-63032942
2012-10-07 17:38:20,686 - DEBUG - Taking top 8 variants by coverage in window 9:63047117-63047118
2012-10-07 17:38:21,539 - DEBUG - Taking top 8 variants by coverage in window 9:63058742-63058743
2012-10-07 17:38:21,598 - DEBUG - Taking top 8 variants by coverage in window 9:63058851-63058854
2012-10-07 17:38:21,670 - DEBUG - Taking top 8 variants by coverage in window 9:63059414-63059416
2012-10-07 17:38:22,400 - DEBUG - Taking top 8 variants by coverage in window 9:63070837-63070839
2012-10-07 17:38:22,545 - DEBUG - Taking top 8 variants by coverage in window 9:63071765-63071766
2012-10-07 17:38:22,764 - DEBUG - Taking top 8 variants by coverage in window 9:63075850-63075851
2012-10-07 17:38:22,877 - DEBUG - Taking top 8 variants by coverage in window 9:63077348-63077352
2012-10-07 17:38:23,006 - DEBUG - Taking top 8 variants by coverage in window 9:63077367-63077368
2012-10-07 17:38:25,325 - DEBUG - Taking top 8 variants by coverage in window 9:63126787-63126797
2012-10-07 17:38:25,396 - DEBUG - Taking top 8 variants by coverage in window 9:63126799-63126800
2012-10-07 17:38:25,765 - DEBUG - Taking top 8 variants by coverage in window 9:63129960-63129961
2012-10-07 17:38:25,973 - DEBUG - Taking top 8 variants by coverage in window 9:63130845-63130846
2012-10-07 17:38:27,649 - DEBUG - Taking top 8 variants by coverage in window 9:63155998-63155999
2012-10-07 17:38:27,672 - DEBUG - Taking top 8 variants by coverage in window 9:63156000-63156001
2012-10-07 17:38:27,708 - DEBUG - Taking top 8 variants by coverage in window 9:63156005-63156006
2012-10-07 17:38:27,778 - DEBUG - Taking top 8 variants by coverage in window 9:63156044-63156045
2012-10-07 17:38:27,806 - DEBUG - Taking top 8 variants by coverage in window 9:63156047-63156048
2012-10-07 17:38:28,834 - DEBUG - Taking top 8 variants by coverage in window 9:63179344-63179345
2012-10-07 17:38:28,880 - DEBUG - Taking top 8 variants by coverage in window 9:63179413-63179414
2012-10-07 17:38:29,075 - DEBUG - Taking top 8 variants by coverage in window 9:63181960-63181962
2012-10-07 17:38:29,688 - DEBUG - Taking top 8 variants by coverage in window 9:63194704-63194705
2012-10-07 17:38:29,711 - DEBUG - Taking top 8 variants by coverage in window 9:63194730-63194731
2012-10-07 17:38:29,723 - DEBUG - Taking top 8 variants by coverage in window 9:63194731-63194732
2012-10-07 17:38:29,889 - DEBUG - Taking top 8 variants by coverage in window 9:63198611-63198612
2012-10-07 17:38:30,073 - DEBUG - Taking top 8 variants by coverage in window 9:63205715-63205717
2012-10-07 17:38:30,097 - DEBUG - Taking top 8 variants by coverage in window 9:63205725-63205726
2012-10-07 17:38:30,792 - DEBUG - Taking top 8 variants by coverage in window 9:63219861-63219862
2012-10-07 17:38:30,949 - DEBUG - Taking top 8 variants by coverage in window 9:63221726-63221727
2012-10-07 17:38:30,965 - DEBUG - Taking top 8 variants by coverage in window 9:63221727-63221736
2012-10-07 17:38:31,641 - DEBUG - Taking top 8 variants by coverage in window 9:63233395-63233396
2012-10-07 17:38:31,884 - DEBUG - Taking top 8 variants by coverage in window 9:63236381-63236382
2012-10-07 17:38:32,111 - DEBUG - Taking top 8 variants by coverage in window 9:63239428-63239429
2012-10-07 17:38:32,128 - DEBUG - Taking top 8 variants by coverage in window 9:63239469-63239470
2012-10-07 17:38:33,147 - DEBUG - Taking top 8 variants by coverage in window 9:63265678-63265679
2012-10-07 17:38:33,171 - DEBUG - Taking top 8 variants by coverage in window 9:63265887-63265888
2012-10-07 17:38:33,483 - DEBUG - Taking top 8 variants by coverage in window 9:63277262-63277270
2012-10-07 17:38:33,593 - DEBUG - Taking top 8 variants by coverage in window 9:63278885-63278909
2012-10-07 17:38:33,944 - DEBUG - Taking top 8 variants by coverage in window 9:63289626-63289627
2012-10-07 17:38:34,124 - DEBUG - Taking top 8 variants by coverage in window 9:63291976-63291978
2012-10-07 17:38:34,652 - DEBUG - Taking top 8 variants by coverage in window 9:63306024-63306025
2012-10-07 17:38:35,030 - DEBUG - Taking top 8 variants by coverage in window 9:63314675-63314676
2012-10-07 17:38:35,060 - DEBUG - Taking top 8 variants by coverage in window 9:63314703-63314708
2012-10-07 17:38:36,136 - DEBUG - Taking top 8 variants by coverage in window 9:63323944-63323949
2012-10-07 17:38:36,179 - DEBUG - Taking top 8 variants by coverage in window 9:63323986-63323993
2012-10-07 17:38:36,367 - DEBUG - Taking top 8 variants by coverage in window 9:63324124-63324128
2012-10-07 17:38:36,428 - DEBUG - Taking top 8 variants by coverage in window 9:63324171-63324177
2012-10-07 17:38:36,544 - DEBUG - Taking top 8 variants by coverage in window 9:63325513-63325514
2012-10-07 17:38:36,562 - DEBUG - Taking top 8 variants by coverage in window 9:63325563-63325564
2012-10-07 17:38:37,665 - DEBUG - Taking top 8 variants by coverage in window 9:63350391-63350392
2012-10-07 17:38:37,736 - DEBUG - Taking top 8 variants by coverage in window 9:63351941-63351943
2012-10-07 17:38:37,768 - DEBUG - Taking top 8 variants by coverage in window 9:63351944-63351946
2012-10-07 17:38:37,903 - DEBUG - Taking top 8 variants by coverage in window 9:63353339-63353356
2012-10-07 17:38:38,255 - DEBUG - Taking top 8 variants by coverage in window 9:63360605-63360606
2012-10-07 17:38:38,280 - DEBUG - Taking top 8 variants by coverage in window 9:63360626-63360628
2012-10-07 17:38:38,360 - DEBUG - Taking top 8 variants by coverage in window 9:63360734-63360735
2012-10-07 17:38:39,221 - DEBUG - Taking top 8 variants by coverage in window 9:63385382-63385383
2012-10-07 17:38:39,249 - DEBUG - Taking top 8 variants by coverage in window 9:63385403-63385404
2012-10-07 17:38:41,340 - DEBUG - Taking top 8 variants by coverage in window 9:63425740-63425741
2012-10-07 17:38:41,385 - DEBUG - Taking top 8 variants by coverage in window 9:63425766-63425767
2012-10-07 17:38:41,894 - DEBUG - Taking top 8 variants by coverage in window 9:63432246-63432247
2012-10-07 17:38:42,047 - DEBUG - Taking top 8 variants by coverage in window 9:63432862-63432863
2012-10-07 17:38:42,211 - DEBUG - Taking top 8 variants by coverage in window 9:63433759-63433771
2012-10-07 17:38:42,701 - DEBUG - Taking top 8 variants by coverage in window 9:63437852-63437853
2012-10-07 17:38:42,962 - DEBUG - Taking top 8 variants by coverage in window 9:63442701-63442702
2012-10-07 17:38:43,442 - DEBUG - Taking top 8 variants by coverage in window 9:63452619-63452620
2012-10-07 17:38:43,904 - DEBUG - Taking top 8 variants by coverage in window 9:63460490-63460491
2012-10-07 17:38:45,632 - DEBUG - Taking top 8 variants by coverage in window 9:63485709-63485714
2012-10-07 17:38:45,703 - DEBUG - Taking top 8 variants by coverage in window 9:63485888-63485892
2012-10-07 17:38:46,523 - DEBUG - Taking top 8 variants by coverage in window 9:63500716-63500717
2012-10-07 17:38:46,550 - DEBUG - Taking top 8 variants by coverage in window 9:63500752-63500753
2012-10-07 17:38:46,777 - DEBUG - Taking top 8 variants by coverage in window 9:63507524-63507525
2012-10-07 17:38:47,081 - DEBUG - Taking top 8 variants by coverage in window 9:63513600-63513601
2012-10-07 17:38:47,924 - DEBUG - Taking top 8 variants by coverage in window 9:63530749-63530750
2012-10-07 17:38:48,110 - DEBUG - Taking top 8 variants by coverage in window 9:63531796-63531798
2012-10-07 17:38:48,313 - DEBUG - Taking top 8 variants by coverage in window 9:63532891-63532892
2012-10-07 17:38:48,327 - DEBUG - Taking top 8 variants by coverage in window 9:63532895-63532896
2012-10-07 17:38:48,358 - DEBUG - Taking top 8 variants by coverage in window 9:63532904-63532905
2012-10-07 17:38:48,533 - DEBUG - Taking top 8 variants by coverage in window 9:63534158-63534159
2012-10-07 17:38:48,945 - DEBUG - Taking top 8 variants by coverage in window 9:63540750-63540751
2012-10-07 17:38:48,967 - DEBUG - Taking top 8 variants by coverage in window 9:63540783-63540785
2012-10-07 17:38:49,328 - DEBUG - Taking top 8 variants by coverage in window 9:63548373-63548374
2012-10-07 17:38:49,394 - DEBUG - Taking top 8 variants by coverage in window 9:63548651-63548663
2012-10-07 17:38:49,569 - DEBUG - Taking top 8 variants by coverage in window 9:63552877-63552878
2012-10-07 17:38:49,655 - DEBUG - Taking top 8 variants by coverage in window 9:63554643-63554644
2012-10-07 17:38:49,682 - DEBUG - Taking top 8 variants by coverage in window 9:63554930-63554932
2012-10-07 17:38:49,725 - DEBUG - Taking top 8 variants by coverage in window 9:63554959-63554960
2012-10-07 17:38:49,885 - DEBUG - Taking top 8 variants by coverage in window 9:63557339-63557341
2012-10-07 17:38:50,302 - DEBUG - Taking top 8 variants by coverage in window 9:63564307-63564308
2012-10-07 17:38:50,352 - DEBUG - Taking top 8 variants by coverage in window 9:63564992-63564993
2012-10-07 17:38:50,651 - DEBUG - Taking top 8 variants by coverage in window 9:63569808-63569829
2012-10-07 17:38:50,919 - DEBUG - Taking top 8 variants by coverage in window 9:63571907-63571909
2012-10-07 17:38:51,075 - DEBUG - Taking top 8 variants by coverage in window 9:63571931-63571932
2012-10-07 17:38:51,517 - DEBUG - Taking top 8 variants by coverage in window 9:63575169-63575171
2012-10-07 17:38:51,712 - DEBUG - Taking top 8 variants by coverage in window 9:63575210-63575211
2012-10-07 17:38:51,854 - DEBUG - Taking top 8 variants by coverage in window 9:63576265-63576276
2012-10-07 17:38:52,345 - DEBUG - Taking top 8 variants by coverage in window 9:63585959-63585960
2012-10-07 17:38:52,716 - DEBUG - Taking top 8 variants by coverage in window 9:63594793-63594794
2012-10-07 17:38:52,740 - DEBUG - Taking top 8 variants by coverage in window 9:63594809-63594810
2012-10-07 17:38:52,908 - DEBUG - Taking top 8 variants by coverage in window 9:63598308-63598309
2012-10-07 17:38:52,918 - DEBUG - Taking top 8 variants by coverage in window 9:63598325-63598326
2012-10-07 17:38:53,646 - DEBUG - Taking top 8 variants by coverage in window 9:63611861-63611862
2012-10-07 17:38:54,050 - DEBUG - Taking top 8 variants by coverage in window 9:63615242-63615243
2012-10-07 17:38:54,740 - DEBUG - Taking top 8 variants by coverage in window 9:63621331-63621340
2012-10-07 17:38:56,036 - DEBUG - Taking top 8 variants by coverage in window 9:63625533-63625535
2012-10-07 17:38:56,503 - DEBUG - Taking top 8 variants by coverage in window 9:63632187-63632188
2012-10-07 17:38:56,553 - DEBUG - Taking top 8 variants by coverage in window 9:63632821-63632822
2012-10-07 17:38:56,651 - DEBUG - Taking top 8 variants by coverage in window 9:63634672-63634676
2012-10-07 17:38:57,075 - DEBUG - Taking top 8 variants by coverage in window 9:63638708-63638709
2012-10-07 17:38:57,520 - DEBUG - Taking top 8 variants by coverage in window 9:63644007-63644008
2012-10-07 17:38:57,617 - DEBUG - Taking top 8 variants by coverage in window 9:63644029-63644030
2012-10-07 17:38:57,667 - DEBUG - Taking top 8 variants by coverage in window 9:63644037-63644038
2012-10-07 17:38:58,228 - DEBUG - Taking top 8 variants by coverage in window 9:63648763-63648764
2012-10-07 17:38:58,251 - DEBUG - Taking top 8 variants by coverage in window 9:63648768-63648769
2012-10-07 17:38:58,348 - DEBUG - Taking top 8 variants by coverage in window 9:63648886-63648887
2012-10-07 17:38:59,478 - DEBUG - Taking top 8 variants by coverage in window 9:63659711-63659712
2012-10-07 17:38:59,516 - DEBUG - Taking top 8 variants by coverage in window 9:63659745-63659746
2012-10-07 17:38:59,719 - DEBUG - Taking top 8 variants by coverage in window 9:63660901-63660902
2012-10-07 17:38:59,748 - DEBUG - Taking top 8 variants by coverage in window 9:63661132-63661134
2012-10-07 17:39:00,364 - DEBUG - Taking top 8 variants by coverage in window 9:63663643-63663644
2012-10-07 17:39:00,428 - DEBUG - Taking top 8 variants by coverage in window 9:63663950-63663954
2012-10-07 17:39:01,711 - DEBUG - Taking top 8 variants by coverage in window 9:63677790-63677791
2012-10-07 17:39:01,861 - DEBUG - Taking top 8 variants by coverage in window 9:63678313-63678316
2012-10-07 17:39:01,884 - DEBUG - Taking top 8 variants by coverage in window 9:63678517-63678518
2012-10-07 17:39:02,198 - DEBUG - Taking top 8 variants by coverage in window 9:63681404-63681405
2012-10-07 17:39:02,457 - DEBUG - Taking top 8 variants by coverage in window 9:63683176-63683178
2012-10-07 17:39:02,531 - DEBUG - Taking top 8 variants by coverage in window 9:63683204-63683206
2012-10-07 17:39:02,634 - DEBUG - Taking top 8 variants by coverage in window 9:63683443-63683444
2012-10-07 17:39:02,642 - DEBUG - Taking top 8 variants by coverage in window 9:63683444-63683445
2012-10-07 17:39:03,335 - DEBUG - Taking top 8 variants by coverage in window 9:63689479-63689480
2012-10-07 17:39:03,375 - DEBUG - Taking top 8 variants by coverage in window 9:63689557-63689558
2012-10-07 17:39:03,472 - DEBUG - Taking top 8 variants by coverage in window 9:63689862-63689864
2012-10-07 17:39:03,512 - DEBUG - Taking top 8 variants by coverage in window 9:63689877-63689881
2012-10-07 17:39:03,538 - DEBUG - Taking top 8 variants by coverage in window 9:63689884-63689885
2012-10-07 17:39:03,797 - DEBUG - Taking top 8 variants by coverage in window 9:63691650-63691654
2012-10-07 17:39:03,902 - DEBUG - Taking top 8 variants by coverage in window 9:63691691-63691692
2012-10-07 17:39:03,923 - DEBUG - Taking top 8 variants by coverage in window 9:63691692-63691693
2012-10-07 17:39:04,098 - DEBUG - Taking top 8 variants by coverage in window 9:63692350-63692351
2012-10-07 17:39:04,382 - DEBUG - Taking top 8 variants by coverage in window 9:63694317-63694318
2012-10-07 17:39:04,569 - DEBUG - Taking top 8 variants by coverage in window 9:63695336-63695337
2012-10-07 17:39:04,744 - DEBUG - Taking top 8 variants by coverage in window 9:63696323-63696324
2012-10-07 17:39:05,722 - DEBUG - Taking top 8 variants by coverage in window 9:63708868-63708869
2012-10-07 17:39:05,753 - DEBUG - Taking top 8 variants by coverage in window 9:63708895-63708896
2012-10-07 17:39:06,729 - DEBUG - Taking top 8 variants by coverage in window 9:63718691-63718692
2012-10-07 17:39:07,311 - DEBUG - Taking top 8 variants by coverage in window 9:63727250-63727251
2012-10-07 17:39:07,535 - DEBUG - Taking top 8 variants by coverage in window 9:63729867-63729868
2012-10-07 17:39:07,555 - DEBUG - Taking top 8 variants by coverage in window 9:63729875-63729876
2012-10-07 17:39:07,965 - DEBUG - Taking top 8 variants by coverage in window 9:63734150-63734151
2012-10-07 17:39:08,812 - DEBUG - Taking top 8 variants by coverage in window 9:63741944-63741945
2012-10-07 17:39:09,878 - DEBUG - Taking top 8 variants by coverage in window 9:63752363-63752366
2012-10-07 17:39:10,355 - DEBUG - Taking top 8 variants by coverage in window 9:63754575-63754576
2012-10-07 17:39:11,077 - DEBUG - Taking top 8 variants by coverage in window 9:63760810-63760811
2012-10-07 17:39:11,342 - DEBUG - Taking top 8 variants by coverage in window 9:63763126-63763127
2012-10-07 17:39:11,467 - DEBUG - Taking top 8 variants by coverage in window 9:63764095-63764096
2012-10-07 17:39:11,704 - DEBUG - Taking top 8 variants by coverage in window 9:63766151-63766152
2012-10-07 17:39:12,189 - DEBUG - Taking top 8 variants by coverage in window 9:63771645-63771646
2012-10-07 17:39:12,271 - DEBUG - Taking top 8 variants by coverage in window 9:63772386-63772389
2012-10-07 17:39:12,365 - DEBUG - Taking top 8 variants by coverage in window 9:63772400-63772401
2012-10-07 17:39:13,094 - DEBUG - Taking top 8 variants by coverage in window 9:63780400-63780401
2012-10-07 17:39:14,256 - DEBUG - Taking top 8 variants by coverage in window 9:63782567-63782568
2012-10-07 17:39:14,838 - DEBUG - Taking top 8 variants by coverage in window 9:63786909-63786910
2012-10-07 17:39:14,881 - DEBUG - Taking top 8 variants by coverage in window 9:63787142-63787146
2012-10-07 17:39:14,889 - DEBUG - Taking top 8 variants by coverage in window 9:63787162-63787163
2012-10-07 17:39:15,006 - DEBUG - Taking top 8 variants by coverage in window 9:63787655-63787658
2012-10-07 17:39:15,109 - DEBUG - Taking top 8 variants by coverage in window 9:63787735-63787736
2012-10-07 17:39:15,425 - DEBUG - Taking top 8 variants by coverage in window 9:63790942-63790943
2012-10-07 17:39:15,806 - DEBUG - Taking top 8 variants by coverage in window 9:63793662-63793667
2012-10-07 17:39:15,859 - DEBUG - Taking top 8 variants by coverage in window 9:63794512-63794513
2012-10-07 17:39:15,877 - DEBUG - Taking top 8 variants by coverage in window 9:63794654-63794655
2012-10-07 17:39:15,914 - DEBUG - Taking top 8 variants by coverage in window 9:63795764-63795765
2012-10-07 17:39:15,966 - DEBUG - Taking top 8 variants by coverage in window 9:63795797-63795798
2012-10-07 17:39:16,308 - DEBUG - Taking top 8 variants by coverage in window 9:63802662-63802666
2012-10-07 17:39:16,485 - DEBUG - Taking top 8 variants by coverage in window 9:63804765-63804768
2012-10-07 17:39:16,800 - DEBUG - Taking top 8 variants by coverage in window 9:63809568-63809569
2012-10-07 17:39:17,382 - DEBUG - Taking top 8 variants by coverage in window 9:63816284-63816285
2012-10-07 17:39:17,464 - DEBUG - Taking top 8 variants by coverage in window 9:63817112-63817113
2012-10-07 17:39:17,496 - DEBUG - Taking top 8 variants by coverage in window 9:63817137-63817138
2012-10-07 17:39:18,074 - DEBUG - Taking top 8 variants by coverage in window 9:63824695-63824696
2012-10-07 17:39:18,871 - DEBUG - Taking top 8 variants by coverage in window 9:63833303-63833322
2012-10-07 17:39:19,169 - DEBUG - Taking top 8 variants by coverage in window 9:63836354-63836355
2012-10-07 17:39:19,192 - DEBUG - Taking top 8 variants by coverage in window 9:63836388-63836392
2012-10-07 17:39:19,482 - DEBUG - Taking top 8 variants by coverage in window 9:63840380-63840390
2012-10-07 17:39:19,963 - DEBUG - Taking top 8 variants by coverage in window 9:63847083-63847084
2012-10-07 17:39:20,016 - DEBUG - Taking top 8 variants by coverage in window 9:63847128-63847129
2012-10-07 17:39:20,167 - DEBUG - Taking top 8 variants by coverage in window 9:63848657-63848658
2012-10-07 17:39:20,209 - DEBUG - Taking top 8 variants by coverage in window 9:63848674-63848675
2012-10-07 17:39:20,339 - DEBUG - Taking top 8 variants by coverage in window 9:63849891-63849892
2012-10-07 17:39:20,498 - DEBUG - Taking top 8 variants by coverage in window 9:63851052-63851053
2012-10-07 17:39:20,517 - DEBUG - Taking top 8 variants by coverage in window 9:63851056-63851057
2012-10-07 17:39:21,002 - DEBUG - Taking top 8 variants by coverage in window 9:63857019-63857020
2012-10-07 17:39:21,084 - DEBUG - Taking top 8 variants by coverage in window 9:63858258-63858259
2012-10-07 17:39:21,361 - DEBUG - Taking top 8 variants by coverage in window 9:63862645-63862646
2012-10-07 17:39:21,399 - DEBUG - Taking top 8 variants by coverage in window 9:63863198-63863205
2012-10-07 17:39:21,485 - DEBUG - Taking top 8 variants by coverage in window 9:63863471-63863474
2012-10-07 17:39:21,634 - DEBUG - Taking top 8 variants by coverage in window 9:63867176-63867177
2012-10-07 17:39:22,098 - DEBUG - Taking top 8 variants by coverage in window 9:63879456-63879457
2012-10-07 17:39:22,221 - DEBUG - Taking top 8 variants by coverage in window 9:63881113-63881114
2012-10-07 17:39:22,348 - DEBUG - Taking top 8 variants by coverage in window 9:63881629-63881630
2012-10-07 17:39:22,522 - DEBUG - Taking top 8 variants by coverage in window 9:63882850-63882851
2012-10-07 17:39:22,544 - DEBUG - Taking top 8 variants by coverage in window 9:63883035-63883036
2012-10-07 17:39:22,656 - DEBUG - Taking top 8 variants by coverage in window 9:63884073-63884099
2012-10-07 17:39:22,883 - DEBUG - Taking top 8 variants by coverage in window 9:63885582-63885585
2012-10-07 17:39:22,939 - DEBUG - Taking top 8 variants by coverage in window 9:63885826-63885827
2012-10-07 17:39:23,096 - DEBUG - Taking top 8 variants by coverage in window 9:63887232-63887233
2012-10-07 17:39:23,614 - DEBUG - Taking top 8 variants by coverage in window 9:63896600-63896601
2012-10-07 17:39:23,746 - DEBUG - Taking top 8 variants by coverage in window 9:63899814-63899818
2012-10-07 17:39:23,834 - DEBUG - Taking top 8 variants by coverage in window 9:63900237-63900238
2012-10-07 17:39:23,906 - DEBUG - Taking top 8 variants by coverage in window 9:63900772-63900774
2012-10-07 17:39:25,145 - DEBUG - Taking top 8 variants by coverage in window 9:63911854-63911855
2012-10-07 17:39:25,338 - DEBUG - Taking top 8 variants by coverage in window 9:63913270-63913271
2012-10-07 17:39:26,423 - DEBUG - Taking top 8 variants by coverage in window 9:63923895-63923896
2012-10-07 17:39:27,073 - DEBUG - Taking top 8 variants by coverage in window 9:63933635-63933643
2012-10-07 17:39:27,106 - DEBUG - Taking top 8 variants by coverage in window 9:63933650-63933654
2012-10-07 17:39:27,869 - DEBUG - Taking top 8 variants by coverage in window 9:63939723-63939724
2012-10-07 17:39:27,882 - DEBUG - Taking top 8 variants by coverage in window 9:63939724-63939726
2012-10-07 17:39:28,053 - DEBUG - Taking top 8 variants by coverage in window 9:63939729-63939730
2012-10-07 17:39:28,456 - DEBUG - Taking top 8 variants by coverage in window 9:63939737-63939738
2012-10-07 17:39:28,582 - DEBUG - Taking top 8 variants by coverage in window 9:63939769-63939770
2012-10-07 17:39:29,494 - DEBUG - Taking top 8 variants by coverage in window 9:63949539-63949540
2012-10-07 17:39:29,591 - DEBUG - Taking top 8 variants by coverage in window 9:63950328-63950329
2012-10-07 17:39:29,781 - DEBUG - Taking top 8 variants by coverage in window 9:63952974-63952975
2012-10-07 17:39:29,790 - DEBUG - Taking top 8 variants by coverage in window 9:63952981-63952982
2012-10-07 17:39:29,862 - DEBUG - Taking top 8 variants by coverage in window 9:63953017-63953018
2012-10-07 17:39:29,935 - DEBUG - Taking top 8 variants by coverage in window 9:63954135-63954136
2012-10-07 17:39:29,948 - DEBUG - Taking top 8 variants by coverage in window 9:63954145-63954147
2012-10-07 17:39:30,038 - DEBUG - Taking top 8 variants by coverage in window 9:63956122-63956123
2012-10-07 17:39:30,230 - DEBUG - Taking top 8 variants by coverage in window 9:63959107-63959108
2012-10-07 17:39:30,488 - DEBUG - Taking top 8 variants by coverage in window 9:63962561-63962562
2012-10-07 17:39:30,847 - DEBUG - Taking top 8 variants by coverage in window 9:63970331-63970332
2012-10-07 17:39:31,018 - DEBUG - Taking top 8 variants by coverage in window 9:63971908-63971910
2012-10-07 17:39:31,124 - DEBUG - Taking top 8 variants by coverage in window 9:63972659-63972660
2012-10-07 17:39:31,189 - DEBUG - Taking top 8 variants by coverage in window 9:63973528-63973529
2012-10-07 17:39:31,201 - DEBUG - Taking top 8 variants by coverage in window 9:63973536-63973537
2012-10-07 17:39:31,433 - DEBUG - Taking top 8 variants by coverage in window 9:63975489-63975490
2012-10-07 17:39:31,610 - DEBUG - Taking top 8 variants by coverage in window 9:63978182-63978185
2012-10-07 17:39:31,680 - DEBUG - Taking top 8 variants by coverage in window 9:63979072-63979074
2012-10-07 17:39:32,420 - DEBUG - Taking top 8 variants by coverage in window 9:63989689-63989690
2012-10-07 17:39:33,429 - DEBUG - Taking top 8 variants by coverage in window 9:63998486-63998487
2012-10-07 17:39:33,478 - DEBUG - Taking top 8 variants by coverage in window 9:63998953-63998960
2012-10-07 17:39:33,530 - DEBUG - Taking top 8 variants by coverage in window 9:63998983-63998984
2012-10-07 17:39:34,632 - DEBUG - Read 102964 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 17:39:34,885 - DEBUG - Read 110916 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 17:39:35,153 - DEBUG - Read 126336 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 17:39:35,477 - DEBUG - Read 139134 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 17:39:35,765 - DEBUG - Read 120635 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 17:39:36,023 - DEBUG - Read 115907 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 17:39:36,295 - DEBUG - Read 122479 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 17:39:36,559 - DEBUG - Read 112346 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 17:39:36,809 - DEBUG - Read 106955 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 17:39:37,055 - DEBUG - Read 104628 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 17:39:37,324 - DEBUG - Read 117489 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 17:39:37,564 - DEBUG - Read 107347 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 17:39:37,815 - DEBUG - Read 109397 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 17:39:38,065 - DEBUG - Read 119019 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 17:39:38,344 - DEBUG - Read 128825 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 17:39:38,578 - DEBUG - Read 98766 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 17:39:38,838 - DEBUG - Read 124207 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 17:39:39,109 - DEBUG - Read 117308 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 17:39:39,343 - DEBUG - Read 105607 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 17:39:39,589 - DEBUG - Read 101573 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 17:39:39,693 - DEBUG - Detected 19260 variants in 102964 reads
2012-10-07 17:39:39,845 - DEBUG - Detected 31183 variants in 110916 reads
2012-10-07 17:39:40,052 - DEBUG - Detected 41094 variants in 126336 reads
2012-10-07 17:39:40,308 - DEBUG - Detected 49832 variants in 139134 reads
2012-10-07 17:39:40,584 - DEBUG - Detected 55771 variants in 120635 reads
2012-10-07 17:39:40,884 - DEBUG - Detected 61499 variants in 115907 reads
2012-10-07 17:39:41,223 - DEBUG - Detected 74803 variants in 122479 reads
2012-10-07 17:39:41,641 - DEBUG - Detected 79647 variants in 112346 reads
2012-10-07 17:39:42,045 - DEBUG - Detected 84918 variants in 106955 reads
2012-10-07 17:39:42,478 - DEBUG - Detected 89638 variants in 104628 reads
2012-10-07 17:39:42,933 - DEBUG - Detected 94229 variants in 117489 reads
2012-10-07 17:39:43,401 - DEBUG - Detected 97977 variants in 107347 reads
2012-10-07 17:39:43,883 - DEBUG - Detected 102136 variants in 109397 reads
2012-10-07 17:39:44,442 - DEBUG - Detected 106484 variants in 119019 reads
2012-10-07 17:39:44,989 - DEBUG - Detected 114428 variants in 128825 reads
2012-10-07 17:39:45,548 - DEBUG - Detected 118303 variants in 98766 reads
2012-10-07 17:39:46,143 - DEBUG - Detected 121936 variants in 124207 reads
2012-10-07 17:39:46,754 - DEBUG - Detected 126020 variants in 117308 reads
2012-10-07 17:39:47,430 - DEBUG - Detected 130550 variants in 105607 reads
2012-10-07 17:39:48,061 - DEBUG - Detected 135592 variants in 101573 reads
2012-10-07 17:39:49,524 - DEBUG - Taking top 8 variants by coverage in window 9:64006844-64006845
2012-10-07 17:39:49,629 - DEBUG - Taking top 8 variants by coverage in window 9:64008193-64008194
2012-10-07 17:39:49,808 - DEBUG - Taking top 8 variants by coverage in window 9:64012815-64012816
2012-10-07 17:39:50,006 - DEBUG - Taking top 8 variants by coverage in window 9:64018101-64018108
2012-10-07 17:39:50,079 - DEBUG - Taking top 8 variants by coverage in window 9:64018195-64018196
2012-10-07 17:39:51,143 - DEBUG - Taking top 8 variants by coverage in window 9:64042747-64042748
2012-10-07 17:39:51,192 - DEBUG - Taking top 8 variants by coverage in window 9:64043289-64043290
2012-10-07 17:39:51,446 - DEBUG - Taking top 8 variants by coverage in window 9:64046667-64046668
2012-10-07 17:39:51,478 - DEBUG - Taking top 8 variants by coverage in window 9:64046696-64046697
2012-10-07 17:39:51,595 - DEBUG - Taking top 8 variants by coverage in window 9:64047675-64047676
2012-10-07 17:39:51,973 - DEBUG - Taking top 8 variants by coverage in window 9:64053587-64053605
2012-10-07 17:39:52,196 - DEBUG - Taking top 8 variants by coverage in window 9:64058675-64058676
2012-10-07 17:39:52,222 - DEBUG - Taking top 8 variants by coverage in window 9:64058836-64058837
2012-10-07 17:39:52,499 - DEBUG - Taking top 8 variants by coverage in window 9:64062115-64062116
2012-10-07 17:39:52,732 - DEBUG - Taking top 8 variants by coverage in window 9:64065356-64065358
2012-10-07 17:39:53,360 - DEBUG - Taking top 8 variants by coverage in window 9:64075418-64075422
2012-10-07 17:39:53,416 - DEBUG - Taking top 8 variants by coverage in window 9:64075899-64075900
2012-10-07 17:39:54,241 - DEBUG - Taking top 8 variants by coverage in window 9:64092373-64092376
2012-10-07 17:39:54,266 - DEBUG - Taking top 8 variants by coverage in window 9:64092576-64092577
2012-10-07 17:39:55,037 - DEBUG - Taking top 8 variants by coverage in window 9:64107273-64107274
2012-10-07 17:39:55,205 - DEBUG - Taking top 8 variants by coverage in window 9:64108373-64108376
2012-10-07 17:39:55,253 - DEBUG - Taking top 8 variants by coverage in window 9:64108383-64108390
2012-10-07 17:39:56,705 - DEBUG - Taking top 8 variants by coverage in window 9:64111767-64111768
2012-10-07 17:39:57,151 - DEBUG - Taking top 8 variants by coverage in window 9:64118840-64118841
2012-10-07 17:39:57,294 - DEBUG - Taking top 8 variants by coverage in window 9:64120177-64120178
2012-10-07 17:39:57,471 - DEBUG - Taking top 8 variants by coverage in window 9:64124638-64124646
2012-10-07 17:39:57,590 - DEBUG - Taking top 8 variants by coverage in window 9:64125825-64125826
2012-10-07 17:39:58,544 - DEBUG - Taking top 8 variants by coverage in window 9:64139817-64139818
2012-10-07 17:39:59,949 - DEBUG - Taking top 8 variants by coverage in window 9:64164441-64164442
2012-10-07 17:40:00,104 - DEBUG - Taking top 8 variants by coverage in window 9:64165288-64165290
2012-10-07 17:40:00,511 - DEBUG - Taking top 8 variants by coverage in window 9:64170923-64170924
2012-10-07 17:40:00,732 - DEBUG - Taking top 8 variants by coverage in window 9:64172948-64172949
2012-10-07 17:40:00,831 - DEBUG - Taking top 8 variants by coverage in window 9:64173045-64173046
2012-10-07 17:40:01,032 - DEBUG - Taking top 8 variants by coverage in window 9:64174047-64174048
2012-10-07 17:40:01,646 - DEBUG - Taking top 8 variants by coverage in window 9:64179156-64179158
2012-10-07 17:40:01,666 - DEBUG - Taking top 8 variants by coverage in window 9:64179324-64179335
2012-10-07 17:40:01,866 - DEBUG - Taking top 8 variants by coverage in window 9:64179413-64179414
2012-10-07 17:40:01,904 - DEBUG - Taking top 8 variants by coverage in window 9:64179432-64179433
2012-10-07 17:40:01,922 - DEBUG - Taking top 8 variants by coverage in window 9:64179433-64179434
2012-10-07 17:40:02,817 - DEBUG - Taking top 8 variants by coverage in window 9:64190697-64190698
2012-10-07 17:40:03,431 - DEBUG - Taking top 8 variants by coverage in window 9:64199290-64199293
2012-10-07 17:40:03,580 - DEBUG - Taking top 8 variants by coverage in window 9:64200514-64200515
2012-10-07 17:40:03,793 - DEBUG - Taking top 8 variants by coverage in window 9:64202044-64202045
2012-10-07 17:40:05,031 - DEBUG - Taking top 8 variants by coverage in window 9:64215314-64215316
2012-10-07 17:40:05,293 - DEBUG - Taking top 8 variants by coverage in window 9:64215894-64215895
2012-10-07 17:40:05,309 - DEBUG - Taking top 8 variants by coverage in window 9:64215896-64215897
2012-10-07 17:40:05,323 - DEBUG - Taking top 8 variants by coverage in window 9:64215901-64215906
2012-10-07 17:40:05,654 - DEBUG - Taking top 8 variants by coverage in window 9:64217530-64217534
2012-10-07 17:40:05,890 - DEBUG - Taking top 8 variants by coverage in window 9:64218200-64218201
2012-10-07 17:40:06,252 - DEBUG - Taking top 8 variants by coverage in window 9:64225096-64225097
2012-10-07 17:40:06,302 - DEBUG - Taking top 8 variants by coverage in window 9:64225137-64225138
2012-10-07 17:40:06,576 - DEBUG - Taking top 8 variants by coverage in window 9:64227563-64227564
2012-10-07 17:40:07,564 - DEBUG - Taking top 8 variants by coverage in window 9:64244069-64244070
2012-10-07 17:40:07,898 - DEBUG - Taking top 8 variants by coverage in window 9:64246198-64246199
2012-10-07 17:40:08,213 - DEBUG - Taking top 8 variants by coverage in window 9:64247731-64247732
2012-10-07 17:40:08,522 - DEBUG - Taking top 8 variants by coverage in window 9:64252440-64252449
2012-10-07 17:40:08,574 - DEBUG - Taking top 8 variants by coverage in window 9:64252483-64252484
2012-10-07 17:40:08,603 - DEBUG - Taking top 8 variants by coverage in window 9:64252556-64252557
2012-10-07 17:40:08,811 - DEBUG - Taking top 8 variants by coverage in window 9:64254251-64254252
2012-10-07 17:40:08,823 - DEBUG - Taking top 8 variants by coverage in window 9:64254252-64254253
2012-10-07 17:40:09,047 - DEBUG - Taking top 8 variants by coverage in window 9:64257404-64257406
2012-10-07 17:40:09,154 - DEBUG - Taking top 8 variants by coverage in window 9:64258306-64258307
2012-10-07 17:40:09,873 - DEBUG - Taking top 8 variants by coverage in window 9:64268896-64268897
2012-10-07 17:40:09,891 - DEBUG - Taking top 8 variants by coverage in window 9:64268898-64268899
2012-10-07 17:40:10,507 - DEBUG - Taking top 8 variants by coverage in window 9:64276398-64276405
2012-10-07 17:40:10,562 - DEBUG - Taking top 8 variants by coverage in window 9:64276419-64276420
2012-10-07 17:40:10,739 - DEBUG - Taking top 8 variants by coverage in window 9:64276964-64276971
2012-10-07 17:40:11,321 - DEBUG - Taking top 8 variants by coverage in window 9:64284305-64284307
2012-10-07 17:40:11,545 - DEBUG - Taking top 8 variants by coverage in window 9:64285775-64285778
2012-10-07 17:40:11,998 - DEBUG - Taking top 8 variants by coverage in window 9:64290538-64290539
2012-10-07 17:40:12,059 - DEBUG - Taking top 8 variants by coverage in window 9:64290832-64290833
2012-10-07 17:40:12,701 - DEBUG - Taking top 8 variants by coverage in window 9:64296758-64296759
2012-10-07 17:40:12,713 - DEBUG - Taking top 8 variants by coverage in window 9:64296767-64296768
2012-10-07 17:40:12,733 - DEBUG - Taking top 8 variants by coverage in window 9:64296777-64296778
2012-10-07 17:40:12,834 - DEBUG - Taking top 8 variants by coverage in window 9:64297948-64297950
2012-10-07 17:40:12,862 - DEBUG - Taking top 8 variants by coverage in window 9:64297978-64297979
2012-10-07 17:40:13,225 - DEBUG - Taking top 8 variants by coverage in window 9:64300857-64300858
2012-10-07 17:40:13,268 - DEBUG - Taking top 8 variants by coverage in window 9:64300908-64300909
2012-10-07 17:40:13,429 - DEBUG - Taking top 8 variants by coverage in window 9:64302362-64302363
2012-10-07 17:40:14,337 - DEBUG - Taking top 8 variants by coverage in window 9:64315205-64315206
2012-10-07 17:40:14,606 - DEBUG - Taking top 8 variants by coverage in window 9:64319133-64319134
2012-10-07 17:40:14,623 - DEBUG - Taking top 8 variants by coverage in window 9:64319135-64319136
2012-10-07 17:40:15,687 - DEBUG - Taking top 8 variants by coverage in window 9:64333214-64333215
2012-10-07 17:40:16,259 - DEBUG - Taking top 8 variants by coverage in window 9:64337821-64337823
2012-10-07 17:40:16,452 - DEBUG - Taking top 8 variants by coverage in window 9:64338106-64338127
2012-10-07 17:40:17,706 - DEBUG - Taking top 8 variants by coverage in window 9:64354884-64354885
2012-10-07 17:40:17,727 - DEBUG - Taking top 8 variants by coverage in window 9:64354889-64354890
2012-10-07 17:40:18,403 - DEBUG - Taking top 8 variants by coverage in window 9:64361299-64361300
2012-10-07 17:40:18,520 - DEBUG - Taking top 8 variants by coverage in window 9:64362554-64362555
2012-10-07 17:40:19,264 - DEBUG - Taking top 8 variants by coverage in window 9:64372214-64372216
2012-10-07 17:40:19,281 - DEBUG - Taking top 8 variants by coverage in window 9:64372217-64372219
2012-10-07 17:40:20,692 - DEBUG - Taking top 8 variants by coverage in window 9:64384457-64384458
2012-10-07 17:40:20,839 - DEBUG - Taking top 8 variants by coverage in window 9:64385421-64385422
2012-10-07 17:40:20,856 - DEBUG - Taking top 8 variants by coverage in window 9:64385426-64385427
2012-10-07 17:40:21,753 - DEBUG - Taking top 8 variants by coverage in window 9:64395337-64395338
2012-10-07 17:40:22,491 - DEBUG - Taking top 8 variants by coverage in window 9:64407299-64407301
2012-10-07 17:40:23,090 - DEBUG - Taking top 8 variants by coverage in window 9:64419882-64419883
2012-10-07 17:40:23,283 - DEBUG - Taking top 8 variants by coverage in window 9:64422934-64422935
2012-10-07 17:40:23,319 - DEBUG - Taking top 8 variants by coverage in window 9:64423007-64423008
2012-10-07 17:40:23,655 - DEBUG - Taking top 8 variants by coverage in window 9:64428548-64428549
2012-10-07 17:40:23,696 - DEBUG - Taking top 8 variants by coverage in window 9:64428557-64428558
2012-10-07 17:40:23,726 - DEBUG - Taking top 8 variants by coverage in window 9:64428596-64428599
2012-10-07 17:40:23,877 - DEBUG - Taking top 8 variants by coverage in window 9:64430584-64430586
2012-10-07 17:40:24,653 - DEBUG - Taking top 8 variants by coverage in window 9:64431538-64431539
2012-10-07 17:40:25,006 - DEBUG - Taking top 8 variants by coverage in window 9:64435704-64435705
2012-10-07 17:40:25,039 - DEBUG - Taking top 8 variants by coverage in window 9:64435721-64435722
2012-10-07 17:40:25,452 - DEBUG - Taking top 8 variants by coverage in window 9:64439096-64439100
2012-10-07 17:40:25,515 - DEBUG - Taking top 8 variants by coverage in window 9:64439144-64439145
2012-10-07 17:40:25,941 - DEBUG - Taking top 8 variants by coverage in window 9:64445993-64445994
2012-10-07 17:40:26,151 - DEBUG - Taking top 8 variants by coverage in window 9:64449744-64449745
2012-10-07 17:40:26,185 - DEBUG - Taking top 8 variants by coverage in window 9:64449913-64449914
2012-10-07 17:40:26,581 - DEBUG - Taking top 8 variants by coverage in window 9:64454257-64454258
2012-10-07 17:40:27,463 - DEBUG - Taking top 8 variants by coverage in window 9:64461351-64461352
2012-10-07 17:40:27,888 - DEBUG - Taking top 8 variants by coverage in window 9:64469749-64469750
2012-10-07 17:40:27,924 - DEBUG - Taking top 8 variants by coverage in window 9:64470189-64470190
2012-10-07 17:40:28,249 - DEBUG - Taking top 8 variants by coverage in window 9:64472471-64472472
2012-10-07 17:40:28,482 - DEBUG - Taking top 8 variants by coverage in window 9:64474779-64474780
2012-10-07 17:40:28,550 - DEBUG - Taking top 8 variants by coverage in window 9:64475606-64475609
2012-10-07 17:40:28,561 - DEBUG - Taking top 8 variants by coverage in window 9:64475616-64475617
2012-10-07 17:40:28,788 - DEBUG - Taking top 8 variants by coverage in window 9:64476906-64476907
2012-10-07 17:40:29,317 - DEBUG - Taking top 8 variants by coverage in window 9:64484320-64484321
2012-10-07 17:40:29,373 - DEBUG - Taking top 8 variants by coverage in window 9:64484621-64484622
2012-10-07 17:40:29,413 - DEBUG - Taking top 8 variants by coverage in window 9:64484707-64484715
2012-10-07 17:40:29,441 - DEBUG - Taking top 8 variants by coverage in window 9:64484731-64484732
2012-10-07 17:40:29,740 - DEBUG - Taking top 8 variants by coverage in window 9:64488349-64488350
2012-10-07 17:40:29,857 - DEBUG - Taking top 8 variants by coverage in window 9:64489772-64489773
2012-10-07 17:40:30,078 - DEBUG - Taking top 8 variants by coverage in window 9:64492396-64492397
2012-10-07 17:40:31,283 - DEBUG - Taking top 8 variants by coverage in window 9:64510100-64510101
2012-10-07 17:40:31,867 - DEBUG - Taking top 8 variants by coverage in window 9:64517432-64517433
2012-10-07 17:40:31,996 - DEBUG - Taking top 8 variants by coverage in window 9:64520481-64520482
2012-10-07 17:40:32,014 - DEBUG - Taking top 8 variants by coverage in window 9:64520512-64520513
2012-10-07 17:40:32,759 - DEBUG - Taking top 8 variants by coverage in window 9:64527140-64527141
2012-10-07 17:40:33,062 - DEBUG - Taking top 8 variants by coverage in window 9:64529731-64529732
2012-10-07 17:40:33,358 - DEBUG - Taking top 8 variants by coverage in window 9:64534635-64534636
2012-10-07 17:40:33,858 - DEBUG - Taking top 8 variants by coverage in window 9:64552889-64552890
2012-10-07 17:40:33,886 - DEBUG - Taking top 8 variants by coverage in window 9:64552892-64552894
2012-10-07 17:40:36,774 - DEBUG - Taking top 8 variants by coverage in window 9:64557954-64557958
2012-10-07 17:40:37,067 - DEBUG - Taking top 8 variants by coverage in window 9:64571071-64571072
2012-10-07 17:40:37,949 - DEBUG - Taking top 8 variants by coverage in window 9:64597984-64597985
2012-10-07 17:40:38,050 - DEBUG - Taking top 8 variants by coverage in window 9:64599197-64599198
2012-10-07 17:40:38,564 - DEBUG - Taking top 8 variants by coverage in window 9:64607562-64607566
2012-10-07 17:40:38,618 - DEBUG - Taking top 8 variants by coverage in window 9:64607638-64607639
2012-10-07 17:40:38,667 - DEBUG - Taking top 8 variants by coverage in window 9:64607841-64607842
2012-10-07 17:40:38,846 - DEBUG - Taking top 8 variants by coverage in window 9:64609121-64609122
2012-10-07 17:40:39,054 - DEBUG - Taking top 8 variants by coverage in window 9:64610836-64610842
2012-10-07 17:40:39,771 - DEBUG - Taking top 8 variants by coverage in window 9:64615354-64615355
2012-10-07 17:40:39,876 - DEBUG - Taking top 8 variants by coverage in window 9:64616747-64616748
2012-10-07 17:40:39,895 - DEBUG - Taking top 8 variants by coverage in window 9:64616925-64616926
2012-10-07 17:40:39,904 - DEBUG - Taking top 8 variants by coverage in window 9:64616982-64616984
2012-10-07 17:40:39,939 - DEBUG - Taking top 8 variants by coverage in window 9:64617025-64617026
2012-10-07 17:40:40,546 - DEBUG - Taking top 8 variants by coverage in window 9:64631770-64631771
2012-10-07 17:40:40,706 - DEBUG - Taking top 8 variants by coverage in window 9:64635046-64635057
2012-10-07 17:40:41,035 - DEBUG - Taking top 8 variants by coverage in window 9:64641597-64641598
2012-10-07 17:40:41,753 - DEBUG - Taking top 8 variants by coverage in window 9:64652410-64652411
2012-10-07 17:40:42,189 - DEBUG - Taking top 8 variants by coverage in window 9:64661559-64661560
2012-10-07 17:40:42,619 - DEBUG - Taking top 8 variants by coverage in window 9:64671836-64671839
2012-10-07 17:40:42,665 - DEBUG - Taking top 8 variants by coverage in window 9:64672531-64672532
2012-10-07 17:40:42,735 - DEBUG - Taking top 8 variants by coverage in window 9:64672557-64672558
2012-10-07 17:40:43,364 - DEBUG - Taking top 8 variants by coverage in window 9:64684923-64684924
2012-10-07 17:40:44,192 - DEBUG - Taking top 8 variants by coverage in window 9:64694594-64694602
2012-10-07 17:40:44,686 - DEBUG - Taking top 8 variants by coverage in window 9:64702969-64702970
2012-10-07 17:40:44,898 - DEBUG - Taking top 8 variants by coverage in window 9:64706533-64706534
2012-10-07 17:40:45,012 - DEBUG - Taking top 8 variants by coverage in window 9:64708386-64708387
2012-10-07 17:40:46,005 - DEBUG - Taking top 8 variants by coverage in window 9:64730612-64730613
2012-10-07 17:40:46,410 - DEBUG - Taking top 8 variants by coverage in window 9:64735789-64735790
2012-10-07 17:40:46,637 - DEBUG - Taking top 8 variants by coverage in window 9:64748672-64748675
2012-10-07 17:40:48,286 - DEBUG - Taking top 8 variants by coverage in window 9:64781899-64781900
2012-10-07 17:40:48,427 - DEBUG - Taking top 8 variants by coverage in window 9:64784104-64784105
2012-10-07 17:40:48,577 - DEBUG - Taking top 8 variants by coverage in window 9:64785736-64785737
2012-10-07 17:40:48,605 - DEBUG - Taking top 8 variants by coverage in window 9:64785752-64785753
2012-10-07 17:40:48,800 - DEBUG - Taking top 8 variants by coverage in window 9:64786788-64786789
2012-10-07 17:40:49,034 - DEBUG - Taking top 8 variants by coverage in window 9:64787851-64787852
2012-10-07 17:40:49,893 - DEBUG - Taking top 8 variants by coverage in window 9:64800309-64800310
2012-10-07 17:40:49,922 - DEBUG - Taking top 8 variants by coverage in window 9:64800315-64800316
2012-10-07 17:40:50,085 - DEBUG - Taking top 8 variants by coverage in window 9:64802206-64802209
2012-10-07 17:40:50,446 - DEBUG - Taking top 8 variants by coverage in window 9:64805622-64805623
2012-10-07 17:40:51,535 - DEBUG - Taking top 8 variants by coverage in window 9:64816207-64816208
2012-10-07 17:40:51,552 - DEBUG - Taking top 8 variants by coverage in window 9:64816220-64816221
2012-10-07 17:40:51,777 - DEBUG - Taking top 8 variants by coverage in window 9:64819690-64819692
2012-10-07 17:40:52,058 - DEBUG - Taking top 8 variants by coverage in window 9:64823861-64823862
2012-10-07 17:40:52,117 - DEBUG - Taking top 8 variants by coverage in window 9:64823889-64823890
2012-10-07 17:40:52,158 - DEBUG - Taking top 8 variants by coverage in window 9:64823896-64823897
2012-10-07 17:40:52,510 - DEBUG - Taking top 8 variants by coverage in window 9:64827370-64827371
2012-10-07 17:40:52,667 - DEBUG - Taking top 8 variants by coverage in window 9:64828535-64828536
2012-10-07 17:40:53,862 - DEBUG - Taking top 8 variants by coverage in window 9:64846838-64846839
2012-10-07 17:40:54,093 - DEBUG - Taking top 8 variants by coverage in window 9:64849246-64849247
2012-10-07 17:40:54,116 - DEBUG - Taking top 8 variants by coverage in window 9:64849249-64849250
2012-10-07 17:40:54,342 - DEBUG - Taking top 8 variants by coverage in window 9:64850838-64850839
2012-10-07 17:40:54,834 - DEBUG - Taking top 8 variants by coverage in window 9:64856991-64856993
2012-10-07 17:40:55,551 - DEBUG - Taking top 8 variants by coverage in window 9:64865638-64865644
2012-10-07 17:40:55,725 - DEBUG - Taking top 8 variants by coverage in window 9:64867945-64867946
2012-10-07 17:40:55,743 - DEBUG - Taking top 8 variants by coverage in window 9:64867950-64867953
2012-10-07 17:40:56,165 - DEBUG - Taking top 8 variants by coverage in window 9:64876495-64876507
2012-10-07 17:40:57,419 - DEBUG - Taking top 8 variants by coverage in window 9:64906397-64906398
2012-10-07 17:40:57,541 - DEBUG - Taking top 8 variants by coverage in window 9:64907566-64907567
2012-10-07 17:40:57,622 - DEBUG - Taking top 8 variants by coverage in window 9:64909172-64909173
2012-10-07 17:40:57,851 - DEBUG - Taking top 8 variants by coverage in window 9:64911943-64911944
2012-10-07 17:40:57,870 - DEBUG - Taking top 8 variants by coverage in window 9:64911955-64911956
2012-10-07 17:40:57,889 - DEBUG - Taking top 8 variants by coverage in window 9:64911969-64911970
2012-10-07 17:40:57,901 - DEBUG - Taking top 8 variants by coverage in window 9:64911970-64911971
2012-10-07 17:40:58,158 - DEBUG - Taking top 8 variants by coverage in window 9:64917458-64917470
2012-10-07 17:40:58,459 - DEBUG - Taking top 8 variants by coverage in window 9:64924991-64924995
2012-10-07 17:40:58,865 - DEBUG - Taking top 8 variants by coverage in window 9:64935032-64935033
2012-10-07 17:40:59,144 - DEBUG - Taking top 8 variants by coverage in window 9:64937647-64937648
2012-10-07 17:40:59,332 - DEBUG - Taking top 8 variants by coverage in window 9:64939539-64939540
2012-10-07 17:40:59,548 - DEBUG - Taking top 8 variants by coverage in window 9:64942135-64942136
2012-10-07 17:40:59,642 - DEBUG - Taking top 8 variants by coverage in window 9:64943102-64943103
2012-10-07 17:41:00,338 - DEBUG - Taking top 8 variants by coverage in window 9:64956251-64956252
2012-10-07 17:41:00,671 - DEBUG - Taking top 8 variants by coverage in window 9:64964256-64964257
2012-10-07 17:41:01,044 - DEBUG - Taking top 8 variants by coverage in window 9:64970148-64970162
2012-10-07 17:41:01,704 - DEBUG - Taking top 8 variants by coverage in window 9:64982766-64982771
2012-10-07 17:41:01,755 - DEBUG - Taking top 8 variants by coverage in window 9:64983527-64983528
2012-10-07 17:41:02,022 - DEBUG - Taking top 8 variants by coverage in window 9:64987722-64987726
2012-10-07 17:41:02,251 - DEBUG - Taking top 8 variants by coverage in window 9:64991055-64991059
2012-10-07 17:41:02,576 - DEBUG - Taking top 8 variants by coverage in window 9:64993305-64993306
2012-10-07 17:41:03,185 - DEBUG - Taking top 8 variants by coverage in window 9:64999189-64999190
2012-10-07 17:41:03,277 - DEBUG - Taking top 8 variants by coverage in window 9:64999275-64999276
2012-10-07 17:41:03,314 - DEBUG - Taking top 8 variants by coverage in window 9:64999357-64999358
2012-10-07 17:41:04,191 - INFO - Processing region 9:65000000-66000000
2012-10-07 17:41:04,418 - DEBUG - Read 99840 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 17:41:04,665 - DEBUG - Read 107259 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 17:41:04,926 - DEBUG - Read 122215 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 17:41:05,221 - DEBUG - Read 125784 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 17:41:05,501 - DEBUG - Read 116243 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 17:41:05,750 - DEBUG - Read 111498 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 17:41:06,012 - DEBUG - Read 118553 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 17:41:06,269 - DEBUG - Read 108243 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 17:41:06,508 - DEBUG - Read 103072 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 17:41:06,748 - DEBUG - Read 101552 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 17:41:07,011 - DEBUG - Read 114568 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 17:41:07,243 - DEBUG - Read 103097 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 17:41:07,483 - DEBUG - Read 102992 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 17:41:07,728 - DEBUG - Read 115164 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 17:41:07,998 - DEBUG - Read 123359 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 17:41:08,296 - DEBUG - Read 93378 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 17:41:08,549 - DEBUG - Read 119457 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 17:41:08,807 - DEBUG - Read 112502 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 17:41:09,031 - DEBUG - Read 100191 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 17:41:09,270 - DEBUG - Read 98281 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 17:41:09,365 - DEBUG - Detected 20512 variants in 99840 reads
2012-10-07 17:41:09,531 - DEBUG - Detected 30796 variants in 107259 reads
2012-10-07 17:41:09,737 - DEBUG - Detected 39974 variants in 122215 reads
2012-10-07 17:41:09,981 - DEBUG - Detected 49413 variants in 125784 reads
2012-10-07 17:41:10,256 - DEBUG - Detected 55569 variants in 116243 reads
2012-10-07 17:41:10,555 - DEBUG - Detected 61387 variants in 111498 reads
2012-10-07 17:41:10,896 - DEBUG - Detected 75927 variants in 118553 reads
2012-10-07 17:41:11,327 - DEBUG - Detected 81918 variants in 108243 reads
2012-10-07 17:41:11,742 - DEBUG - Detected 88203 variants in 103072 reads
2012-10-07 17:41:12,186 - DEBUG - Detected 93238 variants in 101552 reads
2012-10-07 17:41:12,663 - DEBUG - Detected 98318 variants in 114568 reads
2012-10-07 17:41:13,150 - DEBUG - Detected 102744 variants in 103097 reads
2012-10-07 17:41:13,660 - DEBUG - Detected 106773 variants in 102992 reads
2012-10-07 17:41:14,244 - DEBUG - Detected 111285 variants in 115164 reads
2012-10-07 17:41:14,811 - DEBUG - Detected 118897 variants in 123359 reads
2012-10-07 17:41:15,388 - DEBUG - Detected 122650 variants in 93378 reads
2012-10-07 17:41:16,009 - DEBUG - Detected 126562 variants in 119457 reads
2012-10-07 17:41:16,640 - DEBUG - Detected 130563 variants in 112502 reads
2012-10-07 17:41:17,342 - DEBUG - Detected 134683 variants in 100191 reads
2012-10-07 17:41:18,001 - DEBUG - Detected 139228 variants in 98281 reads
2012-10-07 17:41:19,983 - DEBUG - Taking top 8 variants by coverage in window 9:65016406-65016407
2012-10-07 17:41:20,031 - DEBUG - Taking top 8 variants by coverage in window 9:65016852-65016853
2012-10-07 17:41:20,266 - DEBUG - Taking top 8 variants by coverage in window 9:65020240-65020264
2012-10-07 17:41:20,422 - DEBUG - Taking top 8 variants by coverage in window 9:65021601-65021614
2012-10-07 17:41:21,702 - DEBUG - Taking top 8 variants by coverage in window 9:65043178-65043179
2012-10-07 17:41:21,753 - DEBUG - Taking top 8 variants by coverage in window 9:65043205-65043206
2012-10-07 17:41:21,780 - DEBUG - Taking top 8 variants by coverage in window 9:65043206-65043207
2012-10-07 17:41:22,147 - DEBUG - Taking top 8 variants by coverage in window 9:65044297-65044298
2012-10-07 17:41:22,153 - DEBUG - Taking top 8 variants by coverage in window 9:65044298-65044304
2012-10-07 17:41:22,704 - DEBUG - Taking top 8 variants by coverage in window 9:65048880-65048881
2012-10-07 17:41:23,870 - DEBUG - Taking top 8 variants by coverage in window 9:65067990-65067991
2012-10-07 17:41:23,941 - DEBUG - Taking top 8 variants by coverage in window 9:65068268-65068270
2012-10-07 17:41:23,977 - DEBUG - Taking top 8 variants by coverage in window 9:65068310-65068312
2012-10-07 17:41:24,144 - DEBUG - Taking top 8 variants by coverage in window 9:65069437-65069438
2012-10-07 17:41:24,205 - DEBUG - Taking top 8 variants by coverage in window 9:65069471-65069479
2012-10-07 17:41:24,582 - DEBUG - Taking top 8 variants by coverage in window 9:65071495-65071496
2012-10-07 17:41:25,002 - DEBUG - Taking top 8 variants by coverage in window 9:65075629-65075640
2012-10-07 17:41:25,430 - DEBUG - Taking top 8 variants by coverage in window 9:65079507-65079518
2012-10-07 17:41:25,525 - DEBUG - Taking top 8 variants by coverage in window 9:65079949-65079950
2012-10-07 17:41:25,721 - DEBUG - Taking top 8 variants by coverage in window 9:65080960-65080961
2012-10-07 17:41:26,833 - DEBUG - Taking top 8 variants by coverage in window 9:65096967-65096969
2012-10-07 17:41:27,055 - DEBUG - Taking top 8 variants by coverage in window 9:65098724-65098725
2012-10-07 17:41:27,672 - DEBUG - Taking top 8 variants by coverage in window 9:65104622-65104623
2012-10-07 17:41:27,736 - DEBUG - Taking top 8 variants by coverage in window 9:65105091-65105092
2012-10-07 17:41:28,188 - DEBUG - Taking top 8 variants by coverage in window 9:65109319-65109320
2012-10-07 17:41:28,253 - DEBUG - Taking top 8 variants by coverage in window 9:65109415-65109421
2012-10-07 17:41:28,575 - DEBUG - Taking top 8 variants by coverage in window 9:65112035-65112038
2012-10-07 17:41:29,063 - DEBUG - Taking top 8 variants by coverage in window 9:65116876-65116877
2012-10-07 17:41:29,214 - DEBUG - Taking top 8 variants by coverage in window 9:65118268-65118269
2012-10-07 17:41:29,633 - DEBUG - Taking top 8 variants by coverage in window 9:65122468-65122469
2012-10-07 17:41:29,657 - DEBUG - Taking top 8 variants by coverage in window 9:65122473-65122475
2012-10-07 17:41:29,808 - DEBUG - Taking top 8 variants by coverage in window 9:65123966-65123967
2012-10-07 17:41:29,872 - DEBUG - Taking top 8 variants by coverage in window 9:65125206-65125207
2012-10-07 17:41:30,471 - DEBUG - Taking top 8 variants by coverage in window 9:65134174-65134175
2012-10-07 17:41:30,520 - DEBUG - Taking top 8 variants by coverage in window 9:65134775-65134776
2012-10-07 17:41:30,671 - DEBUG - Taking top 8 variants by coverage in window 9:65135832-65135833
2012-10-07 17:41:31,347 - DEBUG - Taking top 8 variants by coverage in window 9:65142811-65142812
2012-10-07 17:41:31,454 - DEBUG - Taking top 8 variants by coverage in window 9:65143908-65143909
2012-10-07 17:41:31,803 - DEBUG - Taking top 8 variants by coverage in window 9:65148655-65148656
2012-10-07 17:41:31,866 - DEBUG - Taking top 8 variants by coverage in window 9:65148692-65148693
2012-10-07 17:41:32,614 - DEBUG - Taking top 8 variants by coverage in window 9:65162112-65162114
2012-10-07 17:41:33,467 - DEBUG - Taking top 8 variants by coverage in window 9:65179782-65179785
2012-10-07 17:41:34,197 - DEBUG - Taking top 8 variants by coverage in window 9:65186870-65186871
2012-10-07 17:41:34,223 - DEBUG - Taking top 8 variants by coverage in window 9:65186875-65186876
2012-10-07 17:41:34,603 - DEBUG - Taking top 8 variants by coverage in window 9:65191006-65191007
2012-10-07 17:41:34,820 - DEBUG - Taking top 8 variants by coverage in window 9:65191911-65191915
2012-10-07 17:41:35,631 - DEBUG - Taking top 8 variants by coverage in window 9:65203846-65203847
2012-10-07 17:41:36,165 - DEBUG - Taking top 8 variants by coverage in window 9:65210652-65210653
2012-10-07 17:41:36,193 - DEBUG - Taking top 8 variants by coverage in window 9:65210709-65210710
2012-10-07 17:41:36,546 - DEBUG - Taking top 8 variants by coverage in window 9:65215118-65215120
2012-10-07 17:41:36,803 - DEBUG - Taking top 8 variants by coverage in window 9:65218859-65218860
2012-10-07 17:41:37,088 - DEBUG - Taking top 8 variants by coverage in window 9:65223355-65223356
2012-10-07 17:41:37,486 - DEBUG - Taking top 8 variants by coverage in window 9:65231063-65231078
2012-10-07 17:41:37,635 - DEBUG - Taking top 8 variants by coverage in window 9:65232843-65232845
2012-10-07 17:41:37,655 - DEBUG - Taking top 8 variants by coverage in window 9:65232849-65232850
2012-10-07 17:41:38,107 - DEBUG - Taking top 8 variants by coverage in window 9:65237087-65237088
2012-10-07 17:41:39,205 - DEBUG - Taking top 8 variants by coverage in window 9:65250160-65250161
2012-10-07 17:41:40,003 - DEBUG - Taking top 8 variants by coverage in window 9:65258265-65258268
2012-10-07 17:41:40,069 - DEBUG - Taking top 8 variants by coverage in window 9:65258299-65258300
2012-10-07 17:41:40,696 - DEBUG - Taking top 8 variants by coverage in window 9:65265852-65265853
2012-10-07 17:41:40,801 - DEBUG - Taking top 8 variants by coverage in window 9:65265854-65265855
2012-10-07 17:41:40,819 - DEBUG - Taking top 8 variants by coverage in window 9:65265855-65265856
2012-10-07 17:41:41,357 - DEBUG - Taking top 8 variants by coverage in window 9:65271725-65271726
2012-10-07 17:41:41,425 - DEBUG - Taking top 8 variants by coverage in window 9:65271919-65271923
2012-10-07 17:41:41,921 - DEBUG - Taking top 8 variants by coverage in window 9:65276139-65276140
2012-10-07 17:41:41,983 - DEBUG - Taking top 8 variants by coverage in window 9:65276249-65276251
2012-10-07 17:41:42,018 - DEBUG - Taking top 8 variants by coverage in window 9:65276380-65276386
2012-10-07 17:41:42,037 - DEBUG - Taking top 8 variants by coverage in window 9:65276402-65276403
2012-10-07 17:41:44,001 - DEBUG - Taking top 8 variants by coverage in window 9:65299249-65299250
2012-10-07 17:41:44,025 - DEBUG - Taking top 8 variants by coverage in window 9:65299266-65299267
2012-10-07 17:41:44,300 - DEBUG - Taking top 8 variants by coverage in window 9:65302684-65302685
2012-10-07 17:41:44,341 - DEBUG - Taking top 8 variants by coverage in window 9:65302733-65302734
2012-10-07 17:41:44,357 - DEBUG - Taking top 8 variants by coverage in window 9:65302760-65302761
2012-10-07 17:41:44,844 - DEBUG - Taking top 8 variants by coverage in window 9:65312486-65312488
2012-10-07 17:41:45,198 - DEBUG - Taking top 8 variants by coverage in window 9:65316215-65316216
2012-10-07 17:41:45,516 - DEBUG - Taking top 8 variants by coverage in window 9:65320282-65320290
2012-10-07 17:41:45,852 - DEBUG - Taking top 8 variants by coverage in window 9:65320293-65320294
2012-10-07 17:41:45,906 - DEBUG - Taking top 8 variants by coverage in window 9:65320400-65320404
2012-10-07 17:41:47,114 - DEBUG - Taking top 8 variants by coverage in window 9:65330542-65330543
2012-10-07 17:41:47,976 - DEBUG - Taking top 8 variants by coverage in window 9:65338089-65338090
2012-10-07 17:41:48,583 - DEBUG - Taking top 8 variants by coverage in window 9:65346669-65346670
2012-10-07 17:41:48,779 - DEBUG - Taking top 8 variants by coverage in window 9:65347990-65347991
2012-10-07 17:41:48,816 - DEBUG - Taking top 8 variants by coverage in window 9:65348014-65348016
2012-10-07 17:41:49,252 - DEBUG - Taking top 8 variants by coverage in window 9:65352596-65352597
2012-10-07 17:41:49,296 - DEBUG - Taking top 8 variants by coverage in window 9:65352619-65352620
2012-10-07 17:41:49,881 - DEBUG - Taking top 8 variants by coverage in window 9:65359038-65359039
2012-10-07 17:41:50,091 - DEBUG - Taking top 8 variants by coverage in window 9:65361094-65361095
2012-10-07 17:41:50,310 - DEBUG - Taking top 8 variants by coverage in window 9:65363505-65363506
2012-10-07 17:41:50,403 - DEBUG - Taking top 8 variants by coverage in window 9:65364126-65364127
2012-10-07 17:41:50,504 - DEBUG - Taking top 8 variants by coverage in window 9:65364155-65364156
2012-10-07 17:41:50,708 - DEBUG - Taking top 8 variants by coverage in window 9:65365798-65365815
2012-10-07 17:41:50,722 - DEBUG - Taking top 8 variants by coverage in window 9:65365830-65365831
2012-10-07 17:41:51,158 - DEBUG - Taking top 8 variants by coverage in window 9:65374674-65374675
2012-10-07 17:41:51,189 - DEBUG - Taking top 8 variants by coverage in window 9:65374720-65374721
2012-10-07 17:41:51,459 - DEBUG - Taking top 8 variants by coverage in window 9:65378943-65378944
2012-10-07 17:41:51,577 - DEBUG - Taking top 8 variants by coverage in window 9:65380667-65380668
2012-10-07 17:41:51,703 - DEBUG - Taking top 8 variants by coverage in window 9:65381525-65381526
2012-10-07 17:41:52,334 - DEBUG - Taking top 8 variants by coverage in window 9:65387510-65387511
2012-10-07 17:41:53,088 - DEBUG - Taking top 8 variants by coverage in window 9:65398113-65398114
2012-10-07 17:41:53,272 - DEBUG - Taking top 8 variants by coverage in window 9:65401809-65401810
2012-10-07 17:41:54,238 - DEBUG - Taking top 8 variants by coverage in window 9:65418281-65418282
2012-10-07 17:41:54,826 - DEBUG - Taking top 8 variants by coverage in window 9:65428766-65428767
2012-10-07 17:41:55,240 - DEBUG - Taking top 8 variants by coverage in window 9:65435461-65435462
2012-10-07 17:41:56,077 - DEBUG - Taking top 8 variants by coverage in window 9:65449084-65449087
2012-10-07 17:41:56,408 - DEBUG - Taking top 8 variants by coverage in window 9:65452537-65452539
2012-10-07 17:41:57,382 - DEBUG - Taking top 8 variants by coverage in window 9:65467867-65467868
2012-10-07 17:41:57,418 - DEBUG - Taking top 8 variants by coverage in window 9:65467878-65467889
2012-10-07 17:41:57,459 - DEBUG - Taking top 8 variants by coverage in window 9:65468216-65468217
2012-10-07 17:41:58,858 - DEBUG - Taking top 8 variants by coverage in window 9:65493179-65493180
2012-10-07 17:41:58,920 - DEBUG - Taking top 8 variants by coverage in window 9:65493250-65493251
2012-10-07 17:41:59,354 - DEBUG - Taking top 8 variants by coverage in window 9:65498159-65498160
2012-10-07 17:42:00,527 - DEBUG - Taking top 8 variants by coverage in window 9:65514406-65514407
2012-10-07 17:42:00,559 - DEBUG - Taking top 8 variants by coverage in window 9:65514600-65514601
2012-10-07 17:42:00,855 - DEBUG - Taking top 8 variants by coverage in window 9:65519212-65519214
2012-10-07 17:42:01,405 - DEBUG - Taking top 8 variants by coverage in window 9:65533832-65533838
2012-10-07 17:42:02,114 - DEBUG - Taking top 8 variants by coverage in window 9:65553716-65553717
2012-10-07 17:42:02,856 - DEBUG - Taking top 8 variants by coverage in window 9:65563212-65563213
2012-10-07 17:42:02,933 - DEBUG - Taking top 8 variants by coverage in window 9:65563918-65563932
2012-10-07 17:42:06,273 - DEBUG - Taking top 8 variants by coverage in window 9:65563942-65563952
2012-10-07 17:42:06,284 - DEBUG - Taking top 8 variants by coverage in window 9:65563953-65563958
2012-10-07 17:42:08,538 - DEBUG - Taking top 8 variants by coverage in window 9:65609591-65609592
2012-10-07 17:42:08,963 - DEBUG - Taking top 8 variants by coverage in window 9:65617050-65617051
2012-10-07 17:42:10,472 - DEBUG - Taking top 8 variants by coverage in window 9:65643992-65643993
2012-10-07 17:42:10,495 - DEBUG - Taking top 8 variants by coverage in window 9:65643999-65644004
2012-10-07 17:42:10,565 - DEBUG - Taking top 8 variants by coverage in window 9:65644955-65644957
2012-10-07 17:42:10,747 - DEBUG - Taking top 8 variants by coverage in window 9:65647602-65647603
2012-10-07 17:42:10,870 - DEBUG - Taking top 8 variants by coverage in window 9:65649274-65649277
2012-10-07 17:42:10,889 - DEBUG - Taking top 8 variants by coverage in window 9:65649301-65649302
2012-10-07 17:42:11,133 - DEBUG - Taking top 8 variants by coverage in window 9:65653968-65653969
2012-10-07 17:42:11,213 - DEBUG - Taking top 8 variants by coverage in window 9:65655447-65655452
2012-10-07 17:42:11,312 - DEBUG - Taking top 8 variants by coverage in window 9:65655478-65655485
2012-10-07 17:42:11,801 - DEBUG - Taking top 8 variants by coverage in window 9:65661067-65661068
2012-10-07 17:42:12,190 - DEBUG - Taking top 8 variants by coverage in window 9:65665797-65665798
2012-10-07 17:42:12,968 - DEBUG - Taking top 8 variants by coverage in window 9:65685288-65685289
2012-10-07 17:42:13,115 - DEBUG - Taking top 8 variants by coverage in window 9:65688756-65688757
2012-10-07 17:42:13,133 - DEBUG - Taking top 8 variants by coverage in window 9:65688782-65688783
2012-10-07 17:42:13,324 - DEBUG - Taking top 8 variants by coverage in window 9:65694078-65694079
2012-10-07 17:42:13,426 - DEBUG - Taking top 8 variants by coverage in window 9:65694153-65694154
2012-10-07 17:42:13,553 - DEBUG - Taking top 8 variants by coverage in window 9:65695692-65695693
2012-10-07 17:42:14,099 - DEBUG - Taking top 8 variants by coverage in window 9:65706875-65706876
2012-10-07 17:42:14,108 - DEBUG - Taking top 8 variants by coverage in window 9:65706887-65706888
2012-10-07 17:42:14,568 - DEBUG - Taking top 8 variants by coverage in window 9:65713475-65713476
2012-10-07 17:42:15,461 - DEBUG - Taking top 8 variants by coverage in window 9:65724755-65724756
2012-10-07 17:42:16,032 - DEBUG - Taking top 8 variants by coverage in window 9:65739372-65739373
2012-10-07 17:42:16,099 - DEBUG - Taking top 8 variants by coverage in window 9:65740330-65740331
2012-10-07 17:42:16,267 - DEBUG - Taking top 8 variants by coverage in window 9:65743519-65743520
2012-10-07 17:42:16,596 - DEBUG - Taking top 8 variants by coverage in window 9:65748829-65748830
2012-10-07 17:42:16,752 - DEBUG - Taking top 8 variants by coverage in window 9:65751154-65751155
2012-10-07 17:42:17,016 - DEBUG - Taking top 8 variants by coverage in window 9:65758412-65758413
2012-10-07 17:42:17,083 - DEBUG - Taking top 8 variants by coverage in window 9:65759973-65759974
2012-10-07 17:42:17,423 - DEBUG - Taking top 8 variants by coverage in window 9:65766397-65766398
2012-10-07 17:42:17,591 - DEBUG - Taking top 8 variants by coverage in window 9:65769805-65769806
2012-10-07 17:42:17,634 - DEBUG - Taking top 8 variants by coverage in window 9:65770590-65770591
2012-10-07 17:42:18,146 - DEBUG - Taking top 8 variants by coverage in window 9:65781179-65781180
2012-10-07 17:42:18,203 - DEBUG - Taking top 8 variants by coverage in window 9:65781232-65781233
2012-10-07 17:42:18,748 - DEBUG - Taking top 8 variants by coverage in window 9:65788760-65788761
2012-10-07 17:42:18,812 - DEBUG - Taking top 8 variants by coverage in window 9:65789463-65789466
2012-10-07 17:42:18,924 - DEBUG - Taking top 8 variants by coverage in window 9:65795030-65795035
2012-10-07 17:42:19,652 - DEBUG - Taking top 8 variants by coverage in window 9:65803198-65803199
2012-10-07 17:42:20,272 - DEBUG - Taking top 8 variants by coverage in window 9:65814588-65814589
2012-10-07 17:42:20,359 - DEBUG - Taking top 8 variants by coverage in window 9:65815687-65815688
2012-10-07 17:42:20,515 - DEBUG - Taking top 8 variants by coverage in window 9:65818351-65818352
2012-10-07 17:42:20,556 - DEBUG - Taking top 8 variants by coverage in window 9:65818708-65818734
2012-10-07 17:42:20,593 - DEBUG - Taking top 8 variants by coverage in window 9:65818791-65818792
2012-10-07 17:42:20,610 - DEBUG - Taking top 8 variants by coverage in window 9:65818796-65818797
2012-10-07 17:42:20,774 - DEBUG - Taking top 8 variants by coverage in window 9:65821660-65821662
2012-10-07 17:42:21,088 - DEBUG - Taking top 8 variants by coverage in window 9:65826335-65826336
2012-10-07 17:42:21,119 - DEBUG - Taking top 8 variants by coverage in window 9:65826540-65826541
2012-10-07 17:42:21,243 - DEBUG - Taking top 8 variants by coverage in window 9:65827169-65827171
2012-10-07 17:42:21,958 - DEBUG - Taking top 8 variants by coverage in window 9:65840442-65840443
2012-10-07 17:42:22,543 - DEBUG - Taking top 8 variants by coverage in window 9:65853204-65853205
2012-10-07 17:42:23,430 - DEBUG - Taking top 8 variants by coverage in window 9:65868749-65868750
2012-10-07 17:42:23,471 - DEBUG - Taking top 8 variants by coverage in window 9:65868770-65868771
2012-10-07 17:42:23,486 - DEBUG - Taking top 8 variants by coverage in window 9:65868773-65868774
2012-10-07 17:42:23,547 - DEBUG - Taking top 8 variants by coverage in window 9:65870180-65870181
2012-10-07 17:42:23,565 - DEBUG - Taking top 8 variants by coverage in window 9:65870207-65870208
2012-10-07 17:42:23,613 - DEBUG - Taking top 8 variants by coverage in window 9:65871032-65871033
2012-10-07 17:42:23,814 - DEBUG - Taking top 8 variants by coverage in window 9:65876054-65876055
2012-10-07 17:42:23,909 - DEBUG - Taking top 8 variants by coverage in window 9:65879714-65879715
2012-10-07 17:42:24,356 - DEBUG - Taking top 8 variants by coverage in window 9:65894610-65894611
2012-10-07 17:42:24,528 - DEBUG - Taking top 8 variants by coverage in window 9:65895462-65895463
2012-10-07 17:42:25,255 - DEBUG - Taking top 8 variants by coverage in window 9:65904188-65904193
2012-10-07 17:42:25,289 - DEBUG - Taking top 8 variants by coverage in window 9:65904215-65904216
2012-10-07 17:42:25,412 - DEBUG - Taking top 8 variants by coverage in window 9:65907047-65907048
2012-10-07 17:42:25,426 - DEBUG - Taking top 8 variants by coverage in window 9:65907050-65907051
2012-10-07 17:42:25,669 - DEBUG - Taking top 8 variants by coverage in window 9:65911253-65911254
2012-10-07 17:42:25,713 - DEBUG - Taking top 8 variants by coverage in window 9:65911270-65911271
2012-10-07 17:42:26,231 - DEBUG - Taking top 8 variants by coverage in window 9:65912954-65912962
2012-10-07 17:42:26,553 - DEBUG - Taking top 8 variants by coverage in window 9:65919071-65919072
2012-10-07 17:42:26,731 - DEBUG - Taking top 8 variants by coverage in window 9:65920106-65920107
2012-10-07 17:42:27,027 - DEBUG - Taking top 8 variants by coverage in window 9:65923416-65923417
2012-10-07 17:42:27,124 - DEBUG - Taking top 8 variants by coverage in window 9:65924557-65924558
2012-10-07 17:42:28,698 - DEBUG - Taking top 8 variants by coverage in window 9:65952960-65952961
2012-10-07 17:42:28,862 - DEBUG - Taking top 8 variants by coverage in window 9:65955520-65955521
2012-10-07 17:42:29,124 - DEBUG - Taking top 8 variants by coverage in window 9:65959956-65959957
2012-10-07 17:42:29,644 - DEBUG - Taking top 8 variants by coverage in window 9:65965301-65965302
2012-10-07 17:42:29,932 - DEBUG - Taking top 8 variants by coverage in window 9:65969620-65969621
2012-10-07 17:42:30,193 - DEBUG - Taking top 8 variants by coverage in window 9:65975478-65975481
2012-10-07 17:42:30,701 - DEBUG - Taking top 8 variants by coverage in window 9:65982796-65982803
2012-10-07 17:42:31,139 - DEBUG - Taking top 8 variants by coverage in window 9:65988261-65988262
2012-10-07 17:42:31,334 - DEBUG - Taking top 8 variants by coverage in window 9:65990351-65990352
2012-10-07 17:42:31,349 - DEBUG - Taking top 8 variants by coverage in window 9:65990365-65990366
2012-10-07 17:42:31,529 - DEBUG - Taking top 8 variants by coverage in window 9:65992127-65992128
2012-10-07 17:42:31,546 - DEBUG - Taking top 8 variants by coverage in window 9:65992130-65992131
2012-10-07 17:42:31,564 - DEBUG - Taking top 8 variants by coverage in window 9:65992175-65992176
2012-10-07 17:42:31,600 - DEBUG - Taking top 8 variants by coverage in window 9:65993701-65993703
2012-10-07 17:42:31,714 - DEBUG - Taking top 8 variants by coverage in window 9:65993718-65993719
2012-10-07 17:42:31,730 - DEBUG - Taking top 8 variants by coverage in window 9:65993734-65993740
2012-10-07 17:42:33,398 - DEBUG - Read 99289 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 17:42:33,645 - DEBUG - Read 107985 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 17:42:33,907 - DEBUG - Read 123831 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 17:42:34,201 - DEBUG - Read 125559 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 17:42:34,481 - DEBUG - Read 118249 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 17:42:34,729 - DEBUG - Read 111793 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 17:42:34,988 - DEBUG - Read 118532 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 17:42:35,247 - DEBUG - Read 109683 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 17:42:35,485 - DEBUG - Read 102230 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 17:42:35,722 - DEBUG - Read 101577 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 17:42:35,986 - DEBUG - Read 115380 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 17:42:36,216 - DEBUG - Read 102603 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 17:42:36,456 - DEBUG - Read 103944 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 17:42:36,700 - DEBUG - Read 115211 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 17:42:36,971 - DEBUG - Read 124974 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 17:42:37,289 - DEBUG - Read 93743 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 17:42:37,541 - DEBUG - Read 119399 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 17:42:37,800 - DEBUG - Read 113277 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 17:42:38,067 - DEBUG - Read 99945 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 17:42:38,304 - DEBUG - Read 98309 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 17:42:38,402 - DEBUG - Detected 21997 variants in 99289 reads
2012-10-07 17:42:38,556 - DEBUG - Detected 29961 variants in 107985 reads
2012-10-07 17:42:38,767 - DEBUG - Detected 38684 variants in 123831 reads
2012-10-07 17:42:39,001 - DEBUG - Detected 45665 variants in 125559 reads
2012-10-07 17:42:39,253 - DEBUG - Detected 51469 variants in 118249 reads
2012-10-07 17:42:39,527 - DEBUG - Detected 57308 variants in 111793 reads
2012-10-07 17:42:39,837 - DEBUG - Detected 70616 variants in 118532 reads
2012-10-07 17:42:40,199 - DEBUG - Detected 75870 variants in 109683 reads
2012-10-07 17:42:40,578 - DEBUG - Detected 81242 variants in 102230 reads
2012-10-07 17:42:41,003 - DEBUG - Detected 85316 variants in 101577 reads
2012-10-07 17:42:41,430 - DEBUG - Detected 89712 variants in 115380 reads
2012-10-07 17:42:41,861 - DEBUG - Detected 93245 variants in 102603 reads
2012-10-07 17:42:42,306 - DEBUG - Detected 96978 variants in 103944 reads
2012-10-07 17:42:42,777 - DEBUG - Detected 100879 variants in 115211 reads
2012-10-07 17:42:43,277 - DEBUG - Detected 108002 variants in 124974 reads
2012-10-07 17:42:43,816 - DEBUG - Detected 112141 variants in 93743 reads
2012-10-07 17:42:44,355 - DEBUG - Detected 115568 variants in 119399 reads
2012-10-07 17:42:44,904 - DEBUG - Detected 120582 variants in 113277 reads
2012-10-07 17:42:45,461 - DEBUG - Detected 124421 variants in 99945 reads
2012-10-07 17:42:46,034 - DEBUG - Detected 128690 variants in 98309 reads
2012-10-07 17:42:46,847 - DEBUG - Taking top 8 variants by coverage in window 9:66000988-66000989
2012-10-07 17:42:46,972 - DEBUG - Taking top 8 variants by coverage in window 9:66003901-66003902
2012-10-07 17:42:47,489 - DEBUG - Taking top 8 variants by coverage in window 9:66012689-66012690
2012-10-07 17:42:48,059 - DEBUG - Taking top 8 variants by coverage in window 9:66020672-66020683
2012-10-07 17:42:48,086 - DEBUG - Taking top 8 variants by coverage in window 9:66020718-66020719
2012-10-07 17:42:48,338 - DEBUG - Taking top 8 variants by coverage in window 9:66023553-66023565
2012-10-07 17:42:48,851 - DEBUG - Taking top 8 variants by coverage in window 9:66030674-66030675
2012-10-07 17:42:48,945 - DEBUG - Taking top 8 variants by coverage in window 9:66030906-66030907
2012-10-07 17:42:49,615 - DEBUG - Taking top 8 variants by coverage in window 9:66038642-66038643
2012-10-07 17:42:49,679 - DEBUG - Taking top 8 variants by coverage in window 9:66038719-66038721
2012-10-07 17:42:50,089 - DEBUG - Taking top 8 variants by coverage in window 9:66042577-66042580
2012-10-07 17:42:50,425 - DEBUG - Taking top 8 variants by coverage in window 9:66042818-66042819
2012-10-07 17:42:50,705 - DEBUG - Taking top 8 variants by coverage in window 9:66044272-66044273
2012-10-07 17:42:51,148 - DEBUG - Taking top 8 variants by coverage in window 9:66051567-66051568
2012-10-07 17:42:51,500 - DEBUG - Taking top 8 variants by coverage in window 9:66056386-66056387
2012-10-07 17:42:51,612 - DEBUG - Taking top 8 variants by coverage in window 9:66058092-66058093
2012-10-07 17:42:51,672 - DEBUG - Taking top 8 variants by coverage in window 9:66058440-66058441
2012-10-07 17:42:51,835 - DEBUG - Taking top 8 variants by coverage in window 9:66061110-66061120
2012-10-07 17:42:52,008 - DEBUG - Taking top 8 variants by coverage in window 9:66062339-66062346
2012-10-07 17:42:52,751 - DEBUG - Taking top 8 variants by coverage in window 9:66071141-66071157
2012-10-07 17:42:53,241 - DEBUG - Taking top 8 variants by coverage in window 9:66077127-66077128
2012-10-07 17:42:53,268 - DEBUG - Taking top 8 variants by coverage in window 9:66077143-66077144
2012-10-07 17:42:53,281 - DEBUG - Taking top 8 variants by coverage in window 9:66077149-66077150
2012-10-07 17:42:53,540 - DEBUG - Taking top 8 variants by coverage in window 9:66079419-66079420
2012-10-07 17:42:54,831 - DEBUG - Taking top 8 variants by coverage in window 9:66103669-66103670
2012-10-07 17:42:55,252 - DEBUG - Taking top 8 variants by coverage in window 9:66110987-66110995
2012-10-07 17:42:55,477 - DEBUG - Taking top 8 variants by coverage in window 9:66111774-66111776
2012-10-07 17:42:55,550 - DEBUG - Taking top 8 variants by coverage in window 9:66112247-66112252
2012-10-07 17:42:55,984 - DEBUG - Taking top 8 variants by coverage in window 9:66117313-66117314
2012-10-07 17:42:56,136 - DEBUG - Taking top 8 variants by coverage in window 9:66121810-66121811
2012-10-07 17:42:56,671 - DEBUG - Taking top 8 variants by coverage in window 9:66134194-66134195
2012-10-07 17:42:56,760 - DEBUG - Taking top 8 variants by coverage in window 9:66135257-66135258
2012-10-07 17:42:56,955 - DEBUG - Taking top 8 variants by coverage in window 9:66137075-66137086
2012-10-07 17:42:57,085 - DEBUG - Taking top 8 variants by coverage in window 9:66139457-66139458
2012-10-07 17:42:57,493 - DEBUG - Taking top 8 variants by coverage in window 9:66143919-66143920
2012-10-07 17:42:57,611 - DEBUG - Taking top 8 variants by coverage in window 9:66145812-66145813
2012-10-07 17:42:57,682 - DEBUG - Taking top 8 variants by coverage in window 9:66147774-66147775
2012-10-07 17:42:58,577 - DEBUG - Taking top 8 variants by coverage in window 9:66165737-66165738
2012-10-07 17:42:58,631 - DEBUG - Taking top 8 variants by coverage in window 9:66165770-66165771
2012-10-07 17:42:59,309 - DEBUG - Taking top 8 variants by coverage in window 9:66182534-66182535
2012-10-07 17:42:59,440 - DEBUG - Taking top 8 variants by coverage in window 9:66184820-66184834
2012-10-07 17:42:59,942 - DEBUG - Taking top 8 variants by coverage in window 9:66190669-66190670
2012-10-07 17:43:00,408 - DEBUG - Taking top 8 variants by coverage in window 9:66199107-66199108
2012-10-07 17:43:00,545 - DEBUG - Taking top 8 variants by coverage in window 9:66201874-66201885
2012-10-07 17:43:00,559 - DEBUG - Taking top 8 variants by coverage in window 9:66201886-66201887
2012-10-07 17:43:00,574 - DEBUG - Taking top 8 variants by coverage in window 9:66201888-66201889
2012-10-07 17:43:00,776 - DEBUG - Taking top 8 variants by coverage in window 9:66206347-66206348
2012-10-07 17:43:01,049 - DEBUG - Taking top 8 variants by coverage in window 9:66212870-66212871
2012-10-07 17:43:01,599 - DEBUG - Taking top 8 variants by coverage in window 9:66222926-66222927
2012-10-07 17:43:01,728 - DEBUG - Taking top 8 variants by coverage in window 9:66224632-66224633
2012-10-07 17:43:02,633 - DEBUG - Taking top 8 variants by coverage in window 9:66250074-66250075
2012-10-07 17:43:02,977 - DEBUG - Taking top 8 variants by coverage in window 9:66265825-66265826
2012-10-07 17:43:03,440 - DEBUG - Taking top 8 variants by coverage in window 9:66290720-66290721
2012-10-07 17:43:04,110 - DEBUG - Taking top 8 variants by coverage in window 9:66317304-66317308
2012-10-07 17:43:04,211 - DEBUG - Taking top 8 variants by coverage in window 9:66317338-66317339
2012-10-07 17:43:04,714 - DEBUG - Taking top 8 variants by coverage in window 9:66333655-66333656
2012-10-07 17:43:04,798 - DEBUG - Taking top 8 variants by coverage in window 9:66336047-66336051
2012-10-07 17:43:04,959 - DEBUG - Taking top 8 variants by coverage in window 9:66340619-66340620
2012-10-07 17:43:06,179 - DEBUG - Taking top 8 variants by coverage in window 9:66379775-66379779
2012-10-07 17:43:06,298 - DEBUG - Taking top 8 variants by coverage in window 9:66382150-66382151
2012-10-07 17:43:06,678 - DEBUG - Taking top 8 variants by coverage in window 9:66395913-66395914
2012-10-07 17:43:06,721 - DEBUG - Taking top 8 variants by coverage in window 9:66397847-66397851
2012-10-07 17:43:06,745 - DEBUG - Taking top 8 variants by coverage in window 9:66397853-66397854
2012-10-07 17:43:07,058 - DEBUG - Taking top 8 variants by coverage in window 9:66409154-66409155
2012-10-07 17:43:07,195 - DEBUG - Taking top 8 variants by coverage in window 9:66415599-66415600
2012-10-07 17:43:07,207 - DEBUG - Taking top 8 variants by coverage in window 9:66415631-66415632
2012-10-07 17:43:07,381 - DEBUG - Taking top 8 variants by coverage in window 9:66426249-66426250
2012-10-07 17:43:08,037 - DEBUG - Taking top 8 variants by coverage in window 9:66447280-66447282
2012-10-07 17:43:08,072 - DEBUG - Taking top 8 variants by coverage in window 9:66447408-66447409
2012-10-07 17:43:08,571 - DEBUG - Taking top 8 variants by coverage in window 9:66455464-66455467
2012-10-07 17:43:08,632 - DEBUG - Taking top 8 variants by coverage in window 9:66455550-66455558
2012-10-07 17:43:08,942 - DEBUG - Taking top 8 variants by coverage in window 9:66461048-66461049
2012-10-07 17:43:09,136 - DEBUG - Taking top 8 variants by coverage in window 9:66464373-66464374
2012-10-07 17:43:09,494 - DEBUG - Taking top 8 variants by coverage in window 9:66469196-66469197
2012-10-07 17:43:10,239 - DEBUG - Taking top 8 variants by coverage in window 9:66487353-66487354
2012-10-07 17:43:10,399 - DEBUG - Taking top 8 variants by coverage in window 9:66490785-66490790
2012-10-07 17:43:10,754 - DEBUG - Taking top 8 variants by coverage in window 9:66490850-66490853
2012-10-07 17:43:11,020 - DEBUG - Taking top 8 variants by coverage in window 9:66490890-66490891
2012-10-07 17:43:11,546 - DEBUG - Taking top 8 variants by coverage in window 9:66496655-66496657
2012-10-07 17:43:11,881 - DEBUG - Taking top 8 variants by coverage in window 9:66499774-66499778
2012-10-07 17:43:12,253 - DEBUG - Taking top 8 variants by coverage in window 9:66502395-66502396
2012-10-07 17:43:12,571 - DEBUG - Taking top 8 variants by coverage in window 9:66508788-66508797
2012-10-07 17:43:13,505 - DEBUG - Taking top 8 variants by coverage in window 9:66519018-66519020
2012-10-07 17:43:13,679 - DEBUG - Taking top 8 variants by coverage in window 9:66520679-66520680
2012-10-07 17:43:14,134 - DEBUG - Taking top 8 variants by coverage in window 9:66526462-66526463
2012-10-07 17:43:14,525 - DEBUG - Taking top 8 variants by coverage in window 9:66530548-66530549
2012-10-07 17:43:14,553 - DEBUG - Taking top 8 variants by coverage in window 9:66530576-66530577
2012-10-07 17:43:14,620 - DEBUG - Taking top 8 variants by coverage in window 9:66531406-66531407
2012-10-07 17:43:15,318 - DEBUG - Taking top 8 variants by coverage in window 9:66540997-66540998
2012-10-07 17:43:15,334 - DEBUG - Taking top 8 variants by coverage in window 9:66541009-66541010
2012-10-07 17:43:15,402 - DEBUG - Taking top 8 variants by coverage in window 9:66541296-66541298
2012-10-07 17:43:15,749 - DEBUG - Taking top 8 variants by coverage in window 9:66545041-66545042
2012-10-07 17:43:15,908 - DEBUG - Taking top 8 variants by coverage in window 9:66546781-66546784
2012-10-07 17:43:16,389 - DEBUG - Taking top 8 variants by coverage in window 9:66551733-66551734
2012-10-07 17:43:17,228 - DEBUG - Taking top 8 variants by coverage in window 9:66559007-66559008
2012-10-07 17:43:17,732 - DEBUG - Taking top 8 variants by coverage in window 9:66569606-66569607
2012-10-07 17:43:17,924 - DEBUG - Taking top 8 variants by coverage in window 9:66572142-66572143
2012-10-07 17:43:18,093 - DEBUG - Taking top 8 variants by coverage in window 9:66574162-66574163
2012-10-07 17:43:18,305 - DEBUG - Taking top 8 variants by coverage in window 9:66576407-66576408
2012-10-07 17:43:18,468 - DEBUG - Taking top 8 variants by coverage in window 9:66577767-66577769
2012-10-07 17:43:18,479 - DEBUG - Taking top 8 variants by coverage in window 9:66577772-66577774
2012-10-07 17:43:18,631 - DEBUG - Taking top 8 variants by coverage in window 9:66577958-66577959
2012-10-07 17:43:18,751 - DEBUG - Taking top 8 variants by coverage in window 9:66579729-66579730
2012-10-07 17:43:18,806 - DEBUG - Taking top 8 variants by coverage in window 9:66579826-66579827
2012-10-07 17:43:18,855 - DEBUG - Taking top 8 variants by coverage in window 9:66579875-66579876
2012-10-07 17:43:19,371 - DEBUG - Taking top 8 variants by coverage in window 9:66587131-66587133
2012-10-07 17:43:20,445 - DEBUG - Taking top 8 variants by coverage in window 9:66599896-66599897
2012-10-07 17:43:20,684 - DEBUG - Taking top 8 variants by coverage in window 9:66604351-66604352
2012-10-07 17:43:21,397 - DEBUG - Taking top 8 variants by coverage in window 9:66617667-66617668
2012-10-07 17:43:22,684 - DEBUG - Taking top 8 variants by coverage in window 9:66637980-66637981
2012-10-07 17:43:23,233 - DEBUG - Taking top 8 variants by coverage in window 9:66642942-66642943
2012-10-07 17:43:23,342 - DEBUG - Taking top 8 variants by coverage in window 9:66643678-66643679
2012-10-07 17:43:23,388 - DEBUG - Taking top 8 variants by coverage in window 9:66643782-66643783
2012-10-07 17:43:23,701 - DEBUG - Taking top 8 variants by coverage in window 9:66646952-66646953
2012-10-07 17:43:23,716 - DEBUG - Taking top 8 variants by coverage in window 9:66646960-66646961
2012-10-07 17:43:23,883 - DEBUG - Taking top 8 variants by coverage in window 9:66648880-66648881
2012-10-07 17:43:25,013 - DEBUG - Taking top 8 variants by coverage in window 9:66669490-66669494
2012-10-07 17:43:25,210 - DEBUG - Taking top 8 variants by coverage in window 9:66672923-66672924
2012-10-07 17:43:25,228 - DEBUG - Taking top 8 variants by coverage in window 9:66672924-66672925
2012-10-07 17:43:26,188 - DEBUG - Taking top 8 variants by coverage in window 9:66693529-66693530
2012-10-07 17:43:28,119 - DEBUG - Taking top 8 variants by coverage in window 9:66724243-66724244
2012-10-07 17:43:28,644 - DEBUG - Taking top 8 variants by coverage in window 9:66730870-66730871
2012-10-07 17:43:29,288 - DEBUG - Taking top 8 variants by coverage in window 9:66742193-66742194
2012-10-07 17:43:29,810 - DEBUG - Taking top 8 variants by coverage in window 9:66752255-66752256
2012-10-07 17:43:29,986 - DEBUG - Taking top 8 variants by coverage in window 9:66753652-66753653
2012-10-07 17:43:30,715 - DEBUG - Taking top 8 variants by coverage in window 9:66764718-66764727
2012-10-07 17:43:31,507 - DEBUG - Taking top 8 variants by coverage in window 9:66777609-66777610
2012-10-07 17:43:31,586 - DEBUG - Taking top 8 variants by coverage in window 9:66778027-66778028
2012-10-07 17:43:31,815 - DEBUG - Taking top 8 variants by coverage in window 9:66780614-66780618
2012-10-07 17:43:32,053 - DEBUG - Taking top 8 variants by coverage in window 9:66782836-66782837
2012-10-07 17:43:32,505 - DEBUG - Taking top 8 variants by coverage in window 9:66787296-66787297
2012-10-07 17:43:32,765 - DEBUG - Taking top 8 variants by coverage in window 9:66791115-66791116
2012-10-07 17:43:32,823 - DEBUG - Taking top 8 variants by coverage in window 9:66791761-66791764
2012-10-07 17:43:32,840 - DEBUG - Taking top 8 variants by coverage in window 9:66791943-66791944
2012-10-07 17:43:32,849 - DEBUG - Taking top 8 variants by coverage in window 9:66791965-66791966
2012-10-07 17:43:33,078 - DEBUG - Taking top 8 variants by coverage in window 9:66795518-66795519
2012-10-07 17:43:33,468 - DEBUG - Taking top 8 variants by coverage in window 9:66801625-66801626
2012-10-07 17:43:33,607 - DEBUG - Taking top 8 variants by coverage in window 9:66803392-66803393
2012-10-07 17:43:35,076 - DEBUG - Taking top 8 variants by coverage in window 9:66825650-66825651
2012-10-07 17:43:35,145 - DEBUG - Taking top 8 variants by coverage in window 9:66825961-66825962
2012-10-07 17:43:35,160 - DEBUG - Taking top 8 variants by coverage in window 9:66825967-66825968
2012-10-07 17:43:35,168 - DEBUG - Taking top 8 variants by coverage in window 9:66825968-66825979
2012-10-07 17:43:35,347 - DEBUG - Taking top 8 variants by coverage in window 9:66827620-66827625
2012-10-07 17:43:35,504 - DEBUG - Taking top 8 variants by coverage in window 9:66828755-66828756
2012-10-07 17:43:36,003 - DEBUG - Taking top 8 variants by coverage in window 9:66833416-66833427
2012-10-07 17:43:36,042 - DEBUG - Taking top 8 variants by coverage in window 9:66833515-66833516
2012-10-07 17:43:37,061 - DEBUG - Taking top 8 variants by coverage in window 9:66844145-66844148
2012-10-07 17:43:37,950 - DEBUG - Taking top 8 variants by coverage in window 9:66852508-66852509
2012-10-07 17:43:38,708 - DEBUG - Taking top 8 variants by coverage in window 9:66862745-66862746
2012-10-07 17:43:38,733 - DEBUG - Taking top 8 variants by coverage in window 9:66862964-66862969
2012-10-07 17:43:39,852 - DEBUG - Taking top 8 variants by coverage in window 9:66882313-66882314
2012-10-07 17:43:40,587 - DEBUG - Taking top 8 variants by coverage in window 9:66898092-66898098
2012-10-07 17:43:40,618 - DEBUG - Taking top 8 variants by coverage in window 9:66898325-66898326
2012-10-07 17:43:41,868 - DEBUG - Taking top 8 variants by coverage in window 9:66909473-66909475
2012-10-07 17:43:42,505 - DEBUG - Taking top 8 variants by coverage in window 9:66914111-66914120
2012-10-07 17:43:42,598 - DEBUG - Taking top 8 variants by coverage in window 9:66915397-66915398
2012-10-07 17:43:42,753 - DEBUG - Taking top 8 variants by coverage in window 9:66916515-66916519
2012-10-07 17:43:43,056 - DEBUG - Taking top 8 variants by coverage in window 9:66918040-66918041
2012-10-07 17:43:44,080 - DEBUG - Taking top 8 variants by coverage in window 9:66929245-66929257
2012-10-07 17:43:45,385 - DEBUG - Taking top 8 variants by coverage in window 9:66943157-66943158
2012-10-07 17:43:45,619 - DEBUG - Taking top 8 variants by coverage in window 9:66945066-66945082
2012-10-07 17:43:45,701 - DEBUG - Taking top 8 variants by coverage in window 9:66945133-66945134
2012-10-07 17:43:45,762 - DEBUG - Taking top 8 variants by coverage in window 9:66945606-66945607
2012-10-07 17:43:46,214 - DEBUG - Taking top 8 variants by coverage in window 9:66949606-66949608
2012-10-07 17:43:46,582 - DEBUG - Taking top 8 variants by coverage in window 9:66953066-66953067
2012-10-07 17:43:46,650 - DEBUG - Taking top 8 variants by coverage in window 9:66953632-66953636
2012-10-07 17:43:46,850 - DEBUG - Taking top 8 variants by coverage in window 9:66955063-66955068
2012-10-07 17:43:46,999 - DEBUG - Taking top 8 variants by coverage in window 9:66955159-66955160
2012-10-07 17:43:47,282 - DEBUG - Taking top 8 variants by coverage in window 9:66959694-66959695
2012-10-07 17:43:48,109 - DEBUG - Taking top 8 variants by coverage in window 9:66971048-66971049
2012-10-07 17:43:48,429 - DEBUG - Taking top 8 variants by coverage in window 9:66972514-66972515
2012-10-07 17:43:48,554 - DEBUG - Taking top 8 variants by coverage in window 9:66973819-66973820
2012-10-07 17:43:48,704 - DEBUG - Taking top 8 variants by coverage in window 9:66975001-66975003
2012-10-07 17:43:49,347 - DEBUG - Taking top 8 variants by coverage in window 9:66979478-66979479
2012-10-07 17:43:50,305 - DEBUG - Taking top 8 variants by coverage in window 9:66986286-66986288
2012-10-07 17:43:50,679 - DEBUG - Taking top 8 variants by coverage in window 9:66990662-66990663
2012-10-07 17:43:51,163 - DEBUG - Taking top 8 variants by coverage in window 9:66996070-66996077
2012-10-07 17:43:52,638 - DEBUG - Read 100865 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 17:43:52,890 - DEBUG - Read 108436 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 17:43:53,157 - DEBUG - Read 125251 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 17:43:53,478 - DEBUG - Read 127930 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 17:43:53,768 - DEBUG - Read 120329 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 17:43:54,026 - DEBUG - Read 114739 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 17:43:54,294 - DEBUG - Read 121846 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 17:43:54,559 - DEBUG - Read 111461 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 17:43:54,806 - DEBUG - Read 105804 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 17:43:55,057 - DEBUG - Read 105495 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 17:43:55,325 - DEBUG - Read 116552 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 17:43:55,569 - DEBUG - Read 108778 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 17:43:55,821 - DEBUG - Read 108236 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 17:43:56,073 - DEBUG - Read 118017 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 17:43:56,352 - DEBUG - Read 127704 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 17:43:56,588 - DEBUG - Read 97901 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 17:43:56,846 - DEBUG - Read 121265 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 17:43:57,116 - DEBUG - Read 117540 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 17:43:57,344 - DEBUG - Read 101408 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 17:43:57,591 - DEBUG - Read 101247 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 17:43:57,705 - DEBUG - Detected 24724 variants in 100865 reads
2012-10-07 17:43:57,882 - DEBUG - Detected 35788 variants in 108436 reads
2012-10-07 17:43:58,113 - DEBUG - Detected 43877 variants in 125251 reads
2012-10-07 17:43:58,384 - DEBUG - Detected 55694 variants in 127930 reads
2012-10-07 17:43:58,696 - DEBUG - Detected 62830 variants in 120329 reads
2012-10-07 17:43:59,038 - DEBUG - Detected 70153 variants in 114739 reads
2012-10-07 17:43:59,461 - DEBUG - Detected 84146 variants in 121846 reads
2012-10-07 17:43:59,910 - DEBUG - Detected 90183 variants in 111461 reads
2012-10-07 17:44:00,374 - DEBUG - Detected 95967 variants in 105804 reads
2012-10-07 17:44:00,870 - DEBUG - Detected 100899 variants in 105495 reads
2012-10-07 17:44:01,398 - DEBUG - Detected 105693 variants in 116552 reads
2012-10-07 17:44:01,940 - DEBUG - Detected 110026 variants in 108778 reads
2012-10-07 17:44:02,559 - DEBUG - Detected 116022 variants in 108236 reads
2012-10-07 17:44:03,162 - DEBUG - Detected 120645 variants in 118017 reads
2012-10-07 17:44:03,802 - DEBUG - Detected 127960 variants in 127704 reads
2012-10-07 17:44:04,445 - DEBUG - Detected 131650 variants in 97901 reads
2012-10-07 17:44:05,133 - DEBUG - Detected 135828 variants in 121265 reads
2012-10-07 17:44:05,882 - DEBUG - Detected 139781 variants in 117540 reads
2012-10-07 17:44:06,588 - DEBUG - Detected 144178 variants in 101408 reads
2012-10-07 17:44:07,306 - DEBUG - Detected 148726 variants in 101247 reads
2012-10-07 17:44:08,603 - DEBUG - Taking top 8 variants by coverage in window 9:67001802-67001803
2012-10-07 17:44:08,696 - DEBUG - Taking top 8 variants by coverage in window 9:67002429-67002430
2012-10-07 17:44:08,812 - DEBUG - Taking top 8 variants by coverage in window 9:67003407-67003408
2012-10-07 17:44:09,428 - DEBUG - Taking top 8 variants by coverage in window 9:67010386-67010387
2012-10-07 17:44:09,783 - DEBUG - Taking top 8 variants by coverage in window 9:67012853-67012854
2012-10-07 17:44:10,155 - DEBUG - Taking top 8 variants by coverage in window 9:67014846-67014847
2012-10-07 17:44:10,333 - DEBUG - Taking top 8 variants by coverage in window 9:67015985-67015986
2012-10-07 17:44:10,781 - DEBUG - Taking top 8 variants by coverage in window 9:67019366-67019367
2012-10-07 17:44:11,210 - DEBUG - Taking top 8 variants by coverage in window 9:67023036-67023037
2012-10-07 17:44:11,350 - DEBUG - Taking top 8 variants by coverage in window 9:67024422-67024423
2012-10-07 17:44:12,661 - DEBUG - Taking top 8 variants by coverage in window 9:67036991-67037003
2012-10-07 17:44:13,749 - DEBUG - Taking top 8 variants by coverage in window 9:67045466-67045468
2012-10-07 17:44:14,107 - DEBUG - Taking top 8 variants by coverage in window 9:67052811-67052812
2012-10-07 17:44:15,058 - DEBUG - Taking top 8 variants by coverage in window 9:67064716-67064717
2012-10-07 17:44:15,451 - DEBUG - Taking top 8 variants by coverage in window 9:67070145-67070149
2012-10-07 17:44:17,035 - DEBUG - Taking top 8 variants by coverage in window 9:67087729-67087730
2012-10-07 17:44:17,669 - DEBUG - Taking top 8 variants by coverage in window 9:67093738-67093739
2012-10-07 17:44:18,276 - DEBUG - Taking top 8 variants by coverage in window 9:67100722-67100723
2012-10-07 17:44:18,889 - DEBUG - Taking top 8 variants by coverage in window 9:67109561-67109562
2012-10-07 17:44:18,913 - DEBUG - Taking top 8 variants by coverage in window 9:67109581-67109582
2012-10-07 17:44:19,094 - DEBUG - Taking top 8 variants by coverage in window 9:67111871-67111872
2012-10-07 17:44:19,667 - DEBUG - Taking top 8 variants by coverage in window 9:67121954-67121960
2012-10-07 17:44:20,839 - DEBUG - Taking top 8 variants by coverage in window 9:67135188-67135189
2012-10-07 17:44:22,621 - DEBUG - Taking top 8 variants by coverage in window 9:67163905-67163906
2012-10-07 17:44:22,654 - DEBUG - Taking top 8 variants by coverage in window 9:67163919-67163920
2012-10-07 17:44:22,703 - DEBUG - Taking top 8 variants by coverage in window 9:67164106-67164107
2012-10-07 17:44:23,558 - DEBUG - Taking top 8 variants by coverage in window 9:67172352-67172356
2012-10-07 17:44:23,678 - DEBUG - Taking top 8 variants by coverage in window 9:67173297-67173301
2012-10-07 17:44:23,808 - DEBUG - Taking top 8 variants by coverage in window 9:67173557-67173563
2012-10-07 17:44:24,742 - DEBUG - Taking top 8 variants by coverage in window 9:67183153-67183154
2012-10-07 17:44:24,836 - DEBUG - Taking top 8 variants by coverage in window 9:67184482-67184483
2012-10-07 17:44:26,019 - DEBUG - Taking top 8 variants by coverage in window 9:67197939-67197940
2012-10-07 17:44:26,420 - DEBUG - Taking top 8 variants by coverage in window 9:67203721-67203722
2012-10-07 17:44:26,837 - DEBUG - Taking top 8 variants by coverage in window 9:67210047-67210054
2012-10-07 17:44:27,435 - DEBUG - Taking top 8 variants by coverage in window 9:67214217-67214218
2012-10-07 17:44:27,774 - DEBUG - Taking top 8 variants by coverage in window 9:67217837-67217838
2012-10-07 17:44:27,872 - DEBUG - Taking top 8 variants by coverage in window 9:67218158-67218160
2012-10-07 17:44:28,043 - DEBUG - Taking top 8 variants by coverage in window 9:67218183-67218184
2012-10-07 17:44:28,120 - DEBUG - Taking top 8 variants by coverage in window 9:67218208-67218210
2012-10-07 17:44:28,455 - DEBUG - Taking top 8 variants by coverage in window 9:67222822-67222823
2012-10-07 17:44:29,001 - DEBUG - Taking top 8 variants by coverage in window 9:67229225-67229233
2012-10-07 17:44:29,901 - DEBUG - Taking top 8 variants by coverage in window 9:67237096-67237102
2012-10-07 17:44:31,088 - DEBUG - Taking top 8 variants by coverage in window 9:67247851-67247852
2012-10-07 17:44:31,294 - DEBUG - Taking top 8 variants by coverage in window 9:67249369-67249370
2012-10-07 17:44:32,622 - DEBUG - Taking top 8 variants by coverage in window 9:67262284-67262285
2012-10-07 17:44:32,937 - DEBUG - Taking top 8 variants by coverage in window 9:67265658-67265660
2012-10-07 17:44:33,494 - DEBUG - Taking top 8 variants by coverage in window 9:67271506-67271509
2012-10-07 17:44:33,512 - DEBUG - Taking top 8 variants by coverage in window 9:67271510-67271514
2012-10-07 17:44:34,937 - DEBUG - Taking top 8 variants by coverage in window 9:67284199-67284200
2012-10-07 17:44:35,058 - DEBUG - Taking top 8 variants by coverage in window 9:67284966-67284967
2012-10-07 17:44:35,292 - DEBUG - Taking top 8 variants by coverage in window 9:67286655-67286665
2012-10-07 17:44:36,364 - DEBUG - Taking top 8 variants by coverage in window 9:67297585-67297586
2012-10-07 17:44:36,388 - DEBUG - Taking top 8 variants by coverage in window 9:67297780-67297781
2012-10-07 17:44:36,441 - DEBUG - Taking top 8 variants by coverage in window 9:67297907-67297908
2012-10-07 17:44:36,558 - DEBUG - Taking top 8 variants by coverage in window 9:67299564-67299565
2012-10-07 17:44:36,715 - DEBUG - Taking top 8 variants by coverage in window 9:67301302-67301303
2012-10-07 17:44:36,963 - DEBUG - Taking top 8 variants by coverage in window 9:67303520-67303521
2012-10-07 17:44:37,136 - DEBUG - Taking top 8 variants by coverage in window 9:67305986-67305987
2012-10-07 17:44:37,192 - DEBUG - Taking top 8 variants by coverage in window 9:67306015-67306016
2012-10-07 17:44:37,632 - DEBUG - Taking top 8 variants by coverage in window 9:67310938-67310940
2012-10-07 17:44:37,743 - DEBUG - Taking top 8 variants by coverage in window 9:67311079-67311081
2012-10-07 17:44:37,757 - DEBUG - Taking top 8 variants by coverage in window 9:67311092-67311093
2012-10-07 17:44:38,282 - DEBUG - Taking top 8 variants by coverage in window 9:67318886-67318887
2012-10-07 17:44:38,470 - DEBUG - Taking top 8 variants by coverage in window 9:67319809-67319810
2012-10-07 17:44:38,496 - DEBUG - Taking top 8 variants by coverage in window 9:67319824-67319826
2012-10-07 17:44:39,398 - DEBUG - Taking top 8 variants by coverage in window 9:67329047-67329048
2012-10-07 17:44:39,885 - DEBUG - Taking top 8 variants by coverage in window 9:67335897-67335898
2012-10-07 17:44:39,929 - DEBUG - Taking top 8 variants by coverage in window 9:67335936-67335937
2012-10-07 17:44:40,090 - DEBUG - Taking top 8 variants by coverage in window 9:67336963-67336964
2012-10-07 17:44:40,256 - DEBUG - Taking top 8 variants by coverage in window 9:67338615-67338617
2012-10-07 17:44:40,375 - DEBUG - Taking top 8 variants by coverage in window 9:67339371-67339372
2012-10-07 17:44:40,982 - DEBUG - Taking top 8 variants by coverage in window 9:67345644-67345645
2012-10-07 17:44:41,999 - DEBUG - Taking top 8 variants by coverage in window 9:67351309-67351310
2012-10-07 17:44:42,072 - DEBUG - Taking top 8 variants by coverage in window 9:67351663-67351665
2012-10-07 17:44:42,110 - DEBUG - Taking top 8 variants by coverage in window 9:67351667-67351668
2012-10-07 17:44:42,148 - DEBUG - Taking top 8 variants by coverage in window 9:67351687-67351688
2012-10-07 17:44:42,326 - DEBUG - Taking top 8 variants by coverage in window 9:67353544-67353545
2012-10-07 17:44:42,547 - DEBUG - Taking top 8 variants by coverage in window 9:67356449-67356450
2012-10-07 17:44:42,556 - DEBUG - Taking top 8 variants by coverage in window 9:67356455-67356456
2012-10-07 17:44:42,629 - DEBUG - Taking top 8 variants by coverage in window 9:67357197-67357198
2012-10-07 17:44:43,214 - DEBUG - Taking top 8 variants by coverage in window 9:67363202-67363203
2012-10-07 17:44:43,590 - DEBUG - Taking top 8 variants by coverage in window 9:67365470-67365471
2012-10-07 17:44:43,660 - DEBUG - Taking top 8 variants by coverage in window 9:67365673-67365674
2012-10-07 17:44:45,459 - DEBUG - Taking top 8 variants by coverage in window 9:67381641-67381643
2012-10-07 17:44:46,215 - DEBUG - Taking top 8 variants by coverage in window 9:67386296-67386297
2012-10-07 17:44:46,718 - DEBUG - Taking top 8 variants by coverage in window 9:67391388-67391391
2012-10-07 17:44:46,912 - DEBUG - Taking top 8 variants by coverage in window 9:67392089-67392090
2012-10-07 17:44:46,937 - DEBUG - Taking top 8 variants by coverage in window 9:67392121-67392122
2012-10-07 17:44:47,222 - DEBUG - Taking top 8 variants by coverage in window 9:67398253-67398261
2012-10-07 17:44:48,293 - DEBUG - Taking top 8 variants by coverage in window 9:67410627-67410628
2012-10-07 17:44:48,616 - DEBUG - Taking top 8 variants by coverage in window 9:67413514-67413515
2012-10-07 17:44:48,717 - DEBUG - Taking top 8 variants by coverage in window 9:67414152-67414153
2012-10-07 17:44:49,177 - DEBUG - Taking top 8 variants by coverage in window 9:67418724-67418728
2012-10-07 17:44:49,844 - DEBUG - Taking top 8 variants by coverage in window 9:67425206-67425207
2012-10-07 17:44:49,986 - DEBUG - Taking top 8 variants by coverage in window 9:67426934-67426935
2012-10-07 17:44:50,007 - DEBUG - Taking top 8 variants by coverage in window 9:67426944-67426945
2012-10-07 17:44:52,177 - DEBUG - Taking top 8 variants by coverage in window 9:67447568-67447569
2012-10-07 17:44:52,442 - DEBUG - Taking top 8 variants by coverage in window 9:67450040-67450047
2012-10-07 17:44:52,745 - DEBUG - Taking top 8 variants by coverage in window 9:67453548-67453552
2012-10-07 17:44:53,841 - DEBUG - Taking top 8 variants by coverage in window 9:67471018-67471024
2012-10-07 17:44:54,023 - DEBUG - Taking top 8 variants by coverage in window 9:67471047-67471050
2012-10-07 17:44:54,494 - DEBUG - Taking top 8 variants by coverage in window 9:67476504-67476505
2012-10-07 17:44:54,523 - DEBUG - Taking top 8 variants by coverage in window 9:67476537-67476538
2012-10-07 17:44:55,250 - DEBUG - Taking top 8 variants by coverage in window 9:67490932-67490933
2012-10-07 17:44:55,263 - DEBUG - Taking top 8 variants by coverage in window 9:67490933-67490934
2012-10-07 17:44:55,541 - DEBUG - Taking top 8 variants by coverage in window 9:67492883-67492884
2012-10-07 17:44:55,897 - DEBUG - Taking top 8 variants by coverage in window 9:67496260-67496262
2012-10-07 17:44:56,286 - DEBUG - Taking top 8 variants by coverage in window 9:67499537-67499538
2012-10-07 17:44:56,439 - DEBUG - Taking top 8 variants by coverage in window 9:67501401-67501402
2012-10-07 17:44:56,488 - DEBUG - Taking top 8 variants by coverage in window 9:67501429-67501431
2012-10-07 17:44:56,565 - DEBUG - Taking top 8 variants by coverage in window 9:67501735-67501736
2012-10-07 17:44:56,926 - DEBUG - Taking top 8 variants by coverage in window 9:67507784-67507785
2012-10-07 17:44:56,938 - DEBUG - Taking top 8 variants by coverage in window 9:67507819-67507820
2012-10-07 17:44:57,764 - DEBUG - Taking top 8 variants by coverage in window 9:67511143-67511145
2012-10-07 17:44:57,811 - DEBUG - Taking top 8 variants by coverage in window 9:67511167-67511168
2012-10-07 17:44:57,890 - DEBUG - Taking top 8 variants by coverage in window 9:67511671-67511672
2012-10-07 17:44:58,021 - DEBUG - Taking top 8 variants by coverage in window 9:67512566-67512567
2012-10-07 17:44:58,174 - DEBUG - Taking top 8 variants by coverage in window 9:67513463-67513464
2012-10-07 17:44:58,296 - DEBUG - Taking top 8 variants by coverage in window 9:67514240-67514241
2012-10-07 17:44:58,341 - DEBUG - Taking top 8 variants by coverage in window 9:67514261-67514262
2012-10-07 17:44:58,635 - DEBUG - Taking top 8 variants by coverage in window 9:67518200-67518201
2012-10-07 17:44:58,657 - DEBUG - Taking top 8 variants by coverage in window 9:67518215-67518219
2012-10-07 17:44:58,720 - DEBUG - Taking top 8 variants by coverage in window 9:67518292-67518293
2012-10-07 17:44:58,842 - DEBUG - Taking top 8 variants by coverage in window 9:67519813-67519814
2012-10-07 17:45:00,313 - DEBUG - Taking top 8 variants by coverage in window 9:67529851-67529852
2012-10-07 17:45:00,629 - DEBUG - Taking top 8 variants by coverage in window 9:67531419-67531422
2012-10-07 17:45:00,755 - DEBUG - Taking top 8 variants by coverage in window 9:67531729-67531730
2012-10-07 17:45:01,563 - DEBUG - Taking top 8 variants by coverage in window 9:67540239-67540251
2012-10-07 17:45:01,678 - DEBUG - Taking top 8 variants by coverage in window 9:67541191-67541192
2012-10-07 17:45:02,055 - DEBUG - Taking top 8 variants by coverage in window 9:67551478-67551479
2012-10-07 17:45:02,412 - DEBUG - Taking top 8 variants by coverage in window 9:67558896-67558897
2012-10-07 17:45:02,489 - DEBUG - Taking top 8 variants by coverage in window 9:67561211-67561212
2012-10-07 17:45:03,007 - DEBUG - Taking top 8 variants by coverage in window 9:67578215-67578216
2012-10-07 17:45:03,228 - DEBUG - Taking top 8 variants by coverage in window 9:67588165-67588166
2012-10-07 17:45:04,270 - DEBUG - Taking top 8 variants by coverage in window 9:67610812-67610813
2012-10-07 17:45:04,510 - DEBUG - Taking top 8 variants by coverage in window 9:67613373-67613379
2012-10-07 17:45:04,746 - DEBUG - Taking top 8 variants by coverage in window 9:67615361-67615362
2012-10-07 17:45:04,880 - DEBUG - Taking top 8 variants by coverage in window 9:67617447-67617450
2012-10-07 17:45:05,017 - DEBUG - Taking top 8 variants by coverage in window 9:67617508-67617513
2012-10-07 17:45:05,722 - DEBUG - Taking top 8 variants by coverage in window 9:67625472-67625477
2012-10-07 17:45:06,055 - DEBUG - Taking top 8 variants by coverage in window 9:67627081-67627086
2012-10-07 17:45:06,530 - DEBUG - Taking top 8 variants by coverage in window 9:67632145-67632146
2012-10-07 17:45:07,306 - DEBUG - Taking top 8 variants by coverage in window 9:67637885-67637886
2012-10-07 17:45:07,937 - DEBUG - Taking top 8 variants by coverage in window 9:67643678-67643680
2012-10-07 17:45:07,984 - DEBUG - Taking top 8 variants by coverage in window 9:67644218-67644219
2012-10-07 17:45:08,325 - DEBUG - Taking top 8 variants by coverage in window 9:67647586-67647588
2012-10-07 17:45:08,896 - DEBUG - Taking top 8 variants by coverage in window 9:67652981-67653007
2012-10-07 17:45:09,066 - DEBUG - Taking top 8 variants by coverage in window 9:67653652-67653664
2012-10-07 17:45:09,232 - DEBUG - Taking top 8 variants by coverage in window 9:67654607-67654613
2012-10-07 17:45:09,441 - DEBUG - Taking top 8 variants by coverage in window 9:67655507-67655508
2012-10-07 17:45:10,038 - DEBUG - Taking top 8 variants by coverage in window 9:67661300-67661302
2012-10-07 17:45:10,065 - DEBUG - Taking top 8 variants by coverage in window 9:67661509-67661510
2012-10-07 17:45:10,118 - DEBUG - Taking top 8 variants by coverage in window 9:67661999-67662000
2012-10-07 17:45:10,313 - DEBUG - Taking top 8 variants by coverage in window 9:67663553-67663557
2012-10-07 17:45:10,328 - DEBUG - Taking top 8 variants by coverage in window 9:67663559-67663560
2012-10-07 17:45:11,726 - DEBUG - Taking top 8 variants by coverage in window 9:67684147-67684148
2012-10-07 17:45:12,144 - DEBUG - Taking top 8 variants by coverage in window 9:67688010-67688011
2012-10-07 17:45:12,297 - DEBUG - Taking top 8 variants by coverage in window 9:67690578-67690579
2012-10-07 17:45:12,528 - DEBUG - Taking top 8 variants by coverage in window 9:67693023-67693024
2012-10-07 17:45:13,290 - DEBUG - Taking top 8 variants by coverage in window 9:67700034-67700035
2012-10-07 17:45:13,541 - DEBUG - Taking top 8 variants by coverage in window 9:67702221-67702222
2012-10-07 17:45:13,653 - DEBUG - Taking top 8 variants by coverage in window 9:67703109-67703110
2012-10-07 17:45:13,754 - DEBUG - Taking top 8 variants by coverage in window 9:67704159-67704161
2012-10-07 17:45:14,802 - DEBUG - Taking top 8 variants by coverage in window 9:67713262-67713269
2012-10-07 17:45:17,018 - DEBUG - Taking top 8 variants by coverage in window 9:67722025-67722026
2012-10-07 17:45:17,992 - DEBUG - Taking top 8 variants by coverage in window 9:67731955-67731956
2012-10-07 17:45:18,801 - DEBUG - Taking top 8 variants by coverage in window 9:67739344-67739345
2012-10-07 17:45:19,572 - DEBUG - Taking top 8 variants by coverage in window 9:67748816-67748817
2012-10-07 17:45:20,584 - DEBUG - Taking top 8 variants by coverage in window 9:67758641-67758642
2012-10-07 17:45:20,738 - DEBUG - Taking top 8 variants by coverage in window 9:67761375-67761376
2012-10-07 17:45:20,923 - DEBUG - Taking top 8 variants by coverage in window 9:67762908-67762909
2012-10-07 17:45:21,636 - DEBUG - Taking top 8 variants by coverage in window 9:67772822-67772823
2012-10-07 17:45:21,915 - DEBUG - Taking top 8 variants by coverage in window 9:67777126-67777127
2012-10-07 17:45:22,042 - DEBUG - Taking top 8 variants by coverage in window 9:67777517-67777518
2012-10-07 17:45:22,063 - DEBUG - Taking top 8 variants by coverage in window 9:67777520-67777523
2012-10-07 17:45:23,017 - DEBUG - Taking top 8 variants by coverage in window 9:67786552-67786553
2012-10-07 17:45:23,072 - DEBUG - Taking top 8 variants by coverage in window 9:67786603-67786604
2012-10-07 17:45:23,269 - DEBUG - Taking top 8 variants by coverage in window 9:67788634-67788641
2012-10-07 17:45:23,460 - DEBUG - Taking top 8 variants by coverage in window 9:67789278-67789279
2012-10-07 17:45:23,526 - DEBUG - Taking top 8 variants by coverage in window 9:67789774-67789775
2012-10-07 17:45:23,624 - DEBUG - Taking top 8 variants by coverage in window 9:67790854-67790863
2012-10-07 17:45:24,648 - DEBUG - Taking top 8 variants by coverage in window 9:67804822-67804823
2012-10-07 17:45:24,720 - DEBUG - Taking top 8 variants by coverage in window 9:67806027-67806028
2012-10-07 17:45:24,871 - DEBUG - Taking top 8 variants by coverage in window 9:67808453-67808454
2012-10-07 17:45:27,246 - DEBUG - Taking top 8 variants by coverage in window 9:67843816-67843817
2012-10-07 17:45:27,705 - DEBUG - Taking top 8 variants by coverage in window 9:67852617-67852618
2012-10-07 17:45:27,861 - DEBUG - Taking top 8 variants by coverage in window 9:67853803-67853804
2012-10-07 17:45:27,887 - DEBUG - Taking top 8 variants by coverage in window 9:67853808-67853810
2012-10-07 17:45:27,975 - DEBUG - Taking top 8 variants by coverage in window 9:67854141-67854142
2012-10-07 17:45:28,594 - DEBUG - Taking top 8 variants by coverage in window 9:67859716-67859717
2012-10-07 17:45:28,812 - DEBUG - Taking top 8 variants by coverage in window 9:67861502-67861503
2012-10-07 17:45:29,973 - DEBUG - Taking top 8 variants by coverage in window 9:67873756-67873757
2012-10-07 17:45:29,990 - DEBUG - Taking top 8 variants by coverage in window 9:67873758-67873759
2012-10-07 17:45:30,790 - DEBUG - Taking top 8 variants by coverage in window 9:67884749-67884760
2012-10-07 17:45:31,208 - DEBUG - Taking top 8 variants by coverage in window 9:67888644-67888645
2012-10-07 17:45:31,284 - DEBUG - Taking top 8 variants by coverage in window 9:67889484-67889485
2012-10-07 17:45:31,383 - DEBUG - Taking top 8 variants by coverage in window 9:67891381-67891384
2012-10-07 17:45:31,871 - DEBUG - Taking top 8 variants by coverage in window 9:67896552-67896558
2012-10-07 17:45:32,174 - DEBUG - Taking top 8 variants by coverage in window 9:67899880-67899881
2012-10-07 17:45:32,260 - DEBUG - Taking top 8 variants by coverage in window 9:67900942-67900943
2012-10-07 17:45:33,478 - DEBUG - Taking top 8 variants by coverage in window 9:67917887-67917888
2012-10-07 17:45:33,568 - DEBUG - Taking top 8 variants by coverage in window 9:67918796-67918797
2012-10-07 17:45:33,707 - DEBUG - Taking top 8 variants by coverage in window 9:67920821-67920822
2012-10-07 17:45:33,756 - DEBUG - Taking top 8 variants by coverage in window 9:67921185-67921186
2012-10-07 17:45:34,229 - DEBUG - Taking top 8 variants by coverage in window 9:67926805-67926807
2012-10-07 17:45:34,699 - DEBUG - Taking top 8 variants by coverage in window 9:67931216-67931217
2012-10-07 17:45:34,746 - DEBUG - Taking top 8 variants by coverage in window 9:67931598-67931599
2012-10-07 17:45:35,237 - DEBUG - Taking top 8 variants by coverage in window 9:67938361-67938362
2012-10-07 17:45:35,318 - DEBUG - Taking top 8 variants by coverage in window 9:67939389-67939390
2012-10-07 17:45:36,477 - DEBUG - Taking top 8 variants by coverage in window 9:67954481-67954484
2012-10-07 17:45:36,860 - DEBUG - Taking top 8 variants by coverage in window 9:67958460-67958461
2012-10-07 17:45:38,010 - DEBUG - Taking top 8 variants by coverage in window 9:67971358-67971360
2012-10-07 17:45:38,540 - DEBUG - Taking top 8 variants by coverage in window 9:67977550-67977570
2012-10-07 17:45:38,817 - DEBUG - Taking top 8 variants by coverage in window 9:67981208-67981215
2012-10-07 17:45:39,162 - DEBUG - Taking top 8 variants by coverage in window 9:67984335-67984336
2012-10-07 17:45:39,198 - DEBUG - Taking top 8 variants by coverage in window 9:67984866-67984867
2012-10-07 17:45:39,951 - DEBUG - Taking top 8 variants by coverage in window 9:67993512-67993513
2012-10-07 17:45:40,945 - DEBUG - Read 99503 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 17:45:41,194 - DEBUG - Read 106989 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 17:45:41,460 - DEBUG - Read 123449 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 17:45:41,758 - DEBUG - Read 125239 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 17:45:42,044 - DEBUG - Read 118056 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 17:45:42,300 - DEBUG - Read 112546 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 17:45:42,563 - DEBUG - Read 118127 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 17:45:42,826 - DEBUG - Read 108122 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 17:45:43,085 - DEBUG - Read 103781 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 17:45:43,362 - DEBUG - Read 103005 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 17:45:43,627 - DEBUG - Read 115112 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 17:45:43,863 - DEBUG - Read 103741 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 17:45:44,113 - DEBUG - Read 106124 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 17:45:44,360 - DEBUG - Read 115546 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 17:45:44,635 - DEBUG - Read 125491 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 17:45:44,868 - DEBUG - Read 96317 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 17:45:45,124 - DEBUG - Read 120240 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 17:45:45,388 - DEBUG - Read 114507 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 17:45:45,614 - DEBUG - Read 99906 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 17:45:45,856 - DEBUG - Read 98944 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 17:45:45,960 - DEBUG - Detected 23024 variants in 99503 reads
2012-10-07 17:45:46,124 - DEBUG - Detected 33302 variants in 106989 reads
2012-10-07 17:45:46,340 - DEBUG - Detected 40914 variants in 123449 reads
2012-10-07 17:45:46,589 - DEBUG - Detected 50156 variants in 125239 reads
2012-10-07 17:45:46,872 - DEBUG - Detected 57591 variants in 118056 reads
2012-10-07 17:45:47,215 - DEBUG - Detected 64735 variants in 112546 reads
2012-10-07 17:45:47,572 - DEBUG - Detected 78401 variants in 118127 reads
2012-10-07 17:45:47,982 - DEBUG - Detected 83728 variants in 108122 reads
2012-10-07 17:45:48,417 - DEBUG - Detected 89779 variants in 103781 reads
2012-10-07 17:45:48,873 - DEBUG - Detected 94769 variants in 103005 reads
2012-10-07 17:45:49,364 - DEBUG - Detected 99386 variants in 115112 reads
2012-10-07 17:45:49,930 - DEBUG - Detected 103913 variants in 103741 reads
2012-10-07 17:45:50,458 - DEBUG - Detected 108317 variants in 106124 reads
2012-10-07 17:45:51,018 - DEBUG - Detected 112910 variants in 115546 reads
2012-10-07 17:45:51,609 - DEBUG - Detected 120711 variants in 125491 reads
2012-10-07 17:45:52,209 - DEBUG - Detected 124753 variants in 96317 reads
2012-10-07 17:45:52,853 - DEBUG - Detected 128695 variants in 120240 reads
2012-10-07 17:45:53,574 - DEBUG - Detected 132852 variants in 114507 reads
2012-10-07 17:45:54,241 - DEBUG - Detected 137004 variants in 99906 reads
2012-10-07 17:45:54,920 - DEBUG - Detected 141444 variants in 98944 reads
2012-10-07 17:45:56,227 - DEBUG - Taking top 8 variants by coverage in window 9:68002674-68002675
2012-10-07 17:45:56,531 - DEBUG - Taking top 8 variants by coverage in window 9:68008146-68008147
2012-10-07 17:45:57,124 - DEBUG - Taking top 8 variants by coverage in window 9:68021340-68021342
2012-10-07 17:45:57,214 - DEBUG - Taking top 8 variants by coverage in window 9:68021727-68021739
2012-10-07 17:45:58,207 - DEBUG - Taking top 8 variants by coverage in window 9:68030943-68030945
2012-10-07 17:45:58,257 - DEBUG - Taking top 8 variants by coverage in window 9:68034127-68034134
2012-10-07 17:45:58,799 - DEBUG - Taking top 8 variants by coverage in window 9:68040849-68040850
2012-10-07 17:45:59,222 - DEBUG - Taking top 8 variants by coverage in window 9:68049461-68049462
2012-10-07 17:45:59,459 - DEBUG - Taking top 8 variants by coverage in window 9:68053716-68053717
2012-10-07 17:45:59,494 - DEBUG - Taking top 8 variants by coverage in window 9:68053779-68053780
2012-10-07 17:45:59,563 - DEBUG - Taking top 8 variants by coverage in window 9:68054485-68054486
2012-10-07 17:45:59,646 - DEBUG - Taking top 8 variants by coverage in window 9:68054797-68054798
2012-10-07 17:45:59,666 - DEBUG - Taking top 8 variants by coverage in window 9:68054800-68054802
2012-10-07 17:45:59,986 - DEBUG - Taking top 8 variants by coverage in window 9:68058649-68058650
2012-10-07 17:46:00,103 - DEBUG - Taking top 8 variants by coverage in window 9:68060450-68060451
2012-10-07 17:46:00,567 - DEBUG - Taking top 8 variants by coverage in window 9:68066199-68066200
2012-10-07 17:46:00,816 - DEBUG - Taking top 8 variants by coverage in window 9:68069622-68069624
2012-10-07 17:46:01,002 - DEBUG - Taking top 8 variants by coverage in window 9:68072536-68072537
2012-10-07 17:46:01,646 - DEBUG - Taking top 8 variants by coverage in window 9:68082036-68082037
2012-10-07 17:46:01,948 - DEBUG - Taking top 8 variants by coverage in window 9:68085169-68085171
2012-10-07 17:46:02,026 - DEBUG - Taking top 8 variants by coverage in window 9:68085286-68085287
2012-10-07 17:46:02,154 - DEBUG - Taking top 8 variants by coverage in window 9:68086943-68086944
2012-10-07 17:46:02,755 - DEBUG - Taking top 8 variants by coverage in window 9:68094240-68094241
2012-10-07 17:46:02,819 - DEBUG - Taking top 8 variants by coverage in window 9:68094371-68094383
2012-10-07 17:46:02,866 - DEBUG - Taking top 8 variants by coverage in window 9:68094435-68094441
2012-10-07 17:46:03,009 - DEBUG - Taking top 8 variants by coverage in window 9:68095230-68095236
2012-10-07 17:46:03,147 - DEBUG - Taking top 8 variants by coverage in window 9:68096244-68096245
2012-10-07 17:46:03,197 - DEBUG - Taking top 8 variants by coverage in window 9:68097145-68097146
2012-10-07 17:46:03,208 - DEBUG - Taking top 8 variants by coverage in window 9:68097149-68097152
2012-10-07 17:46:03,343 - DEBUG - Taking top 8 variants by coverage in window 9:68097830-68097831
2012-10-07 17:46:03,534 - DEBUG - Taking top 8 variants by coverage in window 9:68100821-68100822
2012-10-07 17:46:03,580 - DEBUG - Taking top 8 variants by coverage in window 9:68100849-68100850
2012-10-07 17:46:03,870 - DEBUG - Taking top 8 variants by coverage in window 9:68103087-68103088
2012-10-07 17:46:03,927 - DEBUG - Taking top 8 variants by coverage in window 9:68103410-68103411
2012-10-07 17:46:04,026 - DEBUG - Taking top 8 variants by coverage in window 9:68104811-68104812
2012-10-07 17:46:04,510 - DEBUG - Taking top 8 variants by coverage in window 9:68109690-68109695
2012-10-07 17:46:05,328 - DEBUG - Taking top 8 variants by coverage in window 9:68118017-68118023
2012-10-07 17:46:05,643 - DEBUG - Taking top 8 variants by coverage in window 9:68120766-68120767
2012-10-07 17:46:05,965 - DEBUG - Taking top 8 variants by coverage in window 9:68122753-68122757
2012-10-07 17:46:06,014 - DEBUG - Taking top 8 variants by coverage in window 9:68122779-68122780
2012-10-07 17:46:06,816 - DEBUG - Taking top 8 variants by coverage in window 9:68132524-68132525
2012-10-07 17:46:07,008 - DEBUG - Taking top 8 variants by coverage in window 9:68135167-68135171
2012-10-07 17:46:07,083 - DEBUG - Taking top 8 variants by coverage in window 9:68136422-68136423
2012-10-07 17:46:07,310 - DEBUG - Taking top 8 variants by coverage in window 9:68139128-68139129
2012-10-07 17:46:07,643 - DEBUG - Taking top 8 variants by coverage in window 9:68143850-68143851
2012-10-07 17:46:08,528 - DEBUG - Taking top 8 variants by coverage in window 9:68160177-68160179
2012-10-07 17:46:09,201 - DEBUG - Taking top 8 variants by coverage in window 9:68169655-68169656
2012-10-07 17:46:09,938 - DEBUG - Taking top 8 variants by coverage in window 9:68176127-68176128
2012-10-07 17:46:09,973 - DEBUG - Taking top 8 variants by coverage in window 9:68176128-68176130
2012-10-07 17:46:10,246 - DEBUG - Taking top 8 variants by coverage in window 9:68177312-68177313
2012-10-07 17:46:10,418 - DEBUG - Taking top 8 variants by coverage in window 9:68179303-68179304
2012-10-07 17:46:10,613 - DEBUG - Taking top 8 variants by coverage in window 9:68183453-68183454
2012-10-07 17:46:10,623 - DEBUG - Taking top 8 variants by coverage in window 9:68183476-68183477
2012-10-07 17:46:10,714 - DEBUG - Taking top 8 variants by coverage in window 9:68186322-68186323
2012-10-07 17:46:10,925 - DEBUG - Taking top 8 variants by coverage in window 9:68190993-68190994
2012-10-07 17:46:11,334 - DEBUG - Taking top 8 variants by coverage in window 9:68195159-68195160
2012-10-07 17:46:12,172 - DEBUG - Taking top 8 variants by coverage in window 9:68214058-68214059
2012-10-07 17:46:12,467 - DEBUG - Taking top 8 variants by coverage in window 9:68219621-68219622
2012-10-07 17:46:12,774 - DEBUG - Taking top 8 variants by coverage in window 9:68221304-68221305
2012-10-07 17:46:14,891 - DEBUG - Taking top 8 variants by coverage in window 9:68248686-68248694
2012-10-07 17:46:15,602 - DEBUG - Taking top 8 variants by coverage in window 9:68261731-68261732
2012-10-07 17:46:15,641 - DEBUG - Taking top 8 variants by coverage in window 9:68262265-68262266
2012-10-07 17:46:15,677 - DEBUG - Taking top 8 variants by coverage in window 9:68263221-68263223
2012-10-07 17:46:15,939 - DEBUG - Taking top 8 variants by coverage in window 9:68268277-68268278
2012-10-07 17:46:16,403 - DEBUG - Taking top 8 variants by coverage in window 9:68273025-68273034
2012-10-07 17:46:16,958 - DEBUG - Taking top 8 variants by coverage in window 9:68279855-68279857
2012-10-07 17:46:16,985 - DEBUG - Taking top 8 variants by coverage in window 9:68279883-68279891
2012-10-07 17:46:17,250 - DEBUG - Taking top 8 variants by coverage in window 9:68283173-68283177
2012-10-07 17:46:18,452 - DEBUG - Taking top 8 variants by coverage in window 9:68298118-68298122
2012-10-07 17:46:19,873 - DEBUG - Taking top 8 variants by coverage in window 9:68321698-68321699
2012-10-07 17:46:19,916 - DEBUG - Taking top 8 variants by coverage in window 9:68322091-68322092
2012-10-07 17:46:19,950 - DEBUG - Taking top 8 variants by coverage in window 9:68322120-68322127
2012-10-07 17:46:19,999 - DEBUG - Taking top 8 variants by coverage in window 9:68322132-68322133
2012-10-07 17:46:20,011 - DEBUG - Taking top 8 variants by coverage in window 9:68322133-68322134
2012-10-07 17:46:20,022 - DEBUG - Taking top 8 variants by coverage in window 9:68322144-68322148
2012-10-07 17:46:20,087 - DEBUG - Taking top 8 variants by coverage in window 9:68322223-68322224
2012-10-07 17:46:20,339 - DEBUG - Taking top 8 variants by coverage in window 9:68324670-68324671
2012-10-07 17:46:20,365 - DEBUG - Taking top 8 variants by coverage in window 9:68324889-68324894
2012-10-07 17:46:20,736 - DEBUG - Taking top 8 variants by coverage in window 9:68328525-68328526
2012-10-07 17:46:21,035 - DEBUG - Taking top 8 variants by coverage in window 9:68331170-68331171
2012-10-07 17:46:21,122 - DEBUG - Taking top 8 variants by coverage in window 9:68331675-68331676
2012-10-07 17:46:21,871 - DEBUG - Taking top 8 variants by coverage in window 9:68341775-68341776
2012-10-07 17:46:22,760 - DEBUG - Taking top 8 variants by coverage in window 9:68359467-68359474
2012-10-07 17:46:24,167 - DEBUG - Taking top 8 variants by coverage in window 9:68387201-68387202
2012-10-07 17:46:24,581 - DEBUG - Taking top 8 variants by coverage in window 9:68392204-68392206
2012-10-07 17:46:24,662 - DEBUG - Taking top 8 variants by coverage in window 9:68392668-68392669
2012-10-07 17:46:24,860 - DEBUG - Taking top 8 variants by coverage in window 9:68395341-68395342
2012-10-07 17:46:25,317 - DEBUG - Taking top 8 variants by coverage in window 9:68401984-68401985
2012-10-07 17:46:25,466 - DEBUG - Taking top 8 variants by coverage in window 9:68402713-68402714
2012-10-07 17:46:25,584 - DEBUG - Taking top 8 variants by coverage in window 9:68403750-68403755
2012-10-07 17:46:25,745 - DEBUG - Taking top 8 variants by coverage in window 9:68404443-68404444
2012-10-07 17:46:25,821 - DEBUG - Taking top 8 variants by coverage in window 9:68404565-68404566
2012-10-07 17:46:25,975 - DEBUG - Taking top 8 variants by coverage in window 9:68405933-68405934
2012-10-07 17:46:25,984 - DEBUG - Taking top 8 variants by coverage in window 9:68405937-68405938
2012-10-07 17:46:26,239 - DEBUG - Taking top 8 variants by coverage in window 9:68408473-68408483
2012-10-07 17:46:26,742 - DEBUG - Taking top 8 variants by coverage in window 9:68414283-68414284
2012-10-07 17:46:28,409 - DEBUG - Taking top 8 variants by coverage in window 9:68432786-68432787
2012-10-07 17:46:28,508 - DEBUG - Taking top 8 variants by coverage in window 9:68434042-68434043
2012-10-07 17:46:28,625 - DEBUG - Taking top 8 variants by coverage in window 9:68434555-68434562
2012-10-07 17:46:39,142 - DEBUG - Taking top 8 variants by coverage in window 9:68434645-68434646
2012-10-07 17:46:39,315 - DEBUG - Taking top 8 variants by coverage in window 9:68438100-68438101
2012-10-07 17:46:39,485 - DEBUG - Taking top 8 variants by coverage in window 9:68439907-68439908
2012-10-07 17:46:39,575 - DEBUG - Taking top 8 variants by coverage in window 9:68440251-68440252
2012-10-07 17:46:39,656 - DEBUG - Taking top 8 variants by coverage in window 9:68440605-68440606
2012-10-07 17:46:40,018 - DEBUG - Taking top 8 variants by coverage in window 9:68445474-68445475
2012-10-07 17:46:40,411 - DEBUG - Taking top 8 variants by coverage in window 9:68453738-68453739
2012-10-07 17:46:40,721 - DEBUG - Taking top 8 variants by coverage in window 9:68458492-68458493
2012-10-07 17:46:40,786 - DEBUG - Taking top 8 variants by coverage in window 9:68458604-68458605
2012-10-07 17:46:40,813 - DEBUG - Taking top 8 variants by coverage in window 9:68458631-68458632
2012-10-07 17:46:41,552 - DEBUG - Taking top 8 variants by coverage in window 9:68472431-68472433
2012-10-07 17:46:42,011 - DEBUG - Taking top 8 variants by coverage in window 9:68477305-68477310
2012-10-07 17:46:42,537 - DEBUG - Taking top 8 variants by coverage in window 9:68487446-68487453
2012-10-07 17:46:43,516 - DEBUG - Taking top 8 variants by coverage in window 9:68504271-68504272
2012-10-07 17:46:43,533 - DEBUG - Taking top 8 variants by coverage in window 9:68504305-68504315
2012-10-07 17:46:44,545 - DEBUG - Taking top 8 variants by coverage in window 9:68514188-68514189
2012-10-07 17:46:44,735 - DEBUG - Taking top 8 variants by coverage in window 9:68515902-68515903
2012-10-07 17:46:44,865 - DEBUG - Taking top 8 variants by coverage in window 9:68517002-68517005
2012-10-07 17:46:45,017 - DEBUG - Taking top 8 variants by coverage in window 9:68519268-68519269
2012-10-07 17:46:45,203 - DEBUG - Taking top 8 variants by coverage in window 9:68520770-68520776
2012-10-07 17:46:45,632 - DEBUG - Taking top 8 variants by coverage in window 9:68526824-68526825
2012-10-07 17:46:45,892 - DEBUG - Taking top 8 variants by coverage in window 9:68528830-68528831
2012-10-07 17:46:47,135 - DEBUG - Taking top 8 variants by coverage in window 9:68541081-68541090
2012-10-07 17:46:47,666 - DEBUG - Taking top 8 variants by coverage in window 9:68548128-68548129
2012-10-07 17:46:47,706 - DEBUG - Taking top 8 variants by coverage in window 9:68548542-68548543
2012-10-07 17:46:47,754 - DEBUG - Taking top 8 variants by coverage in window 9:68548811-68548812
2012-10-07 17:46:48,511 - DEBUG - Taking top 8 variants by coverage in window 9:68560037-68560050
2012-10-07 17:46:48,621 - DEBUG - Taking top 8 variants by coverage in window 9:68560826-68560827
2012-10-07 17:46:48,999 - DEBUG - Taking top 8 variants by coverage in window 9:68562036-68562037
2012-10-07 17:46:49,224 - DEBUG - Taking top 8 variants by coverage in window 9:68562090-68562091
2012-10-07 17:46:49,383 - DEBUG - Taking top 8 variants by coverage in window 9:68563486-68563487
2012-10-07 17:46:49,506 - DEBUG - Taking top 8 variants by coverage in window 9:68564516-68564517
2012-10-07 17:46:49,980 - DEBUG - Taking top 8 variants by coverage in window 9:68571392-68571395
2012-10-07 17:46:50,060 - DEBUG - Taking top 8 variants by coverage in window 9:68571453-68571454
2012-10-07 17:46:50,200 - DEBUG - Taking top 8 variants by coverage in window 9:68574643-68574646
2012-10-07 17:46:50,249 - DEBUG - Taking top 8 variants by coverage in window 9:68574704-68574705
2012-10-07 17:46:50,908 - DEBUG - Taking top 8 variants by coverage in window 9:68583316-68583317
2012-10-07 17:46:51,016 - DEBUG - Taking top 8 variants by coverage in window 9:68584260-68584261
2012-10-07 17:46:51,052 - DEBUG - Taking top 8 variants by coverage in window 9:68584273-68584274
2012-10-07 17:46:51,150 - DEBUG - Taking top 8 variants by coverage in window 9:68585835-68585839
2012-10-07 17:46:51,206 - DEBUG - Taking top 8 variants by coverage in window 9:68585844-68585845
2012-10-07 17:46:51,236 - DEBUG - Taking top 8 variants by coverage in window 9:68585856-68585857
2012-10-07 17:46:51,290 - DEBUG - Taking top 8 variants by coverage in window 9:68585877-68585878
2012-10-07 17:46:52,170 - DEBUG - Taking top 8 variants by coverage in window 9:68595181-68595191
2012-10-07 17:46:52,450 - DEBUG - Taking top 8 variants by coverage in window 9:68595343-68595344
2012-10-07 17:46:53,114 - DEBUG - Taking top 8 variants by coverage in window 9:68603748-68603754
2012-10-07 17:46:53,125 - DEBUG - Taking top 8 variants by coverage in window 9:68603772-68603773
2012-10-07 17:46:53,323 - DEBUG - Taking top 8 variants by coverage in window 9:68606017-68606034
2012-10-07 17:47:00,084 - DEBUG - Taking top 8 variants by coverage in window 9:68609097-68609098
2012-10-07 17:47:00,484 - DEBUG - Taking top 8 variants by coverage in window 9:68615068-68615069
2012-10-07 17:47:00,509 - DEBUG - Taking top 8 variants by coverage in window 9:68615130-68615131
2012-10-07 17:47:00,870 - DEBUG - Taking top 8 variants by coverage in window 9:68620672-68620673
2012-10-07 17:47:01,611 - DEBUG - Taking top 8 variants by coverage in window 9:68631240-68631241
2012-10-07 17:47:02,218 - DEBUG - Taking top 8 variants by coverage in window 9:68642205-68642206
2012-10-07 17:47:02,463 - DEBUG - Taking top 8 variants by coverage in window 9:68646049-68646053
2012-10-07 17:47:02,983 - DEBUG - Taking top 8 variants by coverage in window 9:68651564-68651578
2012-10-07 17:47:03,070 - DEBUG - Taking top 8 variants by coverage in window 9:68652773-68652774
2012-10-07 17:47:03,639 - DEBUG - Taking top 8 variants by coverage in window 9:68661560-68661575
2012-10-07 17:47:04,017 - DEBUG - Taking top 8 variants by coverage in window 9:68665846-68665847
2012-10-07 17:47:04,358 - DEBUG - Taking top 8 variants by coverage in window 9:68670213-68670227
2012-10-07 17:47:04,512 - DEBUG - Taking top 8 variants by coverage in window 9:68672615-68672616
2012-10-07 17:47:04,588 - DEBUG - Taking top 8 variants by coverage in window 9:68673327-68673343
2012-10-07 17:47:04,795 - DEBUG - Taking top 8 variants by coverage in window 9:68676788-68676789
2012-10-07 17:47:05,230 - DEBUG - Taking top 8 variants by coverage in window 9:68683501-68683502
2012-10-07 17:47:05,565 - DEBUG - Taking top 8 variants by coverage in window 9:68687788-68687789
2012-10-07 17:47:06,227 - DEBUG - Taking top 8 variants by coverage in window 9:68692855-68692857
2012-10-07 17:47:06,635 - DEBUG - Taking top 8 variants by coverage in window 9:68696530-68696538
2012-10-07 17:47:06,654 - DEBUG - Taking top 8 variants by coverage in window 9:68696759-68696760
2012-10-07 17:47:06,975 - DEBUG - Taking top 8 variants by coverage in window 9:68701182-68701191
2012-10-07 17:47:07,152 - DEBUG - Taking top 8 variants by coverage in window 9:68704264-68704265
2012-10-07 17:47:07,383 - DEBUG - Taking top 8 variants by coverage in window 9:68708896-68708900
2012-10-07 17:47:08,230 - DEBUG - Taking top 8 variants by coverage in window 9:68727681-68727682
2012-10-07 17:47:08,330 - DEBUG - Taking top 8 variants by coverage in window 9:68730003-68730004
2012-10-07 17:47:08,454 - DEBUG - Taking top 8 variants by coverage in window 9:68733800-68733809
2012-10-07 17:47:09,080 - DEBUG - Taking top 8 variants by coverage in window 9:68744346-68744347
2012-10-07 17:47:09,277 - DEBUG - Taking top 8 variants by coverage in window 9:68744911-68744912
2012-10-07 17:47:09,300 - DEBUG - Taking top 8 variants by coverage in window 9:68744916-68744917
2012-10-07 17:47:09,978 - DEBUG - Taking top 8 variants by coverage in window 9:68754848-68754849
2012-10-07 17:47:10,429 - DEBUG - Taking top 8 variants by coverage in window 9:68757186-68757187
2012-10-07 17:47:10,668 - DEBUG - Taking top 8 variants by coverage in window 9:68761553-68761565
2012-10-07 17:47:11,022 - DEBUG - Taking top 8 variants by coverage in window 9:68766933-68766934
2012-10-07 17:47:11,043 - DEBUG - Taking top 8 variants by coverage in window 9:68767111-68767112
2012-10-07 17:47:11,822 - DEBUG - Taking top 8 variants by coverage in window 9:68776001-68776002
2012-10-07 17:47:12,354 - DEBUG - Taking top 8 variants by coverage in window 9:68781239-68781240
2012-10-07 17:47:12,586 - DEBUG - Taking top 8 variants by coverage in window 9:68783273-68783276
2012-10-07 17:47:12,916 - DEBUG - Taking top 8 variants by coverage in window 9:68789564-68789565
2012-10-07 17:47:13,380 - DEBUG - Taking top 8 variants by coverage in window 9:68797533-68797534
2012-10-07 17:47:14,409 - DEBUG - Taking top 8 variants by coverage in window 9:68809994-68809995
2012-10-07 17:47:14,620 - DEBUG - Taking top 8 variants by coverage in window 9:68813350-68813351
2012-10-07 17:47:14,769 - DEBUG - Taking top 8 variants by coverage in window 9:68815167-68815168
2012-10-07 17:47:14,794 - DEBUG - Taking top 8 variants by coverage in window 9:68815170-68815171
2012-10-07 17:47:14,954 - DEBUG - Taking top 8 variants by coverage in window 9:68816142-68816143
2012-10-07 17:47:15,375 - DEBUG - Taking top 8 variants by coverage in window 9:68823170-68823171
2012-10-07 17:47:15,491 - DEBUG - Taking top 8 variants by coverage in window 9:68825908-68825914
2012-10-07 17:47:15,525 - DEBUG - Taking top 8 variants by coverage in window 9:68825918-68825920
2012-10-07 17:47:15,666 - DEBUG - Taking top 8 variants by coverage in window 9:68826992-68826993
2012-10-07 17:47:16,008 - DEBUG - Taking top 8 variants by coverage in window 9:68832515-68832516
2012-10-07 17:47:16,530 - DEBUG - Taking top 8 variants by coverage in window 9:68837001-68837002
2012-10-07 17:47:16,807 - DEBUG - Taking top 8 variants by coverage in window 9:68838660-68838664
2012-10-07 17:47:17,197 - DEBUG - Taking top 8 variants by coverage in window 9:68841390-68841398
2012-10-07 17:47:17,267 - DEBUG - Taking top 8 variants by coverage in window 9:68841547-68841548
2012-10-07 17:47:17,376 - DEBUG - Taking top 8 variants by coverage in window 9:68842930-68842931
2012-10-07 17:47:18,127 - DEBUG - Taking top 8 variants by coverage in window 9:68851621-68851623
2012-10-07 17:47:18,321 - DEBUG - Taking top 8 variants by coverage in window 9:68853294-68853295
2012-10-07 17:47:18,679 - DEBUG - Taking top 8 variants by coverage in window 9:68858003-68858004
2012-10-07 17:47:18,699 - DEBUG - Taking top 8 variants by coverage in window 9:68858018-68858019
2012-10-07 17:47:18,879 - DEBUG - Taking top 8 variants by coverage in window 9:68861644-68861645
2012-10-07 17:47:18,907 - DEBUG - Taking top 8 variants by coverage in window 9:68861669-68861670
2012-10-07 17:47:18,964 - DEBUG - Taking top 8 variants by coverage in window 9:68862030-68862037
2012-10-07 17:47:19,289 - DEBUG - Taking top 8 variants by coverage in window 9:68865803-68865804
2012-10-07 17:47:19,351 - DEBUG - Taking top 8 variants by coverage in window 9:68866586-68866587
2012-10-07 17:47:19,366 - DEBUG - Taking top 8 variants by coverage in window 9:68866601-68866602
2012-10-07 17:47:20,046 - DEBUG - Taking top 8 variants by coverage in window 9:68879167-68879168
2012-10-07 17:47:21,332 - DEBUG - Taking top 8 variants by coverage in window 9:68898035-68898037
2012-10-07 17:47:21,699 - DEBUG - Taking top 8 variants by coverage in window 9:68904289-68904290
2012-10-07 17:47:22,025 - DEBUG - Taking top 8 variants by coverage in window 9:68908722-68908723
2012-10-07 17:47:22,051 - DEBUG - Taking top 8 variants by coverage in window 9:68908729-68908730
2012-10-07 17:47:22,499 - DEBUG - Taking top 8 variants by coverage in window 9:68914052-68914053
2012-10-07 17:47:22,564 - DEBUG - Taking top 8 variants by coverage in window 9:68914841-68914842
2012-10-07 17:47:22,585 - DEBUG - Taking top 8 variants by coverage in window 9:68914866-68914867
2012-10-07 17:47:22,598 - DEBUG - Taking top 8 variants by coverage in window 9:68914868-68914869
2012-10-07 17:47:22,610 - DEBUG - Taking top 8 variants by coverage in window 9:68914869-68914870
2012-10-07 17:47:22,754 - DEBUG - Taking top 8 variants by coverage in window 9:68915847-68915848
2012-10-07 17:47:22,910 - DEBUG - Taking top 8 variants by coverage in window 9:68917987-68917991
2012-10-07 17:47:22,978 - DEBUG - Taking top 8 variants by coverage in window 9:68918088-68918089
2012-10-07 17:47:23,233 - DEBUG - Taking top 8 variants by coverage in window 9:68923225-68923226
2012-10-07 17:47:23,282 - DEBUG - Taking top 8 variants by coverage in window 9:68923889-68923890
2012-10-07 17:47:23,422 - DEBUG - Taking top 8 variants by coverage in window 9:68928698-68928699
2012-10-07 17:47:23,850 - DEBUG - Taking top 8 variants by coverage in window 9:68933687-68933689
2012-10-07 17:47:23,914 - DEBUG - Taking top 8 variants by coverage in window 9:68933710-68933711
2012-10-07 17:47:24,320 - DEBUG - Taking top 8 variants by coverage in window 9:68938682-68938683
2012-10-07 17:47:24,513 - DEBUG - Taking top 8 variants by coverage in window 9:68941856-68941857
2012-10-07 17:47:24,747 - DEBUG - Taking top 8 variants by coverage in window 9:68943052-68943066
2012-10-07 17:47:25,428 - DEBUG - Taking top 8 variants by coverage in window 9:68951583-68951584
2012-10-07 17:47:25,598 - DEBUG - Taking top 8 variants by coverage in window 9:68954417-68954418
2012-10-07 17:47:25,728 - DEBUG - Taking top 8 variants by coverage in window 9:68956929-68956930
2012-10-07 17:47:26,205 - DEBUG - Taking top 8 variants by coverage in window 9:68964127-68964128
2012-10-07 17:47:26,365 - DEBUG - Taking top 8 variants by coverage in window 9:68966961-68966962
2012-10-07 17:47:26,745 - DEBUG - Taking top 8 variants by coverage in window 9:68970473-68970479
2012-10-07 17:47:26,824 - DEBUG - Taking top 8 variants by coverage in window 9:68970481-68970487
2012-10-07 17:47:26,938 - DEBUG - Taking top 8 variants by coverage in window 9:68971562-68971563
2012-10-07 17:47:26,975 - DEBUG - Taking top 8 variants by coverage in window 9:68971634-68971640
2012-10-07 17:47:27,408 - DEBUG - Taking top 8 variants by coverage in window 9:68978604-68978608
2012-10-07 17:47:27,424 - DEBUG - Taking top 8 variants by coverage in window 9:68978642-68978643
2012-10-07 17:47:27,542 - DEBUG - Taking top 8 variants by coverage in window 9:68978897-68978898
2012-10-07 17:47:28,593 - DEBUG - Taking top 8 variants by coverage in window 9:68992324-68992325
2012-10-07 17:47:28,605 - DEBUG - Taking top 8 variants by coverage in window 9:68992349-68992350
2012-10-07 17:47:28,960 - DEBUG - Taking top 8 variants by coverage in window 9:68996601-68996605
2012-10-07 17:47:30,189 - DEBUG - Read 100842 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 17:47:30,438 - DEBUG - Read 109187 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 17:47:30,705 - DEBUG - Read 127268 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 17:47:31,004 - DEBUG - Read 127462 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 17:47:31,288 - DEBUG - Read 119001 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 17:47:31,541 - DEBUG - Read 114043 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 17:47:31,805 - DEBUG - Read 121042 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 17:47:32,063 - DEBUG - Read 109747 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 17:47:32,312 - DEBUG - Read 104791 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 17:47:32,557 - DEBUG - Read 104642 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 17:47:32,830 - DEBUG - Read 116700 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 17:47:33,065 - DEBUG - Read 105571 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 17:47:33,311 - DEBUG - Read 107325 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 17:47:33,573 - DEBUG - Read 118666 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 17:47:33,848 - DEBUG - Read 127256 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 17:47:34,079 - DEBUG - Read 97956 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 17:47:34,335 - DEBUG - Read 121939 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 17:47:34,598 - DEBUG - Read 116166 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 17:47:34,824 - DEBUG - Read 102444 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 17:47:35,067 - DEBUG - Read 100641 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 17:47:35,175 - DEBUG - Detected 23803 variants in 100842 reads
2012-10-07 17:47:35,343 - DEBUG - Detected 33434 variants in 109187 reads
2012-10-07 17:47:35,572 - DEBUG - Detected 41546 variants in 127268 reads
2012-10-07 17:47:35,858 - DEBUG - Detected 48496 variants in 127462 reads
2012-10-07 17:47:36,144 - DEBUG - Detected 54559 variants in 119001 reads
2012-10-07 17:47:36,452 - DEBUG - Detected 60089 variants in 114043 reads
2012-10-07 17:47:36,802 - DEBUG - Detected 73462 variants in 121042 reads
2012-10-07 17:47:37,200 - DEBUG - Detected 78466 variants in 109747 reads
2012-10-07 17:47:37,619 - DEBUG - Detected 83628 variants in 104791 reads
2012-10-07 17:47:38,102 - DEBUG - Detected 88719 variants in 104642 reads
2012-10-07 17:47:38,572 - DEBUG - Detected 93137 variants in 116700 reads
2012-10-07 17:47:39,055 - DEBUG - Detected 96731 variants in 105571 reads
2012-10-07 17:47:39,551 - DEBUG - Detected 100899 variants in 107325 reads
2012-10-07 17:47:40,075 - DEBUG - Detected 105428 variants in 118666 reads
2012-10-07 17:47:40,637 - DEBUG - Detected 112877 variants in 127256 reads
2012-10-07 17:47:41,260 - DEBUG - Detected 116995 variants in 97956 reads
2012-10-07 17:47:41,869 - DEBUG - Detected 120496 variants in 121939 reads
2012-10-07 17:47:42,490 - DEBUG - Detected 124557 variants in 116166 reads
2012-10-07 17:47:43,120 - DEBUG - Detected 128579 variants in 102444 reads
2012-10-07 17:47:43,761 - DEBUG - Detected 133022 variants in 100641 reads
2012-10-07 17:47:45,017 - DEBUG - Taking top 8 variants by coverage in window 9:69002874-69002875
2012-10-07 17:47:45,048 - DEBUG - Taking top 8 variants by coverage in window 9:69002876-69002877
2012-10-07 17:47:45,466 - DEBUG - Taking top 8 variants by coverage in window 9:69007123-69007124
2012-10-07 17:47:45,782 - DEBUG - Taking top 8 variants by coverage in window 9:69011776-69011781
2012-10-07 17:47:46,714 - DEBUG - Taking top 8 variants by coverage in window 9:69024765-69024766
2012-10-07 17:47:46,949 - DEBUG - Taking top 8 variants by coverage in window 9:69026914-69026915
2012-10-07 17:47:47,204 - DEBUG - Taking top 8 variants by coverage in window 9:69029092-69029096
2012-10-07 17:47:47,278 - DEBUG - Taking top 8 variants by coverage in window 9:69029562-69029565
2012-10-07 17:47:47,641 - DEBUG - Taking top 8 variants by coverage in window 9:69034346-69034347
2012-10-07 17:47:48,815 - DEBUG - Taking top 8 variants by coverage in window 9:69056731-69056734
2012-10-07 17:47:48,908 - DEBUG - Taking top 8 variants by coverage in window 9:69057172-69057174
2012-10-07 17:47:48,962 - DEBUG - Taking top 8 variants by coverage in window 9:69057229-69057230
2012-10-07 17:47:49,085 - DEBUG - Taking top 8 variants by coverage in window 9:69060279-69060280
2012-10-07 17:47:50,145 - DEBUG - Taking top 8 variants by coverage in window 9:69084176-69084177
2012-10-07 17:47:50,216 - DEBUG - Taking top 8 variants by coverage in window 9:69085516-69085517
2012-10-07 17:47:50,514 - DEBUG - Taking top 8 variants by coverage in window 9:69089448-69089449
2012-10-07 17:47:50,800 - DEBUG - Taking top 8 variants by coverage in window 9:69095993-69095994
2012-10-07 17:47:50,964 - DEBUG - Taking top 8 variants by coverage in window 9:69097724-69097725
2012-10-07 17:47:51,102 - DEBUG - Taking top 8 variants by coverage in window 9:69101314-69101315
2012-10-07 17:47:51,230 - DEBUG - Taking top 8 variants by coverage in window 9:69103802-69103803
2012-10-07 17:47:51,492 - DEBUG - Taking top 8 variants by coverage in window 9:69110485-69110491
2012-10-07 17:47:51,848 - DEBUG - Taking top 8 variants by coverage in window 9:69118544-69118545
2012-10-07 17:47:52,236 - DEBUG - Taking top 8 variants by coverage in window 9:69126828-69126832
2012-10-07 17:47:52,390 - DEBUG - Taking top 8 variants by coverage in window 9:69130085-69130086
2012-10-07 17:47:52,467 - DEBUG - Taking top 8 variants by coverage in window 9:69130291-69130292
2012-10-07 17:47:52,572 - DEBUG - Taking top 8 variants by coverage in window 9:69130614-69130617
2012-10-07 17:47:52,625 - DEBUG - Taking top 8 variants by coverage in window 9:69130687-69130692
2012-10-07 17:47:52,677 - DEBUG - Taking top 8 variants by coverage in window 9:69130709-69130710
2012-10-07 17:47:52,729 - DEBUG - Taking top 8 variants by coverage in window 9:69130716-69130717
2012-10-07 17:47:52,778 - DEBUG - Taking top 8 variants by coverage in window 9:69130718-69130719
2012-10-07 17:47:52,929 - DEBUG - Taking top 8 variants by coverage in window 9:69130862-69130863
2012-10-07 17:47:53,063 - DEBUG - Taking top 8 variants by coverage in window 9:69133400-69133401
2012-10-07 17:47:53,439 - DEBUG - Taking top 8 variants by coverage in window 9:69144849-69144850
2012-10-07 17:47:53,967 - DEBUG - Taking top 8 variants by coverage in window 9:69153074-69153075
2012-10-07 17:47:54,097 - DEBUG - Taking top 8 variants by coverage in window 9:69155420-69155421
2012-10-07 17:47:54,158 - DEBUG - Taking top 8 variants by coverage in window 9:69157149-69157157
2012-10-07 17:47:54,260 - DEBUG - Taking top 8 variants by coverage in window 9:69159055-69159056
2012-10-07 17:47:54,272 - DEBUG - Taking top 8 variants by coverage in window 9:69159056-69159057
2012-10-07 17:47:54,801 - DEBUG - Taking top 8 variants by coverage in window 9:69170836-69170839
2012-10-07 17:47:54,839 - DEBUG - Taking top 8 variants by coverage in window 9:69171083-69171087
2012-10-07 17:47:54,937 - DEBUG - Taking top 8 variants by coverage in window 9:69172905-69172915
2012-10-07 17:47:54,972 - DEBUG - Taking top 8 variants by coverage in window 9:69172938-69172939
2012-10-07 17:47:55,483 - DEBUG - Taking top 8 variants by coverage in window 9:69184774-69184775
2012-10-07 17:47:56,747 - DEBUG - Taking top 8 variants by coverage in window 9:69203013-69203014
2012-10-07 17:47:56,847 - DEBUG - Taking top 8 variants by coverage in window 9:69203939-69203940
2012-10-07 17:47:56,877 - DEBUG - Taking top 8 variants by coverage in window 9:69204173-69204174
2012-10-07 17:47:57,120 - DEBUG - Taking top 8 variants by coverage in window 9:69208319-69208320
2012-10-07 17:47:57,167 - DEBUG - Taking top 8 variants by coverage in window 9:69208371-69208372
2012-10-07 17:47:57,534 - DEBUG - Taking top 8 variants by coverage in window 9:69214647-69214648
2012-10-07 17:47:59,342 - DEBUG - Taking top 8 variants by coverage in window 9:69251558-69251568
2012-10-07 17:47:59,694 - DEBUG - Taking top 8 variants by coverage in window 9:69261705-69261706
2012-10-07 17:48:00,072 - DEBUG - Taking top 8 variants by coverage in window 9:69267602-69267603
2012-10-07 17:48:00,128 - DEBUG - Taking top 8 variants by coverage in window 9:69267664-69267665
2012-10-07 17:48:01,001 - DEBUG - Taking top 8 variants by coverage in window 9:69282768-69282769
2012-10-07 17:48:01,564 - DEBUG - Taking top 8 variants by coverage in window 9:69292437-69292438
2012-10-07 17:48:01,635 - DEBUG - Taking top 8 variants by coverage in window 9:69292582-69292583
2012-10-07 17:48:02,883 - DEBUG - Taking top 8 variants by coverage in window 9:69302626-69302627
2012-10-07 17:48:03,496 - DEBUG - Taking top 8 variants by coverage in window 9:69309429-69309430
2012-10-07 17:48:03,621 - DEBUG - Taking top 8 variants by coverage in window 9:69310298-69310299
2012-10-07 17:48:03,886 - DEBUG - Taking top 8 variants by coverage in window 9:69312204-69312205
2012-10-07 17:48:03,972 - DEBUG - Taking top 8 variants by coverage in window 9:69313242-69313243
2012-10-07 17:48:04,106 - DEBUG - Taking top 8 variants by coverage in window 9:69313742-69313743
2012-10-07 17:48:04,124 - DEBUG - Taking top 8 variants by coverage in window 9:69313745-69313746
2012-10-07 17:48:04,860 - DEBUG - Taking top 8 variants by coverage in window 9:69324162-69324170
2012-10-07 17:48:04,877 - DEBUG - Taking top 8 variants by coverage in window 9:69324192-69324193
2012-10-07 17:48:05,199 - DEBUG - Taking top 8 variants by coverage in window 9:69326056-69326057
2012-10-07 17:48:05,246 - DEBUG - Taking top 8 variants by coverage in window 9:69326698-69326699
2012-10-07 17:48:05,308 - DEBUG - Taking top 8 variants by coverage in window 9:69327215-69327216
2012-10-07 17:48:05,552 - DEBUG - Taking top 8 variants by coverage in window 9:69330607-69330610
2012-10-07 17:48:06,554 - DEBUG - Taking top 8 variants by coverage in window 9:69341941-69341942
2012-10-07 17:48:06,894 - DEBUG - Taking top 8 variants by coverage in window 9:69342562-69342563
2012-10-07 17:48:07,050 - DEBUG - Taking top 8 variants by coverage in window 9:69346396-69346397
2012-10-07 17:48:07,486 - DEBUG - Taking top 8 variants by coverage in window 9:69350296-69350297
2012-10-07 17:48:07,783 - DEBUG - Taking top 8 variants by coverage in window 9:69352694-69352695
2012-10-07 17:48:08,004 - DEBUG - Taking top 8 variants by coverage in window 9:69354680-69354681
2012-10-07 17:48:08,397 - DEBUG - Taking top 8 variants by coverage in window 9:69359602-69359603
2012-10-07 17:48:08,637 - DEBUG - Taking top 8 variants by coverage in window 9:69361780-69361781
2012-10-07 17:48:08,990 - DEBUG - Taking top 8 variants by coverage in window 9:69368221-69368222
2012-10-07 17:48:09,017 - DEBUG - Taking top 8 variants by coverage in window 9:69368239-69368240
2012-10-07 17:48:09,078 - DEBUG - Taking top 8 variants by coverage in window 9:69368276-69368277
2012-10-07 17:48:09,097 - DEBUG - Taking top 8 variants by coverage in window 9:69368369-69368370
2012-10-07 17:48:09,349 - DEBUG - Taking top 8 variants by coverage in window 9:69370402-69370403
2012-10-07 17:48:09,390 - DEBUG - Taking top 8 variants by coverage in window 9:69370415-69370416
2012-10-07 17:48:09,758 - DEBUG - Taking top 8 variants by coverage in window 9:69373790-69373791
2012-10-07 17:48:09,850 - DEBUG - Taking top 8 variants by coverage in window 9:69374929-69374935
2012-10-07 17:48:09,963 - DEBUG - Taking top 8 variants by coverage in window 9:69375350-69375351
2012-10-07 17:48:10,341 - DEBUG - Taking top 8 variants by coverage in window 9:69379811-69379812
2012-10-07 17:48:10,578 - DEBUG - Taking top 8 variants by coverage in window 9:69383709-69383710
2012-10-07 17:48:10,808 - DEBUG - Taking top 8 variants by coverage in window 9:69387834-69387839
2012-10-07 17:48:12,938 - DEBUG - Taking top 8 variants by coverage in window 9:69419496-69419498
2012-10-07 17:48:13,428 - DEBUG - Taking top 8 variants by coverage in window 9:69424268-69424269
2012-10-07 17:48:13,642 - DEBUG - Taking top 8 variants by coverage in window 9:69426367-69426368
2012-10-07 17:48:13,780 - DEBUG - Taking top 8 variants by coverage in window 9:69427626-69427627
2012-10-07 17:48:13,799 - DEBUG - Taking top 8 variants by coverage in window 9:69427635-69427636
2012-10-07 17:48:14,181 - DEBUG - Taking top 8 variants by coverage in window 9:69433611-69433623
2012-10-07 17:48:16,846 - DEBUG - Taking top 8 variants by coverage in window 9:69464799-69464803
2012-10-07 17:48:17,006 - DEBUG - Taking top 8 variants by coverage in window 9:69466187-69466189
2012-10-07 17:48:19,231 - DEBUG - Taking top 8 variants by coverage in window 9:69507428-69507429
2012-10-07 17:48:19,816 - DEBUG - Taking top 8 variants by coverage in window 9:69513021-69513022
2012-10-07 17:48:19,892 - DEBUG - Taking top 8 variants by coverage in window 9:69513862-69513863
2012-10-07 17:48:20,352 - DEBUG - Taking top 8 variants by coverage in window 9:69523189-69523190
2012-10-07 17:48:20,386 - DEBUG - Taking top 8 variants by coverage in window 9:69523585-69523586
2012-10-07 17:48:20,479 - DEBUG - Taking top 8 variants by coverage in window 9:69524560-69524561
2012-10-07 17:48:20,487 - DEBUG - Taking top 8 variants by coverage in window 9:69524588-69524589
2012-10-07 17:48:20,519 - DEBUG - Taking top 8 variants by coverage in window 9:69524766-69524767
2012-10-07 17:48:20,692 - DEBUG - Taking top 8 variants by coverage in window 9:69526866-69526870
2012-10-07 17:48:20,812 - DEBUG - Taking top 8 variants by coverage in window 9:69527957-69527958
2012-10-07 17:48:21,254 - DEBUG - Taking top 8 variants by coverage in window 9:69534373-69534381
2012-10-07 17:48:21,340 - DEBUG - Taking top 8 variants by coverage in window 9:69534407-69534408
2012-10-07 17:48:21,390 - DEBUG - Taking top 8 variants by coverage in window 9:69534416-69534422
2012-10-07 17:48:21,696 - DEBUG - Taking top 8 variants by coverage in window 9:69536742-69536744
2012-10-07 17:48:21,858 - DEBUG - Taking top 8 variants by coverage in window 9:69537485-69537486
2012-10-07 17:48:21,873 - DEBUG - Taking top 8 variants by coverage in window 9:69537486-69537487
2012-10-07 17:48:22,239 - DEBUG - Taking top 8 variants by coverage in window 9:69542672-69542673
2012-10-07 17:48:22,274 - DEBUG - Taking top 8 variants by coverage in window 9:69543277-69543278
2012-10-07 17:48:22,430 - DEBUG - Taking top 8 variants by coverage in window 9:69544416-69544417
2012-10-07 17:48:22,721 - DEBUG - Taking top 8 variants by coverage in window 9:69547526-69547527
2012-10-07 17:48:22,914 - DEBUG - Taking top 8 variants by coverage in window 9:69550067-69550068
2012-10-07 17:48:23,021 - DEBUG - Taking top 8 variants by coverage in window 9:69551159-69551161
2012-10-07 17:48:23,042 - DEBUG - Taking top 8 variants by coverage in window 9:69551170-69551171
2012-10-07 17:48:23,270 - DEBUG - Taking top 8 variants by coverage in window 9:69554839-69554840
2012-10-07 17:48:23,875 - DEBUG - Taking top 8 variants by coverage in window 9:69567394-69567400
2012-10-07 17:48:24,337 - DEBUG - Taking top 8 variants by coverage in window 9:69576415-69576416
2012-10-07 17:48:24,793 - DEBUG - Taking top 8 variants by coverage in window 9:69585117-69585118
2012-10-07 17:48:24,812 - DEBUG - Taking top 8 variants by coverage in window 9:69585144-69585145
2012-10-07 17:48:24,969 - DEBUG - Taking top 8 variants by coverage in window 9:69586751-69586752
2012-10-07 17:48:25,278 - DEBUG - Taking top 8 variants by coverage in window 9:69593890-69593891
2012-10-07 17:48:25,441 - DEBUG - Taking top 8 variants by coverage in window 9:69596415-69596416
2012-10-07 17:48:25,664 - DEBUG - Taking top 8 variants by coverage in window 9:69600288-69600289
2012-10-07 17:48:25,996 - DEBUG - Taking top 8 variants by coverage in window 9:69612094-69612095
2012-10-07 17:48:26,005 - DEBUG - Taking top 8 variants by coverage in window 9:69612095-69612096
2012-10-07 17:48:26,207 - DEBUG - Taking top 8 variants by coverage in window 9:69619321-69619322
2012-10-07 17:48:26,352 - DEBUG - Taking top 8 variants by coverage in window 9:69622202-69622212
2012-10-07 17:48:26,495 - DEBUG - Taking top 8 variants by coverage in window 9:69624488-69624489
2012-10-07 17:48:27,029 - DEBUG - Taking top 8 variants by coverage in window 9:69633285-69633287
2012-10-07 17:48:27,149 - DEBUG - Taking top 8 variants by coverage in window 9:69634762-69634764
2012-10-07 17:48:27,482 - DEBUG - Taking top 8 variants by coverage in window 9:69640613-69640614
2012-10-07 17:48:27,498 - DEBUG - Taking top 8 variants by coverage in window 9:69640617-69640618
2012-10-07 17:48:27,879 - DEBUG - Taking top 8 variants by coverage in window 9:69647633-69647634
2012-10-07 17:48:28,056 - DEBUG - Taking top 8 variants by coverage in window 9:69651266-69651267
2012-10-07 17:48:29,234 - DEBUG - Taking top 8 variants by coverage in window 9:69658547-69658548
2012-10-07 17:48:29,269 - DEBUG - Taking top 8 variants by coverage in window 9:69658563-69658564
2012-10-07 17:48:29,350 - DEBUG - Taking top 8 variants by coverage in window 9:69659135-69659136
2012-10-07 17:48:29,391 - DEBUG - Taking top 8 variants by coverage in window 9:69659372-69659373
2012-10-07 17:48:29,454 - DEBUG - Taking top 8 variants by coverage in window 9:69660615-69660616
2012-10-07 17:48:30,287 - DEBUG - Taking top 8 variants by coverage in window 9:69670089-69670092
2012-10-07 17:48:30,304 - DEBUG - Taking top 8 variants by coverage in window 9:69670267-69670280
2012-10-07 17:48:30,397 - DEBUG - Taking top 8 variants by coverage in window 9:69671125-69671126
2012-10-07 17:48:30,800 - DEBUG - Taking top 8 variants by coverage in window 9:69675800-69675801
2012-10-07 17:48:30,950 - DEBUG - Taking top 8 variants by coverage in window 9:69680710-69680711
2012-10-07 17:48:31,554 - DEBUG - Taking top 8 variants by coverage in window 9:69697890-69697891
2012-10-07 17:48:31,844 - DEBUG - Taking top 8 variants by coverage in window 9:69704793-69704794
2012-10-07 17:48:31,904 - DEBUG - Taking top 8 variants by coverage in window 9:69705167-69705173
2012-10-07 17:48:32,337 - DEBUG - Taking top 8 variants by coverage in window 9:69716231-69716232
2012-10-07 17:48:32,392 - DEBUG - Taking top 8 variants by coverage in window 9:69716285-69716286
2012-10-07 17:48:32,408 - DEBUG - Taking top 8 variants by coverage in window 9:69716297-69716298
2012-10-07 17:48:32,495 - DEBUG - Taking top 8 variants by coverage in window 9:69718021-69718022
2012-10-07 17:48:32,591 - DEBUG - Taking top 8 variants by coverage in window 9:69719221-69719224
2012-10-07 17:48:32,805 - DEBUG - Taking top 8 variants by coverage in window 9:69719730-69719731
2012-10-07 17:48:32,828 - DEBUG - Taking top 8 variants by coverage in window 9:69719873-69719874
2012-10-07 17:48:32,865 - DEBUG - Taking top 8 variants by coverage in window 9:69719887-69719888
2012-10-07 17:48:33,027 - DEBUG - Taking top 8 variants by coverage in window 9:69722924-69722925
2012-10-07 17:48:33,289 - DEBUG - Taking top 8 variants by coverage in window 9:69728275-69728284
2012-10-07 17:48:33,636 - DEBUG - Taking top 8 variants by coverage in window 9:69730456-69730457
2012-10-07 17:48:33,658 - DEBUG - Taking top 8 variants by coverage in window 9:69730458-69730459
2012-10-07 17:48:34,170 - DEBUG - Taking top 8 variants by coverage in window 9:69738769-69738770
2012-10-07 17:48:34,781 - DEBUG - Taking top 8 variants by coverage in window 9:69747820-69747821
2012-10-07 17:48:35,908 - DEBUG - Taking top 8 variants by coverage in window 9:69767542-69767543
2012-10-07 17:48:36,010 - DEBUG - Taking top 8 variants by coverage in window 9:69767573-69767574
2012-10-07 17:48:36,037 - DEBUG - Taking top 8 variants by coverage in window 9:69767576-69767577
2012-10-07 17:48:36,051 - DEBUG - Taking top 8 variants by coverage in window 9:69767578-69767579
2012-10-07 17:48:36,141 - DEBUG - Taking top 8 variants by coverage in window 9:69768633-69768634
2012-10-07 17:48:37,319 - DEBUG - Taking top 8 variants by coverage in window 9:69793520-69793521
2012-10-07 17:48:37,342 - DEBUG - Taking top 8 variants by coverage in window 9:69793523-69793524
2012-10-07 17:48:37,572 - DEBUG - Taking top 8 variants by coverage in window 9:69794355-69794356
2012-10-07 17:48:37,588 - DEBUG - Taking top 8 variants by coverage in window 9:69794407-69794408
2012-10-07 17:48:37,652 - DEBUG - Taking top 8 variants by coverage in window 9:69794810-69794811
2012-10-07 17:48:37,728 - DEBUG - Taking top 8 variants by coverage in window 9:69795222-69795223
2012-10-07 17:48:37,789 - DEBUG - Taking top 8 variants by coverage in window 9:69795840-69795841
2012-10-07 17:48:37,866 - DEBUG - Taking top 8 variants by coverage in window 9:69796714-69796715
2012-10-07 17:48:38,007 - DEBUG - Taking top 8 variants by coverage in window 9:69798051-69798052
2012-10-07 17:48:38,015 - DEBUG - Taking top 8 variants by coverage in window 9:69798053-69798054
2012-10-07 17:48:38,198 - DEBUG - Taking top 8 variants by coverage in window 9:69799905-69799906
2012-10-07 17:48:38,354 - DEBUG - Taking top 8 variants by coverage in window 9:69802354-69802355
2012-10-07 17:48:41,799 - DEBUG - Taking top 8 variants by coverage in window 9:69891414-69891418
2012-10-07 17:48:41,907 - DEBUG - Taking top 8 variants by coverage in window 9:69892070-69892071
2012-10-07 17:48:42,007 - DEBUG - Taking top 8 variants by coverage in window 9:69892418-69892419
2012-10-07 17:48:42,324 - DEBUG - Taking top 8 variants by coverage in window 9:69895502-69895503
2012-10-07 17:48:42,357 - DEBUG - Taking top 8 variants by coverage in window 9:69895519-69895520
2012-10-07 17:48:43,377 - DEBUG - Taking top 8 variants by coverage in window 9:69908364-69908365
2012-10-07 17:48:44,122 - DEBUG - Taking top 8 variants by coverage in window 9:69918898-69918899
2012-10-07 17:48:44,692 - DEBUG - Taking top 8 variants by coverage in window 9:69925644-69925652
2012-10-07 17:48:44,716 - DEBUG - Taking top 8 variants by coverage in window 9:69925668-69925669
2012-10-07 17:48:44,935 - DEBUG - Taking top 8 variants by coverage in window 9:69927329-69927330
2012-10-07 17:48:45,014 - DEBUG - Taking top 8 variants by coverage in window 9:69927356-69927357
2012-10-07 17:48:45,402 - DEBUG - Taking top 8 variants by coverage in window 9:69931752-69931753
2012-10-07 17:48:45,932 - DEBUG - Taking top 8 variants by coverage in window 9:69940456-69940460
2012-10-07 17:48:46,419 - DEBUG - Taking top 8 variants by coverage in window 9:69947138-69947139
2012-10-07 17:48:47,248 - DEBUG - Taking top 8 variants by coverage in window 9:69950001-69950009
2012-10-07 17:48:47,625 - DEBUG - Taking top 8 variants by coverage in window 9:69954514-69954515
2012-10-07 17:48:47,696 - DEBUG - Taking top 8 variants by coverage in window 9:69955596-69955597
2012-10-07 17:48:48,362 - DEBUG - Taking top 8 variants by coverage in window 9:69961178-69961179
2012-10-07 17:48:50,682 - DEBUG - Taking top 8 variants by coverage in window 9:69995863-69995864
2012-10-07 17:48:50,847 - DEBUG - Taking top 8 variants by coverage in window 9:69996564-69996566
2012-10-07 17:48:50,913 - DEBUG - Taking top 8 variants by coverage in window 9:69996567-69996568
2012-10-07 17:48:50,954 - DEBUG - Taking top 8 variants by coverage in window 9:69996569-69996570
2012-10-07 17:48:51,164 - DEBUG - Taking top 8 variants by coverage in window 9:69997300-69997301
2012-10-07 17:48:51,219 - DEBUG - Taking top 8 variants by coverage in window 9:69997845-69997846
2012-10-07 17:48:52,359 - DEBUG - Read 96901 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 17:48:52,609 - DEBUG - Read 104759 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 17:48:52,872 - DEBUG - Read 120213 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 17:48:53,170 - DEBUG - Read 122018 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 17:48:53,449 - DEBUG - Read 113305 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 17:48:53,704 - DEBUG - Read 108813 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 17:48:53,967 - DEBUG - Read 115338 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 17:48:54,220 - DEBUG - Read 103712 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 17:48:54,470 - DEBUG - Read 99524 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 17:48:54,745 - DEBUG - Read 99350 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 17:48:55,011 - DEBUG - Read 112008 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 17:48:55,247 - DEBUG - Read 100602 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 17:48:55,491 - DEBUG - Read 100502 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 17:48:55,738 - DEBUG - Read 112452 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 17:48:56,011 - DEBUG - Read 121101 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 17:48:56,238 - DEBUG - Read 91406 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 17:48:56,492 - DEBUG - Read 116276 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 17:48:56,811 - DEBUG - Read 109648 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 17:48:57,035 - DEBUG - Read 96791 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 17:48:57,276 - DEBUG - Read 95476 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 17:48:57,386 - DEBUG - Detected 20587 variants in 96901 reads
2012-10-07 17:48:57,545 - DEBUG - Detected 31794 variants in 104759 reads
2012-10-07 17:48:57,755 - DEBUG - Detected 39149 variants in 120213 reads
2012-10-07 17:48:57,997 - DEBUG - Detected 46649 variants in 122018 reads
2012-10-07 17:48:58,261 - DEBUG - Detected 53429 variants in 113305 reads
2012-10-07 17:48:58,549 - DEBUG - Detected 61266 variants in 108813 reads
2012-10-07 17:48:58,916 - DEBUG - Detected 75335 variants in 115338 reads
2012-10-07 17:48:59,305 - DEBUG - Detected 80439 variants in 103712 reads
2012-10-07 17:48:59,712 - DEBUG - Detected 86861 variants in 99524 reads
2012-10-07 17:49:00,153 - DEBUG - Detected 91458 variants in 99350 reads
2012-10-07 17:49:00,622 - DEBUG - Detected 96077 variants in 112008 reads
2012-10-07 17:49:01,098 - DEBUG - Detected 100004 variants in 100602 reads
2012-10-07 17:49:01,590 - DEBUG - Detected 104126 variants in 100502 reads
2012-10-07 17:49:02,161 - DEBUG - Detected 108880 variants in 112452 reads
2012-10-07 17:49:02,725 - DEBUG - Detected 116576 variants in 121101 reads
2012-10-07 17:49:03,297 - DEBUG - Detected 120285 variants in 91406 reads
2012-10-07 17:49:03,904 - DEBUG - Detected 123760 variants in 116276 reads
2012-10-07 17:49:04,527 - DEBUG - Detected 127960 variants in 109648 reads
2012-10-07 17:49:05,215 - DEBUG - Detected 132122 variants in 96791 reads
2012-10-07 17:49:05,867 - DEBUG - Detected 136633 variants in 95476 reads
2012-10-07 17:49:06,934 - DEBUG - Taking top 8 variants by coverage in window 9:70001062-70001063
2012-10-07 17:49:07,148 - DEBUG - Taking top 8 variants by coverage in window 9:70001675-70001676
2012-10-07 17:49:07,265 - DEBUG - Taking top 8 variants by coverage in window 9:70003394-70003395
2012-10-07 17:49:07,826 - DEBUG - Taking top 8 variants by coverage in window 9:70010284-70010286
2012-10-07 17:49:08,630 - DEBUG - Taking top 8 variants by coverage in window 9:70018245-70018246
2012-10-07 17:49:09,022 - DEBUG - Taking top 8 variants by coverage in window 9:70021923-70021924
2012-10-07 17:49:09,038 - DEBUG - Taking top 8 variants by coverage in window 9:70021940-70021941
2012-10-07 17:49:09,893 - DEBUG - Taking top 8 variants by coverage in window 9:70033003-70033005
2012-10-07 17:49:10,278 - DEBUG - Taking top 8 variants by coverage in window 9:70037486-70037496
2012-10-07 17:49:10,347 - DEBUG - Taking top 8 variants by coverage in window 9:70037515-70037516
2012-10-07 17:49:10,839 - DEBUG - Taking top 8 variants by coverage in window 9:70043376-70043382
2012-10-07 17:49:10,989 - DEBUG - Taking top 8 variants by coverage in window 9:70045293-70045294
2012-10-07 17:49:11,194 - DEBUG - Taking top 8 variants by coverage in window 9:70047073-70047074
2012-10-07 17:49:11,656 - DEBUG - Taking top 8 variants by coverage in window 9:70052023-70052024
2012-10-07 17:49:11,825 - DEBUG - Taking top 8 variants by coverage in window 9:70053601-70053602
2012-10-07 17:49:12,512 - DEBUG - Taking top 8 variants by coverage in window 9:70062557-70062558
2012-10-07 17:49:13,542 - DEBUG - Taking top 8 variants by coverage in window 9:70077613-70077614
2012-10-07 17:49:14,270 - DEBUG - Taking top 8 variants by coverage in window 9:70086968-70086969
2012-10-07 17:49:15,163 - DEBUG - Taking top 8 variants by coverage in window 9:70098763-70098764
2012-10-07 17:49:16,491 - DEBUG - Taking top 8 variants by coverage in window 9:70114703-70114704
2012-10-07 17:49:16,891 - DEBUG - Taking top 8 variants by coverage in window 9:70117791-70117793
2012-10-07 17:49:16,968 - DEBUG - Taking top 8 variants by coverage in window 9:70117794-70117795
2012-10-07 17:49:17,321 - DEBUG - Taking top 8 variants by coverage in window 9:70120039-70120040
2012-10-07 17:49:17,407 - DEBUG - Taking top 8 variants by coverage in window 9:70120073-70120078
2012-10-07 17:49:17,616 - DEBUG - Taking top 8 variants by coverage in window 9:70122360-70122368
2012-10-07 17:49:17,809 - DEBUG - Taking top 8 variants by coverage in window 9:70123901-70123902
2012-10-07 17:49:17,956 - DEBUG - Taking top 8 variants by coverage in window 9:70124691-70124692
2012-10-07 17:49:17,995 - DEBUG - Taking top 8 variants by coverage in window 9:70125031-70125032
2012-10-07 17:49:18,110 - DEBUG - Taking top 8 variants by coverage in window 9:70126776-70126777
2012-10-07 17:49:18,677 - DEBUG - Taking top 8 variants by coverage in window 9:70130260-70130261
2012-10-07 17:49:18,869 - DEBUG - Taking top 8 variants by coverage in window 9:70132417-70132418
2012-10-07 17:49:18,940 - DEBUG - Taking top 8 variants by coverage in window 9:70133308-70133311
2012-10-07 17:49:19,375 - DEBUG - Taking top 8 variants by coverage in window 9:70137970-70137971
2012-10-07 17:49:19,382 - DEBUG - Taking top 8 variants by coverage in window 9:70137971-70137972
2012-10-07 17:49:19,394 - DEBUG - Taking top 8 variants by coverage in window 9:70137973-70137976
2012-10-07 17:49:19,512 - DEBUG - Taking top 8 variants by coverage in window 9:70138006-70138007
2012-10-07 17:49:19,918 - DEBUG - Taking top 8 variants by coverage in window 9:70142783-70142784
2012-10-07 17:49:20,961 - DEBUG - Taking top 8 variants by coverage in window 9:70158350-70158352
2012-10-07 17:49:21,016 - DEBUG - Taking top 8 variants by coverage in window 9:70158519-70158521
2012-10-07 17:49:21,315 - DEBUG - Taking top 8 variants by coverage in window 9:70161829-70161830
2012-10-07 17:49:21,981 - DEBUG - Taking top 8 variants by coverage in window 9:70172196-70172197
2012-10-07 17:49:22,130 - DEBUG - Taking top 8 variants by coverage in window 9:70173610-70173611
2012-10-07 17:49:22,188 - DEBUG - Taking top 8 variants by coverage in window 9:70173650-70173651
2012-10-07 17:49:22,206 - DEBUG - Taking top 8 variants by coverage in window 9:70173652-70173658
2012-10-07 17:49:22,310 - DEBUG - Taking top 8 variants by coverage in window 9:70174757-70174758
2012-10-07 17:49:22,561 - DEBUG - Taking top 8 variants by coverage in window 9:70178487-70178489
2012-10-07 17:49:22,793 - DEBUG - Taking top 8 variants by coverage in window 9:70181353-70181354
2012-10-07 17:49:22,898 - DEBUG - Taking top 8 variants by coverage in window 9:70181924-70181932
2012-10-07 17:49:22,917 - DEBUG - Taking top 8 variants by coverage in window 9:70181937-70181938
2012-10-07 17:49:22,968 - DEBUG - Taking top 8 variants by coverage in window 9:70182471-70182472
2012-10-07 17:49:23,038 - DEBUG - Taking top 8 variants by coverage in window 9:70183245-70183248
2012-10-07 17:49:23,058 - DEBUG - Taking top 8 variants by coverage in window 9:70183280-70183281
2012-10-07 17:49:23,276 - DEBUG - Taking top 8 variants by coverage in window 9:70184586-70184587
2012-10-07 17:49:23,525 - DEBUG - Taking top 8 variants by coverage in window 9:70184955-70184956
2012-10-07 17:49:23,599 - DEBUG - Taking top 8 variants by coverage in window 9:70185171-70185172
2012-10-07 17:49:23,719 - DEBUG - Taking top 8 variants by coverage in window 9:70186147-70186148
2012-10-07 17:49:23,739 - DEBUG - Taking top 8 variants by coverage in window 9:70186162-70186163
2012-10-07 17:49:23,898 - DEBUG - Taking top 8 variants by coverage in window 9:70189522-70189523
2012-10-07 17:49:23,951 - DEBUG - Taking top 8 variants by coverage in window 9:70190066-70190067
2012-10-07 17:49:24,244 - DEBUG - Taking top 8 variants by coverage in window 9:70192898-70192899
2012-10-07 17:49:24,272 - DEBUG - Taking top 8 variants by coverage in window 9:70192900-70192901
2012-10-07 17:49:24,742 - DEBUG - Taking top 8 variants by coverage in window 9:70195458-70195459
2012-10-07 17:49:25,011 - DEBUG - Taking top 8 variants by coverage in window 9:70201592-70201593
2012-10-07 17:49:25,305 - DEBUG - Taking top 8 variants by coverage in window 9:70205107-70205108
2012-10-07 17:49:25,402 - DEBUG - Taking top 8 variants by coverage in window 9:70205944-70205945
2012-10-07 17:49:25,852 - DEBUG - Taking top 8 variants by coverage in window 9:70212484-70212485
2012-10-07 17:49:26,082 - DEBUG - Taking top 8 variants by coverage in window 9:70215599-70215600
2012-10-07 17:49:26,169 - DEBUG - Taking top 8 variants by coverage in window 9:70216864-70216865
2012-10-07 17:49:26,372 - DEBUG - Taking top 8 variants by coverage in window 9:70218844-70218848
2012-10-07 17:49:26,451 - DEBUG - Taking top 8 variants by coverage in window 9:70219624-70219629
2012-10-07 17:49:27,136 - DEBUG - Taking top 8 variants by coverage in window 9:70225438-70225439
2012-10-07 17:49:27,413 - DEBUG - Taking top 8 variants by coverage in window 9:70227883-70227890
2012-10-07 17:49:27,586 - DEBUG - Taking top 8 variants by coverage in window 9:70227970-70227971
2012-10-07 17:49:27,686 - DEBUG - Taking top 8 variants by coverage in window 9:70228610-70228611
2012-10-07 17:49:29,073 - DEBUG - Taking top 8 variants by coverage in window 9:70238687-70238688
2012-10-07 17:49:29,255 - DEBUG - Taking top 8 variants by coverage in window 9:70240909-70240918
2012-10-07 17:49:29,407 - DEBUG - Taking top 8 variants by coverage in window 9:70241655-70241656
2012-10-07 17:49:30,329 - DEBUG - Taking top 8 variants by coverage in window 9:70250032-70250033
2012-10-07 17:49:31,766 - DEBUG - Taking top 8 variants by coverage in window 9:70271511-70271512
2012-10-07 17:49:31,807 - DEBUG - Taking top 8 variants by coverage in window 9:70271549-70271550
2012-10-07 17:49:32,879 - DEBUG - Taking top 8 variants by coverage in window 9:70298777-70298778
2012-10-07 17:49:34,165 - DEBUG - Taking top 8 variants by coverage in window 9:70336885-70336886
2012-10-07 17:49:34,196 - DEBUG - Taking top 8 variants by coverage in window 9:70336934-70336935
2012-10-07 17:49:34,451 - DEBUG - Taking top 8 variants by coverage in window 9:70345586-70345587
2012-10-07 17:49:34,707 - DEBUG - Taking top 8 variants by coverage in window 9:70352613-70352614
2012-10-07 17:49:36,076 - DEBUG - Taking top 8 variants by coverage in window 9:70373228-70373229
2012-10-07 17:49:36,467 - DEBUG - Taking top 8 variants by coverage in window 9:70378609-70378610
2012-10-07 17:49:36,947 - DEBUG - Taking top 8 variants by coverage in window 9:70387172-70387173
2012-10-07 17:49:37,750 - DEBUG - Taking top 8 variants by coverage in window 9:70418367-70418368
2012-10-07 17:49:37,963 - DEBUG - Taking top 8 variants by coverage in window 9:70425312-70425315
2012-10-07 17:49:37,988 - DEBUG - Taking top 8 variants by coverage in window 9:70425323-70425324
2012-10-07 17:49:38,004 - DEBUG - Taking top 8 variants by coverage in window 9:70425338-70425339
2012-10-07 17:49:38,048 - DEBUG - Taking top 8 variants by coverage in window 9:70425613-70425614
2012-10-07 17:49:38,454 - DEBUG - Taking top 8 variants by coverage in window 9:70440797-70440798
2012-10-07 17:49:38,479 - DEBUG - Taking top 8 variants by coverage in window 9:70440822-70440823
2012-10-07 17:49:38,850 - DEBUG - Taking top 8 variants by coverage in window 9:70448769-70448770
2012-10-07 17:49:39,178 - DEBUG - Taking top 8 variants by coverage in window 9:70459624-70459625
2012-10-07 17:49:39,545 - DEBUG - Taking top 8 variants by coverage in window 9:70467474-70467476
2012-10-07 17:49:39,575 - DEBUG - Taking top 8 variants by coverage in window 9:70467551-70467552
2012-10-07 17:49:39,757 - DEBUG - Taking top 8 variants by coverage in window 9:70473204-70473206
2012-10-07 17:49:40,295 - DEBUG - Taking top 8 variants by coverage in window 9:70486066-70486067
2012-10-07 17:49:40,614 - DEBUG - Taking top 8 variants by coverage in window 9:70491323-70491324
2012-10-07 17:49:41,173 - DEBUG - Taking top 8 variants by coverage in window 9:70501617-70501618
2012-10-07 17:49:41,754 - DEBUG - Taking top 8 variants by coverage in window 9:70514007-70514008
2012-10-07 17:49:42,009 - DEBUG - Taking top 8 variants by coverage in window 9:70518294-70518295
2012-10-07 17:49:44,655 - DEBUG - Taking top 8 variants by coverage in window 9:70586642-70586643
2012-10-07 17:49:46,321 - DEBUG - Taking top 8 variants by coverage in window 9:70640279-70640280
2012-10-07 17:49:46,503 - DEBUG - Taking top 8 variants by coverage in window 9:70642389-70642390
2012-10-07 17:49:46,779 - DEBUG - Taking top 8 variants by coverage in window 9:70646762-70646763
2012-10-07 17:49:47,253 - DEBUG - Taking top 8 variants by coverage in window 9:70651716-70651717
2012-10-07 17:49:47,440 - DEBUG - Taking top 8 variants by coverage in window 9:70654501-70654505
2012-10-07 17:49:47,588 - DEBUG - Taking top 8 variants by coverage in window 9:70654564-70654565
2012-10-07 17:49:48,007 - DEBUG - Taking top 8 variants by coverage in window 9:70658621-70658627
2012-10-07 17:49:48,144 - DEBUG - Taking top 8 variants by coverage in window 9:70660795-70660798
2012-10-07 17:49:48,342 - DEBUG - Taking top 8 variants by coverage in window 9:70663186-70663190
2012-10-07 17:49:48,357 - DEBUG - Taking top 8 variants by coverage in window 9:70663191-70663199
2012-10-07 17:49:48,440 - DEBUG - Taking top 8 variants by coverage in window 9:70663893-70663897
2012-10-07 17:49:48,594 - DEBUG - Taking top 8 variants by coverage in window 9:70665494-70665495
2012-10-07 17:49:48,602 - DEBUG - Taking top 8 variants by coverage in window 9:70665517-70665518
2012-10-07 17:49:48,618 - DEBUG - Taking top 8 variants by coverage in window 9:70665539-70665549
2012-10-07 17:49:48,806 - DEBUG - Taking top 8 variants by coverage in window 9:70666005-70666006
2012-10-07 17:49:49,323 - DEBUG - Taking top 8 variants by coverage in window 9:70672803-70672812
2012-10-07 17:49:49,500 - DEBUG - Taking top 8 variants by coverage in window 9:70674620-70674621
2012-10-07 17:49:49,635 - DEBUG - Taking top 8 variants by coverage in window 9:70676170-70676171
2012-10-07 17:49:49,817 - DEBUG - Taking top 8 variants by coverage in window 9:70676724-70676725
2012-10-07 17:49:49,859 - DEBUG - Taking top 8 variants by coverage in window 9:70676774-70676775
2012-10-07 17:49:50,217 - DEBUG - Taking top 8 variants by coverage in window 9:70681457-70681458
2012-10-07 17:49:50,407 - DEBUG - Taking top 8 variants by coverage in window 9:70683252-70683253
2012-10-07 17:49:50,831 - DEBUG - Taking top 8 variants by coverage in window 9:70688668-70688669
2012-10-07 17:49:50,841 - DEBUG - Taking top 8 variants by coverage in window 9:70688691-70688692
2012-10-07 17:49:50,966 - DEBUG - Taking top 8 variants by coverage in window 9:70690960-70690961
2012-10-07 17:49:51,055 - DEBUG - Taking top 8 variants by coverage in window 9:70691577-70691578
2012-10-07 17:49:51,081 - DEBUG - Taking top 8 variants by coverage in window 9:70691617-70691618
2012-10-07 17:49:51,345 - DEBUG - Taking top 8 variants by coverage in window 9:70695046-70695047
2012-10-07 17:49:51,565 - DEBUG - Taking top 8 variants by coverage in window 9:70698471-70698472
2012-10-07 17:49:51,826 - DEBUG - Taking top 8 variants by coverage in window 9:70703017-70703018
2012-10-07 17:49:51,907 - DEBUG - Taking top 8 variants by coverage in window 9:70704125-70704126
2012-10-07 17:49:51,957 - DEBUG - Taking top 8 variants by coverage in window 9:70704155-70704156
2012-10-07 17:49:52,317 - DEBUG - Taking top 8 variants by coverage in window 9:70708520-70708521
2012-10-07 17:49:52,329 - DEBUG - Taking top 8 variants by coverage in window 9:70708540-70708541
2012-10-07 17:49:52,438 - DEBUG - Taking top 8 variants by coverage in window 9:70708757-70708762
2012-10-07 17:49:52,727 - DEBUG - Taking top 8 variants by coverage in window 9:70714078-70714081
2012-10-07 17:49:53,348 - DEBUG - Taking top 8 variants by coverage in window 9:70718243-70718244
2012-10-07 17:49:53,605 - DEBUG - Taking top 8 variants by coverage in window 9:70720044-70720045
2012-10-07 17:49:53,808 - DEBUG - Taking top 8 variants by coverage in window 9:70720182-70720186
2012-10-07 17:49:53,941 - DEBUG - Taking top 8 variants by coverage in window 9:70720656-70720657
2012-10-07 17:49:53,983 - DEBUG - Taking top 8 variants by coverage in window 9:70721097-70721100
2012-10-07 17:49:54,095 - DEBUG - Taking top 8 variants by coverage in window 9:70721490-70721505
2012-10-07 17:49:54,147 - DEBUG - Taking top 8 variants by coverage in window 9:70721520-70721521
2012-10-07 17:49:55,428 - DEBUG - Taking top 8 variants by coverage in window 9:70737633-70737634
2012-10-07 17:49:56,065 - DEBUG - Taking top 8 variants by coverage in window 9:70742599-70742600
2012-10-07 17:49:56,314 - DEBUG - Taking top 8 variants by coverage in window 9:70744533-70744534
2012-10-07 17:49:56,943 - DEBUG - Taking top 8 variants by coverage in window 9:70758025-70758036
2012-10-07 17:49:56,951 - DEBUG - Taking top 8 variants by coverage in window 9:70758044-70758045
2012-10-07 17:49:57,002 - DEBUG - Taking top 8 variants by coverage in window 9:70758858-70758859
2012-10-07 17:49:57,019 - DEBUG - Taking top 8 variants by coverage in window 9:70758891-70758892
2012-10-07 17:49:57,104 - DEBUG - Taking top 8 variants by coverage in window 9:70759485-70759489
2012-10-07 17:49:57,365 - DEBUG - Taking top 8 variants by coverage in window 9:70761968-70761969
2012-10-07 17:49:57,444 - DEBUG - Taking top 8 variants by coverage in window 9:70762849-70762850
2012-10-07 17:49:57,746 - DEBUG - Taking top 8 variants by coverage in window 9:70768625-70768632
2012-10-07 17:49:57,888 - DEBUG - Taking top 8 variants by coverage in window 9:70768903-70768904
2012-10-07 17:49:57,974 - DEBUG - Taking top 8 variants by coverage in window 9:70769479-70769480
2012-10-07 17:49:57,985 - DEBUG - Taking top 8 variants by coverage in window 9:70769484-70769489
2012-10-07 17:49:58,019 - DEBUG - Taking top 8 variants by coverage in window 9:70769534-70769542
2012-10-07 17:49:58,574 - DEBUG - Taking top 8 variants by coverage in window 9:70777249-70777250
2012-10-07 17:49:58,797 - DEBUG - Taking top 8 variants by coverage in window 9:70780437-70780445
2012-10-07 17:49:59,459 - DEBUG - Taking top 8 variants by coverage in window 9:70789628-70789629
2012-10-07 17:49:59,830 - DEBUG - Taking top 8 variants by coverage in window 9:70793981-70793982
2012-10-07 17:50:00,104 - DEBUG - Taking top 8 variants by coverage in window 9:70796751-70796752
2012-10-07 17:50:00,479 - DEBUG - Taking top 8 variants by coverage in window 9:70802667-70802668
2012-10-07 17:50:00,580 - DEBUG - Taking top 8 variants by coverage in window 9:70803034-70803035
2012-10-07 17:50:00,645 - DEBUG - Taking top 8 variants by coverage in window 9:70803227-70803228
2012-10-07 17:50:00,919 - DEBUG - Taking top 8 variants by coverage in window 9:70804285-70804287
2012-10-07 17:50:01,087 - DEBUG - Taking top 8 variants by coverage in window 9:70804452-70804453
2012-10-07 17:50:01,390 - DEBUG - Taking top 8 variants by coverage in window 9:70805721-70805722
2012-10-07 17:50:01,516 - DEBUG - Taking top 8 variants by coverage in window 9:70807028-70807029
2012-10-07 17:50:01,665 - DEBUG - Taking top 8 variants by coverage in window 9:70809197-70809215
2012-10-07 17:50:02,032 - DEBUG - Taking top 8 variants by coverage in window 9:70812090-70812091
2012-10-07 17:50:02,054 - DEBUG - Taking top 8 variants by coverage in window 9:70812129-70812130
2012-10-07 17:50:03,110 - DEBUG - Taking top 8 variants by coverage in window 9:70829505-70829506
2012-10-07 17:50:03,215 - DEBUG - Taking top 8 variants by coverage in window 9:70830670-70830671
2012-10-07 17:50:03,495 - DEBUG - Taking top 8 variants by coverage in window 9:70832214-70832215
2012-10-07 17:50:03,986 - DEBUG - Taking top 8 variants by coverage in window 9:70836891-70836892
2012-10-07 17:50:03,997 - DEBUG - Taking top 8 variants by coverage in window 9:70836897-70836898
2012-10-07 17:50:04,170 - DEBUG - Taking top 8 variants by coverage in window 9:70837901-70837909
2012-10-07 17:50:04,893 - DEBUG - Taking top 8 variants by coverage in window 9:70841731-70841732
2012-10-07 17:50:05,159 - DEBUG - Taking top 8 variants by coverage in window 9:70844982-70844983
2012-10-07 17:50:05,979 - DEBUG - Taking top 8 variants by coverage in window 9:70854086-70854087
2012-10-07 17:50:06,266 - DEBUG - Taking top 8 variants by coverage in window 9:70856235-70856238
2012-10-07 17:50:06,797 - DEBUG - Taking top 8 variants by coverage in window 9:70859784-70859794
2012-10-07 17:50:06,841 - DEBUG - Taking top 8 variants by coverage in window 9:70859817-70859818
2012-10-07 17:50:07,247 - DEBUG - Taking top 8 variants by coverage in window 9:70864384-70864385
2012-10-07 17:50:07,501 - DEBUG - Taking top 8 variants by coverage in window 9:70867305-70867306
2012-10-07 17:50:07,915 - DEBUG - Taking top 8 variants by coverage in window 9:70871890-70871891
2012-10-07 17:50:08,097 - DEBUG - Taking top 8 variants by coverage in window 9:70873357-70873358
2012-10-07 17:50:08,291 - DEBUG - Taking top 8 variants by coverage in window 9:70875195-70875196
2012-10-07 17:50:08,503 - DEBUG - Taking top 8 variants by coverage in window 9:70878732-70878733
2012-10-07 17:50:09,321 - DEBUG - Taking top 8 variants by coverage in window 9:70886983-70886984
2012-10-07 17:50:09,332 - DEBUG - Taking top 8 variants by coverage in window 9:70886997-70886998
2012-10-07 17:50:10,418 - DEBUG - Taking top 8 variants by coverage in window 9:70900953-70900954
2012-10-07 17:50:10,970 - DEBUG - Taking top 8 variants by coverage in window 9:70908596-70908597
2012-10-07 17:50:11,729 - DEBUG - Taking top 8 variants by coverage in window 9:70923659-70923660
2012-10-07 17:50:12,141 - DEBUG - Taking top 8 variants by coverage in window 9:70927994-70927995
2012-10-07 17:50:12,227 - DEBUG - Taking top 8 variants by coverage in window 9:70928215-70928216
2012-10-07 17:50:12,339 - DEBUG - Taking top 8 variants by coverage in window 9:70939077-70939078
2012-10-07 17:50:12,426 - DEBUG - Taking top 8 variants by coverage in window 9:70939624-70939625
2012-10-07 17:50:12,639 - DEBUG - Taking top 8 variants by coverage in window 9:70942224-70942225
2012-10-07 17:50:13,252 - DEBUG - Taking top 8 variants by coverage in window 9:70950232-70950233
2012-10-07 17:50:13,301 - DEBUG - Taking top 8 variants by coverage in window 9:70950477-70950478
2012-10-07 17:50:13,694 - DEBUG - Taking top 8 variants by coverage in window 9:70954427-70954428
2012-10-07 17:50:13,942 - DEBUG - Taking top 8 variants by coverage in window 9:70956350-70956351
2012-10-07 17:50:14,127 - DEBUG - Taking top 8 variants by coverage in window 9:70957284-70957285
2012-10-07 17:50:14,558 - DEBUG - Taking top 8 variants by coverage in window 9:70962240-70962243
2012-10-07 17:50:15,110 - DEBUG - Taking top 8 variants by coverage in window 9:70968672-70968673
2012-10-07 17:50:15,227 - DEBUG - Taking top 8 variants by coverage in window 9:70969726-70969727
2012-10-07 17:50:15,323 - DEBUG - Taking top 8 variants by coverage in window 9:70969900-70969901
2012-10-07 17:50:15,335 - DEBUG - Taking top 8 variants by coverage in window 9:70969901-70969902
2012-10-07 17:50:15,652 - DEBUG - Taking top 8 variants by coverage in window 9:70971112-70971113
2012-10-07 17:50:15,656 - DEBUG - Taking top 8 variants by coverage in window 9:70971113-70971116
2012-10-07 17:50:16,109 - DEBUG - Taking top 8 variants by coverage in window 9:70973528-70973529
2012-10-07 17:50:17,583 - DEBUG - Taking top 8 variants by coverage in window 9:70988827-70988830
2012-10-07 17:50:17,683 - DEBUG - Taking top 8 variants by coverage in window 9:70989251-70989252
2012-10-07 17:50:18,125 - DEBUG - Taking top 8 variants by coverage in window 9:70993173-70993174
2012-10-07 17:50:18,149 - DEBUG - Taking top 8 variants by coverage in window 9:70993177-70993178
2012-10-07 17:50:18,813 - DEBUG - Taking top 8 variants by coverage in window 9:70999787-70999797
2012-10-07 17:50:19,853 - DEBUG - Read 96022 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 17:50:20,092 - DEBUG - Read 104201 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 17:50:20,347 - DEBUG - Read 120805 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 17:50:20,633 - DEBUG - Read 122124 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 17:50:20,904 - DEBUG - Read 115471 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 17:50:21,147 - DEBUG - Read 108983 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 17:50:21,399 - DEBUG - Read 115668 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 17:50:21,646 - DEBUG - Read 105283 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 17:50:21,878 - DEBUG - Read 99641 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 17:50:22,114 - DEBUG - Read 100536 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 17:50:22,370 - DEBUG - Read 113390 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 17:50:22,594 - DEBUG - Read 100202 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 17:50:22,827 - DEBUG - Read 101257 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 17:50:23,065 - DEBUG - Read 113035 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 17:50:23,329 - DEBUG - Read 121720 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 17:50:23,547 - DEBUG - Read 91432 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 17:50:23,796 - DEBUG - Read 117190 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 17:50:24,050 - DEBUG - Read 111260 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 17:50:24,267 - DEBUG - Read 97062 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 17:50:24,585 - DEBUG - Read 97466 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 17:50:24,680 - DEBUG - Detected 20111 variants in 96022 reads
2012-10-07 17:50:24,832 - DEBUG - Detected 29021 variants in 104201 reads
2012-10-07 17:50:25,048 - DEBUG - Detected 36680 variants in 120805 reads
2012-10-07 17:50:25,277 - DEBUG - Detected 43350 variants in 122124 reads
2012-10-07 17:50:25,522 - DEBUG - Detected 48785 variants in 115471 reads
2012-10-07 17:50:25,791 - DEBUG - Detected 54065 variants in 108983 reads
2012-10-07 17:50:26,096 - DEBUG - Detected 66842 variants in 115668 reads
2012-10-07 17:50:26,452 - DEBUG - Detected 71990 variants in 105283 reads
2012-10-07 17:50:26,829 - DEBUG - Detected 77488 variants in 99641 reads
2012-10-07 17:50:27,230 - DEBUG - Detected 82786 variants in 100536 reads
2012-10-07 17:50:27,703 - DEBUG - Detected 87259 variants in 113390 reads
2012-10-07 17:50:28,147 - DEBUG - Detected 90616 variants in 100202 reads
2012-10-07 17:50:28,604 - DEBUG - Detected 94124 variants in 101257 reads
2012-10-07 17:50:29,087 - DEBUG - Detected 98071 variants in 113035 reads
2012-10-07 17:50:29,601 - DEBUG - Detected 104796 variants in 121720 reads
2012-10-07 17:50:30,118 - DEBUG - Detected 108343 variants in 91432 reads
2012-10-07 17:50:30,732 - DEBUG - Detected 111816 variants in 117190 reads
2012-10-07 17:50:31,303 - DEBUG - Detected 115366 variants in 111260 reads
2012-10-07 17:50:31,875 - DEBUG - Detected 119171 variants in 97062 reads
2012-10-07 17:50:32,463 - DEBUG - Detected 123073 variants in 97466 reads
2012-10-07 17:50:33,697 - DEBUG - Taking top 8 variants by coverage in window 9:71003453-71003454
2012-10-07 17:50:34,228 - DEBUG - Taking top 8 variants by coverage in window 9:71009026-71009027
2012-10-07 17:50:35,168 - DEBUG - Taking top 8 variants by coverage in window 9:71024518-71024519
2012-10-07 17:50:36,076 - DEBUG - Taking top 8 variants by coverage in window 9:71037451-71037453
2012-10-07 17:50:36,169 - DEBUG - Taking top 8 variants by coverage in window 9:71045520-71045523
2012-10-07 17:50:37,618 - DEBUG - Taking top 8 variants by coverage in window 9:71066337-71066340
2012-10-07 17:50:37,955 - DEBUG - Taking top 8 variants by coverage in window 9:71073485-71073486
2012-10-07 17:50:37,965 - DEBUG - Taking top 8 variants by coverage in window 9:71073498-71073499
2012-10-07 17:50:38,436 - DEBUG - Taking top 8 variants by coverage in window 9:71080831-71080832
2012-10-07 17:50:38,492 - DEBUG - Taking top 8 variants by coverage in window 9:71081375-71081379
2012-10-07 17:50:38,659 - DEBUG - Taking top 8 variants by coverage in window 9:71082012-71082013
2012-10-07 17:50:39,016 - DEBUG - Taking top 8 variants by coverage in window 9:71087288-71087291
2012-10-07 17:50:39,270 - DEBUG - Taking top 8 variants by coverage in window 9:71088873-71088879
2012-10-07 17:50:40,410 - DEBUG - Taking top 8 variants by coverage in window 9:71109001-71109002
2012-10-07 17:50:40,437 - DEBUG - Taking top 8 variants by coverage in window 9:71109039-71109040
2012-10-07 17:50:40,807 - DEBUG - Taking top 8 variants by coverage in window 9:71109351-71109352
2012-10-07 17:50:41,325 - DEBUG - Taking top 8 variants by coverage in window 9:71116573-71116575
2012-10-07 17:50:43,230 - DEBUG - Taking top 8 variants by coverage in window 9:71142178-71142179
2012-10-07 17:50:43,633 - DEBUG - Taking top 8 variants by coverage in window 9:71147047-71147048
2012-10-07 17:50:43,735 - DEBUG - Taking top 8 variants by coverage in window 9:71148170-71148171
2012-10-07 17:50:43,742 - DEBUG - Taking top 8 variants by coverage in window 9:71148171-71148172
2012-10-07 17:50:43,867 - DEBUG - Taking top 8 variants by coverage in window 9:71149494-71149495
2012-10-07 17:50:44,195 - DEBUG - Taking top 8 variants by coverage in window 9:71153857-71153858
2012-10-07 17:50:44,236 - DEBUG - Taking top 8 variants by coverage in window 9:71153859-71153860
2012-10-07 17:50:44,321 - DEBUG - Taking top 8 variants by coverage in window 9:71153861-71153864
2012-10-07 17:50:44,607 - DEBUG - Taking top 8 variants by coverage in window 9:71156676-71156678
2012-10-07 17:50:46,433 - DEBUG - Taking top 8 variants by coverage in window 9:71181041-71181042
2012-10-07 17:50:46,997 - DEBUG - Taking top 8 variants by coverage in window 9:71188077-71188081
2012-10-07 17:50:47,333 - DEBUG - Taking top 8 variants by coverage in window 9:71192696-71192697
2012-10-07 17:50:47,545 - DEBUG - Taking top 8 variants by coverage in window 9:71193373-71193375
2012-10-07 17:50:47,648 - DEBUG - Taking top 8 variants by coverage in window 9:71194414-71194418
2012-10-07 17:50:48,333 - DEBUG - Taking top 8 variants by coverage in window 9:71201498-71201500
2012-10-07 17:50:48,384 - DEBUG - Taking top 8 variants by coverage in window 9:71201518-71201519
2012-10-07 17:50:48,507 - DEBUG - Taking top 8 variants by coverage in window 9:71202698-71202699
2012-10-07 17:50:49,465 - DEBUG - Taking top 8 variants by coverage in window 9:71220127-71220128
2012-10-07 17:50:49,710 - DEBUG - Taking top 8 variants by coverage in window 9:71224043-71224048
2012-10-07 17:50:49,833 - DEBUG - Taking top 8 variants by coverage in window 9:71225502-71225506
2012-10-07 17:50:49,921 - DEBUG - Taking top 8 variants by coverage in window 9:71226753-71226754
2012-10-07 17:50:51,059 - DEBUG - Taking top 8 variants by coverage in window 9:71240135-71240136
2012-10-07 17:50:51,102 - DEBUG - Taking top 8 variants by coverage in window 9:71240141-71240145
2012-10-07 17:50:51,290 - DEBUG - Taking top 8 variants by coverage in window 9:71240882-71240883
2012-10-07 17:50:51,408 - DEBUG - Taking top 8 variants by coverage in window 9:71241546-71241547
2012-10-07 17:50:51,930 - DEBUG - Taking top 8 variants by coverage in window 9:71248129-71248131
2012-10-07 17:50:52,289 - DEBUG - Taking top 8 variants by coverage in window 9:71250032-71250033
2012-10-07 17:50:53,114 - DEBUG - Taking top 8 variants by coverage in window 9:71263195-71263196
2012-10-07 17:50:53,914 - DEBUG - Taking top 8 variants by coverage in window 9:71268430-71268431
2012-10-07 17:50:54,010 - DEBUG - Taking top 8 variants by coverage in window 9:71282422-71282423
2012-10-07 17:50:54,713 - DEBUG - Taking top 8 variants by coverage in window 9:71286397-71286398
2012-10-07 17:50:54,734 - DEBUG - Taking top 8 variants by coverage in window 9:71286400-71286402
2012-10-07 17:50:55,070 - DEBUG - Taking top 8 variants by coverage in window 9:71289400-71289401
2012-10-07 17:50:55,987 - DEBUG - Taking top 8 variants by coverage in window 9:71303018-71303020
2012-10-07 17:50:56,304 - DEBUG - Taking top 8 variants by coverage in window 9:71307266-71307267
2012-10-07 17:50:56,426 - DEBUG - Taking top 8 variants by coverage in window 9:71309417-71309418
2012-10-07 17:50:56,620 - DEBUG - Taking top 8 variants by coverage in window 9:71311761-71311762
2012-10-07 17:50:56,891 - DEBUG - Taking top 8 variants by coverage in window 9:71316420-71316431
2012-10-07 17:50:56,950 - DEBUG - Taking top 8 variants by coverage in window 9:71316499-71316500
2012-10-07 17:50:57,284 - DEBUG - Taking top 8 variants by coverage in window 9:71321714-71321716
2012-10-07 17:50:57,291 - DEBUG - Taking top 8 variants by coverage in window 9:71321717-71321718
2012-10-07 17:50:57,403 - DEBUG - Taking top 8 variants by coverage in window 9:71322683-71322684
2012-10-07 17:50:58,434 - DEBUG - Taking top 8 variants by coverage in window 9:71347453-71347455
2012-10-07 17:50:58,924 - DEBUG - Taking top 8 variants by coverage in window 9:71351607-71351609
2012-10-07 17:50:58,992 - DEBUG - Taking top 8 variants by coverage in window 9:71351684-71351685
2012-10-07 17:50:59,097 - DEBUG - Taking top 8 variants by coverage in window 9:71353763-71353764
2012-10-07 17:50:59,110 - DEBUG - Taking top 8 variants by coverage in window 9:71353778-71353779
2012-10-07 17:51:00,066 - DEBUG - Taking top 8 variants by coverage in window 9:71362622-71362623
2012-10-07 17:51:00,124 - DEBUG - Taking top 8 variants by coverage in window 9:71363341-71363342
2012-10-07 17:51:00,383 - DEBUG - Taking top 8 variants by coverage in window 9:71367343-71367344
2012-10-07 17:51:00,393 - DEBUG - Taking top 8 variants by coverage in window 9:71367355-71367356
2012-10-07 17:51:00,702 - DEBUG - Taking top 8 variants by coverage in window 9:71371388-71371389
2012-10-07 17:51:01,011 - DEBUG - Taking top 8 variants by coverage in window 9:71375288-71375289
2012-10-07 17:51:01,314 - DEBUG - Taking top 8 variants by coverage in window 9:71380611-71380612
2012-10-07 17:51:01,401 - DEBUG - Taking top 8 variants by coverage in window 9:71380663-71380664
2012-10-07 17:51:01,506 - DEBUG - Taking top 8 variants by coverage in window 9:71382462-71382471
2012-10-07 17:51:02,101 - DEBUG - Taking top 8 variants by coverage in window 9:71388843-71388858
2012-10-07 17:51:02,270 - DEBUG - Taking top 8 variants by coverage in window 9:71390279-71390280
2012-10-07 17:51:02,346 - DEBUG - Taking top 8 variants by coverage in window 9:71390837-71390848
2012-10-07 17:51:03,021 - DEBUG - Taking top 8 variants by coverage in window 9:71396429-71396431
2012-10-07 17:51:03,082 - DEBUG - Taking top 8 variants by coverage in window 9:71396451-71396452
2012-10-07 17:51:03,315 - DEBUG - Taking top 8 variants by coverage in window 9:71397493-71397507
2012-10-07 17:51:03,468 - DEBUG - Taking top 8 variants by coverage in window 9:71397601-71397602
2012-10-07 17:51:03,524 - DEBUG - Taking top 8 variants by coverage in window 9:71397935-71397943
2012-10-07 17:51:03,640 - DEBUG - Taking top 8 variants by coverage in window 9:71397970-71397971
2012-10-07 17:51:03,658 - DEBUG - Taking top 8 variants by coverage in window 9:71397971-71397972
2012-10-07 17:51:03,702 - DEBUG - Taking top 8 variants by coverage in window 9:71397987-71397992
2012-10-07 17:51:03,829 - DEBUG - Taking top 8 variants by coverage in window 9:71399125-71399140
2012-10-07 17:51:04,029 - DEBUG - Taking top 8 variants by coverage in window 9:71401082-71401094
2012-10-07 17:51:04,150 - DEBUG - Taking top 8 variants by coverage in window 9:71401124-71401139
2012-10-07 17:51:04,769 - DEBUG - Taking top 8 variants by coverage in window 9:71410556-71410557
2012-10-07 17:51:04,948 - DEBUG - Taking top 8 variants by coverage in window 9:71413527-71413528
2012-10-07 17:51:05,331 - DEBUG - Taking top 8 variants by coverage in window 9:71417689-71417693
2012-10-07 17:51:05,395 - DEBUG - Taking top 8 variants by coverage in window 9:71417702-71417707
2012-10-07 17:51:05,479 - DEBUG - Taking top 8 variants by coverage in window 9:71417747-71417752
2012-10-07 17:51:05,554 - DEBUG - Taking top 8 variants by coverage in window 9:71417761-71417766
2012-10-07 17:51:05,634 - DEBUG - Taking top 8 variants by coverage in window 9:71417767-71417771
2012-10-07 17:51:05,789 - DEBUG - Taking top 8 variants by coverage in window 9:71417830-71417836
2012-10-07 17:51:06,088 - DEBUG - Taking top 8 variants by coverage in window 9:71418693-71418694
2012-10-07 17:51:06,318 - DEBUG - Taking top 8 variants by coverage in window 9:71422173-71422174
2012-10-07 17:51:07,132 - DEBUG - Taking top 8 variants by coverage in window 9:71432333-71432334
2012-10-07 17:51:07,149 - DEBUG - Taking top 8 variants by coverage in window 9:71432540-71432541
2012-10-07 17:51:07,682 - DEBUG - Taking top 8 variants by coverage in window 9:71441216-71441217
2012-10-07 17:51:08,008 - DEBUG - Taking top 8 variants by coverage in window 9:71443964-71443965
2012-10-07 17:51:09,290 - DEBUG - Taking top 8 variants by coverage in window 9:71457094-71457095
2012-10-07 17:51:09,699 - DEBUG - Taking top 8 variants by coverage in window 9:71461040-71461041
2012-10-07 17:51:09,716 - DEBUG - Taking top 8 variants by coverage in window 9:71461042-71461043
2012-10-07 17:51:10,136 - DEBUG - Taking top 8 variants by coverage in window 9:71463695-71463696
2012-10-07 17:51:10,603 - DEBUG - Taking top 8 variants by coverage in window 9:71466674-71466675
2012-10-07 17:51:11,561 - DEBUG - Taking top 8 variants by coverage in window 9:71479151-71479152
2012-10-07 17:51:11,591 - DEBUG - Taking top 8 variants by coverage in window 9:71479170-71479172
2012-10-07 17:51:12,130 - DEBUG - Taking top 8 variants by coverage in window 9:71479203-71479204
2012-10-07 17:51:12,881 - DEBUG - Taking top 8 variants by coverage in window 9:71489303-71489304
2012-10-07 17:51:13,144 - DEBUG - Taking top 8 variants by coverage in window 9:71491334-71491337
2012-10-07 17:51:13,444 - DEBUG - Taking top 8 variants by coverage in window 9:71491903-71491904
2012-10-07 17:51:13,482 - DEBUG - Taking top 8 variants by coverage in window 9:71492455-71492456
2012-10-07 17:51:13,912 - DEBUG - Taking top 8 variants by coverage in window 9:71497311-71497312
2012-10-07 17:51:14,331 - DEBUG - Taking top 8 variants by coverage in window 9:71501205-71501206
2012-10-07 17:51:14,793 - DEBUG - Taking top 8 variants by coverage in window 9:71508170-71508171
2012-10-07 17:51:15,005 - DEBUG - Taking top 8 variants by coverage in window 9:71509933-71509934
2012-10-07 17:51:15,751 - DEBUG - Taking top 8 variants by coverage in window 9:71519936-71519937
2012-10-07 17:51:15,894 - DEBUG - Taking top 8 variants by coverage in window 9:71521282-71521283
2012-10-07 17:51:15,939 - DEBUG - Taking top 8 variants by coverage in window 9:71521312-71521313
2012-10-07 17:51:16,970 - DEBUG - Taking top 8 variants by coverage in window 9:71534212-71534213
2012-10-07 17:51:17,043 - DEBUG - Taking top 8 variants by coverage in window 9:71534300-71534301
2012-10-07 17:51:17,148 - DEBUG - Taking top 8 variants by coverage in window 9:71536842-71536843
2012-10-07 17:51:17,333 - DEBUG - Taking top 8 variants by coverage in window 9:71539900-71539901
2012-10-07 17:51:17,374 - DEBUG - Taking top 8 variants by coverage in window 9:71539988-71539989
2012-10-07 17:51:17,394 - DEBUG - Taking top 8 variants by coverage in window 9:71540016-71540017
2012-10-07 17:51:17,492 - DEBUG - Taking top 8 variants by coverage in window 9:71541123-71541124
2012-10-07 17:51:17,940 - DEBUG - Taking top 8 variants by coverage in window 9:71546707-71546708
2012-10-07 17:51:18,441 - DEBUG - Taking top 8 variants by coverage in window 9:71554576-71554578
2012-10-07 17:51:18,850 - DEBUG - Taking top 8 variants by coverage in window 9:71556923-71556924
2012-10-07 17:51:19,037 - DEBUG - Taking top 8 variants by coverage in window 9:71558375-71558376
2012-10-07 17:51:19,304 - DEBUG - Taking top 8 variants by coverage in window 9:71559585-71559586
2012-10-07 17:51:19,443 - DEBUG - Taking top 8 variants by coverage in window 9:71560527-71560530
2012-10-07 17:51:19,626 - DEBUG - Taking top 8 variants by coverage in window 9:71562407-71562408
2012-10-07 17:51:19,990 - DEBUG - Taking top 8 variants by coverage in window 9:71567197-71567199
2012-10-07 17:51:20,302 - DEBUG - Taking top 8 variants by coverage in window 9:71571736-71571737
2012-10-07 17:51:20,437 - DEBUG - Taking top 8 variants by coverage in window 9:71572050-71572051
2012-10-07 17:51:20,494 - DEBUG - Taking top 8 variants by coverage in window 9:71572111-71572112
2012-10-07 17:51:20,801 - DEBUG - Taking top 8 variants by coverage in window 9:71577773-71577774
2012-10-07 17:51:21,167 - DEBUG - Taking top 8 variants by coverage in window 9:71586704-71586705
2012-10-07 17:51:21,329 - DEBUG - Taking top 8 variants by coverage in window 9:71589860-71589861
2012-10-07 17:51:21,591 - DEBUG - Taking top 8 variants by coverage in window 9:71595732-71595733
2012-10-07 17:51:21,618 - DEBUG - Taking top 8 variants by coverage in window 9:71595749-71595750
2012-10-07 17:51:21,922 - DEBUG - Taking top 8 variants by coverage in window 9:71600076-71600077
2012-10-07 17:51:22,277 - DEBUG - Taking top 8 variants by coverage in window 9:71608156-71608157
2012-10-07 17:51:22,307 - DEBUG - Taking top 8 variants by coverage in window 9:71608227-71608228
2012-10-07 17:51:22,366 - DEBUG - Taking top 8 variants by coverage in window 9:71608440-71608441
2012-10-07 17:51:22,575 - DEBUG - Taking top 8 variants by coverage in window 9:71612524-71612526
2012-10-07 17:51:22,611 - DEBUG - Taking top 8 variants by coverage in window 9:71612548-71612549
2012-10-07 17:51:22,682 - DEBUG - Taking top 8 variants by coverage in window 9:71613394-71613395
2012-10-07 17:51:22,843 - DEBUG - Taking top 8 variants by coverage in window 9:71616340-71616349
2012-10-07 17:51:24,606 - DEBUG - Taking top 8 variants by coverage in window 9:71645888-71645892
2012-10-07 17:51:24,830 - DEBUG - Taking top 8 variants by coverage in window 9:71649355-71649356
2012-10-07 17:51:24,966 - DEBUG - Taking top 8 variants by coverage in window 9:71651984-71651985
2012-10-07 17:51:24,987 - DEBUG - Taking top 8 variants by coverage in window 9:71651996-71651997
2012-10-07 17:51:25,087 - DEBUG - Taking top 8 variants by coverage in window 9:71652956-71652957
2012-10-07 17:51:25,184 - DEBUG - Taking top 8 variants by coverage in window 9:71654941-71654949
2012-10-07 17:51:25,197 - DEBUG - Taking top 8 variants by coverage in window 9:71654957-71654958
2012-10-07 17:51:25,847 - DEBUG - Taking top 8 variants by coverage in window 9:71673175-71673176
2012-10-07 17:51:26,010 - DEBUG - Taking top 8 variants by coverage in window 9:71676493-71676494
2012-10-07 17:51:26,167 - DEBUG - Taking top 8 variants by coverage in window 9:71678742-71678743
2012-10-07 17:51:26,245 - DEBUG - Taking top 8 variants by coverage in window 9:71682200-71682201
2012-10-07 17:51:26,960 - DEBUG - Taking top 8 variants by coverage in window 9:71691672-71691673
2012-10-07 17:51:27,347 - DEBUG - Taking top 8 variants by coverage in window 9:71699976-71699977
2012-10-07 17:51:27,513 - DEBUG - Taking top 8 variants by coverage in window 9:71703459-71703460
2012-10-07 17:51:27,647 - DEBUG - Taking top 8 variants by coverage in window 9:71706837-71706841
2012-10-07 17:51:27,889 - DEBUG - Taking top 8 variants by coverage in window 9:71714745-71714746
2012-10-07 17:51:28,103 - DEBUG - Taking top 8 variants by coverage in window 9:71721113-71721114
2012-10-07 17:51:28,374 - DEBUG - Taking top 8 variants by coverage in window 9:71732429-71732430
2012-10-07 17:51:28,474 - DEBUG - Taking top 8 variants by coverage in window 9:71732452-71732453
2012-10-07 17:51:28,527 - DEBUG - Taking top 8 variants by coverage in window 9:71732459-71732460
2012-10-07 17:51:28,590 - DEBUG - Taking top 8 variants by coverage in window 9:71732498-71732499
2012-10-07 17:51:28,623 - DEBUG - Taking top 8 variants by coverage in window 9:71732500-71732501
2012-10-07 17:51:28,646 - DEBUG - Taking top 8 variants by coverage in window 9:71732502-71732504
2012-10-07 17:51:29,469 - DEBUG - Taking top 8 variants by coverage in window 9:71749322-71749323
2012-10-07 17:51:29,588 - DEBUG - Taking top 8 variants by coverage in window 9:71752237-71752238
2012-10-07 17:51:29,849 - DEBUG - Taking top 8 variants by coverage in window 9:71757111-71757112
2012-10-07 17:51:29,897 - DEBUG - Taking top 8 variants by coverage in window 9:71757127-71757128
2012-10-07 17:51:30,283 - DEBUG - Taking top 8 variants by coverage in window 9:71766936-71766937
2012-10-07 17:51:30,417 - DEBUG - Taking top 8 variants by coverage in window 9:71771442-71771444
2012-10-07 17:51:30,442 - DEBUG - Taking top 8 variants by coverage in window 9:71771632-71771633
2012-10-07 17:51:30,629 - DEBUG - Taking top 8 variants by coverage in window 9:71782266-71782267
2012-10-07 17:51:30,692 - DEBUG - Taking top 8 variants by coverage in window 9:71783531-71783532
2012-10-07 17:51:30,822 - DEBUG - Taking top 8 variants by coverage in window 9:71784798-71784802
2012-10-07 17:51:30,945 - DEBUG - Taking top 8 variants by coverage in window 9:71786088-71786107
2012-10-07 17:51:31,478 - DEBUG - Taking top 8 variants by coverage in window 9:71797108-71797109
2012-10-07 17:51:31,552 - DEBUG - Taking top 8 variants by coverage in window 9:71801556-71801557
2012-10-07 17:51:31,802 - DEBUG - Taking top 8 variants by coverage in window 9:71809110-71809116
2012-10-07 17:51:31,826 - DEBUG - Taking top 8 variants by coverage in window 9:71809163-71809164
2012-10-07 17:51:31,941 - DEBUG - Taking top 8 variants by coverage in window 9:71812809-71812811
2012-10-07 17:51:31,967 - DEBUG - Taking top 8 variants by coverage in window 9:71820034-71820035
2012-10-07 17:51:32,387 - DEBUG - Taking top 8 variants by coverage in window 9:71836555-71836556
2012-10-07 17:51:32,515 - DEBUG - Taking top 8 variants by coverage in window 9:71843713-71843714
2012-10-07 17:51:32,714 - DEBUG - Taking top 8 variants by coverage in window 9:71845515-71845517
2012-10-07 17:51:33,112 - DEBUG - Taking top 8 variants by coverage in window 9:71860185-71860186
2012-10-07 17:51:33,458 - DEBUG - Taking top 8 variants by coverage in window 9:71872034-71872035
2012-10-07 17:51:33,806 - DEBUG - Taking top 8 variants by coverage in window 9:71886102-71886103
2012-10-07 17:51:34,510 - DEBUG - Taking top 8 variants by coverage in window 9:71910595-71910596
2012-10-07 17:51:34,706 - DEBUG - Taking top 8 variants by coverage in window 9:71920406-71920407
2012-10-07 17:51:35,094 - DEBUG - Taking top 8 variants by coverage in window 9:71940050-71940051
2012-10-07 17:51:35,992 - DEBUG - Taking top 8 variants by coverage in window 9:71958741-71958742
2012-10-07 17:51:36,100 - DEBUG - Taking top 8 variants by coverage in window 9:71961214-71961215
2012-10-07 17:51:36,118 - DEBUG - Taking top 8 variants by coverage in window 9:71961227-71961228
2012-10-07 17:51:36,365 - DEBUG - Taking top 8 variants by coverage in window 9:71964535-71964539
2012-10-07 17:51:36,371 - DEBUG - Taking top 8 variants by coverage in window 9:71964541-71964566
2012-10-07 17:51:36,520 - DEBUG - Taking top 8 variants by coverage in window 9:71966702-71966703
2012-10-07 17:51:36,603 - DEBUG - Taking top 8 variants by coverage in window 9:71968069-71968070
2012-10-07 17:51:38,302 - DEBUG - Read 92104 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 17:51:38,535 - DEBUG - Read 99670 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 17:51:38,789 - DEBUG - Read 117152 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 17:51:39,072 - DEBUG - Read 116832 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 17:51:39,340 - DEBUG - Read 110370 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 17:51:39,579 - DEBUG - Read 105313 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 17:51:39,829 - DEBUG - Read 110535 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 17:51:40,072 - DEBUG - Read 100563 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 17:51:40,301 - DEBUG - Read 96331 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 17:51:40,534 - DEBUG - Read 96673 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 17:51:40,785 - DEBUG - Read 107294 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 17:51:41,006 - DEBUG - Read 95540 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 17:51:41,238 - DEBUG - Read 96443 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 17:51:41,511 - DEBUG - Read 108738 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 17:51:41,770 - DEBUG - Read 116003 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 17:51:41,987 - DEBUG - Read 87896 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 17:51:42,230 - DEBUG - Read 111808 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 17:51:42,483 - DEBUG - Read 108056 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 17:51:42,693 - DEBUG - Read 91335 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 17:51:42,921 - DEBUG - Read 92190 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 17:51:43,026 - DEBUG - Detected 22205 variants in 92104 reads
2012-10-07 17:51:43,187 - DEBUG - Detected 30813 variants in 99670 reads
2012-10-07 17:51:43,399 - DEBUG - Detected 40590 variants in 117152 reads
2012-10-07 17:51:43,646 - DEBUG - Detected 48530 variants in 116832 reads
2012-10-07 17:51:43,921 - DEBUG - Detected 54220 variants in 110370 reads
2012-10-07 17:51:44,216 - DEBUG - Detected 59736 variants in 105313 reads
2012-10-07 17:51:44,545 - DEBUG - Detected 72642 variants in 110535 reads
2012-10-07 17:51:44,947 - DEBUG - Detected 77606 variants in 100563 reads
2012-10-07 17:51:45,341 - DEBUG - Detected 82979 variants in 96331 reads
2012-10-07 17:51:45,763 - DEBUG - Detected 87575 variants in 96673 reads
2012-10-07 17:51:46,209 - DEBUG - Detected 92351 variants in 107294 reads
2012-10-07 17:51:46,665 - DEBUG - Detected 96146 variants in 95540 reads
2012-10-07 17:51:47,134 - DEBUG - Detected 99837 variants in 96443 reads
2012-10-07 17:51:47,669 - DEBUG - Detected 104162 variants in 108738 reads
2012-10-07 17:51:48,193 - DEBUG - Detected 111407 variants in 116003 reads
2012-10-07 17:51:48,725 - DEBUG - Detected 115106 variants in 87896 reads
2012-10-07 17:51:49,298 - DEBUG - Detected 118969 variants in 111808 reads
2012-10-07 17:51:49,886 - DEBUG - Detected 123095 variants in 108056 reads
2012-10-07 17:51:50,520 - DEBUG - Detected 126871 variants in 91335 reads
2012-10-07 17:51:51,120 - DEBUG - Detected 130953 variants in 92190 reads
2012-10-07 17:51:52,048 - DEBUG - Taking top 8 variants by coverage in window 9:72003051-72003052
2012-10-07 17:51:52,099 - DEBUG - Taking top 8 variants by coverage in window 9:72003895-72003896
2012-10-07 17:51:52,125 - DEBUG - Taking top 8 variants by coverage in window 9:72003912-72003913
2012-10-07 17:51:52,324 - DEBUG - Taking top 8 variants by coverage in window 9:72006803-72006804
2012-10-07 17:51:52,374 - DEBUG - Taking top 8 variants by coverage in window 9:72008318-72008319
2012-10-07 17:51:52,383 - DEBUG - Taking top 8 variants by coverage in window 9:72008335-72008336
2012-10-07 17:51:52,936 - DEBUG - Taking top 8 variants by coverage in window 9:72017276-72017277
2012-10-07 17:51:53,077 - DEBUG - Taking top 8 variants by coverage in window 9:72018796-72018798
2012-10-07 17:51:53,160 - DEBUG - Taking top 8 variants by coverage in window 9:72018829-72018830
2012-10-07 17:51:53,263 - DEBUG - Taking top 8 variants by coverage in window 9:72018908-72018909
2012-10-07 17:51:53,404 - DEBUG - Taking top 8 variants by coverage in window 9:72018942-72018943
2012-10-07 17:51:53,745 - DEBUG - Taking top 8 variants by coverage in window 9:72022300-72022304
2012-10-07 17:51:53,779 - DEBUG - Taking top 8 variants by coverage in window 9:72022811-72022812
2012-10-07 17:51:54,087 - DEBUG - Taking top 8 variants by coverage in window 9:72035046-72035066
2012-10-07 17:51:55,599 - DEBUG - Taking top 8 variants by coverage in window 9:72049407-72049409
2012-10-07 17:51:55,658 - DEBUG - Taking top 8 variants by coverage in window 9:72050651-72050652
2012-10-07 17:51:55,675 - DEBUG - Taking top 8 variants by coverage in window 9:72050671-72050673
2012-10-07 17:51:55,991 - DEBUG - Taking top 8 variants by coverage in window 9:72061325-72061330
2012-10-07 17:51:56,242 - DEBUG - Taking top 8 variants by coverage in window 9:72063353-72063354
2012-10-07 17:51:56,470 - DEBUG - Taking top 8 variants by coverage in window 9:72066568-72066578
2012-10-07 17:51:56,528 - DEBUG - Taking top 8 variants by coverage in window 9:72066579-72066585
2012-10-07 17:51:56,736 - DEBUG - Taking top 8 variants by coverage in window 9:72070696-72070697
2012-10-07 17:51:56,767 - DEBUG - Taking top 8 variants by coverage in window 9:72071273-72071274
2012-10-07 17:51:56,786 - DEBUG - Taking top 8 variants by coverage in window 9:72072055-72072056
2012-10-07 17:51:56,980 - DEBUG - Taking top 8 variants by coverage in window 9:72076874-72076875
2012-10-07 17:51:57,178 - DEBUG - Taking top 8 variants by coverage in window 9:72080249-72080250
2012-10-07 17:51:57,242 - DEBUG - Taking top 8 variants by coverage in window 9:72081216-72081217
2012-10-07 17:51:57,417 - DEBUG - Taking top 8 variants by coverage in window 9:72086182-72086183
2012-10-07 17:51:57,428 - DEBUG - Taking top 8 variants by coverage in window 9:72086194-72086195
2012-10-07 17:51:57,665 - DEBUG - Taking top 8 variants by coverage in window 9:72089046-72089047
2012-10-07 17:51:57,684 - DEBUG - Taking top 8 variants by coverage in window 9:72089164-72089165
2012-10-07 17:51:59,044 - DEBUG - Taking top 8 variants by coverage in window 9:72105079-72105080
2012-10-07 17:51:59,128 - DEBUG - Taking top 8 variants by coverage in window 9:72105939-72105941
2012-10-07 17:51:59,361 - DEBUG - Taking top 8 variants by coverage in window 9:72108103-72108108
2012-10-07 17:51:59,667 - DEBUG - Taking top 8 variants by coverage in window 9:72111718-72111719
2012-10-07 17:51:59,776 - DEBUG - Taking top 8 variants by coverage in window 9:72112565-72112566
2012-10-07 17:52:00,025 - DEBUG - Taking top 8 variants by coverage in window 9:72116977-72116980
2012-10-07 17:52:00,587 - DEBUG - Taking top 8 variants by coverage in window 9:72129397-72129398
2012-10-07 17:52:00,598 - DEBUG - Taking top 8 variants by coverage in window 9:72129413-72129414
2012-10-07 17:52:00,688 - DEBUG - Taking top 8 variants by coverage in window 9:72131782-72131787
2012-10-07 17:52:01,095 - DEBUG - Taking top 8 variants by coverage in window 9:72139464-72139465
2012-10-07 17:52:01,156 - DEBUG - Taking top 8 variants by coverage in window 9:72140070-72140071
2012-10-07 17:52:02,485 - DEBUG - Taking top 8 variants by coverage in window 9:72193997-72193998
2012-10-07 17:52:02,524 - DEBUG - Taking top 8 variants by coverage in window 9:72194043-72194044
2012-10-07 17:52:02,539 - DEBUG - Taking top 8 variants by coverage in window 9:72194100-72194101
2012-10-07 17:52:02,630 - DEBUG - Taking top 8 variants by coverage in window 9:72199753-72199754
2012-10-07 17:52:02,811 - DEBUG - Taking top 8 variants by coverage in window 9:72205180-72205181
2012-10-07 17:52:02,824 - DEBUG - Taking top 8 variants by coverage in window 9:72205202-72205203
2012-10-07 17:52:02,903 - DEBUG - Taking top 8 variants by coverage in window 9:72209961-72209962
2012-10-07 17:52:02,944 - DEBUG - Taking top 8 variants by coverage in window 9:72209985-72209986
2012-10-07 17:52:03,107 - DEBUG - Taking top 8 variants by coverage in window 9:72213969-72213970
2012-10-07 17:52:03,482 - DEBUG - Taking top 8 variants by coverage in window 9:72220818-72220819
2012-10-07 17:52:03,535 - DEBUG - Taking top 8 variants by coverage in window 9:72220911-72220913
2012-10-07 17:52:03,597 - DEBUG - Taking top 8 variants by coverage in window 9:72221012-72221016
2012-10-07 17:52:03,986 - DEBUG - Taking top 8 variants by coverage in window 9:72225366-72225367
2012-10-07 17:52:04,235 - DEBUG - Taking top 8 variants by coverage in window 9:72229365-72229366
2012-10-07 17:52:04,272 - DEBUG - Taking top 8 variants by coverage in window 9:72229381-72229382
2012-10-07 17:52:05,061 - DEBUG - Taking top 8 variants by coverage in window 9:72244897-72244898
2012-10-07 17:52:05,325 - DEBUG - Taking top 8 variants by coverage in window 9:72248991-72248992
2012-10-07 17:52:05,788 - DEBUG - Taking top 8 variants by coverage in window 9:72255083-72255084
2012-10-07 17:52:07,139 - DEBUG - Taking top 8 variants by coverage in window 9:72279652-72279654
2012-10-07 17:52:07,521 - DEBUG - Taking top 8 variants by coverage in window 9:72289110-72289112
2012-10-07 17:52:07,555 - DEBUG - Taking top 8 variants by coverage in window 9:72289354-72289355
2012-10-07 17:52:07,591 - DEBUG - Taking top 8 variants by coverage in window 9:72290056-72290057
2012-10-07 17:52:07,865 - DEBUG - Taking top 8 variants by coverage in window 9:72293844-72293845
2012-10-07 17:52:08,142 - DEBUG - Taking top 8 variants by coverage in window 9:72299875-72299876
2012-10-07 17:52:08,362 - DEBUG - Taking top 8 variants by coverage in window 9:72304949-72304950
2012-10-07 17:52:08,478 - DEBUG - Taking top 8 variants by coverage in window 9:72306478-72306479
2012-10-07 17:52:08,944 - DEBUG - Taking top 8 variants by coverage in window 9:72316158-72316159
2012-10-07 17:52:09,420 - DEBUG - Taking top 8 variants by coverage in window 9:72324279-72324280
2012-10-07 17:52:09,789 - DEBUG - Taking top 8 variants by coverage in window 9:72336851-72336853
2012-10-07 17:52:09,994 - DEBUG - Taking top 8 variants by coverage in window 9:72339161-72339162
2012-10-07 17:52:10,182 - DEBUG - Taking top 8 variants by coverage in window 9:72346664-72346665
2012-10-07 17:52:10,439 - DEBUG - Taking top 8 variants by coverage in window 9:72354049-72354050
2012-10-07 17:52:10,917 - DEBUG - Taking top 8 variants by coverage in window 9:72367363-72367365
2012-10-07 17:52:11,133 - DEBUG - Taking top 8 variants by coverage in window 9:72367388-72367404
2012-10-07 17:52:11,694 - DEBUG - Taking top 8 variants by coverage in window 9:72384684-72384685
2012-10-07 17:52:12,028 - DEBUG - Taking top 8 variants by coverage in window 9:72401034-72401035
2012-10-07 17:52:12,039 - DEBUG - Taking top 8 variants by coverage in window 9:72401042-72401043
2012-10-07 17:52:12,209 - DEBUG - Taking top 8 variants by coverage in window 9:72405350-72405351
2012-10-07 17:52:12,229 - DEBUG - Taking top 8 variants by coverage in window 9:72405536-72405548
2012-10-07 17:52:13,002 - DEBUG - Taking top 8 variants by coverage in window 9:72432329-72432330
2012-10-07 17:52:13,748 - DEBUG - Taking top 8 variants by coverage in window 9:72450161-72450162
2012-10-07 17:52:13,914 - DEBUG - Taking top 8 variants by coverage in window 9:72452309-72452310
2012-10-07 17:52:14,144 - DEBUG - Taking top 8 variants by coverage in window 9:72458726-72458727
2012-10-07 17:52:14,721 - DEBUG - Taking top 8 variants by coverage in window 9:72474353-72474354
2012-10-07 17:52:14,936 - DEBUG - Taking top 8 variants by coverage in window 9:72478453-72478458
2012-10-07 17:52:15,007 - DEBUG - Taking top 8 variants by coverage in window 9:72479398-72479399
2012-10-07 17:52:15,030 - DEBUG - Taking top 8 variants by coverage in window 9:72480043-72480044
2012-10-07 17:52:15,660 - DEBUG - Taking top 8 variants by coverage in window 9:72491854-72491855
2012-10-07 17:52:15,705 - DEBUG - Taking top 8 variants by coverage in window 9:72491884-72491885
2012-10-07 17:52:16,252 - DEBUG - Taking top 8 variants by coverage in window 9:72499663-72499664
2012-10-07 17:52:16,287 - DEBUG - Taking top 8 variants by coverage in window 9:72499666-72499667
2012-10-07 17:52:16,345 - DEBUG - Taking top 8 variants by coverage in window 9:72499672-72499674
2012-10-07 17:52:16,422 - DEBUG - Taking top 8 variants by coverage in window 9:72499675-72499676
2012-10-07 17:52:16,759 - DEBUG - Taking top 8 variants by coverage in window 9:72503317-72503318
2012-10-07 17:52:16,825 - DEBUG - Taking top 8 variants by coverage in window 9:72503341-72503342
2012-10-07 17:52:17,074 - DEBUG - Taking top 8 variants by coverage in window 9:72506849-72506852
2012-10-07 17:52:17,423 - DEBUG - Taking top 8 variants by coverage in window 9:72516480-72516482
2012-10-07 17:52:17,456 - DEBUG - Taking top 8 variants by coverage in window 9:72516673-72516674
2012-10-07 17:52:17,672 - DEBUG - Taking top 8 variants by coverage in window 9:72526486-72526487
2012-10-07 17:52:17,700 - DEBUG - Taking top 8 variants by coverage in window 9:72526508-72526509
2012-10-07 17:52:18,063 - DEBUG - Taking top 8 variants by coverage in window 9:72534320-72534327
2012-10-07 17:52:18,191 - DEBUG - Taking top 8 variants by coverage in window 9:72536089-72536090
2012-10-07 17:52:18,230 - DEBUG - Taking top 8 variants by coverage in window 9:72536145-72536149
2012-10-07 17:52:18,418 - DEBUG - Taking top 8 variants by coverage in window 9:72538240-72538241
2012-10-07 17:52:18,432 - DEBUG - Taking top 8 variants by coverage in window 9:72538278-72538279
2012-10-07 17:52:19,242 - DEBUG - Taking top 8 variants by coverage in window 9:72560858-72560859
2012-10-07 17:52:19,249 - DEBUG - Taking top 8 variants by coverage in window 9:72560860-72560861
2012-10-07 17:52:19,433 - DEBUG - Taking top 8 variants by coverage in window 9:72564141-72564142
2012-10-07 17:52:19,921 - DEBUG - Taking top 8 variants by coverage in window 9:72574451-72574454
2012-10-07 17:52:21,368 - DEBUG - Taking top 8 variants by coverage in window 9:72574525-72574526
2012-10-07 17:52:21,446 - DEBUG - Taking top 8 variants by coverage in window 9:72574554-72574555
2012-10-07 17:52:21,503 - DEBUG - Taking top 8 variants by coverage in window 9:72576370-72576371
2012-10-07 17:52:21,588 - DEBUG - Taking top 8 variants by coverage in window 9:72577351-72577352
2012-10-07 17:52:21,635 - DEBUG - Taking top 8 variants by coverage in window 9:72578420-72578421
2012-10-07 17:52:21,675 - DEBUG - Taking top 8 variants by coverage in window 9:72580500-72580501
2012-10-07 17:52:21,787 - DEBUG - Taking top 8 variants by coverage in window 9:72580541-72580542
2012-10-07 17:52:22,265 - DEBUG - Taking top 8 variants by coverage in window 9:72590574-72590576
2012-10-07 17:52:22,347 - DEBUG - Taking top 8 variants by coverage in window 9:72590623-72590624
2012-10-07 17:52:22,383 - DEBUG - Taking top 8 variants by coverage in window 9:72590814-72590815
2012-10-07 17:52:22,944 - DEBUG - Taking top 8 variants by coverage in window 9:72600273-72600274
2012-10-07 17:52:23,007 - DEBUG - Taking top 8 variants by coverage in window 9:72600455-72600456
2012-10-07 17:52:23,076 - DEBUG - Taking top 8 variants by coverage in window 9:72600919-72600920
2012-10-07 17:52:23,144 - DEBUG - Taking top 8 variants by coverage in window 9:72601300-72601301
2012-10-07 17:52:23,210 - DEBUG - Taking top 8 variants by coverage in window 9:72602393-72602402
2012-10-07 17:52:23,263 - DEBUG - Taking top 8 variants by coverage in window 9:72603007-72603008
2012-10-07 17:52:23,413 - DEBUG - Taking top 8 variants by coverage in window 9:72603867-72603868
2012-10-07 17:52:23,449 - DEBUG - Taking top 8 variants by coverage in window 9:72603872-72603873
2012-10-07 17:52:23,901 - DEBUG - Taking top 8 variants by coverage in window 9:72613194-72613195
2012-10-07 17:52:23,931 - DEBUG - Taking top 8 variants by coverage in window 9:72613433-72613434
2012-10-07 17:52:24,873 - DEBUG - Taking top 8 variants by coverage in window 9:72624951-72624952
2012-10-07 17:52:24,978 - DEBUG - Taking top 8 variants by coverage in window 9:72626794-72626795
2012-10-07 17:52:25,017 - DEBUG - Taking top 8 variants by coverage in window 9:72627239-72627242
2012-10-07 17:52:25,040 - DEBUG - Taking top 8 variants by coverage in window 9:72627446-72627448
2012-10-07 17:52:25,858 - DEBUG - Taking top 8 variants by coverage in window 9:72637780-72637781
2012-10-07 17:52:26,190 - DEBUG - Taking top 8 variants by coverage in window 9:72645151-72645156
2012-10-07 17:52:26,398 - DEBUG - Taking top 8 variants by coverage in window 9:72649498-72649500
2012-10-07 17:52:26,449 - DEBUG - Taking top 8 variants by coverage in window 9:72650050-72650066
2012-10-07 17:52:26,456 - DEBUG - Taking top 8 variants by coverage in window 9:72650067-72650068
2012-10-07 17:52:27,009 - DEBUG - Taking top 8 variants by coverage in window 9:72662372-72662376
2012-10-07 17:52:27,179 - DEBUG - Taking top 8 variants by coverage in window 9:72664268-72664269
2012-10-07 17:52:28,379 - DEBUG - Taking top 8 variants by coverage in window 9:72677248-72677266
2012-10-07 17:52:28,527 - DEBUG - Taking top 8 variants by coverage in window 9:72680486-72680491
2012-10-07 17:52:28,741 - DEBUG - Taking top 8 variants by coverage in window 9:72683933-72683934
2012-10-07 17:52:28,785 - DEBUG - Taking top 8 variants by coverage in window 9:72684019-72684020
2012-10-07 17:52:29,059 - DEBUG - Taking top 8 variants by coverage in window 9:72688274-72688275
2012-10-07 17:52:29,126 - DEBUG - Taking top 8 variants by coverage in window 9:72689991-72689992
2012-10-07 17:52:29,448 - DEBUG - Taking top 8 variants by coverage in window 9:72695257-72695259
2012-10-07 17:52:29,488 - DEBUG - Taking top 8 variants by coverage in window 9:72695421-72695422
2012-10-07 17:52:30,125 - DEBUG - Taking top 8 variants by coverage in window 9:72703813-72703814
2012-10-07 17:52:30,276 - DEBUG - Taking top 8 variants by coverage in window 9:72706267-72706268
2012-10-07 17:52:30,390 - DEBUG - Taking top 8 variants by coverage in window 9:72709097-72709098
2012-10-07 17:52:30,533 - DEBUG - Taking top 8 variants by coverage in window 9:72710487-72710488
2012-10-07 17:52:31,215 - DEBUG - Taking top 8 variants by coverage in window 9:72722585-72722586
2012-10-07 17:52:31,397 - DEBUG - Taking top 8 variants by coverage in window 9:72724973-72724974
2012-10-07 17:52:31,409 - DEBUG - Taking top 8 variants by coverage in window 9:72724996-72724998
2012-10-07 17:52:31,491 - DEBUG - Taking top 8 variants by coverage in window 9:72725472-72725473
2012-10-07 17:52:31,517 - DEBUG - Taking top 8 variants by coverage in window 9:72725510-72725511
2012-10-07 17:52:31,921 - DEBUG - Taking top 8 variants by coverage in window 9:72731542-72731543
2012-10-07 17:52:32,199 - DEBUG - Taking top 8 variants by coverage in window 9:72734583-72734584
2012-10-07 17:52:32,273 - DEBUG - Taking top 8 variants by coverage in window 9:72735461-72735467
2012-10-07 17:52:32,744 - DEBUG - Taking top 8 variants by coverage in window 9:72742187-72742188
2012-10-07 17:52:32,771 - DEBUG - Taking top 8 variants by coverage in window 9:72742202-72742205
2012-10-07 17:52:32,959 - DEBUG - Taking top 8 variants by coverage in window 9:72749271-72749272
2012-10-07 17:52:33,082 - DEBUG - Taking top 8 variants by coverage in window 9:72752038-72752039
2012-10-07 17:52:33,231 - DEBUG - Taking top 8 variants by coverage in window 9:72754428-72754440
2012-10-07 17:52:33,288 - DEBUG - Taking top 8 variants by coverage in window 9:72755424-72755425
2012-10-07 17:52:33,303 - DEBUG - Taking top 8 variants by coverage in window 9:72755440-72755441
2012-10-07 17:52:33,351 - DEBUG - Taking top 8 variants by coverage in window 9:72756038-72756039
2012-10-07 17:52:33,969 - DEBUG - Taking top 8 variants by coverage in window 9:72775096-72775097
2012-10-07 17:52:34,241 - DEBUG - Taking top 8 variants by coverage in window 9:72780779-72780780
2012-10-07 17:52:34,677 - DEBUG - Taking top 8 variants by coverage in window 9:72785781-72785782
2012-10-07 17:52:34,794 - DEBUG - Taking top 8 variants by coverage in window 9:72788761-72788762
2012-10-07 17:52:36,142 - DEBUG - Taking top 8 variants by coverage in window 9:72807699-72807704
2012-10-07 17:52:36,168 - DEBUG - Taking top 8 variants by coverage in window 9:72807713-72807719
2012-10-07 17:52:36,227 - DEBUG - Taking top 8 variants by coverage in window 9:72807887-72807888
2012-10-07 17:52:36,646 - DEBUG - Taking top 8 variants by coverage in window 9:72813674-72813675
2012-10-07 17:52:37,169 - DEBUG - Taking top 8 variants by coverage in window 9:72819161-72819162
2012-10-07 17:52:37,462 - DEBUG - Taking top 8 variants by coverage in window 9:72823621-72823625
2012-10-07 17:52:38,068 - DEBUG - Taking top 8 variants by coverage in window 9:72831237-72831243
2012-10-07 17:52:38,810 - DEBUG - Taking top 8 variants by coverage in window 9:72832115-72832116
2012-10-07 17:52:38,945 - DEBUG - Taking top 8 variants by coverage in window 9:72833803-72833804
2012-10-07 17:52:40,474 - DEBUG - Taking top 8 variants by coverage in window 9:72854372-72854373
2012-10-07 17:52:41,438 - DEBUG - Taking top 8 variants by coverage in window 9:72869713-72869714
2012-10-07 17:52:41,448 - DEBUG - Taking top 8 variants by coverage in window 9:72869739-72869740
2012-10-07 17:52:41,606 - DEBUG - Taking top 8 variants by coverage in window 9:72872160-72872163
2012-10-07 17:52:41,773 - DEBUG - Taking top 8 variants by coverage in window 9:72873807-72873808
2012-10-07 17:52:42,894 - DEBUG - Taking top 8 variants by coverage in window 9:72881196-72881197
2012-10-07 17:52:43,494 - DEBUG - Taking top 8 variants by coverage in window 9:72886621-72886624
2012-10-07 17:52:43,677 - DEBUG - Taking top 8 variants by coverage in window 9:72886638-72886641
2012-10-07 17:52:43,718 - DEBUG - Taking top 8 variants by coverage in window 9:72886682-72886683
2012-10-07 17:52:43,805 - DEBUG - Taking top 8 variants by coverage in window 9:72886846-72886847
2012-10-07 17:52:43,958 - DEBUG - Taking top 8 variants by coverage in window 9:72888214-72888216
2012-10-07 17:52:44,624 - DEBUG - Taking top 8 variants by coverage in window 9:72894921-72894922
2012-10-07 17:52:44,807 - DEBUG - Taking top 8 variants by coverage in window 9:72896212-72896213
2012-10-07 17:52:45,109 - DEBUG - Taking top 8 variants by coverage in window 9:72898399-72898400
2012-10-07 17:52:45,282 - DEBUG - Taking top 8 variants by coverage in window 9:72899753-72899754
2012-10-07 17:52:45,597 - DEBUG - Taking top 8 variants by coverage in window 9:72901221-72901223
2012-10-07 17:52:45,613 - DEBUG - Taking top 8 variants by coverage in window 9:72901249-72901250
2012-10-07 17:52:46,869 - DEBUG - Taking top 8 variants by coverage in window 9:72911093-72911102
2012-10-07 17:52:47,168 - DEBUG - Taking top 8 variants by coverage in window 9:72913211-72913235
2012-10-07 17:52:47,606 - DEBUG - Taking top 8 variants by coverage in window 9:72918290-72918311
2012-10-07 17:52:47,622 - DEBUG - Taking top 8 variants by coverage in window 9:72918319-72918320
2012-10-07 17:52:48,145 - DEBUG - Taking top 8 variants by coverage in window 9:72922968-72922969
2012-10-07 17:52:48,423 - DEBUG - Taking top 8 variants by coverage in window 9:72924856-72924862
2012-10-07 17:52:48,457 - DEBUG - Taking top 8 variants by coverage in window 9:72925006-72925007
2012-10-07 17:52:48,729 - DEBUG - Taking top 8 variants by coverage in window 9:72927112-72927114
2012-10-07 17:52:49,098 - DEBUG - Taking top 8 variants by coverage in window 9:72930760-72930780
2012-10-07 17:52:49,425 - DEBUG - Taking top 8 variants by coverage in window 9:72932695-72932702
2012-10-07 17:52:49,828 - DEBUG - Taking top 8 variants by coverage in window 9:72936635-72936636
2012-10-07 17:52:50,339 - DEBUG - Taking top 8 variants by coverage in window 9:72941805-72941806
2012-10-07 17:52:51,509 - DEBUG - Taking top 8 variants by coverage in window 9:72956839-72956840
2012-10-07 17:52:51,528 - DEBUG - Taking top 8 variants by coverage in window 9:72957823-72957824
2012-10-07 17:52:51,596 - DEBUG - Taking top 8 variants by coverage in window 9:72958568-72958570
2012-10-07 17:52:52,399 - DEBUG - Taking top 8 variants by coverage in window 9:72964750-72964754
2012-10-07 17:52:52,406 - DEBUG - Taking top 8 variants by coverage in window 9:72964916-72964932
2012-10-07 17:52:52,419 - DEBUG - Taking top 8 variants by coverage in window 9:72964934-72964935
2012-10-07 17:52:52,450 - DEBUG - Taking top 8 variants by coverage in window 9:72965128-72965129
2012-10-07 17:52:52,499 - DEBUG - Taking top 8 variants by coverage in window 9:72965306-72965307
2012-10-07 17:52:52,798 - DEBUG - Taking top 8 variants by coverage in window 9:72968142-72968143
2012-10-07 17:52:53,839 - DEBUG - Taking top 8 variants by coverage in window 9:72979837-72979838
2012-10-07 17:52:53,882 - DEBUG - Taking top 8 variants by coverage in window 9:72979864-72979865
2012-10-07 17:52:54,024 - DEBUG - Taking top 8 variants by coverage in window 9:72979986-72979988
2012-10-07 17:52:54,679 - DEBUG - Taking top 8 variants by coverage in window 9:72986657-72986658
2012-10-07 17:52:55,027 - DEBUG - Taking top 8 variants by coverage in window 9:72989840-72989848
2012-10-07 17:52:55,249 - DEBUG - Taking top 8 variants by coverage in window 9:72991943-72991944
2012-10-07 17:52:57,276 - DEBUG - Read 86043 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 17:52:57,507 - DEBUG - Read 93890 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 17:52:57,759 - DEBUG - Read 110065 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 17:52:58,037 - DEBUG - Read 109444 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 17:52:58,308 - DEBUG - Read 105694 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 17:52:58,549 - DEBUG - Read 99544 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 17:52:58,800 - DEBUG - Read 106637 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 17:52:59,039 - DEBUG - Read 93512 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 17:52:59,267 - DEBUG - Read 91326 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 17:52:59,504 - DEBUG - Read 93334 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 17:52:59,753 - DEBUG - Read 100788 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 17:52:59,973 - DEBUG - Read 90247 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 17:53:00,205 - DEBUG - Read 92012 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 17:53:00,439 - DEBUG - Read 101489 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 17:53:00,698 - DEBUG - Read 109395 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 17:53:00,917 - DEBUG - Read 85023 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 17:53:01,160 - DEBUG - Read 105936 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 17:53:01,410 - DEBUG - Read 102304 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 17:53:01,618 - DEBUG - Read 85351 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 17:53:01,845 - DEBUG - Read 87291 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 17:53:01,949 - DEBUG - Detected 22998 variants in 86043 reads
2012-10-07 17:53:02,130 - DEBUG - Detected 31321 variants in 93890 reads
2012-10-07 17:53:02,341 - DEBUG - Detected 42371 variants in 110065 reads
2012-10-07 17:53:02,600 - DEBUG - Detected 51487 variants in 109444 reads
2012-10-07 17:53:02,889 - DEBUG - Detected 57469 variants in 105694 reads
2012-10-07 17:53:03,206 - DEBUG - Detected 63718 variants in 99544 reads
2012-10-07 17:53:03,566 - DEBUG - Detected 76611 variants in 106637 reads
2012-10-07 17:53:03,970 - DEBUG - Detected 81543 variants in 93512 reads
2012-10-07 17:53:04,427 - DEBUG - Detected 86882 variants in 91326 reads
2012-10-07 17:53:04,882 - DEBUG - Detected 91638 variants in 93334 reads
2012-10-07 17:53:05,365 - DEBUG - Detected 96249 variants in 100788 reads
2012-10-07 17:53:05,854 - DEBUG - Detected 99943 variants in 90247 reads
2012-10-07 17:53:06,365 - DEBUG - Detected 103812 variants in 92012 reads
2012-10-07 17:53:06,904 - DEBUG - Detected 108051 variants in 101489 reads
2012-10-07 17:53:07,526 - DEBUG - Detected 114918 variants in 109395 reads
2012-10-07 17:53:08,097 - DEBUG - Detected 118529 variants in 85023 reads
2012-10-07 17:53:08,703 - DEBUG - Detected 123465 variants in 105936 reads
2012-10-07 17:53:09,336 - DEBUG - Detected 127434 variants in 102304 reads
2012-10-07 17:53:09,962 - DEBUG - Detected 131198 variants in 85351 reads
2012-10-07 17:53:10,665 - DEBUG - Detected 135194 variants in 87291 reads
2012-10-07 17:53:11,800 - DEBUG - Taking top 8 variants by coverage in window 9:73001521-73001527
2012-10-07 17:53:12,087 - DEBUG - Taking top 8 variants by coverage in window 9:73002365-73002370
2012-10-07 17:53:12,207 - DEBUG - Taking top 8 variants by coverage in window 9:73002907-73002919
2012-10-07 17:53:12,234 - DEBUG - Taking top 8 variants by coverage in window 9:73002927-73002928
2012-10-07 17:53:12,930 - DEBUG - Taking top 8 variants by coverage in window 9:73007331-73007332
2012-10-07 17:53:14,831 - DEBUG - Taking top 8 variants by coverage in window 9:73023757-73023758
2012-10-07 17:53:15,109 - DEBUG - Taking top 8 variants by coverage in window 9:73025708-73025709
2012-10-07 17:53:15,124 - DEBUG - Taking top 8 variants by coverage in window 9:73025714-73025715
2012-10-07 17:53:15,135 - DEBUG - Taking top 8 variants by coverage in window 9:73025820-73025821
2012-10-07 17:53:15,142 - DEBUG - Taking top 8 variants by coverage in window 9:73025822-73025825
2012-10-07 17:53:15,224 - DEBUG - Taking top 8 variants by coverage in window 9:73027294-73027296
2012-10-07 17:53:15,578 - DEBUG - Taking top 8 variants by coverage in window 9:73031613-73031615
2012-10-07 17:53:16,903 - DEBUG - Taking top 8 variants by coverage in window 9:73045802-73045803
2012-10-07 17:53:16,964 - DEBUG - Taking top 8 variants by coverage in window 9:73046629-73046630
2012-10-07 17:53:17,272 - DEBUG - Taking top 8 variants by coverage in window 9:73050393-73050399
2012-10-07 17:53:17,326 - DEBUG - Taking top 8 variants by coverage in window 9:73050467-73050468
2012-10-07 17:53:17,763 - DEBUG - Taking top 8 variants by coverage in window 9:73060427-73060435
2012-10-07 17:53:17,846 - DEBUG - Taking top 8 variants by coverage in window 9:73060445-73060446
2012-10-07 17:53:18,127 - DEBUG - Taking top 8 variants by coverage in window 9:73063625-73063626
2012-10-07 17:53:19,307 - DEBUG - Taking top 8 variants by coverage in window 9:73076812-73076817
2012-10-07 17:53:19,328 - DEBUG - Taking top 8 variants by coverage in window 9:73076819-73076820
2012-10-07 17:53:20,054 - DEBUG - Taking top 8 variants by coverage in window 9:73089468-73089478
2012-10-07 17:53:20,304 - DEBUG - Taking top 8 variants by coverage in window 9:73092606-73092607
2012-10-07 17:53:20,441 - DEBUG - Taking top 8 variants by coverage in window 9:73093709-73093716
2012-10-07 17:53:20,738 - DEBUG - Taking top 8 variants by coverage in window 9:73097687-73097688
2012-10-07 17:53:20,903 - DEBUG - Taking top 8 variants by coverage in window 9:73097762-73097767
2012-10-07 17:53:21,297 - DEBUG - Taking top 8 variants by coverage in window 9:73105666-73105667
2012-10-07 17:53:21,371 - DEBUG - Taking top 8 variants by coverage in window 9:73105783-73105784
2012-10-07 17:53:21,383 - DEBUG - Taking top 8 variants by coverage in window 9:73105786-73105787
2012-10-07 17:53:21,985 - DEBUG - Taking top 8 variants by coverage in window 9:73115686-73115687
2012-10-07 17:53:21,996 - DEBUG - Taking top 8 variants by coverage in window 9:73115693-73115694
2012-10-07 17:53:22,661 - DEBUG - Taking top 8 variants by coverage in window 9:73123232-73123233
2012-10-07 17:53:22,797 - DEBUG - Taking top 8 variants by coverage in window 9:73124837-73124839
2012-10-07 17:53:24,005 - DEBUG - Taking top 8 variants by coverage in window 9:73142010-73142011
2012-10-07 17:53:24,020 - DEBUG - Taking top 8 variants by coverage in window 9:73142012-73142013
2012-10-07 17:53:24,108 - DEBUG - Taking top 8 variants by coverage in window 9:73142432-73142433
2012-10-07 17:53:24,336 - DEBUG - Taking top 8 variants by coverage in window 9:73144130-73144132
2012-10-07 17:53:24,541 - DEBUG - Taking top 8 variants by coverage in window 9:73149425-73149426
2012-10-07 17:53:24,573 - DEBUG - Taking top 8 variants by coverage in window 9:73149547-73149564
2012-10-07 17:53:24,582 - DEBUG - Taking top 8 variants by coverage in window 9:73149566-73149568
2012-10-07 17:53:24,621 - DEBUG - Taking top 8 variants by coverage in window 9:73149572-73149573
2012-10-07 17:53:24,850 - DEBUG - Taking top 8 variants by coverage in window 9:73151999-73152001
2012-10-07 17:53:24,894 - DEBUG - Taking top 8 variants by coverage in window 9:73152182-73152185
2012-10-07 17:53:24,990 - DEBUG - Taking top 8 variants by coverage in window 9:73152596-73152597
2012-10-07 17:53:25,488 - DEBUG - Taking top 8 variants by coverage in window 9:73159372-73159373
2012-10-07 17:53:25,681 - DEBUG - Taking top 8 variants by coverage in window 9:73161930-73161931
2012-10-07 17:53:26,169 - DEBUG - Taking top 8 variants by coverage in window 9:73170240-73170248
2012-10-07 17:53:26,741 - DEBUG - Taking top 8 variants by coverage in window 9:73180847-73180848
2012-10-07 17:53:26,785 - DEBUG - Taking top 8 variants by coverage in window 9:73181059-73181064
2012-10-07 17:53:27,086 - DEBUG - Taking top 8 variants by coverage in window 9:73183866-73183867
2012-10-07 17:53:27,220 - DEBUG - Taking top 8 variants by coverage in window 9:73184640-73184641
2012-10-07 17:53:29,400 - DEBUG - Taking top 8 variants by coverage in window 9:73206836-73206839
2012-10-07 17:53:29,687 - DEBUG - Taking top 8 variants by coverage in window 9:73209229-73209233
2012-10-07 17:53:29,967 - DEBUG - Taking top 8 variants by coverage in window 9:73211617-73211618
2012-10-07 17:53:30,209 - DEBUG - Taking top 8 variants by coverage in window 9:73214840-73214849
2012-10-07 17:53:30,727 - DEBUG - Taking top 8 variants by coverage in window 9:73220359-73220362
2012-10-07 17:53:30,801 - DEBUG - Taking top 8 variants by coverage in window 9:73220394-73220398
2012-10-07 17:53:31,275 - DEBUG - Taking top 8 variants by coverage in window 9:73228868-73228888
2012-10-07 17:53:31,896 - DEBUG - Taking top 8 variants by coverage in window 9:73237238-73237239
2012-10-07 17:53:31,910 - DEBUG - Taking top 8 variants by coverage in window 9:73237261-73237262
2012-10-07 17:53:32,508 - DEBUG - Taking top 8 variants by coverage in window 9:73244520-73244521
2012-10-07 17:53:33,306 - DEBUG - Taking top 8 variants by coverage in window 9:73270977-73270978
2012-10-07 17:53:34,569 - DEBUG - Taking top 8 variants by coverage in window 9:73293258-73293259
2012-10-07 17:53:34,753 - DEBUG - Taking top 8 variants by coverage in window 9:73294384-73294385
2012-10-07 17:53:35,810 - DEBUG - Taking top 8 variants by coverage in window 9:73311284-73311285
2012-10-07 17:53:36,048 - DEBUG - Taking top 8 variants by coverage in window 9:73313575-73313576
2012-10-07 17:53:36,172 - DEBUG - Taking top 8 variants by coverage in window 9:73314314-73314317
2012-10-07 17:53:36,201 - DEBUG - Taking top 8 variants by coverage in window 9:73314318-73314324
2012-10-07 17:53:36,737 - DEBUG - Taking top 8 variants by coverage in window 9:73318194-73318195
2012-10-07 17:53:36,860 - DEBUG - Taking top 8 variants by coverage in window 9:73319074-73319089
2012-10-07 17:53:37,305 - DEBUG - Taking top 8 variants by coverage in window 9:73331902-73331903
2012-10-07 17:53:38,050 - DEBUG - Taking top 8 variants by coverage in window 9:73339619-73339621
2012-10-07 17:53:38,056 - DEBUG - Taking top 8 variants by coverage in window 9:73339622-73339624
2012-10-07 17:53:38,792 - DEBUG - Taking top 8 variants by coverage in window 9:73354999-73355004
2012-10-07 17:53:38,822 - DEBUG - Taking top 8 variants by coverage in window 9:73355059-73355060
2012-10-07 17:53:39,652 - DEBUG - Taking top 8 variants by coverage in window 9:73367397-73367398
2012-10-07 17:53:40,045 - DEBUG - Taking top 8 variants by coverage in window 9:73373118-73373120
2012-10-07 17:53:40,429 - DEBUG - Taking top 8 variants by coverage in window 9:73379743-73379750
2012-10-07 17:53:40,699 - DEBUG - Taking top 8 variants by coverage in window 9:73382829-73382830
2012-10-07 17:53:40,729 - DEBUG - Taking top 8 variants by coverage in window 9:73383180-73383187
2012-10-07 17:53:40,748 - DEBUG - Taking top 8 variants by coverage in window 9:73383196-73383197
2012-10-07 17:53:41,437 - DEBUG - Taking top 8 variants by coverage in window 9:73393544-73393545
2012-10-07 17:53:41,648 - DEBUG - Taking top 8 variants by coverage in window 9:73394980-73394981
2012-10-07 17:53:42,769 - DEBUG - Taking top 8 variants by coverage in window 9:73409441-73409442
2012-10-07 17:53:44,004 - DEBUG - Taking top 8 variants by coverage in window 9:73415979-73415982
2012-10-07 17:53:44,834 - DEBUG - Taking top 8 variants by coverage in window 9:73417409-73417410
2012-10-07 17:53:44,890 - DEBUG - Taking top 8 variants by coverage in window 9:73417459-73417460
2012-10-07 17:53:45,410 - DEBUG - Taking top 8 variants by coverage in window 9:73426662-73426665
2012-10-07 17:53:45,526 - DEBUG - Taking top 8 variants by coverage in window 9:73428276-73428277
2012-10-07 17:53:45,562 - DEBUG - Taking top 8 variants by coverage in window 9:73428295-73428296
2012-10-07 17:53:45,784 - DEBUG - Taking top 8 variants by coverage in window 9:73433674-73433675
2012-10-07 17:53:45,851 - DEBUG - Taking top 8 variants by coverage in window 9:73434566-73434571
2012-10-07 17:53:46,021 - DEBUG - Taking top 8 variants by coverage in window 9:73436805-73436806
2012-10-07 17:53:46,160 - DEBUG - Taking top 8 variants by coverage in window 9:73438221-73438225
2012-10-07 17:53:46,456 - DEBUG - Taking top 8 variants by coverage in window 9:73440110-73440111
2012-10-07 17:53:46,465 - DEBUG - Taking top 8 variants by coverage in window 9:73440124-73440125
2012-10-07 17:53:46,502 - DEBUG - Taking top 8 variants by coverage in window 9:73440358-73440359
2012-10-07 17:53:46,549 - DEBUG - Taking top 8 variants by coverage in window 9:73440765-73440766
2012-10-07 17:53:46,606 - DEBUG - Taking top 8 variants by coverage in window 9:73441358-73441361
2012-10-07 17:53:46,896 - DEBUG - Taking top 8 variants by coverage in window 9:73444921-73444923
2012-10-07 17:53:47,366 - DEBUG - Taking top 8 variants by coverage in window 9:73455899-73455900
2012-10-07 17:53:49,300 - DEBUG - Taking top 8 variants by coverage in window 9:73477438-73477453
2012-10-07 17:53:49,429 - DEBUG - Taking top 8 variants by coverage in window 9:73478643-73478645
2012-10-07 17:53:49,744 - DEBUG - Taking top 8 variants by coverage in window 9:73482062-73482063
2012-10-07 17:53:49,756 - DEBUG - Taking top 8 variants by coverage in window 9:73482063-73482064
2012-10-07 17:53:50,301 - DEBUG - Taking top 8 variants by coverage in window 9:73485700-73485701
2012-10-07 17:53:50,711 - DEBUG - Taking top 8 variants by coverage in window 9:73490346-73490349
2012-10-07 17:53:51,371 - DEBUG - Taking top 8 variants by coverage in window 9:73497705-73497707
2012-10-07 17:53:51,530 - DEBUG - Taking top 8 variants by coverage in window 9:73500027-73500033
2012-10-07 17:53:52,049 - DEBUG - Taking top 8 variants by coverage in window 9:73504913-73504915
2012-10-07 17:53:52,360 - DEBUG - Taking top 8 variants by coverage in window 9:73507572-73507573
2012-10-07 17:53:53,560 - DEBUG - Taking top 8 variants by coverage in window 9:73533815-73533816
2012-10-07 17:53:53,566 - DEBUG - Taking top 8 variants by coverage in window 9:73533816-73533818
2012-10-07 17:53:53,600 - DEBUG - Taking top 8 variants by coverage in window 9:73533843-73533844
2012-10-07 17:53:53,663 - DEBUG - Taking top 8 variants by coverage in window 9:73533871-73533873
2012-10-07 17:53:54,027 - DEBUG - Taking top 8 variants by coverage in window 9:73540125-73540127
2012-10-07 17:53:54,732 - DEBUG - Taking top 8 variants by coverage in window 9:73549418-73549434
2012-10-07 17:53:55,660 - DEBUG - Taking top 8 variants by coverage in window 9:73559775-73559776
2012-10-07 17:53:55,755 - DEBUG - Taking top 8 variants by coverage in window 9:73560684-73560685
2012-10-07 17:53:55,765 - DEBUG - Taking top 8 variants by coverage in window 9:73560685-73560686
2012-10-07 17:53:56,291 - DEBUG - Taking top 8 variants by coverage in window 9:73565597-73565601
2012-10-07 17:53:56,734 - DEBUG - Taking top 8 variants by coverage in window 9:73570351-73570360
2012-10-07 17:53:57,207 - DEBUG - Taking top 8 variants by coverage in window 9:73575151-73575152
2012-10-07 17:53:57,845 - DEBUG - Taking top 8 variants by coverage in window 9:73590449-73590450
2012-10-07 17:53:57,958 - DEBUG - Taking top 8 variants by coverage in window 9:73593435-73593436
2012-10-07 17:53:58,235 - DEBUG - Taking top 8 variants by coverage in window 9:73596979-73596980
2012-10-07 17:53:58,649 - DEBUG - Taking top 8 variants by coverage in window 9:73602757-73602758
2012-10-07 17:53:58,698 - DEBUG - Taking top 8 variants by coverage in window 9:73603037-73603039
2012-10-07 17:53:58,880 - DEBUG - Taking top 8 variants by coverage in window 9:73603069-73603070
2012-10-07 17:53:58,942 - DEBUG - Taking top 8 variants by coverage in window 9:73603140-73603141
2012-10-07 17:53:58,996 - DEBUG - Taking top 8 variants by coverage in window 9:73603155-73603156
2012-10-07 17:53:59,853 - DEBUG - Taking top 8 variants by coverage in window 9:73623933-73623934
2012-10-07 17:53:59,917 - DEBUG - Taking top 8 variants by coverage in window 9:73624607-73624608
2012-10-07 17:54:01,524 - DEBUG - Taking top 8 variants by coverage in window 9:73668255-73668256
2012-10-07 17:54:01,537 - DEBUG - Taking top 8 variants by coverage in window 9:73668257-73668259
2012-10-07 17:54:01,610 - DEBUG - Taking top 8 variants by coverage in window 9:73668267-73668268
2012-10-07 17:54:01,640 - DEBUG - Taking top 8 variants by coverage in window 9:73668280-73668281
2012-10-07 17:54:01,826 - DEBUG - Taking top 8 variants by coverage in window 9:73670877-73670878
2012-10-07 17:54:01,962 - DEBUG - Taking top 8 variants by coverage in window 9:73672477-73672478
2012-10-07 17:54:02,142 - DEBUG - Taking top 8 variants by coverage in window 9:73680519-73680520
2012-10-07 17:54:02,376 - DEBUG - Taking top 8 variants by coverage in window 9:73683068-73683069
2012-10-07 17:54:02,526 - DEBUG - Taking top 8 variants by coverage in window 9:73684562-73684563
2012-10-07 17:54:04,095 - DEBUG - Taking top 8 variants by coverage in window 9:73723745-73723746
2012-10-07 17:54:04,107 - DEBUG - Taking top 8 variants by coverage in window 9:73723753-73723754
2012-10-07 17:54:04,183 - DEBUG - Taking top 8 variants by coverage in window 9:73724708-73724715
2012-10-07 17:54:04,273 - DEBUG - Taking top 8 variants by coverage in window 9:73727191-73727193
2012-10-07 17:54:04,321 - DEBUG - Taking top 8 variants by coverage in window 9:73727546-73727547
2012-10-07 17:54:04,393 - DEBUG - Taking top 8 variants by coverage in window 9:73728523-73728524
2012-10-07 17:54:04,468 - DEBUG - Taking top 8 variants by coverage in window 9:73730205-73730206
2012-10-07 17:54:05,785 - DEBUG - Taking top 8 variants by coverage in window 9:73756367-73756368
2012-10-07 17:54:06,388 - DEBUG - Taking top 8 variants by coverage in window 9:73763251-73763252
2012-10-07 17:54:07,215 - DEBUG - Taking top 8 variants by coverage in window 9:73772178-73772179
2012-10-07 17:54:07,240 - DEBUG - Taking top 8 variants by coverage in window 9:73772180-73772181
2012-10-07 17:54:07,341 - DEBUG - Taking top 8 variants by coverage in window 9:73772788-73772802
2012-10-07 17:54:07,464 - DEBUG - Taking top 8 variants by coverage in window 9:73773668-73773669
2012-10-07 17:54:07,504 - DEBUG - Taking top 8 variants by coverage in window 9:73774208-73774213
2012-10-07 17:54:08,422 - DEBUG - Taking top 8 variants by coverage in window 9:73789962-73789963
2012-10-07 17:54:09,536 - DEBUG - Taking top 8 variants by coverage in window 9:73804624-73804625
2012-10-07 17:54:09,955 - DEBUG - Taking top 8 variants by coverage in window 9:73809484-73809485
2012-10-07 17:54:10,069 - DEBUG - Taking top 8 variants by coverage in window 9:73809991-73809992
2012-10-07 17:54:11,482 - DEBUG - Taking top 8 variants by coverage in window 9:73832801-73832803
2012-10-07 17:54:12,881 - DEBUG - Taking top 8 variants by coverage in window 9:73854046-73854048
2012-10-07 17:54:13,254 - DEBUG - Taking top 8 variants by coverage in window 9:73857757-73857758
2012-10-07 17:54:13,417 - DEBUG - Taking top 8 variants by coverage in window 9:73858517-73858518
2012-10-07 17:54:13,658 - DEBUG - Taking top 8 variants by coverage in window 9:73861980-73861986
2012-10-07 17:54:15,206 - DEBUG - Taking top 8 variants by coverage in window 9:73881550-73881557
2012-10-07 17:54:15,263 - DEBUG - Taking top 8 variants by coverage in window 9:73881574-73881575
2012-10-07 17:54:16,572 - DEBUG - Taking top 8 variants by coverage in window 9:73907570-73907571
2012-10-07 17:54:16,975 - DEBUG - Taking top 8 variants by coverage in window 9:73911270-73911275
2012-10-07 17:54:17,647 - DEBUG - Taking top 8 variants by coverage in window 9:73918018-73918029
2012-10-07 17:54:17,724 - DEBUG - Taking top 8 variants by coverage in window 9:73918273-73918274
2012-10-07 17:54:17,762 - DEBUG - Taking top 8 variants by coverage in window 9:73918477-73918478
2012-10-07 17:54:17,782 - DEBUG - Taking top 8 variants by coverage in window 9:73918499-73918500
2012-10-07 17:54:17,891 - DEBUG - Taking top 8 variants by coverage in window 9:73918776-73918778
2012-10-07 17:54:18,291 - DEBUG - Taking top 8 variants by coverage in window 9:73918779-73918780
2012-10-07 17:54:18,615 - DEBUG - Taking top 8 variants by coverage in window 9:73924057-73924058
2012-10-07 17:54:19,085 - DEBUG - Taking top 8 variants by coverage in window 9:73929878-73929879
2012-10-07 17:54:19,571 - DEBUG - Taking top 8 variants by coverage in window 9:73937313-73937314
2012-10-07 17:54:20,402 - DEBUG - Taking top 8 variants by coverage in window 9:73946230-73946231
2012-10-07 17:54:20,660 - DEBUG - Taking top 8 variants by coverage in window 9:73948480-73948481
2012-10-07 17:54:20,750 - DEBUG - Taking top 8 variants by coverage in window 9:73951208-73951210
2012-10-07 17:54:21,181 - DEBUG - Taking top 8 variants by coverage in window 9:73961712-73961723
2012-10-07 17:54:21,191 - DEBUG - Taking top 8 variants by coverage in window 9:73961741-73961742
2012-10-07 17:54:21,235 - DEBUG - Taking top 8 variants by coverage in window 9:73962105-73962106
2012-10-07 17:54:21,674 - DEBUG - Taking top 8 variants by coverage in window 9:73966679-73966680
2012-10-07 17:54:21,982 - DEBUG - Taking top 8 variants by coverage in window 9:73969692-73969693
2012-10-07 17:54:22,048 - DEBUG - Taking top 8 variants by coverage in window 9:73970052-73970053
2012-10-07 17:54:22,289 - DEBUG - Taking top 8 variants by coverage in window 9:73973119-73973120
2012-10-07 17:54:22,490 - DEBUG - Taking top 8 variants by coverage in window 9:73976158-73976159
2012-10-07 17:54:22,911 - DEBUG - Taking top 8 variants by coverage in window 9:73980258-73980259
2012-10-07 17:54:23,026 - DEBUG - Taking top 8 variants by coverage in window 9:73981256-73981261
2012-10-07 17:54:23,517 - DEBUG - Taking top 8 variants by coverage in window 9:73990751-73990760
2012-10-07 17:54:23,632 - DEBUG - Taking top 8 variants by coverage in window 9:73993339-73993340
2012-10-07 17:54:23,657 - DEBUG - Taking top 8 variants by coverage in window 9:73993349-73993351
2012-10-07 17:54:24,951 - DEBUG - Read 93091 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 17:54:25,186 - DEBUG - Read 100671 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 17:54:25,439 - DEBUG - Read 117263 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 17:54:25,719 - DEBUG - Read 116757 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 17:54:25,988 - DEBUG - Read 111684 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 17:54:26,228 - DEBUG - Read 104975 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 17:54:26,479 - DEBUG - Read 111914 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 17:54:26,723 - DEBUG - Read 100501 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 17:54:26,954 - DEBUG - Read 97377 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 17:54:27,240 - DEBUG - Read 97303 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 17:54:27,492 - DEBUG - Read 108174 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 17:54:27,712 - DEBUG - Read 95715 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 17:54:27,942 - DEBUG - Read 97050 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 17:54:28,177 - DEBUG - Read 107646 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 17:54:28,439 - DEBUG - Read 117073 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 17:54:28,656 - DEBUG - Read 89198 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 17:54:28,900 - DEBUG - Read 112419 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 17:54:29,152 - DEBUG - Read 108354 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 17:54:29,362 - DEBUG - Read 91869 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 17:54:29,593 - DEBUG - Read 93656 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 17:54:29,688 - DEBUG - Detected 20589 variants in 93091 reads
2012-10-07 17:54:29,840 - DEBUG - Detected 28844 variants in 100671 reads
2012-10-07 17:54:30,035 - DEBUG - Detected 36057 variants in 117263 reads
2012-10-07 17:54:30,258 - DEBUG - Detected 42964 variants in 116757 reads
2012-10-07 17:54:30,518 - DEBUG - Detected 48481 variants in 111684 reads
2012-10-07 17:54:30,782 - DEBUG - Detected 54451 variants in 104975 reads
2012-10-07 17:54:31,082 - DEBUG - Detected 66334 variants in 111914 reads
2012-10-07 17:54:31,421 - DEBUG - Detected 73216 variants in 100501 reads
2012-10-07 17:54:31,791 - DEBUG - Detected 78460 variants in 97377 reads
2012-10-07 17:54:32,183 - DEBUG - Detected 83963 variants in 97303 reads
2012-10-07 17:54:32,612 - DEBUG - Detected 89345 variants in 108174 reads
2012-10-07 17:54:33,081 - DEBUG - Detected 92822 variants in 95715 reads
2012-10-07 17:54:33,536 - DEBUG - Detected 96491 variants in 97050 reads
2012-10-07 17:54:34,014 - DEBUG - Detected 100236 variants in 107646 reads
2012-10-07 17:54:34,520 - DEBUG - Detected 107204 variants in 117073 reads
2012-10-07 17:54:35,035 - DEBUG - Detected 110762 variants in 89198 reads
2012-10-07 17:54:35,587 - DEBUG - Detected 114070 variants in 112419 reads
2012-10-07 17:54:36,201 - DEBUG - Detected 117665 variants in 108354 reads
2012-10-07 17:54:36,767 - DEBUG - Detected 121339 variants in 91869 reads
2012-10-07 17:54:37,349 - DEBUG - Detected 125233 variants in 93656 reads
2012-10-07 17:54:38,216 - DEBUG - Taking top 8 variants by coverage in window 9:74003892-74003911
2012-10-07 17:54:38,918 - DEBUG - Taking top 8 variants by coverage in window 9:74020305-74020306
2012-10-07 17:54:40,890 - DEBUG - Taking top 8 variants by coverage in window 9:74060675-74060676
2012-10-07 17:54:40,943 - DEBUG - Taking top 8 variants by coverage in window 9:74060704-74060705
2012-10-07 17:54:41,226 - DEBUG - Taking top 8 variants by coverage in window 9:74063443-74063446
2012-10-07 17:54:41,429 - DEBUG - Taking top 8 variants by coverage in window 9:74065640-74065641
2012-10-07 17:54:41,979 - DEBUG - Taking top 8 variants by coverage in window 9:74075451-74075477
2012-10-07 17:54:42,530 - DEBUG - Taking top 8 variants by coverage in window 9:74085471-74085472
2012-10-07 17:54:43,191 - DEBUG - Taking top 8 variants by coverage in window 9:74094240-74094241
2012-10-07 17:54:43,203 - DEBUG - Taking top 8 variants by coverage in window 9:74094242-74094243
2012-10-07 17:54:43,820 - DEBUG - Taking top 8 variants by coverage in window 9:74106973-74106974
2012-10-07 17:54:44,006 - DEBUG - Taking top 8 variants by coverage in window 9:74111837-74111869
2012-10-07 17:54:44,782 - DEBUG - Taking top 8 variants by coverage in window 9:74133125-74133126
2012-10-07 17:54:45,573 - DEBUG - Taking top 8 variants by coverage in window 9:74144622-74144623
2012-10-07 17:54:45,797 - DEBUG - Taking top 8 variants by coverage in window 9:74147820-74147826
2012-10-07 17:54:46,199 - DEBUG - Taking top 8 variants by coverage in window 9:74154237-74154239
2012-10-07 17:54:46,755 - DEBUG - Taking top 8 variants by coverage in window 9:74165344-74165345
2012-10-07 17:54:48,273 - DEBUG - Taking top 8 variants by coverage in window 9:74186306-74186307
2012-10-07 17:54:48,369 - DEBUG - Taking top 8 variants by coverage in window 9:74187591-74187594
2012-10-07 17:54:48,687 - DEBUG - Taking top 8 variants by coverage in window 9:74191068-74191069
2012-10-07 17:54:49,378 - DEBUG - Taking top 8 variants by coverage in window 9:74200449-74200450
2012-10-07 17:54:49,480 - DEBUG - Taking top 8 variants by coverage in window 9:74201949-74201950
2012-10-07 17:54:49,487 - DEBUG - Taking top 8 variants by coverage in window 9:74201953-74201954
2012-10-07 17:54:49,678 - DEBUG - Taking top 8 variants by coverage in window 9:74205543-74205544
2012-10-07 17:54:49,810 - DEBUG - Taking top 8 variants by coverage in window 9:74207404-74207405
2012-10-07 17:54:50,238 - DEBUG - Taking top 8 variants by coverage in window 9:74212177-74212178
2012-10-07 17:54:50,284 - DEBUG - Taking top 8 variants by coverage in window 9:74212486-74212488
2012-10-07 17:54:51,265 - DEBUG - Taking top 8 variants by coverage in window 9:74226621-74226623
2012-10-07 17:54:52,349 - DEBUG - Taking top 8 variants by coverage in window 9:74247145-74247146
2012-10-07 17:54:52,822 - DEBUG - Taking top 8 variants by coverage in window 9:74251863-74251864
2012-10-07 17:54:53,258 - DEBUG - Taking top 8 variants by coverage in window 9:74257546-74257550
2012-10-07 17:54:53,416 - DEBUG - Taking top 8 variants by coverage in window 9:74257612-74257613
2012-10-07 17:54:53,922 - DEBUG - Taking top 8 variants by coverage in window 9:74268638-74268639
2012-10-07 17:54:54,339 - DEBUG - Taking top 8 variants by coverage in window 9:74271810-74271811
2012-10-07 17:54:55,639 - DEBUG - Taking top 8 variants by coverage in window 9:74297020-74297021
2012-10-07 17:54:56,209 - DEBUG - Taking top 8 variants by coverage in window 9:74305043-74305044
2012-10-07 17:54:56,418 - DEBUG - Taking top 8 variants by coverage in window 9:74306842-74306846
2012-10-07 17:54:56,547 - DEBUG - Taking top 8 variants by coverage in window 9:74307523-74307525
2012-10-07 17:54:56,755 - DEBUG - Taking top 8 variants by coverage in window 9:74310623-74310624
2012-10-07 17:54:56,945 - DEBUG - Taking top 8 variants by coverage in window 9:74312468-74312469
2012-10-07 17:54:56,983 - DEBUG - Taking top 8 variants by coverage in window 9:74312622-74312629
2012-10-07 17:54:57,002 - DEBUG - Taking top 8 variants by coverage in window 9:74312642-74312643
2012-10-07 17:54:57,427 - DEBUG - Taking top 8 variants by coverage in window 9:74319020-74319021
2012-10-07 17:54:57,457 - DEBUG - Taking top 8 variants by coverage in window 9:74319190-74319191
2012-10-07 17:54:57,473 - DEBUG - Taking top 8 variants by coverage in window 9:74319192-74319193
2012-10-07 17:54:57,594 - DEBUG - Taking top 8 variants by coverage in window 9:74320422-74320424
2012-10-07 17:54:57,887 - DEBUG - Taking top 8 variants by coverage in window 9:74325573-74325574
2012-10-07 17:54:58,025 - DEBUG - Taking top 8 variants by coverage in window 9:74326832-74326846
2012-10-07 17:54:58,462 - DEBUG - Taking top 8 variants by coverage in window 9:74331412-74331413
2012-10-07 17:55:00,461 - DEBUG - Taking top 8 variants by coverage in window 9:74352589-74352593
2012-10-07 17:55:00,694 - DEBUG - Taking top 8 variants by coverage in window 9:74354507-74354509
2012-10-07 17:55:00,825 - DEBUG - Taking top 8 variants by coverage in window 9:74355213-74355214
2012-10-07 17:55:01,160 - DEBUG - Taking top 8 variants by coverage in window 9:74358047-74358048
2012-10-07 17:55:01,189 - DEBUG - Taking top 8 variants by coverage in window 9:74358526-74358534
2012-10-07 17:55:01,307 - DEBUG - Taking top 8 variants by coverage in window 9:74359355-74359356
2012-10-07 17:55:02,047 - DEBUG - Taking top 8 variants by coverage in window 9:74376276-74376277
2012-10-07 17:55:02,081 - DEBUG - Taking top 8 variants by coverage in window 9:74376311-74376312
2012-10-07 17:55:02,172 - DEBUG - Taking top 8 variants by coverage in window 9:74376333-74376334
2012-10-07 17:55:02,192 - DEBUG - Taking top 8 variants by coverage in window 9:74376340-74376342
2012-10-07 17:55:02,233 - DEBUG - Taking top 8 variants by coverage in window 9:74376364-74376365
2012-10-07 17:55:03,062 - DEBUG - Taking top 8 variants by coverage in window 9:74387857-74387858
2012-10-07 17:55:03,747 - DEBUG - Taking top 8 variants by coverage in window 9:74396934-74396935
2012-10-07 17:55:03,843 - DEBUG - Taking top 8 variants by coverage in window 9:74400095-74400096
2012-10-07 17:55:04,181 - DEBUG - Taking top 8 variants by coverage in window 9:74406314-74406315
2012-10-07 17:55:04,195 - DEBUG - Taking top 8 variants by coverage in window 9:74406352-74406353
2012-10-07 17:55:04,334 - DEBUG - Taking top 8 variants by coverage in window 9:74408161-74408162
2012-10-07 17:55:04,351 - DEBUG - Taking top 8 variants by coverage in window 9:74408181-74408182
2012-10-07 17:55:04,458 - DEBUG - Taking top 8 variants by coverage in window 9:74410604-74410605
2012-10-07 17:55:04,576 - DEBUG - Taking top 8 variants by coverage in window 9:74412072-74412075
2012-10-07 17:55:04,622 - DEBUG - Taking top 8 variants by coverage in window 9:74412093-74412094
2012-10-07 17:55:05,463 - DEBUG - Taking top 8 variants by coverage in window 9:74426240-74426241
2012-10-07 17:55:05,724 - DEBUG - Taking top 8 variants by coverage in window 9:74430695-74430696
2012-10-07 17:55:05,835 - DEBUG - Taking top 8 variants by coverage in window 9:74432497-74432500
2012-10-07 17:55:06,344 - DEBUG - Taking top 8 variants by coverage in window 9:74442078-74442079
2012-10-07 17:55:08,158 - DEBUG - Taking top 8 variants by coverage in window 9:74481557-74481558
2012-10-07 17:55:08,231 - DEBUG - Taking top 8 variants by coverage in window 9:74489519-74489520
2012-10-07 17:55:08,562 - DEBUG - Taking top 8 variants by coverage in window 9:74500686-74500687
2012-10-07 17:55:09,010 - DEBUG - Taking top 8 variants by coverage in window 9:74512533-74512534
2012-10-07 17:55:09,325 - DEBUG - Taking top 8 variants by coverage in window 9:74529245-74529246
2012-10-07 17:55:09,357 - DEBUG - Taking top 8 variants by coverage in window 9:74530389-74530390
2012-10-07 17:55:09,470 - DEBUG - Taking top 8 variants by coverage in window 9:74532372-74532373
2012-10-07 17:55:09,576 - DEBUG - Taking top 8 variants by coverage in window 9:74538718-74538730
2012-10-07 17:55:09,738 - DEBUG - Taking top 8 variants by coverage in window 9:74541200-74541201
2012-10-07 17:55:11,070 - DEBUG - Taking top 8 variants by coverage in window 9:74561440-74561443
2012-10-07 17:55:11,091 - DEBUG - Taking top 8 variants by coverage in window 9:74561784-74561785
2012-10-07 17:55:11,176 - DEBUG - Taking top 8 variants by coverage in window 9:74563403-74563404
2012-10-07 17:55:11,913 - DEBUG - Taking top 8 variants by coverage in window 9:74573020-74573021
2012-10-07 17:55:13,057 - DEBUG - Taking top 8 variants by coverage in window 9:74585555-74585556
2012-10-07 17:55:13,471 - DEBUG - Taking top 8 variants by coverage in window 9:74590096-74590099
2012-10-07 17:55:13,833 - DEBUG - Taking top 8 variants by coverage in window 9:74597224-74597225
2012-10-07 17:55:13,897 - DEBUG - Taking top 8 variants by coverage in window 9:74597398-74597411
2012-10-07 17:55:14,023 - DEBUG - Taking top 8 variants by coverage in window 9:74597448-74597458
2012-10-07 17:55:14,064 - DEBUG - Taking top 8 variants by coverage in window 9:74597552-74597573
2012-10-07 17:55:14,158 - DEBUG - Taking top 8 variants by coverage in window 9:74597588-74597589
2012-10-07 17:55:14,400 - DEBUG - Taking top 8 variants by coverage in window 9:74599996-74599998
2012-10-07 17:55:14,437 - DEBUG - Taking top 8 variants by coverage in window 9:74600089-74600090
2012-10-07 17:55:14,523 - DEBUG - Taking top 8 variants by coverage in window 9:74600905-74600906
2012-10-07 17:55:14,791 - DEBUG - Taking top 8 variants by coverage in window 9:74604860-74604865
2012-10-07 17:55:14,882 - DEBUG - Taking top 8 variants by coverage in window 9:74607987-74607988
2012-10-07 17:55:14,905 - DEBUG - Taking top 8 variants by coverage in window 9:74608014-74608015
2012-10-07 17:55:15,054 - DEBUG - Taking top 8 variants by coverage in window 9:74610069-74610070
2012-10-07 17:55:15,878 - DEBUG - Taking top 8 variants by coverage in window 9:74622682-74622683
2012-10-07 17:55:16,142 - DEBUG - Taking top 8 variants by coverage in window 9:74625573-74625574
2012-10-07 17:55:16,422 - DEBUG - Taking top 8 variants by coverage in window 9:74627716-74627721
2012-10-07 17:55:16,863 - DEBUG - Taking top 8 variants by coverage in window 9:74632099-74632100
2012-10-07 17:55:17,252 - DEBUG - Taking top 8 variants by coverage in window 9:74639591-74639592
2012-10-07 17:55:18,348 - DEBUG - Taking top 8 variants by coverage in window 9:74652862-74652863
2012-10-07 17:55:18,417 - DEBUG - Taking top 8 variants by coverage in window 9:74652864-74652866
2012-10-07 17:55:18,526 - DEBUG - Taking top 8 variants by coverage in window 9:74652883-74652884
2012-10-07 17:55:18,760 - DEBUG - Taking top 8 variants by coverage in window 9:74655076-74655077
2012-10-07 17:55:19,316 - DEBUG - Taking top 8 variants by coverage in window 9:74660910-74660918
2012-10-07 17:55:19,355 - DEBUG - Taking top 8 variants by coverage in window 9:74660926-74660932
2012-10-07 17:55:19,800 - DEBUG - Taking top 8 variants by coverage in window 9:74663385-74663386
2012-10-07 17:55:19,917 - DEBUG - Taking top 8 variants by coverage in window 9:74664177-74664178
2012-10-07 17:55:20,652 - DEBUG - Taking top 8 variants by coverage in window 9:74676093-74676094
2012-10-07 17:55:20,766 - DEBUG - Taking top 8 variants by coverage in window 9:74677448-74677449
2012-10-07 17:55:20,840 - DEBUG - Taking top 8 variants by coverage in window 9:74678132-74678133
2012-10-07 17:55:21,115 - DEBUG - Taking top 8 variants by coverage in window 9:74684119-74684123
2012-10-07 17:55:21,300 - DEBUG - Taking top 8 variants by coverage in window 9:74687219-74687220
2012-10-07 17:55:21,509 - DEBUG - Taking top 8 variants by coverage in window 9:74692267-74692268
2012-10-07 17:55:21,839 - DEBUG - Taking top 8 variants by coverage in window 9:74707628-74707629
2012-10-07 17:55:22,596 - DEBUG - Taking top 8 variants by coverage in window 9:74724391-74724393
2012-10-07 17:55:22,659 - DEBUG - Taking top 8 variants by coverage in window 9:74725614-74725615
2012-10-07 17:55:22,744 - DEBUG - Taking top 8 variants by coverage in window 9:74727801-74727802
2012-10-07 17:55:23,097 - DEBUG - Taking top 8 variants by coverage in window 9:74732978-74732979
2012-10-07 17:55:23,729 - DEBUG - Taking top 8 variants by coverage in window 9:74747707-74747709
2012-10-07 17:55:24,305 - DEBUG - Taking top 8 variants by coverage in window 9:74756205-74756207
2012-10-07 17:55:24,450 - DEBUG - Taking top 8 variants by coverage in window 9:74756627-74756628
2012-10-07 17:55:25,493 - DEBUG - Taking top 8 variants by coverage in window 9:74781403-74781405
2012-10-07 17:55:25,566 - DEBUG - Taking top 8 variants by coverage in window 9:74781917-74781918
2012-10-07 17:55:25,586 - DEBUG - Taking top 8 variants by coverage in window 9:74781923-74781926
2012-10-07 17:55:25,857 - DEBUG - Taking top 8 variants by coverage in window 9:74787954-74787955
2012-10-07 17:55:26,131 - DEBUG - Taking top 8 variants by coverage in window 9:74792122-74792123
2012-10-07 17:55:26,389 - DEBUG - Taking top 8 variants by coverage in window 9:74795396-74795397
2012-10-07 17:55:27,640 - DEBUG - Taking top 8 variants by coverage in window 9:74816249-74816256
2012-10-07 17:55:28,862 - DEBUG - Taking top 8 variants by coverage in window 9:74828813-74828814
2012-10-07 17:55:28,899 - DEBUG - Taking top 8 variants by coverage in window 9:74828826-74828827
2012-10-07 17:55:29,813 - DEBUG - Taking top 8 variants by coverage in window 9:74841055-74841057
2012-10-07 17:55:29,904 - DEBUG - Taking top 8 variants by coverage in window 9:74841360-74841361
2012-10-07 17:55:30,054 - DEBUG - Taking top 8 variants by coverage in window 9:74842070-74842071
2012-10-07 17:55:30,118 - DEBUG - Taking top 8 variants by coverage in window 9:74842131-74842132
2012-10-07 17:55:30,584 - DEBUG - Taking top 8 variants by coverage in window 9:74847518-74847523
2012-10-07 17:55:31,507 - DEBUG - Taking top 8 variants by coverage in window 9:74858289-74858290
2012-10-07 17:55:31,763 - DEBUG - Taking top 8 variants by coverage in window 9:74861693-74861694
2012-10-07 17:55:31,991 - DEBUG - Taking top 8 variants by coverage in window 9:74865816-74865817
2012-10-07 17:55:32,509 - DEBUG - Taking top 8 variants by coverage in window 9:74875998-74875999
2012-10-07 17:55:32,728 - DEBUG - Taking top 8 variants by coverage in window 9:74878547-74878549
2012-10-07 17:55:32,737 - DEBUG - Taking top 8 variants by coverage in window 9:74878554-74878555
2012-10-07 17:55:32,870 - DEBUG - Taking top 8 variants by coverage in window 9:74880775-74880776
2012-10-07 17:55:33,090 - DEBUG - Taking top 8 variants by coverage in window 9:74884505-74884506
2012-10-07 17:55:33,443 - DEBUG - Taking top 8 variants by coverage in window 9:74892281-74892282
2012-10-07 17:55:33,910 - DEBUG - Taking top 8 variants by coverage in window 9:74900028-74900036
2012-10-07 17:55:34,135 - DEBUG - Taking top 8 variants by coverage in window 9:74903285-74903286
2012-10-07 17:55:34,273 - DEBUG - Taking top 8 variants by coverage in window 9:74904628-74904629
2012-10-07 17:55:35,005 - DEBUG - Taking top 8 variants by coverage in window 9:74915306-74915308
2012-10-07 17:55:35,441 - DEBUG - Taking top 8 variants by coverage in window 9:74923438-74923439
2012-10-07 17:55:35,513 - DEBUG - Taking top 8 variants by coverage in window 9:74923747-74923750
2012-10-07 17:55:35,912 - DEBUG - Taking top 8 variants by coverage in window 9:74928384-74928385
2012-10-07 17:55:36,376 - DEBUG - Taking top 8 variants by coverage in window 9:74934573-74934574
2012-10-07 17:55:36,553 - DEBUG - Taking top 8 variants by coverage in window 9:74936112-74936114
2012-10-07 17:55:36,593 - DEBUG - Taking top 8 variants by coverage in window 9:74936115-74936116
2012-10-07 17:55:37,193 - DEBUG - Taking top 8 variants by coverage in window 9:74943893-74943896
2012-10-07 17:55:37,411 - DEBUG - Taking top 8 variants by coverage in window 9:74946288-74946289
2012-10-07 17:55:37,851 - DEBUG - Taking top 8 variants by coverage in window 9:74953275-74953276
2012-10-07 17:55:39,130 - DEBUG - Taking top 8 variants by coverage in window 9:74975893-74975894
2012-10-07 17:55:39,228 - DEBUG - Taking top 8 variants by coverage in window 9:74977209-74977210
2012-10-07 17:55:39,239 - DEBUG - Taking top 8 variants by coverage in window 9:74977211-74977212
2012-10-07 17:55:39,346 - DEBUG - Taking top 8 variants by coverage in window 9:74979621-74979622
2012-10-07 17:55:39,797 - DEBUG - Taking top 8 variants by coverage in window 9:74988964-74988965
2012-10-07 17:55:39,813 - DEBUG - Taking top 8 variants by coverage in window 9:74988978-74988979
2012-10-07 17:55:39,840 - DEBUG - Taking top 8 variants by coverage in window 9:74989119-74989120
2012-10-07 17:55:40,399 - DEBUG - Taking top 8 variants by coverage in window 9:74997951-74997952
2012-10-07 17:55:41,254 - INFO - Processing region 9:75000000-76000000
2012-10-07 17:55:41,476 - DEBUG - Read 93371 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 17:55:41,716 - DEBUG - Read 101529 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 17:55:41,974 - DEBUG - Read 118888 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 17:55:42,262 - DEBUG - Read 117824 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 17:55:42,536 - DEBUG - Read 112132 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 17:55:42,783 - DEBUG - Read 106554 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 17:55:43,042 - DEBUG - Read 114314 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 17:55:43,292 - DEBUG - Read 102674 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 17:55:43,528 - DEBUG - Read 97488 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 17:55:43,768 - DEBUG - Read 98281 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 17:55:44,022 - DEBUG - Read 108230 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 17:55:44,249 - DEBUG - Read 96941 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 17:55:44,487 - DEBUG - Read 99205 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 17:55:44,745 - DEBUG - Read 109408 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 17:55:45,013 - DEBUG - Read 118493 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 17:55:45,235 - DEBUG - Read 90084 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 17:55:45,484 - DEBUG - Read 113824 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 17:55:45,738 - DEBUG - Read 108142 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 17:55:45,953 - DEBUG - Read 92558 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 17:55:46,187 - DEBUG - Read 94468 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 17:55:46,291 - DEBUG - Detected 24004 variants in 93371 reads
2012-10-07 17:55:46,463 - DEBUG - Detected 33492 variants in 101529 reads
2012-10-07 17:55:46,699 - DEBUG - Detected 42903 variants in 118888 reads
2012-10-07 17:55:46,960 - DEBUG - Detected 52381 variants in 117824 reads
2012-10-07 17:55:47,257 - DEBUG - Detected 59262 variants in 112132 reads
2012-10-07 17:55:47,583 - DEBUG - Detected 65139 variants in 106554 reads
2012-10-07 17:55:47,946 - DEBUG - Detected 79183 variants in 114314 reads
2012-10-07 17:55:48,359 - DEBUG - Detected 86359 variants in 102674 reads
2012-10-07 17:55:48,844 - DEBUG - Detected 92371 variants in 97488 reads
2012-10-07 17:55:49,317 - DEBUG - Detected 97124 variants in 98281 reads
2012-10-07 17:55:49,823 - DEBUG - Detected 102154 variants in 108230 reads
2012-10-07 17:55:50,338 - DEBUG - Detected 106316 variants in 96941 reads
2012-10-07 17:55:50,867 - DEBUG - Detected 111102 variants in 99205 reads
2012-10-07 17:55:51,434 - DEBUG - Detected 115702 variants in 109408 reads
2012-10-07 17:55:52,093 - DEBUG - Detected 123181 variants in 118493 reads
2012-10-07 17:55:52,707 - DEBUG - Detected 127202 variants in 90084 reads
2012-10-07 17:55:53,362 - DEBUG - Detected 130991 variants in 113824 reads
2012-10-07 17:55:54,032 - DEBUG - Detected 136525 variants in 108142 reads
2012-10-07 17:55:54,776 - DEBUG - Detected 140424 variants in 92558 reads
2012-10-07 17:55:55,477 - DEBUG - Detected 144621 variants in 94468 reads
2012-10-07 17:55:56,832 - DEBUG - Taking top 8 variants by coverage in window 9:75005988-75005989
2012-10-07 17:55:57,286 - DEBUG - Taking top 8 variants by coverage in window 9:75019175-75019176
2012-10-07 17:55:57,691 - DEBUG - Taking top 8 variants by coverage in window 9:75028158-75028159
2012-10-07 17:55:58,162 - DEBUG - Taking top 8 variants by coverage in window 9:75037462-75037463
2012-10-07 17:55:59,059 - DEBUG - Taking top 8 variants by coverage in window 9:75052865-75052866
2012-10-07 17:55:59,269 - DEBUG - Taking top 8 variants by coverage in window 9:75056597-75056603
2012-10-07 17:56:00,518 - DEBUG - Taking top 8 variants by coverage in window 9:75076330-75076331
2012-10-07 17:56:00,831 - DEBUG - Taking top 8 variants by coverage in window 9:75080654-75080656
2012-10-07 17:56:01,884 - DEBUG - Taking top 8 variants by coverage in window 9:75094135-75094138
2012-10-07 17:56:01,914 - DEBUG - Taking top 8 variants by coverage in window 9:75094143-75094144
2012-10-07 17:56:02,213 - DEBUG - Taking top 8 variants by coverage in window 9:75096659-75096660
2012-10-07 17:56:02,479 - DEBUG - Taking top 8 variants by coverage in window 9:75097128-75097130
2012-10-07 17:56:02,648 - DEBUG - Taking top 8 variants by coverage in window 9:75098495-75098496
2012-10-07 17:56:03,215 - DEBUG - Taking top 8 variants by coverage in window 9:75103312-75103315
2012-10-07 17:56:03,792 - DEBUG - Taking top 8 variants by coverage in window 9:75107161-75107166
2012-10-07 17:56:03,991 - DEBUG - Taking top 8 variants by coverage in window 9:75107973-75107979
2012-10-07 17:56:04,188 - DEBUG - Taking top 8 variants by coverage in window 9:75109527-75109528
2012-10-07 17:56:04,830 - DEBUG - Taking top 8 variants by coverage in window 9:75116422-75116426
2012-10-07 17:56:04,862 - DEBUG - Taking top 8 variants by coverage in window 9:75116438-75116439
2012-10-07 17:56:04,993 - DEBUG - Taking top 8 variants by coverage in window 9:75116880-75116883
2012-10-07 17:56:05,051 - DEBUG - Taking top 8 variants by coverage in window 9:75116895-75116896
2012-10-07 17:56:05,414 - DEBUG - Taking top 8 variants by coverage in window 9:75119522-75119523
2012-10-07 17:56:05,500 - DEBUG - Taking top 8 variants by coverage in window 9:75119709-75119710
2012-10-07 17:56:05,959 - DEBUG - Taking top 8 variants by coverage in window 9:75123903-75123912
2012-10-07 17:56:06,263 - DEBUG - Taking top 8 variants by coverage in window 9:75123985-75123987
2012-10-07 17:56:06,683 - DEBUG - Taking top 8 variants by coverage in window 9:75125399-75125400
2012-10-07 17:56:06,961 - DEBUG - Taking top 8 variants by coverage in window 9:75128916-75128917
2012-10-07 17:56:07,227 - DEBUG - Taking top 8 variants by coverage in window 9:75131370-75131371
2012-10-07 17:56:07,245 - DEBUG - Taking top 8 variants by coverage in window 9:75131371-75131372
2012-10-07 17:56:07,272 - DEBUG - Taking top 8 variants by coverage in window 9:75131384-75131385
2012-10-07 17:56:09,182 - DEBUG - Taking top 8 variants by coverage in window 9:75149529-75149530
2012-10-07 17:56:10,104 - DEBUG - Taking top 8 variants by coverage in window 9:75156799-75156800
2012-10-07 17:56:10,305 - DEBUG - Taking top 8 variants by coverage in window 9:75156862-75156867
2012-10-07 17:56:10,463 - DEBUG - Taking top 8 variants by coverage in window 9:75156910-75156911
2012-10-07 17:56:10,523 - DEBUG - Taking top 8 variants by coverage in window 9:75156917-75156918
2012-10-07 17:56:10,575 - DEBUG - Taking top 8 variants by coverage in window 9:75156933-75156934
2012-10-07 17:56:10,651 - DEBUG - Taking top 8 variants by coverage in window 9:75157025-75157026
2012-10-07 17:56:11,156 - DEBUG - Taking top 8 variants by coverage in window 9:75161009-75161011
2012-10-07 17:56:11,216 - DEBUG - Taking top 8 variants by coverage in window 9:75161394-75161395
2012-10-07 17:56:12,470 - DEBUG - Taking top 8 variants by coverage in window 9:75169367-75169368
2012-10-07 17:56:12,501 - DEBUG - Taking top 8 variants by coverage in window 9:75169384-75169386
2012-10-07 17:56:12,623 - DEBUG - Taking top 8 variants by coverage in window 9:75169960-75169961
2012-10-07 17:56:13,037 - DEBUG - Taking top 8 variants by coverage in window 9:75172448-75172455
2012-10-07 17:56:13,166 - DEBUG - Taking top 8 variants by coverage in window 9:75173054-75173055
2012-10-07 17:56:13,433 - DEBUG - Taking top 8 variants by coverage in window 9:75174558-75174562
2012-10-07 17:56:14,078 - DEBUG - Taking top 8 variants by coverage in window 9:75179148-75179149
2012-10-07 17:56:14,276 - DEBUG - Taking top 8 variants by coverage in window 9:75181094-75181097
2012-10-07 17:56:14,886 - DEBUG - Taking top 8 variants by coverage in window 9:75183297-75183300
2012-10-07 17:56:16,387 - DEBUG - Taking top 8 variants by coverage in window 9:75194080-75194085
2012-10-07 17:56:16,401 - DEBUG - Taking top 8 variants by coverage in window 9:75194087-75194088
2012-10-07 17:56:16,425 - DEBUG - Taking top 8 variants by coverage in window 9:75194096-75194097
2012-10-07 17:56:16,930 - DEBUG - Taking top 8 variants by coverage in window 9:75200358-75200364
2012-10-07 17:56:18,070 - DEBUG - Taking top 8 variants by coverage in window 9:75212836-75212837
2012-10-07 17:56:18,181 - DEBUG - Taking top 8 variants by coverage in window 9:75213502-75213503
2012-10-07 17:56:18,234 - DEBUG - Taking top 8 variants by coverage in window 9:75213541-75213542
2012-10-07 17:56:18,705 - DEBUG - Taking top 8 variants by coverage in window 9:75217750-75217754
2012-10-07 17:56:19,485 - DEBUG - Taking top 8 variants by coverage in window 9:75223669-75223674
2012-10-07 17:56:20,173 - DEBUG - Taking top 8 variants by coverage in window 9:75227675-75227678
2012-10-07 17:56:20,227 - DEBUG - Taking top 8 variants by coverage in window 9:75227686-75227688
2012-10-07 17:56:20,564 - DEBUG - Taking top 8 variants by coverage in window 9:75227730-75227733
2012-10-07 17:56:20,822 - DEBUG - Taking top 8 variants by coverage in window 9:75227745-75227746
2012-10-07 17:56:21,021 - DEBUG - Taking top 8 variants by coverage in window 9:75227818-75227829
2012-10-07 17:56:21,255 - DEBUG - Taking top 8 variants by coverage in window 9:75227852-75227863
2012-10-07 17:56:21,972 - DEBUG - Taking top 8 variants by coverage in window 9:75234414-75234423
2012-10-07 17:56:22,004 - DEBUG - Taking top 8 variants by coverage in window 9:75234426-75234427
2012-10-07 17:56:22,530 - DEBUG - Taking top 8 variants by coverage in window 9:75238176-75238177
2012-10-07 17:56:23,047 - DEBUG - Taking top 8 variants by coverage in window 9:75241170-75241171
2012-10-07 17:56:23,154 - DEBUG - Taking top 8 variants by coverage in window 9:75241338-75241339
2012-10-07 17:56:23,318 - DEBUG - Taking top 8 variants by coverage in window 9:75242927-75242928
2012-10-07 17:56:23,419 - DEBUG - Taking top 8 variants by coverage in window 9:75243464-75243466
2012-10-07 17:56:23,749 - DEBUG - Taking top 8 variants by coverage in window 9:75247147-75247148
2012-10-07 17:56:23,896 - DEBUG - Taking top 8 variants by coverage in window 9:75248435-75248436
2012-10-07 17:56:24,198 - DEBUG - Taking top 8 variants by coverage in window 9:75252236-75252252
2012-10-07 17:56:24,266 - DEBUG - Taking top 8 variants by coverage in window 9:75253268-75253284
2012-10-07 17:56:24,413 - DEBUG - Taking top 8 variants by coverage in window 9:75256129-75256133
2012-10-07 17:56:24,820 - DEBUG - Taking top 8 variants by coverage in window 9:75260120-75260121
2012-10-07 17:56:24,843 - DEBUG - Taking top 8 variants by coverage in window 9:75260153-75260154
2012-10-07 17:56:24,855 - DEBUG - Taking top 8 variants by coverage in window 9:75260155-75260156
2012-10-07 17:56:25,915 - DEBUG - Taking top 8 variants by coverage in window 9:75271905-75271906
2012-10-07 17:56:26,781 - DEBUG - Taking top 8 variants by coverage in window 9:75283694-75283695
2012-10-07 17:56:26,915 - DEBUG - Taking top 8 variants by coverage in window 9:75285456-75285458
2012-10-07 17:56:27,725 - DEBUG - Taking top 8 variants by coverage in window 9:75294613-75294614
2012-10-07 17:56:28,013 - DEBUG - Taking top 8 variants by coverage in window 9:75295981-75295982
2012-10-07 17:56:28,185 - DEBUG - Taking top 8 variants by coverage in window 9:75297337-75297338
2012-10-07 17:56:28,288 - DEBUG - Taking top 8 variants by coverage in window 9:75297424-75297425
2012-10-07 17:56:29,044 - DEBUG - Taking top 8 variants by coverage in window 9:75304215-75304216
2012-10-07 17:56:29,125 - DEBUG - Taking top 8 variants by coverage in window 9:75304531-75304532
2012-10-07 17:56:29,999 - DEBUG - Taking top 8 variants by coverage in window 9:75313423-75313425
2012-10-07 17:56:30,175 - DEBUG - Taking top 8 variants by coverage in window 9:75316101-75316113
2012-10-07 17:56:30,577 - DEBUG - Taking top 8 variants by coverage in window 9:75322335-75322337
2012-10-07 17:56:30,861 - DEBUG - Taking top 8 variants by coverage in window 9:75322492-75322500
2012-10-07 17:56:31,208 - DEBUG - Taking top 8 variants by coverage in window 9:75322554-75322560
2012-10-07 17:56:31,812 - DEBUG - Taking top 8 variants by coverage in window 9:75326875-75326876
2012-10-07 17:56:31,994 - DEBUG - Taking top 8 variants by coverage in window 9:75327717-75327719
2012-10-07 17:56:32,562 - DEBUG - Taking top 8 variants by coverage in window 9:75331520-75331523
2012-10-07 17:56:32,753 - DEBUG - Taking top 8 variants by coverage in window 9:75331912-75331913
2012-10-07 17:56:33,107 - DEBUG - Taking top 8 variants by coverage in window 9:75336656-75336658
2012-10-07 17:56:33,562 - DEBUG - Taking top 8 variants by coverage in window 9:75338607-75338608
2012-10-07 17:56:33,595 - DEBUG - Taking top 8 variants by coverage in window 9:75338634-75338635
2012-10-07 17:56:34,635 - DEBUG - Taking top 8 variants by coverage in window 9:75342624-75342625
2012-10-07 17:56:34,739 - DEBUG - Taking top 8 variants by coverage in window 9:75343075-75343076
2012-10-07 17:56:35,175 - DEBUG - Taking top 8 variants by coverage in window 9:75346739-75346744
2012-10-07 17:56:35,772 - DEBUG - Taking top 8 variants by coverage in window 9:75351209-75351210
2012-10-07 17:56:35,970 - DEBUG - Taking top 8 variants by coverage in window 9:75353126-75353127
2012-10-07 17:56:36,387 - DEBUG - Taking top 8 variants by coverage in window 9:75356923-75356926
2012-10-07 17:56:37,465 - DEBUG - Taking top 8 variants by coverage in window 9:75368116-75368119
2012-10-07 17:56:38,892 - DEBUG - Taking top 8 variants by coverage in window 9:75390408-75390410
2012-10-07 17:56:39,140 - DEBUG - Taking top 8 variants by coverage in window 9:75393217-75393218
2012-10-07 17:56:39,168 - DEBUG - Taking top 8 variants by coverage in window 9:75393410-75393411
2012-10-07 17:56:39,345 - DEBUG - Taking top 8 variants by coverage in window 9:75395776-75395777
2012-10-07 17:56:39,542 - DEBUG - Taking top 8 variants by coverage in window 9:75400263-75400264
2012-10-07 17:56:39,785 - DEBUG - Taking top 8 variants by coverage in window 9:75403681-75403682
2012-10-07 17:56:39,836 - DEBUG - Taking top 8 variants by coverage in window 9:75404341-75404342
2012-10-07 17:56:40,497 - DEBUG - Taking top 8 variants by coverage in window 9:75412944-75412945
2012-10-07 17:56:40,654 - DEBUG - Taking top 8 variants by coverage in window 9:75415059-75415060
2012-10-07 17:56:41,091 - DEBUG - Taking top 8 variants by coverage in window 9:75420906-75420911
2012-10-07 17:56:41,264 - DEBUG - Taking top 8 variants by coverage in window 9:75423663-75423664
2012-10-07 17:56:41,421 - DEBUG - Taking top 8 variants by coverage in window 9:75425385-75425386
2012-10-07 17:56:41,434 - DEBUG - Taking top 8 variants by coverage in window 9:75425386-75425389
2012-10-07 17:56:41,521 - DEBUG - Taking top 8 variants by coverage in window 9:75425878-75425890
2012-10-07 17:56:42,189 - DEBUG - Taking top 8 variants by coverage in window 9:75433613-75433617
2012-10-07 17:56:42,398 - DEBUG - Taking top 8 variants by coverage in window 9:75436134-75436136
2012-10-07 17:56:42,437 - DEBUG - Taking top 8 variants by coverage in window 9:75436187-75436188
2012-10-07 17:56:42,826 - DEBUG - Taking top 8 variants by coverage in window 9:75438512-75438513
2012-10-07 17:56:43,094 - DEBUG - Taking top 8 variants by coverage in window 9:75441815-75441817
2012-10-07 17:56:43,808 - DEBUG - Taking top 8 variants by coverage in window 9:75452711-75452720
2012-10-07 17:56:43,912 - DEBUG - Taking top 8 variants by coverage in window 9:75453850-75453851
2012-10-07 17:56:43,918 - DEBUG - Taking top 8 variants by coverage in window 9:75453851-75453852
2012-10-07 17:56:44,038 - DEBUG - Taking top 8 variants by coverage in window 9:75454165-75454166
2012-10-07 17:56:44,203 - DEBUG - Taking top 8 variants by coverage in window 9:75455066-75455067
2012-10-07 17:56:44,238 - DEBUG - Taking top 8 variants by coverage in window 9:75455073-75455074
2012-10-07 17:56:44,395 - DEBUG - Taking top 8 variants by coverage in window 9:75456098-75456099
2012-10-07 17:56:45,074 - DEBUG - Taking top 8 variants by coverage in window 9:75464908-75464909
2012-10-07 17:56:46,335 - DEBUG - Taking top 8 variants by coverage in window 9:75479619-75479620
2012-10-07 17:56:47,154 - DEBUG - Taking top 8 variants by coverage in window 9:75488020-75488029
2012-10-07 17:56:47,203 - DEBUG - Taking top 8 variants by coverage in window 9:75488056-75488057
2012-10-07 17:56:47,713 - DEBUG - Taking top 8 variants by coverage in window 9:75490402-75490403
2012-10-07 17:56:48,285 - DEBUG - Taking top 8 variants by coverage in window 9:75494036-75494037
2012-10-07 17:56:50,550 - DEBUG - Taking top 8 variants by coverage in window 9:75519320-75519325
2012-10-07 17:56:50,754 - DEBUG - Taking top 8 variants by coverage in window 9:75522857-75522858
2012-10-07 17:56:50,888 - DEBUG - Taking top 8 variants by coverage in window 9:75523935-75523936
2012-10-07 17:56:51,113 - DEBUG - Taking top 8 variants by coverage in window 9:75528955-75528956
2012-10-07 17:56:51,125 - DEBUG - Taking top 8 variants by coverage in window 9:75528976-75528977
2012-10-07 17:56:51,874 - DEBUG - Taking top 8 variants by coverage in window 9:75541057-75541058
2012-10-07 17:56:52,149 - DEBUG - Taking top 8 variants by coverage in window 9:75545896-75545898
2012-10-07 17:56:52,873 - DEBUG - Taking top 8 variants by coverage in window 9:75554964-75554966
2012-10-07 17:56:52,928 - DEBUG - Taking top 8 variants by coverage in window 9:75555009-75555011
2012-10-07 17:56:53,169 - DEBUG - Taking top 8 variants by coverage in window 9:75556819-75556821
2012-10-07 17:56:53,238 - DEBUG - Taking top 8 variants by coverage in window 9:75563713-75563714
2012-10-07 17:56:53,294 - DEBUG - Taking top 8 variants by coverage in window 9:75563770-75563771
2012-10-07 17:56:53,308 - DEBUG - Taking top 8 variants by coverage in window 9:75563775-75563776
2012-10-07 17:56:54,043 - DEBUG - Taking top 8 variants by coverage in window 9:75578155-75578162
2012-10-07 17:56:54,277 - DEBUG - Taking top 8 variants by coverage in window 9:75586151-75586152
2012-10-07 17:56:55,311 - DEBUG - Taking top 8 variants by coverage in window 9:75602563-75602566
2012-10-07 17:56:55,325 - DEBUG - Taking top 8 variants by coverage in window 9:75602570-75602571
2012-10-07 17:56:56,087 - DEBUG - Taking top 8 variants by coverage in window 9:75610733-75610734
2012-10-07 17:56:56,665 - DEBUG - Taking top 8 variants by coverage in window 9:75619609-75619610
2012-10-07 17:56:57,455 - DEBUG - Taking top 8 variants by coverage in window 9:75636917-75636918
2012-10-07 17:56:58,498 - DEBUG - Taking top 8 variants by coverage in window 9:75653466-75653468
2012-10-07 17:56:58,654 - DEBUG - Taking top 8 variants by coverage in window 9:75655546-75655549
2012-10-07 17:56:58,724 - DEBUG - Taking top 8 variants by coverage in window 9:75655881-75655882
2012-10-07 17:56:58,852 - DEBUG - Taking top 8 variants by coverage in window 9:75658254-75658273
2012-10-07 17:56:59,062 - DEBUG - Taking top 8 variants by coverage in window 9:75661369-75661370
2012-10-07 17:57:01,705 - DEBUG - Taking top 8 variants by coverage in window 9:75691677-75691679
2012-10-07 17:57:01,999 - DEBUG - Taking top 8 variants by coverage in window 9:75697520-75697528
2012-10-07 17:57:02,438 - DEBUG - Taking top 8 variants by coverage in window 9:75703587-75703591
2012-10-07 17:57:03,540 - DEBUG - Taking top 8 variants by coverage in window 9:75716130-75716131
2012-10-07 17:57:04,013 - DEBUG - Taking top 8 variants by coverage in window 9:75724057-75724058
2012-10-07 17:57:04,138 - DEBUG - Taking top 8 variants by coverage in window 9:75725160-75725161
2012-10-07 17:57:04,376 - DEBUG - Taking top 8 variants by coverage in window 9:75728490-75728493
2012-10-07 17:57:04,543 - DEBUG - Taking top 8 variants by coverage in window 9:75729912-75729914
2012-10-07 17:57:04,654 - DEBUG - Taking top 8 variants by coverage in window 9:75732390-75732391
2012-10-07 17:57:05,954 - DEBUG - Taking top 8 variants by coverage in window 9:75752389-75752390
2012-10-07 17:57:05,976 - DEBUG - Taking top 8 variants by coverage in window 9:75752410-75752411
2012-10-07 17:57:06,229 - DEBUG - Taking top 8 variants by coverage in window 9:75757370-75757371
2012-10-07 17:57:06,244 - DEBUG - Taking top 8 variants by coverage in window 9:75757388-75757389
2012-10-07 17:57:08,074 - DEBUG - Taking top 8 variants by coverage in window 9:75791649-75791650
2012-10-07 17:57:08,456 - DEBUG - Taking top 8 variants by coverage in window 9:75796001-75796011
2012-10-07 17:57:08,676 - DEBUG - Taking top 8 variants by coverage in window 9:75799887-75799889
2012-10-07 17:57:08,838 - DEBUG - Taking top 8 variants by coverage in window 9:75802094-75802104
2012-10-07 17:57:08,901 - DEBUG - Taking top 8 variants by coverage in window 9:75802300-75802301
2012-10-07 17:57:09,198 - DEBUG - Taking top 8 variants by coverage in window 9:75803949-75803950
2012-10-07 17:57:09,264 - DEBUG - Taking top 8 variants by coverage in window 9:75804713-75804719
2012-10-07 17:57:11,073 - DEBUG - Taking top 8 variants by coverage in window 9:75820910-75820911
2012-10-07 17:57:11,122 - DEBUG - Taking top 8 variants by coverage in window 9:75827391-75827392
2012-10-07 17:57:11,806 - DEBUG - Taking top 8 variants by coverage in window 9:75838246-75838247
2012-10-07 17:57:11,915 - DEBUG - Taking top 8 variants by coverage in window 9:75839397-75839400
2012-10-07 17:57:11,940 - DEBUG - Taking top 8 variants by coverage in window 9:75839541-75839542
2012-10-07 17:57:12,215 - DEBUG - Taking top 8 variants by coverage in window 9:75841936-75841938
2012-10-07 17:57:12,282 - DEBUG - Taking top 8 variants by coverage in window 9:75841995-75841996
2012-10-07 17:57:12,701 - DEBUG - Taking top 8 variants by coverage in window 9:75849645-75849646
2012-10-07 17:57:12,878 - DEBUG - Taking top 8 variants by coverage in window 9:75853270-75853276
2012-10-07 17:57:13,086 - DEBUG - Taking top 8 variants by coverage in window 9:75855255-75855256
2012-10-07 17:57:13,208 - DEBUG - Taking top 8 variants by coverage in window 9:75857376-75857377
2012-10-07 17:57:13,766 - DEBUG - Taking top 8 variants by coverage in window 9:75864985-75864986
2012-10-07 17:57:13,891 - DEBUG - Taking top 8 variants by coverage in window 9:75867555-75867556
2012-10-07 17:57:15,460 - DEBUG - Taking top 8 variants by coverage in window 9:75894003-75894004
2012-10-07 17:57:15,710 - DEBUG - Taking top 8 variants by coverage in window 9:75896160-75896162
2012-10-07 17:57:15,974 - DEBUG - Taking top 8 variants by coverage in window 9:75899237-75899239
2012-10-07 17:57:16,551 - DEBUG - Taking top 8 variants by coverage in window 9:75907231-75907232
2012-10-07 17:57:16,852 - DEBUG - Taking top 8 variants by coverage in window 9:75911894-75911902
2012-10-07 17:57:17,600 - DEBUG - Taking top 8 variants by coverage in window 9:75924636-75924637
2012-10-07 17:57:18,163 - DEBUG - Taking top 8 variants by coverage in window 9:75932045-75932050
2012-10-07 17:57:18,329 - DEBUG - Taking top 8 variants by coverage in window 9:75934217-75934219
2012-10-07 17:57:19,824 - DEBUG - Taking top 8 variants by coverage in window 9:75959231-75959234
2012-10-07 17:57:20,224 - DEBUG - Taking top 8 variants by coverage in window 9:75964455-75964467
2012-10-07 17:57:20,636 - DEBUG - Taking top 8 variants by coverage in window 9:75969073-75969074
2012-10-07 17:57:21,845 - DEBUG - Taking top 8 variants by coverage in window 9:75988607-75988608
2012-10-07 17:57:23,292 - DEBUG - Read 82960 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 17:57:23,507 - DEBUG - Read 90398 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 17:57:23,740 - DEBUG - Read 107860 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 17:57:23,989 - DEBUG - Read 104713 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 17:57:24,234 - DEBUG - Read 102772 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 17:57:24,458 - DEBUG - Read 97046 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 17:57:24,691 - DEBUG - Read 103986 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 17:57:24,905 - DEBUG - Read 88056 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 17:57:25,109 - DEBUG - Read 85296 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 17:57:25,327 - DEBUG - Read 91038 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 17:57:25,556 - DEBUG - Read 99137 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 17:57:25,753 - DEBUG - Read 85625 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 17:57:25,961 - DEBUG - Read 87590 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 17:57:26,175 - DEBUG - Read 96715 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 17:57:26,414 - DEBUG - Read 106047 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 17:57:26,607 - DEBUG - Read 79238 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 17:57:26,830 - DEBUG - Read 102155 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 17:57:27,063 - DEBUG - Read 99461 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 17:57:27,248 - DEBUG - Read 78745 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 17:57:27,456 - DEBUG - Read 85357 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 17:57:27,542 - DEBUG - Detected 18492 variants in 82960 reads
2012-10-07 17:57:27,674 - DEBUG - Detected 26226 variants in 90398 reads
2012-10-07 17:57:27,862 - DEBUG - Detected 33952 variants in 107860 reads
2012-10-07 17:57:28,063 - DEBUG - Detected 41733 variants in 104713 reads
2012-10-07 17:57:28,292 - DEBUG - Detected 47084 variants in 102772 reads
2012-10-07 17:57:28,542 - DEBUG - Detected 51821 variants in 97046 reads
2012-10-07 17:57:28,826 - DEBUG - Detected 64514 variants in 103986 reads
2012-10-07 17:57:29,146 - DEBUG - Detected 68686 variants in 88056 reads
2012-10-07 17:57:29,487 - DEBUG - Detected 73147 variants in 85296 reads
2012-10-07 17:57:29,852 - DEBUG - Detected 77019 variants in 91038 reads
2012-10-07 17:57:30,268 - DEBUG - Detected 80968 variants in 99137 reads
2012-10-07 17:57:30,658 - DEBUG - Detected 84401 variants in 85625 reads
2012-10-07 17:57:31,061 - DEBUG - Detected 88193 variants in 87590 reads
2012-10-07 17:57:31,494 - DEBUG - Detected 91522 variants in 96715 reads
2012-10-07 17:57:31,951 - DEBUG - Detected 97940 variants in 106047 reads
2012-10-07 17:57:32,398 - DEBUG - Detected 100996 variants in 79238 reads
2012-10-07 17:57:32,895 - DEBUG - Detected 104076 variants in 102155 reads
2012-10-07 17:57:33,454 - DEBUG - Detected 107947 variants in 99461 reads
2012-10-07 17:57:33,961 - DEBUG - Detected 111039 variants in 78745 reads
2012-10-07 17:57:34,490 - DEBUG - Detected 114745 variants in 85357 reads
2012-10-07 17:57:36,195 - DEBUG - Taking top 8 variants by coverage in window 9:76019325-76019326
2012-10-07 17:57:36,365 - DEBUG - Taking top 8 variants by coverage in window 9:76022075-76022078
2012-10-07 17:57:36,598 - DEBUG - Taking top 8 variants by coverage in window 9:76025455-76025462
2012-10-07 17:57:36,657 - DEBUG - Taking top 8 variants by coverage in window 9:76025849-76025850
2012-10-07 17:57:36,819 - DEBUG - Taking top 8 variants by coverage in window 9:76028526-76028527
2012-10-07 17:57:36,840 - DEBUG - Taking top 8 variants by coverage in window 9:76028539-76028540
2012-10-07 17:57:37,120 - DEBUG - Taking top 8 variants by coverage in window 9:76037583-76037584
2012-10-07 17:57:38,442 - DEBUG - Taking top 8 variants by coverage in window 9:76052547-76052548
2012-10-07 17:57:38,517 - DEBUG - Taking top 8 variants by coverage in window 9:76054625-76054631
2012-10-07 17:57:39,496 - DEBUG - Taking top 8 variants by coverage in window 9:76073423-76073424
2012-10-07 17:57:39,979 - DEBUG - Taking top 8 variants by coverage in window 9:76086430-76086432
2012-10-07 17:57:40,025 - DEBUG - Taking top 8 variants by coverage in window 9:76086435-76086436
2012-10-07 17:57:40,228 - DEBUG - Taking top 8 variants by coverage in window 9:76087497-76087498
2012-10-07 17:57:40,254 - DEBUG - Taking top 8 variants by coverage in window 9:76087505-76087506
2012-10-07 17:57:40,293 - DEBUG - Taking top 8 variants by coverage in window 9:76087511-76087512
2012-10-07 17:57:40,872 - DEBUG - Taking top 8 variants by coverage in window 9:76096778-76096779
2012-10-07 17:57:41,016 - DEBUG - Taking top 8 variants by coverage in window 9:76099646-76099647
2012-10-07 17:57:41,338 - DEBUG - Taking top 8 variants by coverage in window 9:76104974-76104976
2012-10-07 17:57:41,742 - DEBUG - Taking top 8 variants by coverage in window 9:76109612-76109613
2012-10-07 17:57:42,802 - DEBUG - Taking top 8 variants by coverage in window 9:76123736-76123737
2012-10-07 17:57:42,866 - DEBUG - Taking top 8 variants by coverage in window 9:76124322-76124332
2012-10-07 17:57:43,312 - DEBUG - Taking top 8 variants by coverage in window 9:76133672-76133674
2012-10-07 17:57:43,506 - DEBUG - Taking top 8 variants by coverage in window 9:76138590-76138591
2012-10-07 17:57:44,406 - DEBUG - Taking top 8 variants by coverage in window 9:76152174-76152175
2012-10-07 17:57:45,254 - DEBUG - Taking top 8 variants by coverage in window 9:76162290-76162291
2012-10-07 17:57:47,013 - DEBUG - Taking top 8 variants by coverage in window 9:76190786-76190788
2012-10-07 17:57:48,346 - DEBUG - Taking top 8 variants by coverage in window 9:76207238-76207239
2012-10-07 17:57:48,934 - DEBUG - Taking top 8 variants by coverage in window 9:76215127-76215128
2012-10-07 17:57:49,079 - DEBUG - Taking top 8 variants by coverage in window 9:76217645-76217646
2012-10-07 17:57:49,298 - DEBUG - Taking top 8 variants by coverage in window 9:76219466-76219467
2012-10-07 17:57:49,310 - DEBUG - Taking top 8 variants by coverage in window 9:76219481-76219482
2012-10-07 17:57:50,605 - DEBUG - Taking top 8 variants by coverage in window 9:76245348-76245349
2012-10-07 17:57:50,930 - DEBUG - Taking top 8 variants by coverage in window 9:76252374-76252379
2012-10-07 17:57:51,034 - DEBUG - Taking top 8 variants by coverage in window 9:76252430-76252431
2012-10-07 17:57:52,580 - DEBUG - Taking top 8 variants by coverage in window 9:76280795-76280796
2012-10-07 17:57:53,341 - DEBUG - Taking top 8 variants by coverage in window 9:76292837-76292839
2012-10-07 17:57:54,672 - DEBUG - Taking top 8 variants by coverage in window 9:76303390-76303391
2012-10-07 17:57:55,753 - DEBUG - Taking top 8 variants by coverage in window 9:76315852-76315853
2012-10-07 17:57:56,582 - DEBUG - Taking top 8 variants by coverage in window 9:76332180-76332181
2012-10-07 17:57:57,998 - DEBUG - Taking top 8 variants by coverage in window 9:76357588-76357589
2012-10-07 17:57:59,017 - DEBUG - Taking top 8 variants by coverage in window 9:76369554-76369555
2012-10-07 17:57:59,032 - DEBUG - Taking top 8 variants by coverage in window 9:76369555-76369556
2012-10-07 17:57:59,915 - DEBUG - Taking top 8 variants by coverage in window 9:76378237-76378238
2012-10-07 17:58:00,323 - DEBUG - Taking top 8 variants by coverage in window 9:76383491-76383495
2012-10-07 17:58:01,044 - DEBUG - Taking top 8 variants by coverage in window 9:76387778-76387781
2012-10-07 17:58:02,137 - DEBUG - Taking top 8 variants by coverage in window 9:76403634-76403648
2012-10-07 17:58:03,495 - DEBUG - Taking top 8 variants by coverage in window 9:76412157-76412159
2012-10-07 17:58:03,550 - DEBUG - Taking top 8 variants by coverage in window 9:76412162-76412166
2012-10-07 17:58:03,657 - DEBUG - Taking top 8 variants by coverage in window 9:76412170-76412173
2012-10-07 17:58:03,681 - DEBUG - Taking top 8 variants by coverage in window 9:76412174-76412182
2012-10-07 17:58:03,731 - DEBUG - Taking top 8 variants by coverage in window 9:76412183-76412187
2012-10-07 17:58:05,067 - DEBUG - Taking top 8 variants by coverage in window 9:76426010-76426011
2012-10-07 17:58:05,747 - DEBUG - Taking top 8 variants by coverage in window 9:76437761-76437777
2012-10-07 17:58:05,947 - DEBUG - Taking top 8 variants by coverage in window 9:76439194-76439195
2012-10-07 17:58:06,203 - DEBUG - Taking top 8 variants by coverage in window 9:76442764-76442765
2012-10-07 17:58:06,827 - DEBUG - Taking top 8 variants by coverage in window 9:76455222-76455223
2012-10-07 17:58:07,327 - DEBUG - Taking top 8 variants by coverage in window 9:76459465-76459466
2012-10-07 17:58:07,372 - DEBUG - Taking top 8 variants by coverage in window 9:76459609-76459619
2012-10-07 17:58:07,993 - DEBUG - Taking top 8 variants by coverage in window 9:76467159-76467164
2012-10-07 17:58:09,746 - DEBUG - Taking top 8 variants by coverage in window 9:76493239-76493240
2012-10-07 17:58:11,320 - DEBUG - Taking top 8 variants by coverage in window 9:76523167-76523168
2012-10-07 17:58:11,342 - DEBUG - Taking top 8 variants by coverage in window 9:76523343-76523344
2012-10-07 17:58:11,730 - DEBUG - Taking top 8 variants by coverage in window 9:76527697-76527698
2012-10-07 17:58:11,792 - DEBUG - Taking top 8 variants by coverage in window 9:76527722-76527723
2012-10-07 17:58:11,805 - DEBUG - Taking top 8 variants by coverage in window 9:76527723-76527724
2012-10-07 17:58:12,965 - DEBUG - Taking top 8 variants by coverage in window 9:76542307-76542308
2012-10-07 17:58:12,978 - DEBUG - Taking top 8 variants by coverage in window 9:76542319-76542320
2012-10-07 17:58:13,054 - DEBUG - Taking top 8 variants by coverage in window 9:76543204-76543207
2012-10-07 17:58:13,192 - DEBUG - Taking top 8 variants by coverage in window 9:76545064-76545065
2012-10-07 17:58:13,684 - DEBUG - Taking top 8 variants by coverage in window 9:76553667-76553668
2012-10-07 17:58:13,772 - DEBUG - Taking top 8 variants by coverage in window 9:76554926-76554928
2012-10-07 17:58:14,192 - DEBUG - Taking top 8 variants by coverage in window 9:76562527-76562528
2012-10-07 17:58:14,850 - DEBUG - Taking top 8 variants by coverage in window 9:76575226-76575227
2012-10-07 17:58:15,195 - DEBUG - Taking top 8 variants by coverage in window 9:76587067-76587074
2012-10-07 17:58:15,204 - DEBUG - Taking top 8 variants by coverage in window 9:76587082-76587083
2012-10-07 17:58:16,516 - DEBUG - Taking top 8 variants by coverage in window 9:76615515-76615516
2012-10-07 17:58:16,956 - DEBUG - Taking top 8 variants by coverage in window 9:76623322-76623323
2012-10-07 17:58:17,339 - DEBUG - Taking top 8 variants by coverage in window 9:76628979-76628980
2012-10-07 17:58:17,582 - DEBUG - Taking top 8 variants by coverage in window 9:76635519-76635524
2012-10-07 17:58:18,184 - DEBUG - Taking top 8 variants by coverage in window 9:76669565-76669566
2012-10-07 17:58:18,442 - DEBUG - Taking top 8 variants by coverage in window 9:76671885-76671886
2012-10-07 17:58:18,465 - DEBUG - Taking top 8 variants by coverage in window 9:76671888-76671889
2012-10-07 17:58:19,678 - DEBUG - Taking top 8 variants by coverage in window 9:76704664-76704665
2012-10-07 17:58:20,422 - DEBUG - Taking top 8 variants by coverage in window 9:76721222-76721223
2012-10-07 17:58:20,543 - DEBUG - Taking top 8 variants by coverage in window 9:76723383-76723384
2012-10-07 17:58:20,670 - DEBUG - Taking top 8 variants by coverage in window 9:76723862-76723863
2012-10-07 17:58:20,757 - DEBUG - Taking top 8 variants by coverage in window 9:76725698-76725699
2012-10-07 17:58:20,767 - DEBUG - Taking top 8 variants by coverage in window 9:76725702-76725703
2012-10-07 17:58:22,153 - DEBUG - Taking top 8 variants by coverage in window 9:76779433-76779434
2012-10-07 17:58:22,345 - DEBUG - Taking top 8 variants by coverage in window 9:76781391-76781392
2012-10-07 17:58:24,965 - DEBUG - Taking top 8 variants by coverage in window 9:76821612-76821613
2012-10-07 17:58:25,682 - DEBUG - Taking top 8 variants by coverage in window 9:76829342-76829343
2012-10-07 17:58:25,713 - DEBUG - Taking top 8 variants by coverage in window 9:76829344-76829345
2012-10-07 17:58:25,932 - DEBUG - Taking top 8 variants by coverage in window 9:76831385-76831386
2012-10-07 17:58:25,966 - DEBUG - Taking top 8 variants by coverage in window 9:76831511-76831512
2012-10-07 17:58:26,021 - DEBUG - Taking top 8 variants by coverage in window 9:76831849-76831850
2012-10-07 17:58:26,039 - DEBUG - Taking top 8 variants by coverage in window 9:76831866-76831867
2012-10-07 17:58:26,511 - DEBUG - Taking top 8 variants by coverage in window 9:76836885-76836886
2012-10-07 17:58:26,578 - DEBUG - Taking top 8 variants by coverage in window 9:76837251-76837253
2012-10-07 17:58:26,590 - DEBUG - Taking top 8 variants by coverage in window 9:76837255-76837258
2012-10-07 17:58:26,948 - DEBUG - Taking top 8 variants by coverage in window 9:76842351-76842352
2012-10-07 17:58:26,963 - DEBUG - Taking top 8 variants by coverage in window 9:76842370-76842371
2012-10-07 17:58:27,309 - DEBUG - Taking top 8 variants by coverage in window 9:76846792-76846801
2012-10-07 17:58:27,467 - DEBUG - Taking top 8 variants by coverage in window 9:76846815-76846816
2012-10-07 17:58:28,405 - DEBUG - Taking top 8 variants by coverage in window 9:76865549-76865550
2012-10-07 17:58:28,625 - DEBUG - Taking top 8 variants by coverage in window 9:76868179-76868180
2012-10-07 17:58:28,849 - DEBUG - Taking top 8 variants by coverage in window 9:76872621-76872622
2012-10-07 17:58:28,986 - DEBUG - Taking top 8 variants by coverage in window 9:76876467-76876468
2012-10-07 17:58:30,896 - DEBUG - Taking top 8 variants by coverage in window 9:76917832-76917833
2012-10-07 17:58:31,073 - DEBUG - Taking top 8 variants by coverage in window 9:76920162-76920163
2012-10-07 17:58:31,856 - DEBUG - Taking top 8 variants by coverage in window 9:76937722-76937724
2012-10-07 17:58:32,334 - DEBUG - Taking top 8 variants by coverage in window 9:76939167-76939168
2012-10-07 17:58:32,718 - DEBUG - Taking top 8 variants by coverage in window 9:76948871-76948872
2012-10-07 17:58:34,610 - DEBUG - Taking top 8 variants by coverage in window 9:76982244-76982245
2012-10-07 17:58:35,962 - DEBUG - Read 98150 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 17:58:36,213 - DEBUG - Read 106104 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 17:58:36,480 - DEBUG - Read 123676 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 17:58:36,778 - DEBUG - Read 124072 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 17:58:37,061 - DEBUG - Read 116218 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 17:58:37,315 - DEBUG - Read 110638 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 17:58:37,578 - DEBUG - Read 117364 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 17:58:37,838 - DEBUG - Read 107321 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 17:58:38,078 - DEBUG - Read 101838 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 17:58:38,325 - DEBUG - Read 101310 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 17:58:38,591 - DEBUG - Read 113231 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 17:58:38,826 - DEBUG - Read 101765 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 17:58:39,071 - DEBUG - Read 102412 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 17:58:39,323 - DEBUG - Read 115272 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 17:58:39,594 - DEBUG - Read 122699 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 17:58:39,822 - DEBUG - Read 93212 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 17:58:40,076 - DEBUG - Read 116934 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 17:58:40,340 - DEBUG - Read 112070 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 17:58:40,565 - DEBUG - Read 98142 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 17:58:40,807 - DEBUG - Read 97624 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 17:58:40,917 - DEBUG - Detected 24705 variants in 98150 reads
2012-10-07 17:58:41,096 - DEBUG - Detected 33288 variants in 106104 reads
2012-10-07 17:58:41,326 - DEBUG - Detected 42552 variants in 123676 reads
2012-10-07 17:58:41,613 - DEBUG - Detected 52179 variants in 124072 reads
2012-10-07 17:58:41,916 - DEBUG - Detected 58833 variants in 116218 reads
2012-10-07 17:58:42,246 - DEBUG - Detected 65590 variants in 110638 reads
2012-10-07 17:58:42,622 - DEBUG - Detected 79313 variants in 117364 reads
2012-10-07 17:58:43,047 - DEBUG - Detected 84875 variants in 107321 reads
2012-10-07 17:58:43,498 - DEBUG - Detected 91280 variants in 101838 reads
2012-10-07 17:58:44,022 - DEBUG - Detected 95945 variants in 101310 reads
2012-10-07 17:58:44,534 - DEBUG - Detected 102322 variants in 113231 reads
2012-10-07 17:58:45,068 - DEBUG - Detected 106904 variants in 101765 reads
2012-10-07 17:58:45,619 - DEBUG - Detected 111625 variants in 102412 reads
2012-10-07 17:58:46,209 - DEBUG - Detected 116573 variants in 115272 reads
2012-10-07 17:58:46,877 - DEBUG - Detected 124260 variants in 122699 reads
2012-10-07 17:58:47,506 - DEBUG - Detected 128806 variants in 93212 reads
2012-10-07 17:58:48,175 - DEBUG - Detected 132655 variants in 116934 reads
2012-10-07 17:58:48,867 - DEBUG - Detected 137610 variants in 112070 reads
2012-10-07 17:58:49,564 - DEBUG - Detected 142183 variants in 98142 reads
2012-10-07 17:58:50,351 - DEBUG - Detected 146806 variants in 97624 reads
2012-10-07 17:58:52,409 - DEBUG - Taking top 8 variants by coverage in window 9:77029113-77029115
2012-10-07 17:58:52,634 - DEBUG - Taking top 8 variants by coverage in window 9:77033004-77033005
2012-10-07 17:58:52,641 - DEBUG - Taking top 8 variants by coverage in window 9:77033122-77033123
2012-10-07 17:58:52,652 - DEBUG - Taking top 8 variants by coverage in window 9:77033125-77033126
2012-10-07 17:58:54,243 - DEBUG - Taking top 8 variants by coverage in window 9:77066431-77066435
2012-10-07 17:58:54,471 - DEBUG - Taking top 8 variants by coverage in window 9:77067293-77067294
2012-10-07 17:58:54,482 - DEBUG - Taking top 8 variants by coverage in window 9:77067334-77067335
2012-10-07 17:58:55,750 - DEBUG - Taking top 8 variants by coverage in window 9:77085991-77085992
2012-10-07 17:58:56,555 - DEBUG - Taking top 8 variants by coverage in window 9:77105995-77105996
2012-10-07 17:58:58,108 - DEBUG - Taking top 8 variants by coverage in window 9:77131624-77131625
2012-10-07 17:58:58,117 - DEBUG - Taking top 8 variants by coverage in window 9:77131633-77131637
2012-10-07 17:58:58,142 - DEBUG - Taking top 8 variants by coverage in window 9:77132715-77132722
2012-10-07 17:58:58,298 - DEBUG - Taking top 8 variants by coverage in window 9:77133726-77133727
2012-10-07 17:58:59,847 - DEBUG - Taking top 8 variants by coverage in window 9:77153145-77153146
2012-10-07 17:59:00,390 - DEBUG - Taking top 8 variants by coverage in window 9:77158357-77158358
2012-10-07 17:59:01,759 - DEBUG - Taking top 8 variants by coverage in window 9:77177688-77177689
2012-10-07 17:59:01,803 - DEBUG - Taking top 8 variants by coverage in window 9:77177706-77177712
2012-10-07 17:59:02,039 - DEBUG - Taking top 8 variants by coverage in window 9:77179651-77179652
2012-10-07 17:59:02,138 - DEBUG - Taking top 8 variants by coverage in window 9:77182221-77182222
2012-10-07 17:59:02,538 - DEBUG - Taking top 8 variants by coverage in window 9:77186858-77186859
2012-10-07 17:59:02,826 - DEBUG - Taking top 8 variants by coverage in window 9:77190042-77190043
2012-10-07 17:59:03,278 - DEBUG - Taking top 8 variants by coverage in window 9:77197719-77197724
2012-10-07 17:59:03,312 - DEBUG - Taking top 8 variants by coverage in window 9:77198034-77198050
2012-10-07 17:59:03,320 - DEBUG - Taking top 8 variants by coverage in window 9:77198056-77198057
2012-10-07 17:59:03,326 - DEBUG - Taking top 8 variants by coverage in window 9:77198060-77198061
2012-10-07 17:59:05,359 - DEBUG - Taking top 8 variants by coverage in window 9:77219305-77219315
2012-10-07 17:59:05,830 - DEBUG - Taking top 8 variants by coverage in window 9:77223050-77223054
2012-10-07 17:59:05,879 - DEBUG - Taking top 8 variants by coverage in window 9:77223159-77223163
2012-10-07 17:59:06,305 - DEBUG - Taking top 8 variants by coverage in window 9:77228492-77228498
2012-10-07 17:59:06,397 - DEBUG - Taking top 8 variants by coverage in window 9:77229200-77229201
2012-10-07 17:59:06,515 - DEBUG - Taking top 8 variants by coverage in window 9:77229974-77229975
2012-10-07 17:59:06,718 - DEBUG - Taking top 8 variants by coverage in window 9:77232312-77232313
2012-10-07 17:59:07,342 - DEBUG - Taking top 8 variants by coverage in window 9:77239076-77239077
2012-10-07 17:59:07,533 - DEBUG - Taking top 8 variants by coverage in window 9:77240027-77240028
2012-10-07 17:59:07,744 - DEBUG - Taking top 8 variants by coverage in window 9:77241462-77241464
2012-10-07 17:59:07,771 - DEBUG - Taking top 8 variants by coverage in window 9:77241510-77241511
2012-10-07 17:59:08,119 - DEBUG - Taking top 8 variants by coverage in window 9:77243378-77243390
2012-10-07 17:59:10,885 - DEBUG - Taking top 8 variants by coverage in window 9:77249686-77249687
2012-10-07 17:59:11,368 - DEBUG - Taking top 8 variants by coverage in window 9:77255710-77255711
2012-10-07 17:59:11,507 - DEBUG - Taking top 8 variants by coverage in window 9:77256511-77256512
2012-10-07 17:59:11,779 - DEBUG - Taking top 8 variants by coverage in window 9:77259079-77259080
2012-10-07 17:59:12,602 - DEBUG - Taking top 8 variants by coverage in window 9:77265186-77265192
2012-10-07 17:59:12,777 - DEBUG - Taking top 8 variants by coverage in window 9:77266220-77266221
2012-10-07 17:59:12,801 - DEBUG - Taking top 8 variants by coverage in window 9:77266228-77266229
2012-10-07 17:59:13,005 - DEBUG - Taking top 8 variants by coverage in window 9:77266274-77266276
2012-10-07 17:59:13,466 - DEBUG - Taking top 8 variants by coverage in window 9:77268996-77268997
2012-10-07 17:59:13,521 - DEBUG - Taking top 8 variants by coverage in window 9:77269086-77269087
2012-10-07 17:59:13,848 - DEBUG - Taking top 8 variants by coverage in window 9:77272201-77272202
2012-10-07 17:59:14,383 - DEBUG - Taking top 8 variants by coverage in window 9:77280822-77280823
2012-10-07 17:59:14,880 - DEBUG - Taking top 8 variants by coverage in window 9:77286992-77286993
2012-10-07 17:59:15,505 - DEBUG - Taking top 8 variants by coverage in window 9:77289968-77289969
2012-10-07 17:59:15,925 - DEBUG - Taking top 8 variants by coverage in window 9:77294334-77294336
2012-10-07 17:59:15,954 - DEBUG - Taking top 8 variants by coverage in window 9:77294346-77294348
2012-10-07 17:59:17,020 - DEBUG - Taking top 8 variants by coverage in window 9:77305432-77305433
2012-10-07 17:59:17,247 - DEBUG - Taking top 8 variants by coverage in window 9:77307834-77307835
2012-10-07 17:59:17,413 - DEBUG - Taking top 8 variants by coverage in window 9:77308883-77308893
2012-10-07 17:59:18,071 - DEBUG - Taking top 8 variants by coverage in window 9:77313332-77313338
2012-10-07 17:59:18,492 - DEBUG - Taking top 8 variants by coverage in window 9:77316037-77316043
2012-10-07 17:59:18,632 - DEBUG - Taking top 8 variants by coverage in window 9:77316537-77316538
2012-10-07 17:59:18,743 - DEBUG - Taking top 8 variants by coverage in window 9:77317342-77317346
2012-10-07 17:59:18,972 - DEBUG - Taking top 8 variants by coverage in window 9:77319515-77319521
2012-10-07 17:59:18,982 - DEBUG - Taking top 8 variants by coverage in window 9:77319551-77319552
2012-10-07 17:59:19,660 - DEBUG - Taking top 8 variants by coverage in window 9:77327198-77327199
2012-10-07 17:59:19,822 - DEBUG - Taking top 8 variants by coverage in window 9:77327588-77327589
2012-10-07 17:59:19,850 - DEBUG - Taking top 8 variants by coverage in window 9:77327591-77327592
2012-10-07 17:59:21,316 - DEBUG - Taking top 8 variants by coverage in window 9:77340354-77340355
2012-10-07 17:59:22,098 - DEBUG - Taking top 8 variants by coverage in window 9:77348263-77348276
2012-10-07 17:59:22,735 - DEBUG - Taking top 8 variants by coverage in window 9:77355309-77355310
2012-10-07 17:59:22,788 - DEBUG - Taking top 8 variants by coverage in window 9:77355769-77355770
2012-10-07 17:59:22,797 - DEBUG - Taking top 8 variants by coverage in window 9:77355772-77355773
2012-10-07 17:59:22,835 - DEBUG - Taking top 8 variants by coverage in window 9:77355786-77355787
2012-10-07 17:59:23,553 - DEBUG - Taking top 8 variants by coverage in window 9:77364976-77364977
2012-10-07 17:59:23,564 - DEBUG - Taking top 8 variants by coverage in window 9:77364980-77364982
2012-10-07 17:59:23,911 - DEBUG - Taking top 8 variants by coverage in window 9:77367163-77367164
2012-10-07 17:59:24,102 - DEBUG - Taking top 8 variants by coverage in window 9:77369946-77369947
2012-10-07 17:59:25,426 - DEBUG - Taking top 8 variants by coverage in window 9:77386282-77386283
2012-10-07 17:59:25,450 - DEBUG - Taking top 8 variants by coverage in window 9:77386656-77386659
2012-10-07 17:59:26,276 - DEBUG - Taking top 8 variants by coverage in window 9:77398520-77398535
2012-10-07 17:59:26,558 - DEBUG - Taking top 8 variants by coverage in window 9:77400588-77400589
2012-10-07 17:59:28,319 - DEBUG - Taking top 8 variants by coverage in window 9:77416051-77416052
2012-10-07 17:59:28,438 - DEBUG - Taking top 8 variants by coverage in window 9:77417138-77417139
2012-10-07 17:59:28,473 - DEBUG - Taking top 8 variants by coverage in window 9:77417186-77417187
2012-10-07 17:59:28,607 - DEBUG - Taking top 8 variants by coverage in window 9:77418493-77418494
2012-10-07 17:59:28,750 - DEBUG - Taking top 8 variants by coverage in window 9:77420465-77420471
2012-10-07 17:59:28,918 - DEBUG - Taking top 8 variants by coverage in window 9:77422353-77422354
2012-10-07 17:59:29,137 - DEBUG - Taking top 8 variants by coverage in window 9:77423484-77423503
2012-10-07 17:59:29,323 - DEBUG - Taking top 8 variants by coverage in window 9:77425030-77425031
2012-10-07 17:59:29,413 - DEBUG - Taking top 8 variants by coverage in window 9:77425545-77425546
2012-10-07 17:59:31,332 - DEBUG - Taking top 8 variants by coverage in window 9:77454924-77454941
2012-10-07 17:59:31,340 - DEBUG - Taking top 8 variants by coverage in window 9:77454942-77454943
2012-10-07 17:59:31,349 - DEBUG - Taking top 8 variants by coverage in window 9:77454945-77454946
2012-10-07 17:59:31,617 - DEBUG - Taking top 8 variants by coverage in window 9:77456795-77456799
2012-10-07 17:59:31,645 - DEBUG - Taking top 8 variants by coverage in window 9:77457495-77457496
2012-10-07 17:59:32,150 - DEBUG - Taking top 8 variants by coverage in window 9:77462626-77462627
2012-10-07 17:59:32,202 - DEBUG - Taking top 8 variants by coverage in window 9:77463003-77463004
2012-10-07 17:59:33,129 - DEBUG - Taking top 8 variants by coverage in window 9:77474011-77474012
2012-10-07 17:59:33,736 - DEBUG - Taking top 8 variants by coverage in window 9:77482238-77482239
2012-10-07 17:59:33,755 - DEBUG - Taking top 8 variants by coverage in window 9:77482241-77482242
2012-10-07 17:59:33,838 - DEBUG - Taking top 8 variants by coverage in window 9:77482490-77482491
2012-10-07 17:59:35,291 - DEBUG - Taking top 8 variants by coverage in window 9:77499097-77499098
2012-10-07 17:59:35,338 - DEBUG - Taking top 8 variants by coverage in window 9:77499117-77499118
2012-10-07 17:59:35,419 - DEBUG - Taking top 8 variants by coverage in window 9:77499190-77499191
2012-10-07 17:59:35,493 - DEBUG - Taking top 8 variants by coverage in window 9:77499490-77499491
2012-10-07 17:59:35,652 - DEBUG - Taking top 8 variants by coverage in window 9:77500445-77500446
2012-10-07 17:59:39,504 - DEBUG - Taking top 8 variants by coverage in window 9:77512154-77512171
2012-10-07 17:59:39,643 - DEBUG - Taking top 8 variants by coverage in window 9:77513936-77513937
2012-10-07 17:59:39,754 - DEBUG - Taking top 8 variants by coverage in window 9:77515109-77515110
2012-10-07 17:59:40,351 - DEBUG - Taking top 8 variants by coverage in window 9:77520931-77520932
2012-10-07 17:59:40,485 - DEBUG - Taking top 8 variants by coverage in window 9:77528849-77528850
2012-10-07 17:59:41,401 - DEBUG - Taking top 8 variants by coverage in window 9:77542466-77542467
2012-10-07 17:59:41,582 - DEBUG - Taking top 8 variants by coverage in window 9:77546034-77546035
2012-10-07 17:59:41,598 - DEBUG - Taking top 8 variants by coverage in window 9:77546047-77546048
2012-10-07 17:59:41,877 - DEBUG - Taking top 8 variants by coverage in window 9:77547520-77547521
2012-10-07 17:59:42,140 - DEBUG - Taking top 8 variants by coverage in window 9:77550188-77550199
2012-10-07 17:59:42,227 - DEBUG - Taking top 8 variants by coverage in window 9:77550259-77550260
2012-10-07 17:59:43,598 - DEBUG - Taking top 8 variants by coverage in window 9:77571653-77571654
2012-10-07 17:59:44,858 - DEBUG - Taking top 8 variants by coverage in window 9:77588827-77588828
2012-10-07 17:59:44,928 - DEBUG - Taking top 8 variants by coverage in window 9:77589587-77589588
2012-10-07 17:59:45,052 - DEBUG - Taking top 8 variants by coverage in window 9:77590718-77590719
2012-10-07 17:59:45,075 - DEBUG - Taking top 8 variants by coverage in window 9:77590719-77590720
2012-10-07 17:59:45,147 - DEBUG - Taking top 8 variants by coverage in window 9:77590803-77590804
2012-10-07 17:59:45,165 - DEBUG - Taking top 8 variants by coverage in window 9:77590805-77590806
2012-10-07 17:59:45,268 - DEBUG - Taking top 8 variants by coverage in window 9:77590908-77590909
2012-10-07 17:59:45,314 - DEBUG - Taking top 8 variants by coverage in window 9:77590937-77590938
2012-10-07 17:59:45,509 - DEBUG - Taking top 8 variants by coverage in window 9:77593989-77593997
2012-10-07 17:59:46,435 - DEBUG - Taking top 8 variants by coverage in window 9:77606345-77606351
2012-10-07 17:59:47,205 - DEBUG - Taking top 8 variants by coverage in window 9:77616517-77616518
2012-10-07 17:59:47,874 - DEBUG - Taking top 8 variants by coverage in window 9:77626443-77626444
2012-10-07 17:59:47,976 - DEBUG - Taking top 8 variants by coverage in window 9:77627947-77627948
2012-10-07 17:59:48,510 - DEBUG - Taking top 8 variants by coverage in window 9:77644063-77644065
2012-10-07 17:59:48,541 - DEBUG - Taking top 8 variants by coverage in window 9:77644081-77644082
2012-10-07 17:59:49,327 - DEBUG - Taking top 8 variants by coverage in window 9:77653749-77653753
2012-10-07 17:59:49,512 - DEBUG - Taking top 8 variants by coverage in window 9:77655398-77655401
2012-10-07 17:59:49,686 - DEBUG - Taking top 8 variants by coverage in window 9:77656313-77656315
2012-10-07 17:59:50,135 - DEBUG - Taking top 8 variants by coverage in window 9:77659818-77659819
2012-10-07 17:59:50,786 - DEBUG - Taking top 8 variants by coverage in window 9:77665771-77665772
2012-10-07 17:59:51,058 - DEBUG - Taking top 8 variants by coverage in window 9:77667979-77667981
2012-10-07 17:59:52,186 - DEBUG - Taking top 8 variants by coverage in window 9:77683084-77683085
2012-10-07 17:59:52,519 - DEBUG - Taking top 8 variants by coverage in window 9:77686814-77686815
2012-10-07 17:59:52,683 - DEBUG - Taking top 8 variants by coverage in window 9:77687994-77687995
2012-10-07 17:59:52,890 - DEBUG - Taking top 8 variants by coverage in window 9:77690627-77690637
2012-10-07 17:59:52,913 - DEBUG - Taking top 8 variants by coverage in window 9:77690648-77690649
2012-10-07 17:59:53,079 - DEBUG - Taking top 8 variants by coverage in window 9:77694178-77694179
2012-10-07 17:59:53,475 - DEBUG - Taking top 8 variants by coverage in window 9:77700363-77700364
2012-10-07 17:59:53,942 - DEBUG - Taking top 8 variants by coverage in window 9:77704447-77704448
2012-10-07 17:59:55,601 - DEBUG - Taking top 8 variants by coverage in window 9:77735178-77735179
2012-10-07 17:59:55,943 - DEBUG - Taking top 8 variants by coverage in window 9:77740273-77740274
2012-10-07 17:59:56,042 - DEBUG - Taking top 8 variants by coverage in window 9:77741117-77741118
2012-10-07 17:59:56,235 - DEBUG - Taking top 8 variants by coverage in window 9:77742691-77742692
2012-10-07 17:59:56,334 - DEBUG - Taking top 8 variants by coverage in window 9:77743969-77743971
2012-10-07 17:59:56,610 - DEBUG - Taking top 8 variants by coverage in window 9:77746938-77746941
2012-10-07 17:59:57,836 - DEBUG - Taking top 8 variants by coverage in window 9:77754030-77754031
2012-10-07 17:59:58,564 - DEBUG - Taking top 8 variants by coverage in window 9:77759692-77759693
2012-10-07 17:59:59,473 - DEBUG - Taking top 8 variants by coverage in window 9:77776313-77776321
2012-10-07 18:00:00,483 - DEBUG - Taking top 8 variants by coverage in window 9:77789295-77789296
2012-10-07 18:00:00,971 - DEBUG - Taking top 8 variants by coverage in window 9:77797831-77797832
2012-10-07 18:00:02,417 - DEBUG - Taking top 8 variants by coverage in window 9:77817934-77817935
2012-10-07 18:00:02,975 - DEBUG - Taking top 8 variants by coverage in window 9:77824219-77824238
2012-10-07 18:00:03,073 - DEBUG - Taking top 8 variants by coverage in window 9:77825521-77825522
2012-10-07 18:00:04,887 - DEBUG - Taking top 8 variants by coverage in window 9:77850668-77850669
2012-10-07 18:00:05,513 - DEBUG - Taking top 8 variants by coverage in window 9:77855034-77855035
2012-10-07 18:00:05,550 - DEBUG - Taking top 8 variants by coverage in window 9:77855048-77855049
2012-10-07 18:00:05,770 - DEBUG - Taking top 8 variants by coverage in window 9:77856259-77856260
2012-10-07 18:00:06,030 - DEBUG - Taking top 8 variants by coverage in window 9:77860149-77860150
2012-10-07 18:00:06,487 - DEBUG - Taking top 8 variants by coverage in window 9:77863368-77863369
2012-10-07 18:00:06,501 - DEBUG - Taking top 8 variants by coverage in window 9:77863387-77863388
2012-10-07 18:00:06,948 - DEBUG - Taking top 8 variants by coverage in window 9:77866403-77866407
2012-10-07 18:00:07,056 - DEBUG - Taking top 8 variants by coverage in window 9:77866414-77866416
2012-10-07 18:00:07,659 - DEBUG - Taking top 8 variants by coverage in window 9:77872424-77872425
2012-10-07 18:00:07,670 - DEBUG - Taking top 8 variants by coverage in window 9:77872430-77872431
2012-10-07 18:00:08,669 - DEBUG - Taking top 8 variants by coverage in window 9:77881063-77881069
2012-10-07 18:00:09,503 - DEBUG - Taking top 8 variants by coverage in window 9:77888225-77888231
2012-10-07 18:00:09,532 - DEBUG - Taking top 8 variants by coverage in window 9:77888242-77888243
2012-10-07 18:00:09,623 - DEBUG - Taking top 8 variants by coverage in window 9:77888439-77888440
2012-10-07 18:00:09,656 - DEBUG - Taking top 8 variants by coverage in window 9:77888448-77888449
2012-10-07 18:00:09,820 - DEBUG - Taking top 8 variants by coverage in window 9:77889318-77889319
2012-10-07 18:00:09,955 - DEBUG - Taking top 8 variants by coverage in window 9:77889852-77889857
2012-10-07 18:00:10,222 - DEBUG - Taking top 8 variants by coverage in window 9:77892899-77892900
2012-10-07 18:00:10,660 - DEBUG - Taking top 8 variants by coverage in window 9:77898658-77898659
2012-10-07 18:00:10,948 - DEBUG - Taking top 8 variants by coverage in window 9:77903208-77903209
2012-10-07 18:00:11,042 - DEBUG - Taking top 8 variants by coverage in window 9:77904253-77904254
2012-10-07 18:00:11,266 - DEBUG - Taking top 8 variants by coverage in window 9:77907035-77907036
2012-10-07 18:00:11,550 - DEBUG - Taking top 8 variants by coverage in window 9:77909854-77909858
2012-10-07 18:00:12,877 - DEBUG - Taking top 8 variants by coverage in window 9:77925261-77925262
2012-10-07 18:00:13,953 - DEBUG - Taking top 8 variants by coverage in window 9:77941359-77941360
2012-10-07 18:00:14,128 - DEBUG - Taking top 8 variants by coverage in window 9:77944290-77944291
2012-10-07 18:00:14,393 - DEBUG - Taking top 8 variants by coverage in window 9:77949610-77949611
2012-10-07 18:00:14,845 - DEBUG - Taking top 8 variants by coverage in window 9:77956063-77956064
2012-10-07 18:00:15,048 - DEBUG - Taking top 8 variants by coverage in window 9:77958391-77958392
2012-10-07 18:00:15,313 - DEBUG - Taking top 8 variants by coverage in window 9:77962327-77962329
2012-10-07 18:00:15,911 - DEBUG - Taking top 8 variants by coverage in window 9:77969454-77969455
2012-10-07 18:00:15,978 - DEBUG - Taking top 8 variants by coverage in window 9:77969806-77969809
2012-10-07 18:00:16,023 - DEBUG - Taking top 8 variants by coverage in window 9:77969810-77969811
2012-10-07 18:00:16,038 - DEBUG - Taking top 8 variants by coverage in window 9:77969812-77969813
2012-10-07 18:00:16,642 - DEBUG - Taking top 8 variants by coverage in window 9:77976205-77976206
2012-10-07 18:00:17,206 - DEBUG - Taking top 8 variants by coverage in window 9:77981063-77981064
2012-10-07 18:00:17,228 - DEBUG - Taking top 8 variants by coverage in window 9:77981066-77981067
2012-10-07 18:00:18,128 - DEBUG - Taking top 8 variants by coverage in window 9:77989249-77989250
2012-10-07 18:00:18,338 - DEBUG - Taking top 8 variants by coverage in window 9:77990862-77990867
2012-10-07 18:00:18,621 - DEBUG - Taking top 8 variants by coverage in window 9:77992758-77992763
2012-10-07 18:00:18,652 - DEBUG - Taking top 8 variants by coverage in window 9:77992764-77992765
2012-10-07 18:00:18,700 - DEBUG - Taking top 8 variants by coverage in window 9:77992786-77992787
2012-10-07 18:00:19,224 - DEBUG - Taking top 8 variants by coverage in window 9:77997797-77997798
2012-10-07 18:00:20,360 - DEBUG - Read 83348 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 18:00:20,591 - DEBUG - Read 90194 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 18:00:20,842 - DEBUG - Read 105574 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 18:00:21,119 - DEBUG - Read 105387 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 18:00:21,380 - DEBUG - Read 99526 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 18:00:21,631 - DEBUG - Read 95750 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 18:00:21,879 - DEBUG - Read 102123 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 18:00:22,115 - DEBUG - Read 88464 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 18:00:22,338 - DEBUG - Read 86279 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 18:00:22,569 - DEBUG - Read 87307 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 18:00:22,816 - DEBUG - Read 96343 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 18:00:23,031 - DEBUG - Read 85516 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 18:00:23,259 - DEBUG - Read 87056 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 18:00:23,490 - DEBUG - Read 96674 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 18:00:23,747 - DEBUG - Read 104975 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 18:00:23,959 - DEBUG - Read 79471 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 18:00:24,197 - DEBUG - Read 100291 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 18:00:24,444 - DEBUG - Read 96628 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 18:00:24,651 - DEBUG - Read 81801 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 18:00:24,876 - DEBUG - Read 83458 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 18:00:24,977 - DEBUG - Detected 25134 variants in 83348 reads
2012-10-07 18:00:25,161 - DEBUG - Detected 37403 variants in 90194 reads
2012-10-07 18:00:25,394 - DEBUG - Detected 47904 variants in 105574 reads
2012-10-07 18:00:25,674 - DEBUG - Detected 57590 variants in 105387 reads
2012-10-07 18:00:25,988 - DEBUG - Detected 64404 variants in 99526 reads
2012-10-07 18:00:26,332 - DEBUG - Detected 71868 variants in 95750 reads
2012-10-07 18:00:26,714 - DEBUG - Detected 85034 variants in 102123 reads
2012-10-07 18:00:27,188 - DEBUG - Detected 90731 variants in 88464 reads
2012-10-07 18:00:27,650 - DEBUG - Detected 96532 variants in 86279 reads
2012-10-07 18:00:28,141 - DEBUG - Detected 101998 variants in 87307 reads
2012-10-07 18:00:28,662 - DEBUG - Detected 107046 variants in 96343 reads
2012-10-07 18:00:29,192 - DEBUG - Detected 111184 variants in 85516 reads
2012-10-07 18:00:29,746 - DEBUG - Detected 115380 variants in 87056 reads
2012-10-07 18:00:30,381 - DEBUG - Detected 120478 variants in 96674 reads
2012-10-07 18:00:31,005 - DEBUG - Detected 128104 variants in 104975 reads
2012-10-07 18:00:31,629 - DEBUG - Detected 131930 variants in 79471 reads
2012-10-07 18:00:32,301 - DEBUG - Detected 136709 variants in 100291 reads
2012-10-07 18:00:33,045 - DEBUG - Detected 140974 variants in 96628 reads
2012-10-07 18:00:33,729 - DEBUG - Detected 144992 variants in 81801 reads
2012-10-07 18:00:34,440 - DEBUG - Detected 148957 variants in 83458 reads
2012-10-07 18:00:35,523 - DEBUG - Taking top 8 variants by coverage in window 9:78000101-78000102
2012-10-07 18:00:35,687 - DEBUG - Taking top 8 variants by coverage in window 9:78002012-78002018
2012-10-07 18:00:35,847 - DEBUG - Taking top 8 variants by coverage in window 9:78003749-78003750
2012-10-07 18:00:36,518 - DEBUG - Taking top 8 variants by coverage in window 9:78011451-78011452
2012-10-07 18:00:36,522 - DEBUG - Taking top 8 variants by coverage in window 9:78011452-78011454
2012-10-07 18:00:36,553 - DEBUG - Taking top 8 variants by coverage in window 9:78011618-78011619
2012-10-07 18:00:37,991 - DEBUG - Taking top 8 variants by coverage in window 9:78031078-78031082
2012-10-07 18:00:38,050 - DEBUG - Taking top 8 variants by coverage in window 9:78031108-78031109
2012-10-07 18:00:38,127 - DEBUG - Taking top 8 variants by coverage in window 9:78031679-78031680
2012-10-07 18:00:39,688 - DEBUG - Taking top 8 variants by coverage in window 9:78059634-78059635
2012-10-07 18:00:39,730 - DEBUG - Taking top 8 variants by coverage in window 9:78059641-78059643
2012-10-07 18:00:40,198 - DEBUG - Taking top 8 variants by coverage in window 9:78065771-78065772
2012-10-07 18:00:40,487 - DEBUG - Taking top 8 variants by coverage in window 9:78070273-78070298
2012-10-07 18:00:45,664 - DEBUG - Taking top 8 variants by coverage in window 9:78153508-78153516
2012-10-07 18:00:46,872 - DEBUG - Taking top 8 variants by coverage in window 9:78153570-78153580
2012-10-07 18:00:48,135 - DEBUG - Taking top 8 variants by coverage in window 9:78153604-78153607
2012-10-07 18:00:49,067 - DEBUG - Taking top 8 variants by coverage in window 9:78158303-78158307
2012-10-07 18:00:49,602 - DEBUG - Taking top 8 variants by coverage in window 9:78167103-78167104
2012-10-07 18:00:49,923 - DEBUG - Taking top 8 variants by coverage in window 9:78174480-78174481
2012-10-07 18:00:50,407 - DEBUG - Taking top 8 variants by coverage in window 9:78178620-78178628
2012-10-07 18:00:50,894 - DEBUG - Taking top 8 variants by coverage in window 9:78178648-78178657
2012-10-07 18:00:52,422 - DEBUG - Taking top 8 variants by coverage in window 9:78185120-78185125
2012-10-07 18:00:53,143 - DEBUG - Taking top 8 variants by coverage in window 9:78188781-78188790
2012-10-07 18:00:53,172 - DEBUG - Taking top 8 variants by coverage in window 9:78188880-78188881
2012-10-07 18:00:53,431 - DEBUG - Taking top 8 variants by coverage in window 9:78190156-78190157
2012-10-07 18:00:53,702 - DEBUG - Taking top 8 variants by coverage in window 9:78192707-78192710
2012-10-07 18:00:54,197 - DEBUG - Taking top 8 variants by coverage in window 9:78195212-78195222
2012-10-07 18:00:54,771 - DEBUG - Taking top 8 variants by coverage in window 9:78198297-78198302
2012-10-07 18:00:54,789 - DEBUG - Taking top 8 variants by coverage in window 9:78198493-78198498
2012-10-07 18:00:55,335 - DEBUG - Taking top 8 variants by coverage in window 9:78205760-78205761
2012-10-07 18:00:55,641 - DEBUG - Taking top 8 variants by coverage in window 9:78208847-78208848
2012-10-07 18:00:56,024 - DEBUG - Taking top 8 variants by coverage in window 9:78211191-78211192
2012-10-07 18:00:56,069 - DEBUG - Taking top 8 variants by coverage in window 9:78211197-78211198
2012-10-07 18:00:56,113 - DEBUG - Taking top 8 variants by coverage in window 9:78211202-78211203
2012-10-07 18:00:56,285 - DEBUG - Taking top 8 variants by coverage in window 9:78211250-78211251
2012-10-07 18:00:56,808 - DEBUG - Taking top 8 variants by coverage in window 9:78216960-78216961
2012-10-07 18:00:56,893 - DEBUG - Taking top 8 variants by coverage in window 9:78218039-78218040
2012-10-07 18:00:57,049 - DEBUG - Taking top 8 variants by coverage in window 9:78219886-78219888
2012-10-07 18:00:57,998 - DEBUG - Taking top 8 variants by coverage in window 9:78230713-78230717
2012-10-07 18:00:58,228 - DEBUG - Taking top 8 variants by coverage in window 9:78231981-78231982
2012-10-07 18:00:58,340 - DEBUG - Taking top 8 variants by coverage in window 9:78232405-78232406
2012-10-07 18:00:58,438 - DEBUG - Taking top 8 variants by coverage in window 9:78233459-78233460
2012-10-07 18:00:58,532 - DEBUG - Taking top 8 variants by coverage in window 9:78234086-78234087
2012-10-07 18:00:58,573 - DEBUG - Taking top 8 variants by coverage in window 9:78234322-78234323
2012-10-07 18:00:58,602 - DEBUG - Taking top 8 variants by coverage in window 9:78234345-78234346
2012-10-07 18:00:59,880 - DEBUG - Taking top 8 variants by coverage in window 9:78246430-78246431
2012-10-07 18:00:59,900 - DEBUG - Taking top 8 variants by coverage in window 9:78246440-78246442
2012-10-07 18:01:00,098 - DEBUG - Taking top 8 variants by coverage in window 9:78248876-78248877
2012-10-07 18:01:00,214 - DEBUG - Taking top 8 variants by coverage in window 9:78249712-78249726
2012-10-07 18:01:00,339 - DEBUG - Taking top 8 variants by coverage in window 9:78249861-78249862
2012-10-07 18:01:00,363 - DEBUG - Taking top 8 variants by coverage in window 9:78249883-78249889
2012-10-07 18:01:02,107 - DEBUG - Taking top 8 variants by coverage in window 9:78279621-78279622
2012-10-07 18:01:02,714 - DEBUG - Taking top 8 variants by coverage in window 9:78287782-78287783
2012-10-07 18:01:03,179 - DEBUG - Taking top 8 variants by coverage in window 9:78291989-78291991
2012-10-07 18:01:03,996 - DEBUG - Taking top 8 variants by coverage in window 9:78302664-78302665
2012-10-07 18:01:04,101 - DEBUG - Taking top 8 variants by coverage in window 9:78303174-78303175
2012-10-07 18:01:04,483 - DEBUG - Taking top 8 variants by coverage in window 9:78307241-78307242
2012-10-07 18:01:04,577 - DEBUG - Taking top 8 variants by coverage in window 9:78307902-78307903
2012-10-07 18:01:04,710 - DEBUG - Taking top 8 variants by coverage in window 9:78309909-78309913
2012-10-07 18:01:06,184 - DEBUG - Taking top 8 variants by coverage in window 9:78324113-78324118
2012-10-07 18:01:06,195 - DEBUG - Taking top 8 variants by coverage in window 9:78324126-78324127
2012-10-07 18:01:07,436 - DEBUG - Taking top 8 variants by coverage in window 9:78338536-78338537
2012-10-07 18:01:09,116 - DEBUG - Taking top 8 variants by coverage in window 9:78357845-78357856
2012-10-07 18:01:09,179 - DEBUG - Taking top 8 variants by coverage in window 9:78358814-78358815
2012-10-07 18:01:09,221 - DEBUG - Taking top 8 variants by coverage in window 9:78359176-78359177
2012-10-07 18:01:09,238 - DEBUG - Taking top 8 variants by coverage in window 9:78359382-78359383
2012-10-07 18:01:09,805 - DEBUG - Taking top 8 variants by coverage in window 9:78365261-78365263
2012-10-07 18:01:10,410 - DEBUG - Taking top 8 variants by coverage in window 9:78370729-78370730
2012-10-07 18:01:10,447 - DEBUG - Taking top 8 variants by coverage in window 9:78370843-78370844
2012-10-07 18:01:11,013 - DEBUG - Taking top 8 variants by coverage in window 9:78373846-78373847
2012-10-07 18:01:11,910 - DEBUG - Taking top 8 variants by coverage in window 9:78382824-78382831
2012-10-07 18:01:11,924 - DEBUG - Taking top 8 variants by coverage in window 9:78382832-78382833
2012-10-07 18:01:12,159 - DEBUG - Taking top 8 variants by coverage in window 9:78385426-78385427
2012-10-07 18:01:12,355 - DEBUG - Taking top 8 variants by coverage in window 9:78387820-78387825
2012-10-07 18:01:12,380 - DEBUG - Taking top 8 variants by coverage in window 9:78387986-78387987
2012-10-07 18:01:12,985 - DEBUG - Taking top 8 variants by coverage in window 9:78395768-78395769
2012-10-07 18:01:13,046 - DEBUG - Taking top 8 variants by coverage in window 9:78395934-78395935
2012-10-07 18:01:13,097 - DEBUG - Taking top 8 variants by coverage in window 9:78395950-78395951
2012-10-07 18:01:13,367 - DEBUG - Taking top 8 variants by coverage in window 9:78397403-78397416
2012-10-07 18:01:14,074 - DEBUG - Taking top 8 variants by coverage in window 9:78401628-78401633
2012-10-07 18:01:14,343 - DEBUG - Taking top 8 variants by coverage in window 9:78404492-78404493
2012-10-07 18:01:14,376 - DEBUG - Taking top 8 variants by coverage in window 9:78404840-78404841
2012-10-07 18:01:14,489 - DEBUG - Taking top 8 variants by coverage in window 9:78406207-78406208
2012-10-07 18:01:14,742 - DEBUG - Taking top 8 variants by coverage in window 9:78409645-78409646
2012-10-07 18:01:14,830 - DEBUG - Taking top 8 variants by coverage in window 9:78410219-78410220
2012-10-07 18:01:14,838 - DEBUG - Taking top 8 variants by coverage in window 9:78410221-78410224
2012-10-07 18:01:14,882 - DEBUG - Taking top 8 variants by coverage in window 9:78417712-78417713
2012-10-07 18:01:15,060 - DEBUG - Taking top 8 variants by coverage in window 9:78418626-78418627
2012-10-07 18:01:15,269 - DEBUG - Taking top 8 variants by coverage in window 9:78420227-78420229
2012-10-07 18:01:15,318 - DEBUG - Taking top 8 variants by coverage in window 9:78421255-78421256
2012-10-07 18:01:15,353 - DEBUG - Taking top 8 variants by coverage in window 9:78421817-78421818
2012-10-07 18:01:15,481 - DEBUG - Taking top 8 variants by coverage in window 9:78423399-78423400
2012-10-07 18:01:15,505 - DEBUG - Taking top 8 variants by coverage in window 9:78423442-78423444
2012-10-07 18:01:16,015 - DEBUG - Taking top 8 variants by coverage in window 9:78427850-78427851
2012-10-07 18:01:16,567 - DEBUG - Taking top 8 variants by coverage in window 9:78431702-78431703
2012-10-07 18:01:16,585 - DEBUG - Taking top 8 variants by coverage in window 9:78431706-78431707
2012-10-07 18:01:17,129 - DEBUG - Taking top 8 variants by coverage in window 9:78437193-78437194
2012-10-07 18:01:17,262 - DEBUG - Taking top 8 variants by coverage in window 9:78437787-78437788
2012-10-07 18:01:18,846 - DEBUG - Taking top 8 variants by coverage in window 9:78450727-78450729
2012-10-07 18:01:19,522 - DEBUG - Taking top 8 variants by coverage in window 9:78458040-78458042
2012-10-07 18:01:20,318 - DEBUG - Taking top 8 variants by coverage in window 9:78467950-78467951
2012-10-07 18:01:20,349 - DEBUG - Taking top 8 variants by coverage in window 9:78467993-78467994
2012-10-07 18:01:20,984 - DEBUG - Taking top 8 variants by coverage in window 9:78475622-78475628
2012-10-07 18:01:21,260 - DEBUG - Taking top 8 variants by coverage in window 9:78479253-78479256
2012-10-07 18:01:21,798 - DEBUG - Taking top 8 variants by coverage in window 9:78484732-78484734
2012-10-07 18:01:21,860 - DEBUG - Taking top 8 variants by coverage in window 9:78484840-78484841
2012-10-07 18:01:23,074 - DEBUG - Taking top 8 variants by coverage in window 9:78488548-78488550
2012-10-07 18:01:23,522 - DEBUG - Taking top 8 variants by coverage in window 9:78492016-78492017
2012-10-07 18:01:23,543 - DEBUG - Taking top 8 variants by coverage in window 9:78492044-78492045
2012-10-07 18:01:23,817 - DEBUG - Taking top 8 variants by coverage in window 9:78494201-78494202
2012-10-07 18:01:23,878 - DEBUG - Taking top 8 variants by coverage in window 9:78494866-78494868
2012-10-07 18:01:24,163 - DEBUG - Taking top 8 variants by coverage in window 9:78498364-78498365
2012-10-07 18:01:24,561 - DEBUG - Taking top 8 variants by coverage in window 9:78509044-78509054
2012-10-07 18:01:24,948 - DEBUG - Taking top 8 variants by coverage in window 9:78513544-78513545
2012-10-07 18:01:25,058 - DEBUG - Taking top 8 variants by coverage in window 9:78514345-78514347
2012-10-07 18:01:25,509 - DEBUG - Taking top 8 variants by coverage in window 9:78520138-78520146
2012-10-07 18:01:25,610 - DEBUG - Taking top 8 variants by coverage in window 9:78520238-78520245
2012-10-07 18:01:25,975 - DEBUG - Taking top 8 variants by coverage in window 9:78521540-78521541
2012-10-07 18:01:26,093 - DEBUG - Taking top 8 variants by coverage in window 9:78521803-78521804
2012-10-07 18:01:26,216 - DEBUG - Taking top 8 variants by coverage in window 9:78522132-78522133
2012-10-07 18:01:26,494 - DEBUG - Taking top 8 variants by coverage in window 9:78523149-78523150
2012-10-07 18:01:29,049 - DEBUG - Taking top 8 variants by coverage in window 9:78548408-78548419
2012-10-07 18:01:29,155 - DEBUG - Taking top 8 variants by coverage in window 9:78548500-78548503
2012-10-07 18:01:30,124 - DEBUG - Taking top 8 variants by coverage in window 9:78549400-78549401
2012-10-07 18:01:30,721 - DEBUG - Taking top 8 variants by coverage in window 9:78553073-78553102
2012-10-07 18:01:31,211 - DEBUG - Taking top 8 variants by coverage in window 9:78559700-78559704
2012-10-07 18:01:31,220 - DEBUG - Taking top 8 variants by coverage in window 9:78559708-78559719
2012-10-07 18:01:31,284 - DEBUG - Taking top 8 variants by coverage in window 9:78559795-78559796
2012-10-07 18:01:31,655 - DEBUG - Taking top 8 variants by coverage in window 9:78564792-78564797
2012-10-07 18:01:31,738 - DEBUG - Taking top 8 variants by coverage in window 9:78564914-78564918
2012-10-07 18:01:31,872 - DEBUG - Taking top 8 variants by coverage in window 9:78566145-78566146
2012-10-07 18:01:31,942 - DEBUG - Taking top 8 variants by coverage in window 9:78566548-78566549
2012-10-07 18:01:32,616 - DEBUG - Taking top 8 variants by coverage in window 9:78571097-78571098
2012-10-07 18:01:33,165 - DEBUG - Taking top 8 variants by coverage in window 9:78577598-78577601
2012-10-07 18:01:33,175 - DEBUG - Taking top 8 variants by coverage in window 9:78577602-78577603
2012-10-07 18:01:33,203 - DEBUG - Taking top 8 variants by coverage in window 9:78577626-78577627
2012-10-07 18:01:33,555 - DEBUG - Taking top 8 variants by coverage in window 9:78581297-78581298
2012-10-07 18:01:34,287 - DEBUG - Taking top 8 variants by coverage in window 9:78589811-78589812
2012-10-07 18:01:36,795 - DEBUG - Taking top 8 variants by coverage in window 9:78633346-78633347
2012-10-07 18:01:36,852 - DEBUG - Taking top 8 variants by coverage in window 9:78633567-78633568
2012-10-07 18:01:37,386 - DEBUG - Taking top 8 variants by coverage in window 9:78639363-78639364
2012-10-07 18:01:37,710 - DEBUG - Taking top 8 variants by coverage in window 9:78643947-78643948
2012-10-07 18:01:38,358 - DEBUG - Taking top 8 variants by coverage in window 9:78651023-78651024
2012-10-07 18:01:38,388 - DEBUG - Taking top 8 variants by coverage in window 9:78651039-78651040
2012-10-07 18:01:38,990 - DEBUG - Taking top 8 variants by coverage in window 9:78658798-78658799
2012-10-07 18:01:39,008 - DEBUG - Taking top 8 variants by coverage in window 9:78658811-78658812
2012-10-07 18:01:39,508 - DEBUG - Taking top 8 variants by coverage in window 9:78663821-78663822
2012-10-07 18:01:39,534 - DEBUG - Taking top 8 variants by coverage in window 9:78663832-78663833
2012-10-07 18:01:39,651 - DEBUG - Taking top 8 variants by coverage in window 9:78665675-78665676
2012-10-07 18:01:39,725 - DEBUG - Taking top 8 variants by coverage in window 9:78666380-78666385
2012-10-07 18:01:39,762 - DEBUG - Taking top 8 variants by coverage in window 9:78669721-78669722
2012-10-07 18:01:39,892 - DEBUG - Taking top 8 variants by coverage in window 9:78671113-78671116
2012-10-07 18:01:39,921 - DEBUG - Taking top 8 variants by coverage in window 9:78678179-78678180
2012-10-07 18:01:40,468 - DEBUG - Taking top 8 variants by coverage in window 9:78686275-78686276
2012-10-07 18:01:40,712 - DEBUG - Taking top 8 variants by coverage in window 9:78688986-78688987
2012-10-07 18:01:41,456 - DEBUG - Taking top 8 variants by coverage in window 9:78694204-78694205
2012-10-07 18:01:41,474 - DEBUG - Taking top 8 variants by coverage in window 9:78694206-78694207
2012-10-07 18:01:41,951 - DEBUG - Taking top 8 variants by coverage in window 9:78701340-78701364
2012-10-07 18:01:42,033 - DEBUG - Taking top 8 variants by coverage in window 9:78701787-78701788
2012-10-07 18:01:42,041 - DEBUG - Taking top 8 variants by coverage in window 9:78701789-78701790
2012-10-07 18:01:42,320 - DEBUG - Taking top 8 variants by coverage in window 9:78704456-78704457
2012-10-07 18:01:42,774 - DEBUG - Taking top 8 variants by coverage in window 9:78709195-78709196
2012-10-07 18:01:42,829 - DEBUG - Taking top 8 variants by coverage in window 9:78709328-78709330
2012-10-07 18:01:44,092 - DEBUG - Taking top 8 variants by coverage in window 9:78718174-78718176
2012-10-07 18:01:45,019 - DEBUG - Taking top 8 variants by coverage in window 9:78729300-78729301
2012-10-07 18:01:45,093 - DEBUG - Taking top 8 variants by coverage in window 9:78730643-78730644
2012-10-07 18:01:45,818 - DEBUG - Taking top 8 variants by coverage in window 9:78749590-78749591
2012-10-07 18:01:45,835 - DEBUG - Taking top 8 variants by coverage in window 9:78749597-78749599
2012-10-07 18:01:45,923 - DEBUG - Taking top 8 variants by coverage in window 9:78750146-78750148
2012-10-07 18:01:45,953 - DEBUG - Taking top 8 variants by coverage in window 9:78750173-78750174
2012-10-07 18:01:46,155 - DEBUG - Taking top 8 variants by coverage in window 9:78752543-78752545
2012-10-07 18:01:46,494 - DEBUG - Taking top 8 variants by coverage in window 9:78758804-78758808
2012-10-07 18:01:48,295 - DEBUG - Taking top 8 variants by coverage in window 9:78791844-78791845
2012-10-07 18:01:48,411 - DEBUG - Taking top 8 variants by coverage in window 9:78792918-78792925
2012-10-07 18:01:48,817 - DEBUG - Taking top 8 variants by coverage in window 9:78797926-78797927
2012-10-07 18:01:49,208 - DEBUG - Taking top 8 variants by coverage in window 9:78802852-78802853
2012-10-07 18:01:49,605 - DEBUG - Taking top 8 variants by coverage in window 9:78808405-78808410
2012-10-07 18:01:50,023 - DEBUG - Taking top 8 variants by coverage in window 9:78809095-78809096
2012-10-07 18:01:50,977 - DEBUG - Taking top 8 variants by coverage in window 9:78829362-78829363
2012-10-07 18:01:52,101 - DEBUG - Taking top 8 variants by coverage in window 9:78846071-78846072
2012-10-07 18:01:53,531 - DEBUG - Taking top 8 variants by coverage in window 9:78870717-78870718
2012-10-07 18:01:54,461 - DEBUG - Taking top 8 variants by coverage in window 9:78886470-78886473
2012-10-07 18:01:54,571 - DEBUG - Taking top 8 variants by coverage in window 9:78887822-78887823
2012-10-07 18:01:54,702 - DEBUG - Taking top 8 variants by coverage in window 9:78891120-78891121
2012-10-07 18:01:55,333 - DEBUG - Taking top 8 variants by coverage in window 9:78902835-78902836
2012-10-07 18:01:55,978 - DEBUG - Taking top 8 variants by coverage in window 9:78913867-78913868
2012-10-07 18:01:55,992 - DEBUG - Taking top 8 variants by coverage in window 9:78913869-78913870
2012-10-07 18:01:56,173 - DEBUG - Taking top 8 variants by coverage in window 9:78916622-78916623
2012-10-07 18:01:56,248 - DEBUG - Taking top 8 variants by coverage in window 9:78916996-78916997
2012-10-07 18:01:56,419 - DEBUG - Taking top 8 variants by coverage in window 9:78918311-78918312
2012-10-07 18:01:56,966 - DEBUG - Taking top 8 variants by coverage in window 9:78928151-78928152
2012-10-07 18:01:58,145 - DEBUG - Taking top 8 variants by coverage in window 9:78950707-78950708
2012-10-07 18:01:58,985 - DEBUG - Taking top 8 variants by coverage in window 9:78957927-78957937
2012-10-07 18:01:59,116 - DEBUG - Taking top 8 variants by coverage in window 9:78958088-78958094
2012-10-07 18:01:59,340 - DEBUG - Taking top 8 variants by coverage in window 9:78958134-78958140
2012-10-07 18:01:59,798 - DEBUG - Taking top 8 variants by coverage in window 9:78960717-78960718
2012-10-07 18:01:59,988 - DEBUG - Taking top 8 variants by coverage in window 9:78963624-78963625
2012-10-07 18:02:00,509 - DEBUG - Taking top 8 variants by coverage in window 9:78970008-78970013
2012-10-07 18:02:01,458 - DEBUG - Taking top 8 variants by coverage in window 9:78976633-78976634
2012-10-07 18:02:01,994 - DEBUG - Taking top 8 variants by coverage in window 9:78982563-78982564
2012-10-07 18:02:02,023 - DEBUG - Taking top 8 variants by coverage in window 9:78982570-78982572
2012-10-07 18:02:02,129 - DEBUG - Taking top 8 variants by coverage in window 9:78983268-78983269
2012-10-07 18:02:04,150 - DEBUG - Read 85641 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 18:02:04,369 - DEBUG - Read 91917 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 18:02:04,609 - DEBUG - Read 108612 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 18:02:04,869 - DEBUG - Read 107770 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 18:02:05,118 - DEBUG - Read 102671 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 18:02:05,346 - DEBUG - Read 97984 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 18:02:05,585 - DEBUG - Read 104620 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 18:02:05,811 - DEBUG - Read 91584 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 18:02:06,022 - DEBUG - Read 87105 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 18:02:06,242 - DEBUG - Read 90474 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 18:02:06,480 - DEBUG - Read 100428 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 18:02:06,686 - DEBUG - Read 87512 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 18:02:06,898 - DEBUG - Read 88355 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 18:02:07,120 - DEBUG - Read 99055 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 18:02:07,365 - DEBUG - Read 107805 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 18:02:07,566 - DEBUG - Read 80916 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 18:02:07,797 - DEBUG - Read 104261 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 18:02:08,034 - DEBUG - Read 100342 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 18:02:08,228 - DEBUG - Read 82580 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 18:02:08,448 - DEBUG - Read 86766 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 18:02:08,541 - DEBUG - Detected 23578 variants in 85641 reads
2012-10-07 18:02:08,695 - DEBUG - Detected 31949 variants in 91917 reads
2012-10-07 18:02:08,896 - DEBUG - Detected 39490 variants in 108612 reads
2012-10-07 18:02:09,124 - DEBUG - Detected 47335 variants in 107770 reads
2012-10-07 18:02:09,377 - DEBUG - Detected 53231 variants in 102671 reads
2012-10-07 18:02:09,677 - DEBUG - Detected 58643 variants in 97984 reads
2012-10-07 18:02:09,980 - DEBUG - Detected 70709 variants in 104620 reads
2012-10-07 18:02:10,330 - DEBUG - Detected 75207 variants in 91584 reads
2012-10-07 18:02:10,697 - DEBUG - Detected 79943 variants in 87105 reads
2012-10-07 18:02:11,084 - DEBUG - Detected 84129 variants in 90474 reads
2012-10-07 18:02:11,506 - DEBUG - Detected 88468 variants in 100428 reads
2012-10-07 18:02:11,922 - DEBUG - Detected 92190 variants in 87512 reads
2012-10-07 18:02:12,391 - DEBUG - Detected 95689 variants in 88355 reads
2012-10-07 18:02:12,854 - DEBUG - Detected 99651 variants in 99055 reads
2012-10-07 18:02:13,351 - DEBUG - Detected 106495 variants in 107805 reads
2012-10-07 18:02:13,852 - DEBUG - Detected 110084 variants in 80916 reads
2012-10-07 18:02:14,392 - DEBUG - Detected 113603 variants in 104261 reads
2012-10-07 18:02:14,942 - DEBUG - Detected 117128 variants in 100342 reads
2012-10-07 18:02:15,535 - DEBUG - Detected 120725 variants in 82580 reads
2012-10-07 18:02:16,105 - DEBUG - Detected 124576 variants in 86766 reads
2012-10-07 18:02:17,093 - DEBUG - Taking top 8 variants by coverage in window 9:79003569-79003570
2012-10-07 18:02:17,151 - DEBUG - Taking top 8 variants by coverage in window 9:79003734-79003736
2012-10-07 18:02:17,488 - DEBUG - Taking top 8 variants by coverage in window 9:79009123-79009124
2012-10-07 18:02:17,657 - DEBUG - Taking top 8 variants by coverage in window 9:79012155-79012156
2012-10-07 18:02:17,695 - DEBUG - Taking top 8 variants by coverage in window 9:79012954-79012955
2012-10-07 18:02:17,845 - DEBUG - Taking top 8 variants by coverage in window 9:79014784-79014785
2012-10-07 18:02:18,398 - DEBUG - Taking top 8 variants by coverage in window 9:79024017-79024018
2012-10-07 18:02:18,678 - DEBUG - Taking top 8 variants by coverage in window 9:79028861-79028862
2012-10-07 18:02:19,046 - DEBUG - Taking top 8 variants by coverage in window 9:79033425-79033426
2012-10-07 18:02:19,071 - DEBUG - Taking top 8 variants by coverage in window 9:79033467-79033468
2012-10-07 18:02:19,297 - DEBUG - Taking top 8 variants by coverage in window 9:79037622-79037623
2012-10-07 18:02:20,623 - DEBUG - Taking top 8 variants by coverage in window 9:79059138-79059139
2012-10-07 18:02:21,074 - DEBUG - Taking top 8 variants by coverage in window 9:79066032-79066033
2012-10-07 18:02:21,118 - DEBUG - Taking top 8 variants by coverage in window 9:79066245-79066246
2012-10-07 18:02:21,148 - DEBUG - Taking top 8 variants by coverage in window 9:79066471-79066472
2012-10-07 18:02:21,178 - DEBUG - Taking top 8 variants by coverage in window 9:79067103-79067104
2012-10-07 18:02:22,340 - DEBUG - Taking top 8 variants by coverage in window 9:79083394-79083395
2012-10-07 18:02:23,606 - DEBUG - Taking top 8 variants by coverage in window 9:79099143-79099144
2012-10-07 18:02:23,779 - DEBUG - Taking top 8 variants by coverage in window 9:79102276-79102277
2012-10-07 18:02:23,884 - DEBUG - Taking top 8 variants by coverage in window 9:79111336-79111337
2012-10-07 18:02:25,075 - DEBUG - Taking top 8 variants by coverage in window 9:79131589-79131590
2012-10-07 18:02:25,088 - DEBUG - Taking top 8 variants by coverage in window 9:79131592-79131593
2012-10-07 18:02:25,250 - DEBUG - Taking top 8 variants by coverage in window 9:79133468-79133469
2012-10-07 18:02:26,128 - DEBUG - Taking top 8 variants by coverage in window 9:79142949-79142950
2012-10-07 18:02:26,151 - DEBUG - Taking top 8 variants by coverage in window 9:79142954-79142956
2012-10-07 18:02:26,622 - DEBUG - Taking top 8 variants by coverage in window 9:79147089-79147095
2012-10-07 18:02:27,226 - DEBUG - Taking top 8 variants by coverage in window 9:79154413-79154421
2012-10-07 18:02:27,844 - DEBUG - Taking top 8 variants by coverage in window 9:79161234-79161235
2012-10-07 18:02:27,929 - DEBUG - Taking top 8 variants by coverage in window 9:79162403-79162409
2012-10-07 18:02:28,355 - DEBUG - Taking top 8 variants by coverage in window 9:79169611-79169612
2012-10-07 18:02:29,628 - DEBUG - Taking top 8 variants by coverage in window 9:79186369-79186370
2012-10-07 18:02:30,028 - DEBUG - Taking top 8 variants by coverage in window 9:79190615-79190621
2012-10-07 18:02:30,884 - DEBUG - Taking top 8 variants by coverage in window 9:79200956-79200957
2012-10-07 18:02:31,027 - DEBUG - Taking top 8 variants by coverage in window 9:79202342-79202343
2012-10-07 18:02:31,379 - DEBUG - Taking top 8 variants by coverage in window 9:79209124-79209125
2012-10-07 18:02:31,989 - DEBUG - Taking top 8 variants by coverage in window 9:79218185-79218186
2012-10-07 18:02:32,522 - DEBUG - Taking top 8 variants by coverage in window 9:79227506-79227515
2012-10-07 18:02:33,255 - DEBUG - Taking top 8 variants by coverage in window 9:79233231-79233236
2012-10-07 18:02:33,340 - DEBUG - Taking top 8 variants by coverage in window 9:79234366-79234373
2012-10-07 18:02:33,678 - DEBUG - Taking top 8 variants by coverage in window 9:79239218-79239220
2012-10-07 18:02:33,685 - DEBUG - Taking top 8 variants by coverage in window 9:79239223-79239257
2012-10-07 18:02:34,226 - DEBUG - Taking top 8 variants by coverage in window 9:79250207-79250227
2012-10-07 18:02:34,683 - DEBUG - Taking top 8 variants by coverage in window 9:79262070-79262071
2012-10-07 18:02:34,746 - DEBUG - Taking top 8 variants by coverage in window 9:79262745-79262752
2012-10-07 18:02:35,291 - DEBUG - Taking top 8 variants by coverage in window 9:79270605-79270607
2012-10-07 18:02:35,945 - DEBUG - Taking top 8 variants by coverage in window 9:79279840-79279841
2012-10-07 18:02:36,036 - DEBUG - Taking top 8 variants by coverage in window 9:79280692-79280693
2012-10-07 18:02:36,338 - DEBUG - Taking top 8 variants by coverage in window 9:79285194-79285195
2012-10-07 18:02:36,349 - DEBUG - Taking top 8 variants by coverage in window 9:79285196-79285197
2012-10-07 18:02:36,463 - DEBUG - Taking top 8 variants by coverage in window 9:79286986-79286987
2012-10-07 18:02:36,801 - DEBUG - Taking top 8 variants by coverage in window 9:79291522-79291523
2012-10-07 18:02:36,853 - DEBUG - Taking top 8 variants by coverage in window 9:79291551-79291552
2012-10-07 18:02:37,058 - DEBUG - Taking top 8 variants by coverage in window 9:79294104-79294105
2012-10-07 18:02:37,724 - DEBUG - Taking top 8 variants by coverage in window 9:79303434-79303435
2012-10-07 18:02:38,039 - DEBUG - Taking top 8 variants by coverage in window 9:79305568-79305573
2012-10-07 18:02:38,074 - DEBUG - Taking top 8 variants by coverage in window 9:79305629-79305630
2012-10-07 18:02:38,427 - DEBUG - Taking top 8 variants by coverage in window 9:79309974-79309975
2012-10-07 18:02:38,437 - DEBUG - Taking top 8 variants by coverage in window 9:79309981-79309982
2012-10-07 18:02:38,615 - DEBUG - Taking top 8 variants by coverage in window 9:79313665-79313675
2012-10-07 18:02:38,914 - DEBUG - Taking top 8 variants by coverage in window 9:79315973-79315975
2012-10-07 18:02:39,268 - DEBUG - Taking top 8 variants by coverage in window 9:79326084-79326085
2012-10-07 18:02:39,282 - DEBUG - Taking top 8 variants by coverage in window 9:79326087-79326088
2012-10-07 18:02:39,975 - DEBUG - Taking top 8 variants by coverage in window 9:79344418-79344419
2012-10-07 18:02:40,073 - DEBUG - Taking top 8 variants by coverage in window 9:79346058-79346059
2012-10-07 18:02:40,655 - DEBUG - Taking top 8 variants by coverage in window 9:79354851-79354852
2012-10-07 18:02:40,902 - DEBUG - Taking top 8 variants by coverage in window 9:79357278-79357279
2012-10-07 18:02:42,120 - DEBUG - Taking top 8 variants by coverage in window 9:79375922-79375923
2012-10-07 18:02:43,123 - DEBUG - Taking top 8 variants by coverage in window 9:79394133-79394134
2012-10-07 18:02:43,299 - DEBUG - Taking top 8 variants by coverage in window 9:79396577-79396578
2012-10-07 18:02:43,435 - DEBUG - Taking top 8 variants by coverage in window 9:79398322-79398323
2012-10-07 18:02:43,626 - DEBUG - Taking top 8 variants by coverage in window 9:79400969-79400970
2012-10-07 18:02:43,643 - DEBUG - Taking top 8 variants by coverage in window 9:79401002-79401003
2012-10-07 18:02:44,124 - DEBUG - Taking top 8 variants by coverage in window 9:79406534-79406535
2012-10-07 18:02:44,834 - DEBUG - Taking top 8 variants by coverage in window 9:79412890-79412891
2012-10-07 18:02:44,851 - DEBUG - Taking top 8 variants by coverage in window 9:79412909-79412910
2012-10-07 18:02:45,740 - DEBUG - Taking top 8 variants by coverage in window 9:79418764-79418781
2012-10-07 18:02:45,918 - DEBUG - Taking top 8 variants by coverage in window 9:79422032-79422033
2012-10-07 18:02:46,509 - DEBUG - Taking top 8 variants by coverage in window 9:79429713-79429714
2012-10-07 18:02:46,525 - DEBUG - Taking top 8 variants by coverage in window 9:79429714-79429715
2012-10-07 18:02:47,021 - DEBUG - Taking top 8 variants by coverage in window 9:79434702-79434703
2012-10-07 18:02:47,218 - DEBUG - Taking top 8 variants by coverage in window 9:79436775-79436776
2012-10-07 18:02:48,121 - DEBUG - Taking top 8 variants by coverage in window 9:79450658-79450659
2012-10-07 18:02:48,388 - DEBUG - Taking top 8 variants by coverage in window 9:79455204-79455205
2012-10-07 18:02:48,438 - DEBUG - Taking top 8 variants by coverage in window 9:79455463-79455464
2012-10-07 18:02:49,027 - DEBUG - Taking top 8 variants by coverage in window 9:79466699-79466703
2012-10-07 18:02:49,328 - DEBUG - Taking top 8 variants by coverage in window 9:79469105-79469107
2012-10-07 18:02:49,338 - DEBUG - Taking top 8 variants by coverage in window 9:79469108-79469110
2012-10-07 18:02:49,378 - DEBUG - Taking top 8 variants by coverage in window 9:79469156-79469160
2012-10-07 18:02:49,718 - DEBUG - Taking top 8 variants by coverage in window 9:79475013-79475014
2012-10-07 18:02:49,830 - DEBUG - Taking top 8 variants by coverage in window 9:79475071-79475081
2012-10-07 18:02:50,487 - DEBUG - Taking top 8 variants by coverage in window 9:79483516-79483518
2012-10-07 18:02:51,997 - DEBUG - Taking top 8 variants by coverage in window 9:79516545-79516552
2012-10-07 18:02:53,265 - DEBUG - Taking top 8 variants by coverage in window 9:79542609-79542610
2012-10-07 18:02:54,862 - DEBUG - Taking top 8 variants by coverage in window 9:79576748-79576749
2012-10-07 18:02:55,513 - DEBUG - Taking top 8 variants by coverage in window 9:79584304-79584305
2012-10-07 18:02:55,553 - DEBUG - Taking top 8 variants by coverage in window 9:79584349-79584350
2012-10-07 18:02:57,819 - DEBUG - Taking top 8 variants by coverage in window 9:79620170-79620171
2012-10-07 18:02:57,869 - DEBUG - Taking top 8 variants by coverage in window 9:79620468-79620469
2012-10-07 18:02:58,639 - DEBUG - Taking top 8 variants by coverage in window 9:79641694-79641695
2012-10-07 18:02:59,212 - DEBUG - Taking top 8 variants by coverage in window 9:79653766-79653767
2012-10-07 18:03:00,206 - DEBUG - Taking top 8 variants by coverage in window 9:79671636-79671637
2012-10-07 18:03:00,367 - DEBUG - Taking top 8 variants by coverage in window 9:79675515-79675516
2012-10-07 18:03:01,239 - DEBUG - Taking top 8 variants by coverage in window 9:79690401-79690402
2012-10-07 18:03:02,491 - DEBUG - Taking top 8 variants by coverage in window 9:79705109-79705110
2012-10-07 18:03:02,667 - DEBUG - Taking top 8 variants by coverage in window 9:79706290-79706292
2012-10-07 18:03:03,027 - DEBUG - Taking top 8 variants by coverage in window 9:79709065-79709073
2012-10-07 18:03:03,631 - DEBUG - Taking top 8 variants by coverage in window 9:79715009-79715010
2012-10-07 18:03:04,366 - DEBUG - Taking top 8 variants by coverage in window 9:79726021-79726022
2012-10-07 18:03:04,455 - DEBUG - Taking top 8 variants by coverage in window 9:79726415-79726416
2012-10-07 18:03:07,213 - DEBUG - Taking top 8 variants by coverage in window 9:79769046-79769047
2012-10-07 18:03:07,793 - DEBUG - Taking top 8 variants by coverage in window 9:79776781-79776790
2012-10-07 18:03:08,631 - DEBUG - Taking top 8 variants by coverage in window 9:79788252-79788253
2012-10-07 18:03:08,661 - DEBUG - Taking top 8 variants by coverage in window 9:79788284-79788285
2012-10-07 18:03:09,037 - DEBUG - Taking top 8 variants by coverage in window 9:79790112-79790116
2012-10-07 18:03:09,066 - DEBUG - Taking top 8 variants by coverage in window 9:79790124-79790125
2012-10-07 18:03:09,337 - DEBUG - Taking top 8 variants by coverage in window 9:79792943-79792944
2012-10-07 18:03:09,424 - DEBUG - Taking top 8 variants by coverage in window 9:79793432-79793433
2012-10-07 18:03:09,504 - DEBUG - Taking top 8 variants by coverage in window 9:79794207-79794208
2012-10-07 18:03:09,513 - DEBUG - Taking top 8 variants by coverage in window 9:79794218-79794221
2012-10-07 18:03:09,527 - DEBUG - Taking top 8 variants by coverage in window 9:79794836-79794847
2012-10-07 18:03:09,901 - DEBUG - Taking top 8 variants by coverage in window 9:79798701-79798710
2012-10-07 18:03:09,984 - DEBUG - Taking top 8 variants by coverage in window 9:79798713-79798718
2012-10-07 18:03:10,117 - DEBUG - Taking top 8 variants by coverage in window 9:79798727-79798728
2012-10-07 18:03:10,156 - DEBUG - Taking top 8 variants by coverage in window 9:79798729-79798730
2012-10-07 18:03:10,227 - DEBUG - Taking top 8 variants by coverage in window 9:79798759-79798760
2012-10-07 18:03:10,289 - DEBUG - Taking top 8 variants by coverage in window 9:79798829-79798831
2012-10-07 18:03:10,525 - DEBUG - Taking top 8 variants by coverage in window 9:79800984-79800999
2012-10-07 18:03:10,628 - DEBUG - Taking top 8 variants by coverage in window 9:79801740-79801741
2012-10-07 18:03:11,425 - DEBUG - Taking top 8 variants by coverage in window 9:79809622-79809623
2012-10-07 18:03:12,462 - DEBUG - Taking top 8 variants by coverage in window 9:79826999-79827000
2012-10-07 18:03:12,506 - DEBUG - Taking top 8 variants by coverage in window 9:79827498-79827499
2012-10-07 18:03:12,515 - DEBUG - Taking top 8 variants by coverage in window 9:79827511-79827512
2012-10-07 18:03:12,710 - DEBUG - Taking top 8 variants by coverage in window 9:79829195-79829196
2012-10-07 18:03:12,866 - DEBUG - Taking top 8 variants by coverage in window 9:79831006-79831007
2012-10-07 18:03:13,171 - DEBUG - Taking top 8 variants by coverage in window 9:79836265-79836266
2012-10-07 18:03:14,276 - DEBUG - Taking top 8 variants by coverage in window 9:79848110-79848111
2012-10-07 18:03:14,320 - DEBUG - Taking top 8 variants by coverage in window 9:79848263-79848264
2012-10-07 18:03:14,922 - DEBUG - Taking top 8 variants by coverage in window 9:79857497-79857498
2012-10-07 18:03:14,962 - DEBUG - Taking top 8 variants by coverage in window 9:79857687-79857688
2012-10-07 18:03:15,514 - DEBUG - Taking top 8 variants by coverage in window 9:79866169-79866170
2012-10-07 18:03:16,293 - DEBUG - Taking top 8 variants by coverage in window 9:79877683-79877689
2012-10-07 18:03:16,669 - DEBUG - Taking top 8 variants by coverage in window 9:79883230-79883231
2012-10-07 18:03:16,702 - DEBUG - Taking top 8 variants by coverage in window 9:79883945-79883946
2012-10-07 18:03:18,037 - DEBUG - Taking top 8 variants by coverage in window 9:79913891-79913892
2012-10-07 18:03:18,160 - DEBUG - Taking top 8 variants by coverage in window 9:79915956-79915957
2012-10-07 18:03:18,294 - DEBUG - Taking top 8 variants by coverage in window 9:79919907-79919909
2012-10-07 18:03:18,928 - DEBUG - Taking top 8 variants by coverage in window 9:79932147-79932148
2012-10-07 18:03:19,509 - DEBUG - Taking top 8 variants by coverage in window 9:79940412-79940413
2012-10-07 18:03:19,809 - DEBUG - Taking top 8 variants by coverage in window 9:79948345-79948346
2012-10-07 18:03:19,823 - DEBUG - Taking top 8 variants by coverage in window 9:79948351-79948352
2012-10-07 18:03:19,847 - DEBUG - Taking top 8 variants by coverage in window 9:79949816-79949817
2012-10-07 18:03:20,846 - DEBUG - Taking top 8 variants by coverage in window 9:79982265-79982266
2012-10-07 18:03:21,258 - DEBUG - Taking top 8 variants by coverage in window 9:79990432-79990433
2012-10-07 18:03:22,566 - DEBUG - Read 76737 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 18:03:22,766 - DEBUG - Read 82418 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 18:03:22,985 - DEBUG - Read 97908 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 18:03:23,221 - DEBUG - Read 95199 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 18:03:23,453 - DEBUG - Read 94032 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 18:03:23,661 - DEBUG - Read 88342 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 18:03:23,880 - DEBUG - Read 94701 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 18:03:24,083 - DEBUG - Read 81753 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 18:03:24,277 - DEBUG - Read 78405 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 18:03:24,481 - DEBUG - Read 82847 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 18:03:24,697 - DEBUG - Read 90374 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 18:03:24,945 - DEBUG - Read 78520 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 18:03:25,140 - DEBUG - Read 79043 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 18:03:25,341 - DEBUG - Read 89412 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 18:03:25,565 - DEBUG - Read 96961 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 18:03:25,751 - DEBUG - Read 73094 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 18:03:25,963 - DEBUG - Read 93888 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 18:03:26,182 - DEBUG - Read 90919 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 18:03:26,357 - DEBUG - Read 72724 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 18:03:26,556 - DEBUG - Read 77893 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 18:03:26,641 - DEBUG - Detected 20601 variants in 76737 reads
2012-10-07 18:03:26,782 - DEBUG - Detected 31069 variants in 82418 reads
2012-10-07 18:03:26,973 - DEBUG - Detected 39621 variants in 97908 reads
2012-10-07 18:03:27,196 - DEBUG - Detected 46345 variants in 95199 reads
2012-10-07 18:03:27,465 - DEBUG - Detected 52059 variants in 94032 reads
2012-10-07 18:03:27,730 - DEBUG - Detected 57050 variants in 88342 reads
2012-10-07 18:03:28,028 - DEBUG - Detected 68025 variants in 94701 reads
2012-10-07 18:03:28,365 - DEBUG - Detected 72144 variants in 81753 reads
2012-10-07 18:03:28,719 - DEBUG - Detected 76672 variants in 78405 reads
2012-10-07 18:03:29,088 - DEBUG - Detected 81205 variants in 82847 reads
2012-10-07 18:03:29,487 - DEBUG - Detected 84997 variants in 90374 reads
2012-10-07 18:03:29,895 - DEBUG - Detected 87914 variants in 78520 reads
2012-10-07 18:03:30,353 - DEBUG - Detected 91278 variants in 79043 reads
2012-10-07 18:03:30,800 - DEBUG - Detected 95133 variants in 89412 reads
2012-10-07 18:03:31,278 - DEBUG - Detected 101526 variants in 96961 reads
2012-10-07 18:03:31,749 - DEBUG - Detected 104659 variants in 73094 reads
2012-10-07 18:03:32,260 - DEBUG - Detected 107624 variants in 93888 reads
2012-10-07 18:03:32,786 - DEBUG - Detected 111171 variants in 90919 reads
2012-10-07 18:03:33,359 - DEBUG - Detected 114409 variants in 72724 reads
2012-10-07 18:03:33,901 - DEBUG - Detected 117979 variants in 77893 reads
2012-10-07 18:03:34,777 - DEBUG - Taking top 8 variants by coverage in window 9:80001151-80001152
2012-10-07 18:03:34,801 - DEBUG - Taking top 8 variants by coverage in window 9:80001335-80001336
2012-10-07 18:03:34,932 - DEBUG - Taking top 8 variants by coverage in window 9:80002355-80002367
2012-10-07 18:03:35,510 - DEBUG - Taking top 8 variants by coverage in window 9:80014898-80014918
2012-10-07 18:03:35,707 - DEBUG - Taking top 8 variants by coverage in window 9:80018490-80018493
2012-10-07 18:03:35,782 - DEBUG - Taking top 8 variants by coverage in window 9:80019167-80019168
2012-10-07 18:03:36,106 - DEBUG - Taking top 8 variants by coverage in window 9:80021429-80021432
2012-10-07 18:03:36,338 - DEBUG - Taking top 8 variants by coverage in window 9:80022913-80022915
2012-10-07 18:03:36,876 - DEBUG - Taking top 8 variants by coverage in window 9:80029388-80029389
2012-10-07 18:03:37,946 - DEBUG - Taking top 8 variants by coverage in window 9:80041701-80041713
2012-10-07 18:03:38,415 - DEBUG - Taking top 8 variants by coverage in window 9:80044967-80044968
2012-10-07 18:03:38,433 - DEBUG - Taking top 8 variants by coverage in window 9:80044969-80044970
2012-10-07 18:03:38,486 - DEBUG - Taking top 8 variants by coverage in window 9:80045185-80045186
2012-10-07 18:03:38,625 - DEBUG - Taking top 8 variants by coverage in window 9:80046515-80046517
2012-10-07 18:03:38,650 - DEBUG - Taking top 8 variants by coverage in window 9:80047000-80047001
2012-10-07 18:03:39,214 - DEBUG - Taking top 8 variants by coverage in window 9:80052092-80052094
2012-10-07 18:03:39,321 - DEBUG - Taking top 8 variants by coverage in window 9:80052102-80052105
2012-10-07 18:03:39,346 - DEBUG - Taking top 8 variants by coverage in window 9:80052119-80052122
2012-10-07 18:03:39,851 - DEBUG - Taking top 8 variants by coverage in window 9:80056378-80056381
2012-10-07 18:03:40,430 - DEBUG - Taking top 8 variants by coverage in window 9:80062712-80062713
2012-10-07 18:03:40,460 - DEBUG - Taking top 8 variants by coverage in window 9:80062736-80062737
2012-10-07 18:03:40,487 - DEBUG - Taking top 8 variants by coverage in window 9:80062757-80062758
2012-10-07 18:03:41,186 - DEBUG - Taking top 8 variants by coverage in window 9:80071656-80071657
2012-10-07 18:03:41,606 - DEBUG - Taking top 8 variants by coverage in window 9:80077613-80077614
2012-10-07 18:03:42,152 - DEBUG - Taking top 8 variants by coverage in window 9:80083686-80083694
2012-10-07 18:03:42,269 - DEBUG - Taking top 8 variants by coverage in window 9:80084118-80084119
2012-10-07 18:03:42,571 - DEBUG - Taking top 8 variants by coverage in window 9:80085566-80085568
2012-10-07 18:03:43,341 - DEBUG - Taking top 8 variants by coverage in window 9:80090749-80090750
2012-10-07 18:03:46,378 - DEBUG - Taking top 8 variants by coverage in window 9:80131746-80131747
2012-10-07 18:03:47,989 - DEBUG - Taking top 8 variants by coverage in window 9:80148613-80148616
2012-10-07 18:03:48,471 - DEBUG - Taking top 8 variants by coverage in window 9:80154498-80154499
2012-10-07 18:03:48,583 - DEBUG - Taking top 8 variants by coverage in window 9:80154528-80154529
2012-10-07 18:03:49,150 - DEBUG - Taking top 8 variants by coverage in window 9:80160916-80160917
2012-10-07 18:03:49,205 - DEBUG - Taking top 8 variants by coverage in window 9:80161111-80161112
2012-10-07 18:03:49,349 - DEBUG - Taking top 8 variants by coverage in window 9:80162627-80162639
2012-10-07 18:03:49,739 - DEBUG - Taking top 8 variants by coverage in window 9:80166657-80166658
2012-10-07 18:03:49,847 - DEBUG - Taking top 8 variants by coverage in window 9:80166742-80166744
2012-10-07 18:03:49,955 - DEBUG - Taking top 8 variants by coverage in window 9:80169378-80169379
2012-10-07 18:03:50,406 - DEBUG - Taking top 8 variants by coverage in window 9:80175171-80175172
2012-10-07 18:03:50,613 - DEBUG - Taking top 8 variants by coverage in window 9:80178615-80178616
2012-10-07 18:03:50,960 - DEBUG - Taking top 8 variants by coverage in window 9:80182457-80182458
2012-10-07 18:03:51,122 - DEBUG - Taking top 8 variants by coverage in window 9:80184013-80184016
2012-10-07 18:03:51,330 - DEBUG - Taking top 8 variants by coverage in window 9:80185667-80185668
2012-10-07 18:03:51,421 - DEBUG - Taking top 8 variants by coverage in window 9:80187288-80187289
2012-10-07 18:03:51,834 - DEBUG - Taking top 8 variants by coverage in window 9:80191790-80191791
2012-10-07 18:03:51,856 - DEBUG - Taking top 8 variants by coverage in window 9:80191815-80191816
2012-10-07 18:03:52,553 - DEBUG - Taking top 8 variants by coverage in window 9:80200613-80200614
2012-10-07 18:03:52,702 - DEBUG - Taking top 8 variants by coverage in window 9:80201220-80201221
2012-10-07 18:03:52,721 - DEBUG - Taking top 8 variants by coverage in window 9:80201222-80201224
2012-10-07 18:03:53,369 - DEBUG - Taking top 8 variants by coverage in window 9:80206196-80206201
2012-10-07 18:03:53,666 - DEBUG - Taking top 8 variants by coverage in window 9:80208626-80208627
2012-10-07 18:03:53,838 - DEBUG - Taking top 8 variants by coverage in window 9:80209704-80209712
2012-10-07 18:03:53,929 - DEBUG - Taking top 8 variants by coverage in window 9:80209947-80209948
2012-10-07 18:03:54,439 - DEBUG - Taking top 8 variants by coverage in window 9:80217460-80217462
2012-10-07 18:03:54,640 - DEBUG - Taking top 8 variants by coverage in window 9:80219234-80219235
2012-10-07 18:03:54,754 - DEBUG - Taking top 8 variants by coverage in window 9:80219699-80219700
2012-10-07 18:03:54,770 - DEBUG - Taking top 8 variants by coverage in window 9:80219701-80219702
2012-10-07 18:03:54,932 - DEBUG - Taking top 8 variants by coverage in window 9:80220755-80220756
2012-10-07 18:03:55,993 - DEBUG - Taking top 8 variants by coverage in window 9:80236066-80236067
2012-10-07 18:03:56,048 - DEBUG - Taking top 8 variants by coverage in window 9:80236494-80236495
2012-10-07 18:03:56,843 - DEBUG - Taking top 8 variants by coverage in window 9:80244344-80244345
2012-10-07 18:03:57,391 - DEBUG - Taking top 8 variants by coverage in window 9:80253476-80253477
2012-10-07 18:03:57,413 - DEBUG - Taking top 8 variants by coverage in window 9:80253494-80253495
2012-10-07 18:03:57,704 - DEBUG - Taking top 8 variants by coverage in window 9:80256169-80256170
2012-10-07 18:03:57,710 - DEBUG - Taking top 8 variants by coverage in window 9:80328168-80328169
2012-10-07 18:03:57,995 - DEBUG - Taking top 8 variants by coverage in window 9:80331766-80331767
2012-10-07 18:03:59,448 - DEBUG - Taking top 8 variants by coverage in window 9:80347237-80347243
2012-10-07 18:04:01,123 - DEBUG - Taking top 8 variants by coverage in window 9:80365613-80365614
2012-10-07 18:04:01,251 - DEBUG - Taking top 8 variants by coverage in window 9:80366422-80366423
2012-10-07 18:04:01,682 - DEBUG - Taking top 8 variants by coverage in window 9:80371374-80371376
2012-10-07 18:04:02,387 - DEBUG - Taking top 8 variants by coverage in window 9:80383936-80383937
2012-10-07 18:04:04,009 - DEBUG - Taking top 8 variants by coverage in window 9:80403709-80403710
2012-10-07 18:04:04,256 - DEBUG - Taking top 8 variants by coverage in window 9:80408214-80408215
2012-10-07 18:04:04,524 - DEBUG - Taking top 8 variants by coverage in window 9:80410640-80410641
2012-10-07 18:04:07,524 - DEBUG - Taking top 8 variants by coverage in window 9:80456287-80456289
2012-10-07 18:04:07,717 - DEBUG - Taking top 8 variants by coverage in window 9:80457061-80457062
2012-10-07 18:04:08,190 - DEBUG - Taking top 8 variants by coverage in window 9:80461516-80461517
2012-10-07 18:04:08,419 - DEBUG - Taking top 8 variants by coverage in window 9:80464394-80464396
2012-10-07 18:04:08,473 - DEBUG - Taking top 8 variants by coverage in window 9:80465273-80465274
2012-10-07 18:04:08,810 - DEBUG - Taking top 8 variants by coverage in window 9:80471874-80471877
2012-10-07 18:04:08,877 - DEBUG - Taking top 8 variants by coverage in window 9:80472580-80472590
2012-10-07 18:04:08,926 - DEBUG - Taking top 8 variants by coverage in window 9:80473624-80473635
2012-10-07 18:04:09,406 - DEBUG - Taking top 8 variants by coverage in window 9:80478492-80478494
2012-10-07 18:04:09,989 - DEBUG - Taking top 8 variants by coverage in window 9:80494822-80494823
2012-10-07 18:04:10,128 - DEBUG - Taking top 8 variants by coverage in window 9:80498988-80498989
2012-10-07 18:04:11,001 - DEBUG - Taking top 8 variants by coverage in window 9:80511989-80511990
2012-10-07 18:04:11,692 - DEBUG - Taking top 8 variants by coverage in window 9:80521198-80521208
2012-10-07 18:04:13,453 - DEBUG - Taking top 8 variants by coverage in window 9:80549410-80549411
2012-10-07 18:04:13,565 - DEBUG - Taking top 8 variants by coverage in window 9:80550494-80550495
2012-10-07 18:04:13,873 - DEBUG - Taking top 8 variants by coverage in window 9:80560323-80560324
2012-10-07 18:04:14,021 - DEBUG - Taking top 8 variants by coverage in window 9:80562992-80562993
2012-10-07 18:04:14,174 - DEBUG - Taking top 8 variants by coverage in window 9:80565104-80565105
2012-10-07 18:04:14,187 - DEBUG - Taking top 8 variants by coverage in window 9:80565119-80565120
2012-10-07 18:04:14,369 - DEBUG - Taking top 8 variants by coverage in window 9:80568080-80568081
2012-10-07 18:04:15,158 - DEBUG - Taking top 8 variants by coverage in window 9:80584509-80584513
2012-10-07 18:04:16,130 - DEBUG - Taking top 8 variants by coverage in window 9:80597635-80597636
2012-10-07 18:04:16,589 - DEBUG - Taking top 8 variants by coverage in window 9:80604481-80604483
2012-10-07 18:04:17,362 - DEBUG - Taking top 8 variants by coverage in window 9:80614122-80614123
2012-10-07 18:04:17,486 - DEBUG - Taking top 8 variants by coverage in window 9:80614699-80614701
2012-10-07 18:04:19,680 - DEBUG - Taking top 8 variants by coverage in window 9:80646204-80646205
2012-10-07 18:04:20,457 - DEBUG - Taking top 8 variants by coverage in window 9:80660869-80660870
2012-10-07 18:04:21,513 - DEBUG - Taking top 8 variants by coverage in window 9:80678327-80678328
2012-10-07 18:04:23,903 - DEBUG - Taking top 8 variants by coverage in window 9:80715681-80715690
2012-10-07 18:04:23,912 - DEBUG - Taking top 8 variants by coverage in window 9:80715713-80715714
2012-10-07 18:04:24,247 - DEBUG - Taking top 8 variants by coverage in window 9:80722392-80722397
2012-10-07 18:04:24,556 - DEBUG - Taking top 8 variants by coverage in window 9:80727900-80727907
2012-10-07 18:04:25,058 - DEBUG - Taking top 8 variants by coverage in window 9:80736654-80736656
2012-10-07 18:04:25,547 - DEBUG - Taking top 8 variants by coverage in window 9:80748959-80748963
2012-10-07 18:04:25,883 - DEBUG - Taking top 8 variants by coverage in window 9:80753708-80753709
2012-10-07 18:04:28,052 - DEBUG - Taking top 8 variants by coverage in window 9:80790306-80790307
2012-10-07 18:04:29,245 - DEBUG - Taking top 8 variants by coverage in window 9:80810739-80810740
2012-10-07 18:04:29,425 - DEBUG - Taking top 8 variants by coverage in window 9:80813129-80813130
2012-10-07 18:04:29,559 - DEBUG - Taking top 8 variants by coverage in window 9:80815500-80815512
2012-10-07 18:04:30,088 - DEBUG - Taking top 8 variants by coverage in window 9:80821920-80821921
2012-10-07 18:04:31,575 - DEBUG - Taking top 8 variants by coverage in window 9:80852148-80852149
2012-10-07 18:04:31,879 - DEBUG - Taking top 8 variants by coverage in window 9:80856930-80856931
2012-10-07 18:04:33,144 - DEBUG - Taking top 8 variants by coverage in window 9:80886960-80886961
2012-10-07 18:04:34,180 - DEBUG - Taking top 8 variants by coverage in window 9:80917049-80917050
2012-10-07 18:04:34,187 - DEBUG - Taking top 8 variants by coverage in window 9:80917050-80917051
2012-10-07 18:04:34,401 - DEBUG - Taking top 8 variants by coverage in window 9:80918194-80918195
2012-10-07 18:04:34,836 - DEBUG - Taking top 8 variants by coverage in window 9:80921603-80921609
2012-10-07 18:04:35,456 - DEBUG - Taking top 8 variants by coverage in window 9:80927079-80927080
2012-10-07 18:04:35,539 - DEBUG - Taking top 8 variants by coverage in window 9:80927799-80927800
2012-10-07 18:04:35,967 - DEBUG - Taking top 8 variants by coverage in window 9:80931401-80931405
2012-10-07 18:04:36,782 - DEBUG - Taking top 8 variants by coverage in window 9:80943791-80943792
2012-10-07 18:04:37,601 - DEBUG - Taking top 8 variants by coverage in window 9:80972942-80972945
2012-10-07 18:04:38,265 - DEBUG - Taking top 8 variants by coverage in window 9:80992959-80992960
2012-10-07 18:04:39,491 - DEBUG - Read 77284 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 18:04:39,699 - DEBUG - Read 84350 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 18:04:39,929 - DEBUG - Read 99611 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 18:04:40,176 - DEBUG - Read 97231 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 18:04:40,415 - DEBUG - Read 95847 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 18:04:40,633 - DEBUG - Read 89452 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 18:04:40,862 - DEBUG - Read 96673 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 18:04:41,071 - DEBUG - Read 83005 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 18:04:41,270 - DEBUG - Read 80892 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 18:04:41,485 - DEBUG - Read 85185 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 18:04:41,729 - DEBUG - Read 91788 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 18:04:41,923 - DEBUG - Read 79243 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 18:04:42,164 - DEBUG - Read 80184 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 18:04:42,373 - DEBUG - Read 89931 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 18:04:42,606 - DEBUG - Read 99170 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 18:04:42,797 - DEBUG - Read 73867 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 18:04:43,076 - DEBUG - Read 95243 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 18:04:43,304 - DEBUG - Read 93189 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 18:04:43,532 - DEBUG - Read 72322 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 18:04:43,739 - DEBUG - Read 80545 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 18:04:43,824 - DEBUG - Detected 20954 variants in 77284 reads
2012-10-07 18:04:43,964 - DEBUG - Detected 27174 variants in 84350 reads
2012-10-07 18:04:44,142 - DEBUG - Detected 33882 variants in 99611 reads
2012-10-07 18:04:44,342 - DEBUG - Detected 40539 variants in 97231 reads
2012-10-07 18:04:44,552 - DEBUG - Detected 45567 variants in 95847 reads
2012-10-07 18:04:44,816 - DEBUG - Detected 53546 variants in 89452 reads
2012-10-07 18:04:45,099 - DEBUG - Detected 64874 variants in 96673 reads
2012-10-07 18:04:45,402 - DEBUG - Detected 70524 variants in 83005 reads
2012-10-07 18:04:45,718 - DEBUG - Detected 76127 variants in 80892 reads
2012-10-07 18:04:46,091 - DEBUG - Detected 81271 variants in 85185 reads
2012-10-07 18:04:46,484 - DEBUG - Detected 85383 variants in 91788 reads
2012-10-07 18:04:46,878 - DEBUG - Detected 88450 variants in 79243 reads
2012-10-07 18:04:47,330 - DEBUG - Detected 92091 variants in 80184 reads
2012-10-07 18:04:47,771 - DEBUG - Detected 95717 variants in 89931 reads
2012-10-07 18:04:48,238 - DEBUG - Detected 101983 variants in 99170 reads
2012-10-07 18:04:48,712 - DEBUG - Detected 105650 variants in 73867 reads
2012-10-07 18:04:49,215 - DEBUG - Detected 108489 variants in 95243 reads
2012-10-07 18:04:49,739 - DEBUG - Detected 112498 variants in 93189 reads
2012-10-07 18:04:50,312 - DEBUG - Detected 116105 variants in 72322 reads
2012-10-07 18:04:50,850 - DEBUG - Detected 119685 variants in 80545 reads
2012-10-07 18:04:52,842 - DEBUG - Taking top 8 variants by coverage in window 9:81019677-81019679
2012-10-07 18:04:52,933 - DEBUG - Taking top 8 variants by coverage in window 9:81020778-81020779
2012-10-07 18:04:53,479 - DEBUG - Taking top 8 variants by coverage in window 9:81034750-81034751
2012-10-07 18:04:53,572 - DEBUG - Taking top 8 variants by coverage in window 9:81036875-81036876
2012-10-07 18:04:53,739 - DEBUG - Taking top 8 variants by coverage in window 9:81038288-81038289
2012-10-07 18:04:56,753 - DEBUG - Taking top 8 variants by coverage in window 9:81114400-81114401
2012-10-07 18:04:56,931 - DEBUG - Taking top 8 variants by coverage in window 9:81118449-81118451
2012-10-07 18:04:57,017 - DEBUG - Taking top 8 variants by coverage in window 9:81118833-81118834
2012-10-07 18:04:57,086 - DEBUG - Taking top 8 variants by coverage in window 9:81119977-81119978
2012-10-07 18:04:57,266 - DEBUG - Taking top 8 variants by coverage in window 9:81122426-81122427
2012-10-07 18:04:57,328 - DEBUG - Taking top 8 variants by coverage in window 9:81122703-81122704
2012-10-07 18:04:57,715 - DEBUG - Taking top 8 variants by coverage in window 9:81126910-81126913
2012-10-07 18:04:58,307 - DEBUG - Taking top 8 variants by coverage in window 9:81136054-81136056
2012-10-07 18:04:58,781 - DEBUG - Taking top 8 variants by coverage in window 9:81143972-81143975
2012-10-07 18:04:59,068 - DEBUG - Taking top 8 variants by coverage in window 9:81153877-81153893
2012-10-07 18:05:00,371 - DEBUG - Taking top 8 variants by coverage in window 9:81182682-81182683
2012-10-07 18:05:00,437 - DEBUG - Taking top 8 variants by coverage in window 9:81182900-81182901
2012-10-07 18:05:00,945 - DEBUG - Taking top 8 variants by coverage in window 9:81189693-81189697
2012-10-07 18:05:00,989 - DEBUG - Taking top 8 variants by coverage in window 9:81189725-81189726
2012-10-07 18:05:01,105 - DEBUG - Taking top 8 variants by coverage in window 9:81190939-81190954
2012-10-07 18:05:01,436 - DEBUG - Taking top 8 variants by coverage in window 9:81198779-81198780
2012-10-07 18:05:01,506 - DEBUG - Taking top 8 variants by coverage in window 9:81200116-81200117
2012-10-07 18:05:02,060 - DEBUG - Taking top 8 variants by coverage in window 9:81209961-81209962
2012-10-07 18:05:02,412 - DEBUG - Taking top 8 variants by coverage in window 9:81214277-81214278
2012-10-07 18:05:02,499 - DEBUG - Taking top 8 variants by coverage in window 9:81215816-81215817
2012-10-07 18:05:02,633 - DEBUG - Taking top 8 variants by coverage in window 9:81218405-81218406
2012-10-07 18:05:02,807 - DEBUG - Taking top 8 variants by coverage in window 9:81219357-81219358
2012-10-07 18:05:03,208 - DEBUG - Taking top 8 variants by coverage in window 9:81228127-81228128
2012-10-07 18:05:03,377 - DEBUG - Taking top 8 variants by coverage in window 9:81232077-81232078
2012-10-07 18:05:03,423 - DEBUG - Taking top 8 variants by coverage in window 9:81232104-81232105
2012-10-07 18:05:03,460 - DEBUG - Taking top 8 variants by coverage in window 9:81232783-81232784
2012-10-07 18:05:04,522 - DEBUG - Taking top 8 variants by coverage in window 9:81260372-81260373
2012-10-07 18:05:04,734 - DEBUG - Taking top 8 variants by coverage in window 9:81264604-81264609
2012-10-07 18:05:04,809 - DEBUG - Taking top 8 variants by coverage in window 9:81265419-81265420
2012-10-07 18:05:05,030 - DEBUG - Taking top 8 variants by coverage in window 9:81272778-81272779
2012-10-07 18:05:05,406 - DEBUG - Taking top 8 variants by coverage in window 9:81284163-81284165
2012-10-07 18:05:05,418 - DEBUG - Taking top 8 variants by coverage in window 9:81284166-81284172
2012-10-07 18:05:05,919 - DEBUG - Taking top 8 variants by coverage in window 9:81292394-81292395
2012-10-07 18:05:06,319 - DEBUG - Taking top 8 variants by coverage in window 9:81302144-81302145
2012-10-07 18:05:06,697 - DEBUG - Taking top 8 variants by coverage in window 9:81305878-81305895
2012-10-07 18:05:07,126 - DEBUG - Taking top 8 variants by coverage in window 9:81308337-81308353
2012-10-07 18:05:09,376 - DEBUG - Taking top 8 variants by coverage in window 9:81366766-81366767
2012-10-07 18:05:09,725 - DEBUG - Taking top 8 variants by coverage in window 9:81373473-81373474
2012-10-07 18:05:09,838 - DEBUG - Taking top 8 variants by coverage in window 9:81374737-81374738
2012-10-07 18:05:10,859 - DEBUG - Taking top 8 variants by coverage in window 9:81394681-81394682
2012-10-07 18:05:11,264 - DEBUG - Taking top 8 variants by coverage in window 9:81401261-81401274
2012-10-07 18:05:11,339 - DEBUG - Taking top 8 variants by coverage in window 9:81401302-81401303
2012-10-07 18:05:11,838 - DEBUG - Taking top 8 variants by coverage in window 9:81406262-81406267
2012-10-07 18:05:11,908 - DEBUG - Taking top 8 variants by coverage in window 9:81406268-81406270
2012-10-07 18:05:13,514 - DEBUG - Taking top 8 variants by coverage in window 9:81441621-81441622
2012-10-07 18:05:13,885 - DEBUG - Taking top 8 variants by coverage in window 9:81448735-81448736
2012-10-07 18:05:14,420 - DEBUG - Taking top 8 variants by coverage in window 9:81455422-81455438
2012-10-07 18:05:14,551 - DEBUG - Taking top 8 variants by coverage in window 9:81458243-81458245
2012-10-07 18:05:14,926 - DEBUG - Taking top 8 variants by coverage in window 9:81466306-81466307
2012-10-07 18:05:15,135 - DEBUG - Taking top 8 variants by coverage in window 9:81469749-81469750
2012-10-07 18:05:15,189 - DEBUG - Taking top 8 variants by coverage in window 9:81469788-81469798
2012-10-07 18:05:15,396 - DEBUG - Taking top 8 variants by coverage in window 9:81470857-81470860
2012-10-07 18:05:15,593 - DEBUG - Taking top 8 variants by coverage in window 9:81472076-81472077
2012-10-07 18:05:15,896 - DEBUG - Taking top 8 variants by coverage in window 9:81475724-81475725
2012-10-07 18:05:15,905 - DEBUG - Taking top 8 variants by coverage in window 9:81475733-81475734
2012-10-07 18:05:16,901 - DEBUG - Taking top 8 variants by coverage in window 9:81495840-81495841
2012-10-07 18:05:17,176 - DEBUG - Taking top 8 variants by coverage in window 9:81503688-81503689
2012-10-07 18:05:18,716 - DEBUG - Taking top 8 variants by coverage in window 9:81546213-81546214
2012-10-07 18:05:20,029 - DEBUG - Taking top 8 variants by coverage in window 9:81572294-81572295
2012-10-07 18:05:20,351 - DEBUG - Taking top 8 variants by coverage in window 9:81572754-81572770
2012-10-07 18:05:20,382 - DEBUG - Taking top 8 variants by coverage in window 9:81572812-81572813
2012-10-07 18:05:21,170 - DEBUG - Taking top 8 variants by coverage in window 9:81586220-81586224
2012-10-07 18:05:22,086 - DEBUG - Taking top 8 variants by coverage in window 9:81605274-81605275
2012-10-07 18:05:24,197 - DEBUG - Taking top 8 variants by coverage in window 9:81640367-81640368
2012-10-07 18:05:24,815 - DEBUG - Taking top 8 variants by coverage in window 9:81648461-81648462
2012-10-07 18:05:25,299 - DEBUG - Taking top 8 variants by coverage in window 9:81652566-81652568
2012-10-07 18:05:26,003 - DEBUG - Taking top 8 variants by coverage in window 9:81660850-81660854
2012-10-07 18:05:26,353 - DEBUG - Taking top 8 variants by coverage in window 9:81665829-81665830
2012-10-07 18:05:26,406 - DEBUG - Taking top 8 variants by coverage in window 9:81666295-81666298
2012-10-07 18:05:27,323 - DEBUG - Taking top 8 variants by coverage in window 9:81679645-81679646
2012-10-07 18:05:27,637 - DEBUG - Taking top 8 variants by coverage in window 9:81685560-81685562
2012-10-07 18:05:27,661 - DEBUG - Taking top 8 variants by coverage in window 9:81685613-81685614
2012-10-07 18:05:31,080 - DEBUG - Taking top 8 variants by coverage in window 9:81740096-81740097
2012-10-07 18:05:31,430 - DEBUG - Taking top 8 variants by coverage in window 9:81749908-81749932
2012-10-07 18:05:33,375 - DEBUG - Taking top 8 variants by coverage in window 9:81759962-81759969
2012-10-07 18:05:34,101 - DEBUG - Taking top 8 variants by coverage in window 9:81768770-81768773
2012-10-07 18:05:34,563 - DEBUG - Taking top 8 variants by coverage in window 9:81775864-81775865
2012-10-07 18:05:34,900 - DEBUG - Taking top 8 variants by coverage in window 9:81782139-81782140
2012-10-07 18:05:35,228 - DEBUG - Taking top 8 variants by coverage in window 9:81785215-81785217
2012-10-07 18:05:35,403 - DEBUG - Taking top 8 variants by coverage in window 9:81786091-81786096
2012-10-07 18:05:36,706 - DEBUG - Taking top 8 variants by coverage in window 9:81815419-81815421
2012-10-07 18:05:37,189 - DEBUG - Taking top 8 variants by coverage in window 9:81819320-81819322
2012-10-07 18:05:37,777 - DEBUG - Taking top 8 variants by coverage in window 9:81830850-81830851
2012-10-07 18:05:38,594 - DEBUG - Taking top 8 variants by coverage in window 9:81840723-81840724
2012-10-07 18:05:39,673 - DEBUG - Taking top 8 variants by coverage in window 9:81857136-81857137
2012-10-07 18:05:40,957 - DEBUG - Taking top 8 variants by coverage in window 9:81872075-81872076
2012-10-07 18:05:41,003 - DEBUG - Taking top 8 variants by coverage in window 9:81872141-81872153
2012-10-07 18:05:43,647 - DEBUG - Taking top 8 variants by coverage in window 9:81909202-81909203
2012-10-07 18:05:43,759 - DEBUG - Taking top 8 variants by coverage in window 9:81910243-81910244
2012-10-07 18:05:44,552 - DEBUG - Taking top 8 variants by coverage in window 9:81920828-81920829
2012-10-07 18:05:45,394 - DEBUG - Taking top 8 variants by coverage in window 9:81931002-81931003
2012-10-07 18:05:45,557 - DEBUG - Taking top 8 variants by coverage in window 9:81934887-81934890
2012-10-07 18:05:45,772 - DEBUG - Taking top 8 variants by coverage in window 9:81935993-81935995
2012-10-07 18:05:46,835 - DEBUG - Taking top 8 variants by coverage in window 9:81943309-81943310
2012-10-07 18:05:47,525 - DEBUG - Taking top 8 variants by coverage in window 9:81948131-81948143
2012-10-07 18:05:47,879 - DEBUG - Taking top 8 variants by coverage in window 9:81950065-81950066
2012-10-07 18:05:48,642 - DEBUG - Taking top 8 variants by coverage in window 9:81957321-81957322
2012-10-07 18:05:48,698 - DEBUG - Taking top 8 variants by coverage in window 9:81957646-81957647
2012-10-07 18:05:49,636 - DEBUG - Taking top 8 variants by coverage in window 9:81970182-81970183
2012-10-07 18:05:50,709 - DEBUG - Taking top 8 variants by coverage in window 9:81985273-81985274
2012-10-07 18:05:50,883 - DEBUG - Taking top 8 variants by coverage in window 9:81987837-81987840
2012-10-07 18:05:52,461 - DEBUG - Read 82172 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 18:05:52,675 - DEBUG - Read 88038 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 18:05:52,907 - DEBUG - Read 102726 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 18:05:53,160 - DEBUG - Read 101002 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 18:05:53,404 - DEBUG - Read 100569 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 18:05:53,627 - DEBUG - Read 93540 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 18:05:53,861 - DEBUG - Read 99610 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 18:05:54,081 - DEBUG - Read 87023 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 18:05:54,287 - DEBUG - Read 82810 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 18:05:54,508 - DEBUG - Read 87366 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 18:05:54,781 - DEBUG - Read 95103 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 18:05:54,982 - DEBUG - Read 82749 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 18:05:55,192 - DEBUG - Read 83017 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 18:05:55,409 - DEBUG - Read 94306 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 18:05:55,649 - DEBUG - Read 101609 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 18:05:55,846 - DEBUG - Read 77303 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 18:05:56,071 - DEBUG - Read 97691 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 18:05:56,304 - DEBUG - Read 96165 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 18:05:56,490 - DEBUG - Read 76831 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 18:05:56,701 - DEBUG - Read 82698 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 18:05:56,790 - DEBUG - Detected 22215 variants in 82172 reads
2012-10-07 18:05:56,925 - DEBUG - Detected 28092 variants in 88038 reads
2012-10-07 18:05:57,105 - DEBUG - Detected 36519 variants in 102726 reads
2012-10-07 18:05:57,311 - DEBUG - Detected 44543 variants in 101002 reads
2012-10-07 18:05:57,513 - DEBUG - Detected 50755 variants in 100569 reads
2012-10-07 18:05:57,788 - DEBUG - Detected 57573 variants in 93540 reads
2012-10-07 18:05:58,084 - DEBUG - Detected 69210 variants in 99610 reads
2012-10-07 18:05:58,406 - DEBUG - Detected 74934 variants in 87023 reads
2012-10-07 18:05:58,767 - DEBUG - Detected 80046 variants in 82810 reads
2012-10-07 18:05:59,152 - DEBUG - Detected 85319 variants in 87366 reads
2012-10-07 18:05:59,570 - DEBUG - Detected 91077 variants in 95103 reads
2012-10-07 18:05:59,982 - DEBUG - Detected 94217 variants in 82749 reads
2012-10-07 18:06:00,464 - DEBUG - Detected 97960 variants in 83017 reads
2012-10-07 18:06:00,926 - DEBUG - Detected 102359 variants in 94306 reads
2012-10-07 18:06:01,430 - DEBUG - Detected 109196 variants in 101609 reads
2012-10-07 18:06:01,941 - DEBUG - Detected 112741 variants in 77303 reads
2012-10-07 18:06:02,490 - DEBUG - Detected 116256 variants in 97691 reads
2012-10-07 18:06:03,050 - DEBUG - Detected 119986 variants in 96165 reads
2012-10-07 18:06:03,663 - DEBUG - Detected 123500 variants in 76831 reads
2012-10-07 18:06:04,235 - DEBUG - Detected 127344 variants in 82698 reads
2012-10-07 18:06:06,140 - DEBUG - Taking top 8 variants by coverage in window 9:82020633-82020634
2012-10-07 18:06:06,153 - DEBUG - Taking top 8 variants by coverage in window 9:82020649-82020650
2012-10-07 18:06:06,207 - DEBUG - Taking top 8 variants by coverage in window 9:82020965-82020975
2012-10-07 18:06:07,439 - DEBUG - Taking top 8 variants by coverage in window 9:82054296-82054297
2012-10-07 18:06:08,452 - DEBUG - Taking top 8 variants by coverage in window 9:82073040-82073041
2012-10-07 18:06:09,406 - DEBUG - Taking top 8 variants by coverage in window 9:82087375-82087376
2012-10-07 18:06:09,579 - DEBUG - Taking top 8 variants by coverage in window 9:82088798-82088799
2012-10-07 18:06:10,752 - DEBUG - Taking top 8 variants by coverage in window 9:82101414-82101415
2012-10-07 18:06:10,839 - DEBUG - Taking top 8 variants by coverage in window 9:82101943-82101944
2012-10-07 18:06:11,224 - DEBUG - Taking top 8 variants by coverage in window 9:82105469-82105473
2012-10-07 18:06:11,851 - DEBUG - Taking top 8 variants by coverage in window 9:82112883-82112884
2012-10-07 18:06:13,199 - DEBUG - Taking top 8 variants by coverage in window 9:82132245-82132249
2012-10-07 18:06:13,922 - DEBUG - Taking top 8 variants by coverage in window 9:82135731-82135734
2012-10-07 18:06:13,988 - DEBUG - Taking top 8 variants by coverage in window 9:82136031-82136046
2012-10-07 18:06:14,715 - DEBUG - Taking top 8 variants by coverage in window 9:82144011-82144021
2012-10-07 18:06:17,086 - DEBUG - Taking top 8 variants by coverage in window 9:82184730-82184731
2012-10-07 18:06:17,561 - DEBUG - Taking top 8 variants by coverage in window 9:82194919-82194920
2012-10-07 18:06:17,832 - DEBUG - Taking top 8 variants by coverage in window 9:82198719-82198720
2012-10-07 18:06:17,895 - DEBUG - Taking top 8 variants by coverage in window 9:82198740-82198743
2012-10-07 18:06:18,414 - DEBUG - Taking top 8 variants by coverage in window 9:82202607-82202609
2012-10-07 18:06:18,463 - DEBUG - Taking top 8 variants by coverage in window 9:82202851-82202852
2012-10-07 18:06:18,484 - DEBUG - Taking top 8 variants by coverage in window 9:82202870-82202871
2012-10-07 18:06:18,494 - DEBUG - Taking top 8 variants by coverage in window 9:82202872-82202873
2012-10-07 18:06:18,838 - DEBUG - Taking top 8 variants by coverage in window 9:82206121-82206122
2012-10-07 18:06:19,045 - DEBUG - Taking top 8 variants by coverage in window 9:82208449-82208450
2012-10-07 18:06:19,580 - DEBUG - Taking top 8 variants by coverage in window 9:82216379-82216380
2012-10-07 18:06:21,127 - DEBUG - Taking top 8 variants by coverage in window 9:82236347-82236348
2012-10-07 18:06:21,162 - DEBUG - Taking top 8 variants by coverage in window 9:82236577-82236578
2012-10-07 18:06:21,270 - DEBUG - Taking top 8 variants by coverage in window 9:82236636-82236637
2012-10-07 18:06:21,633 - DEBUG - Taking top 8 variants by coverage in window 9:82241864-82241867
2012-10-07 18:06:22,150 - DEBUG - Taking top 8 variants by coverage in window 9:82245840-82245842
2012-10-07 18:06:22,385 - DEBUG - Taking top 8 variants by coverage in window 9:82254873-82254880
2012-10-07 18:06:22,846 - DEBUG - Taking top 8 variants by coverage in window 9:82264110-82264120
2012-10-07 18:06:22,993 - DEBUG - Taking top 8 variants by coverage in window 9:82266290-82266291
2012-10-07 18:06:24,662 - DEBUG - Taking top 8 variants by coverage in window 9:82285630-82285631
2012-10-07 18:06:24,958 - DEBUG - Taking top 8 variants by coverage in window 9:82288134-82288139
2012-10-07 18:06:25,316 - DEBUG - Taking top 8 variants by coverage in window 9:82291393-82291394
2012-10-07 18:06:25,331 - DEBUG - Taking top 8 variants by coverage in window 9:82291420-82291421
2012-10-07 18:06:26,155 - DEBUG - Taking top 8 variants by coverage in window 9:82301160-82301161
2012-10-07 18:06:26,179 - DEBUG - Taking top 8 variants by coverage in window 9:82301163-82301164
2012-10-07 18:06:26,774 - DEBUG - Taking top 8 variants by coverage in window 9:82307935-82307936
2012-10-07 18:06:26,814 - DEBUG - Taking top 8 variants by coverage in window 9:82308259-82308260
2012-10-07 18:06:26,996 - DEBUG - Taking top 8 variants by coverage in window 9:82311270-82311284
2012-10-07 18:06:28,504 - DEBUG - Taking top 8 variants by coverage in window 9:82330586-82330587
2012-10-07 18:06:33,455 - DEBUG - Taking top 8 variants by coverage in window 9:82396489-82396500
2012-10-07 18:06:33,475 - DEBUG - Taking top 8 variants by coverage in window 9:82396522-82396531
2012-10-07 18:06:34,029 - DEBUG - Taking top 8 variants by coverage in window 9:82410156-82410157
2012-10-07 18:06:34,230 - DEBUG - Taking top 8 variants by coverage in window 9:82413122-82413123
2012-10-07 18:06:34,481 - DEBUG - Taking top 8 variants by coverage in window 9:82418455-82418456
2012-10-07 18:06:34,655 - DEBUG - Taking top 8 variants by coverage in window 9:82420774-82420775
2012-10-07 18:06:35,774 - DEBUG - Taking top 8 variants by coverage in window 9:82438298-82438299
2012-10-07 18:06:35,967 - DEBUG - Taking top 8 variants by coverage in window 9:82440945-82440946
2012-10-07 18:06:35,978 - DEBUG - Taking top 8 variants by coverage in window 9:82440965-82440966
2012-10-07 18:06:36,472 - DEBUG - Taking top 8 variants by coverage in window 9:82445841-82445842
2012-10-07 18:06:36,713 - DEBUG - Taking top 8 variants by coverage in window 9:82450392-82450394
2012-10-07 18:06:36,749 - DEBUG - Taking top 8 variants by coverage in window 9:82450897-82450911
2012-10-07 18:06:36,812 - DEBUG - Taking top 8 variants by coverage in window 9:82451543-82451544
2012-10-07 18:06:36,979 - DEBUG - Taking top 8 variants by coverage in window 9:82454072-82454073
2012-10-07 18:06:37,152 - DEBUG - Taking top 8 variants by coverage in window 9:82457216-82457218
2012-10-07 18:06:37,401 - DEBUG - Taking top 8 variants by coverage in window 9:82465315-82465316
2012-10-07 18:06:38,005 - DEBUG - Taking top 8 variants by coverage in window 9:82472323-82472324
2012-10-07 18:06:38,188 - DEBUG - Taking top 8 variants by coverage in window 9:82472991-82472996
2012-10-07 18:06:38,226 - DEBUG - Taking top 8 variants by coverage in window 9:82472998-82473001
2012-10-07 18:06:39,805 - DEBUG - Taking top 8 variants by coverage in window 9:82494927-82494932
2012-10-07 18:06:40,971 - DEBUG - Taking top 8 variants by coverage in window 9:82505067-82505071
2012-10-07 18:06:41,498 - DEBUG - Taking top 8 variants by coverage in window 9:82506359-82506360
2012-10-07 18:06:41,513 - DEBUG - Taking top 8 variants by coverage in window 9:82506362-82506363
2012-10-07 18:06:41,676 - DEBUG - Taking top 8 variants by coverage in window 9:82507394-82507396
2012-10-07 18:06:42,411 - DEBUG - Taking top 8 variants by coverage in window 9:82509614-82509615
2012-10-07 18:06:42,644 - DEBUG - Taking top 8 variants by coverage in window 9:82511173-82511174
2012-10-07 18:06:45,591 - DEBUG - Taking top 8 variants by coverage in window 9:82535681-82535682
2012-10-07 18:06:45,693 - DEBUG - Taking top 8 variants by coverage in window 9:82535749-82535750
2012-10-07 18:06:45,723 - DEBUG - Taking top 8 variants by coverage in window 9:82535756-82535758
2012-10-07 18:06:46,790 - DEBUG - Taking top 8 variants by coverage in window 9:82545372-82545374
2012-10-07 18:06:48,111 - DEBUG - Taking top 8 variants by coverage in window 9:82559811-82559812
2012-10-07 18:06:49,658 - DEBUG - Taking top 8 variants by coverage in window 9:82575855-82575856
2012-10-07 18:06:49,746 - DEBUG - Taking top 8 variants by coverage in window 9:82576830-82576842
2012-10-07 18:06:49,916 - DEBUG - Taking top 8 variants by coverage in window 9:82578890-82578892
2012-10-07 18:06:50,193 - DEBUG - Taking top 8 variants by coverage in window 9:82581177-82581178
2012-10-07 18:06:51,046 - DEBUG - Taking top 8 variants by coverage in window 9:82592800-82592801
2012-10-07 18:06:51,156 - DEBUG - Taking top 8 variants by coverage in window 9:82594712-82594713
2012-10-07 18:06:51,605 - DEBUG - Taking top 8 variants by coverage in window 9:82604476-82604481
2012-10-07 18:06:51,639 - DEBUG - Taking top 8 variants by coverage in window 9:82604495-82604496
2012-10-07 18:06:51,975 - DEBUG - Taking top 8 variants by coverage in window 9:82612643-82612644
2012-10-07 18:06:54,056 - DEBUG - Taking top 8 variants by coverage in window 9:82636425-82636426
2012-10-07 18:06:56,415 - DEBUG - Taking top 8 variants by coverage in window 9:82661526-82661529
2012-10-07 18:06:59,965 - DEBUG - Taking top 8 variants by coverage in window 9:82717684-82717685
2012-10-07 18:07:00,286 - DEBUG - Taking top 8 variants by coverage in window 9:82721083-82721084
2012-10-07 18:07:01,666 - DEBUG - Taking top 8 variants by coverage in window 9:82738416-82738420
2012-10-07 18:07:03,805 - DEBUG - Taking top 8 variants by coverage in window 9:82750377-82750395
2012-10-07 18:07:03,826 - DEBUG - Taking top 8 variants by coverage in window 9:82750401-82750402
2012-10-07 18:07:06,118 - DEBUG - Taking top 8 variants by coverage in window 9:82815683-82815684
2012-10-07 18:07:06,587 - DEBUG - Taking top 8 variants by coverage in window 9:82833702-82833703
2012-10-07 18:07:07,159 - DEBUG - Taking top 8 variants by coverage in window 9:82857130-82857132
2012-10-07 18:07:08,077 - DEBUG - Taking top 8 variants by coverage in window 9:82880941-82880946
2012-10-07 18:07:08,662 - DEBUG - Taking top 8 variants by coverage in window 9:82889652-82889657
2012-10-07 18:07:08,755 - DEBUG - Taking top 8 variants by coverage in window 9:82890386-82890387
2012-10-07 18:07:10,217 - DEBUG - Taking top 8 variants by coverage in window 9:82918399-82918412
2012-10-07 18:07:12,012 - DEBUG - Taking top 8 variants by coverage in window 9:82942951-82942952
2012-10-07 18:07:12,199 - DEBUG - Taking top 8 variants by coverage in window 9:82944724-82944725
2012-10-07 18:07:12,219 - DEBUG - Taking top 8 variants by coverage in window 9:82944727-82944728
2012-10-07 18:07:12,542 - DEBUG - Taking top 8 variants by coverage in window 9:82947525-82947526
2012-10-07 18:07:12,556 - DEBUG - Taking top 8 variants by coverage in window 9:82947530-82947531
2012-10-07 18:07:12,651 - DEBUG - Taking top 8 variants by coverage in window 9:82948883-82948884
2012-10-07 18:07:12,984 - DEBUG - Taking top 8 variants by coverage in window 9:82956658-82956659
2012-10-07 18:07:13,979 - DEBUG - Taking top 8 variants by coverage in window 9:82974154-82974161
2012-10-07 18:07:15,503 - DEBUG - Taking top 8 variants by coverage in window 9:82988499-82988506
2012-10-07 18:07:15,656 - DEBUG - Taking top 8 variants by coverage in window 9:82988675-82988676
2012-10-07 18:07:16,025 - DEBUG - Taking top 8 variants by coverage in window 9:82991162-82991163
2012-10-07 18:07:16,626 - DEBUG - Taking top 8 variants by coverage in window 9:82997315-82997316
2012-10-07 18:07:16,636 - DEBUG - Taking top 8 variants by coverage in window 9:82997344-82997345
2012-10-07 18:07:17,661 - DEBUG - Read 91352 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 18:07:17,902 - DEBUG - Read 99511 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 18:07:18,163 - DEBUG - Read 115902 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 18:07:18,449 - DEBUG - Read 115199 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 18:07:18,725 - DEBUG - Read 110819 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 18:07:18,970 - DEBUG - Read 102758 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 18:07:19,227 - DEBUG - Read 110775 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 18:07:19,474 - DEBUG - Read 98784 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 18:07:19,707 - DEBUG - Read 94828 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 18:07:19,949 - DEBUG - Read 96579 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 18:07:20,209 - DEBUG - Read 107567 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 18:07:20,436 - DEBUG - Read 95066 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 18:07:20,674 - DEBUG - Read 96317 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 18:07:20,917 - DEBUG - Read 107926 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 18:07:21,186 - DEBUG - Read 115049 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 18:07:21,407 - DEBUG - Read 87360 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 18:07:21,657 - DEBUG - Read 110956 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 18:07:21,980 - DEBUG - Read 106151 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 18:07:22,196 - DEBUG - Read 90565 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 18:07:22,546 - DEBUG - Read 91893 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 18:07:22,650 - DEBUG - Detected 25121 variants in 91352 reads
2012-10-07 18:07:22,812 - DEBUG - Detected 33454 variants in 99511 reads
2012-10-07 18:07:23,023 - DEBUG - Detected 43509 variants in 115902 reads
2012-10-07 18:07:23,299 - DEBUG - Detected 52304 variants in 115199 reads
2012-10-07 18:07:23,572 - DEBUG - Detected 59382 variants in 110819 reads
2012-10-07 18:07:23,887 - DEBUG - Detected 66658 variants in 102758 reads
2012-10-07 18:07:24,247 - DEBUG - Detected 79720 variants in 110775 reads
2012-10-07 18:07:24,651 - DEBUG - Detected 85149 variants in 98784 reads
2012-10-07 18:07:25,079 - DEBUG - Detected 92292 variants in 94828 reads
2012-10-07 18:07:25,570 - DEBUG - Detected 96990 variants in 96579 reads
2012-10-07 18:07:26,060 - DEBUG - Detected 101958 variants in 107567 reads
2012-10-07 18:07:26,561 - DEBUG - Detected 106709 variants in 95066 reads
2012-10-07 18:07:27,089 - DEBUG - Detected 111058 variants in 96317 reads
2012-10-07 18:07:27,648 - DEBUG - Detected 115825 variants in 107926 reads
2012-10-07 18:07:28,240 - DEBUG - Detected 123762 variants in 115049 reads
2012-10-07 18:07:28,905 - DEBUG - Detected 128323 variants in 87360 reads
2012-10-07 18:07:29,547 - DEBUG - Detected 132040 variants in 110956 reads
2012-10-07 18:07:30,206 - DEBUG - Detected 136349 variants in 106151 reads
2012-10-07 18:07:30,874 - DEBUG - Detected 140464 variants in 90565 reads
2012-10-07 18:07:31,625 - DEBUG - Detected 144835 variants in 91893 reads
2012-10-07 18:07:33,055 - DEBUG - Taking top 8 variants by coverage in window 9:83006829-83006832
2012-10-07 18:07:33,382 - DEBUG - Taking top 8 variants by coverage in window 9:83010080-83010081
2012-10-07 18:07:33,449 - DEBUG - Taking top 8 variants by coverage in window 9:83010108-83010109
2012-10-07 18:07:34,672 - DEBUG - Taking top 8 variants by coverage in window 9:83023709-83023710
2012-10-07 18:07:35,174 - DEBUG - Taking top 8 variants by coverage in window 9:83028610-83028611
2012-10-07 18:07:35,815 - DEBUG - Taking top 8 variants by coverage in window 9:83041027-83041032
2012-10-07 18:07:36,611 - DEBUG - Taking top 8 variants by coverage in window 9:83043773-83043774
2012-10-07 18:07:37,015 - DEBUG - Taking top 8 variants by coverage in window 9:83050591-83050592
2012-10-07 18:07:38,967 - DEBUG - Taking top 8 variants by coverage in window 9:83080635-83080636
2012-10-07 18:07:39,609 - DEBUG - Taking top 8 variants by coverage in window 9:83089083-83089086
2012-10-07 18:07:41,735 - DEBUG - Taking top 8 variants by coverage in window 9:83109896-83109899
2012-10-07 18:07:41,794 - DEBUG - Taking top 8 variants by coverage in window 9:83109920-83109924
2012-10-07 18:07:43,120 - DEBUG - Taking top 8 variants by coverage in window 9:83130778-83130780
2012-10-07 18:07:43,267 - DEBUG - Taking top 8 variants by coverage in window 9:83131970-83131971
2012-10-07 18:07:44,272 - DEBUG - Taking top 8 variants by coverage in window 9:83147943-83147944
2012-10-07 18:07:44,481 - DEBUG - Taking top 8 variants by coverage in window 9:83149460-83149464
2012-10-07 18:07:44,489 - DEBUG - Taking top 8 variants by coverage in window 9:83149469-83149470
2012-10-07 18:07:44,501 - DEBUG - Taking top 8 variants by coverage in window 9:83149474-83149477
2012-10-07 18:07:44,691 - DEBUG - Taking top 8 variants by coverage in window 9:83151015-83151016
2012-10-07 18:07:45,182 - DEBUG - Taking top 8 variants by coverage in window 9:83156744-83156748
2012-10-07 18:07:45,271 - DEBUG - Taking top 8 variants by coverage in window 9:83157345-83157348
2012-10-07 18:07:45,367 - DEBUG - Taking top 8 variants by coverage in window 9:83158068-83158069
2012-10-07 18:07:45,636 - DEBUG - Taking top 8 variants by coverage in window 9:83159762-83159763
2012-10-07 18:07:46,423 - DEBUG - Taking top 8 variants by coverage in window 9:83166737-83166738
2012-10-07 18:07:46,631 - DEBUG - Taking top 8 variants by coverage in window 9:83168278-83168279
2012-10-07 18:07:47,150 - DEBUG - Taking top 8 variants by coverage in window 9:83170481-83170482
2012-10-07 18:07:47,351 - DEBUG - Taking top 8 variants by coverage in window 9:83172401-83172402
2012-10-07 18:07:47,921 - DEBUG - Taking top 8 variants by coverage in window 9:83179948-83179949
2012-10-07 18:07:48,254 - DEBUG - Taking top 8 variants by coverage in window 9:83183951-83183957
2012-10-07 18:07:48,317 - DEBUG - Taking top 8 variants by coverage in window 9:83185108-83185115
2012-10-07 18:07:48,726 - DEBUG - Taking top 8 variants by coverage in window 9:83188672-83188674
2012-10-07 18:07:50,589 - DEBUG - Taking top 8 variants by coverage in window 9:83215348-83215349
2012-10-07 18:07:50,652 - DEBUG - Taking top 8 variants by coverage in window 9:83216422-83216423
2012-10-07 18:07:51,137 - DEBUG - Taking top 8 variants by coverage in window 9:83225512-83225518
2012-10-07 18:07:52,758 - DEBUG - Taking top 8 variants by coverage in window 9:83238603-83238608
2012-10-07 18:07:52,970 - DEBUG - Taking top 8 variants by coverage in window 9:83239320-83239323
2012-10-07 18:07:53,579 - DEBUG - Taking top 8 variants by coverage in window 9:83246154-83246155
2012-10-07 18:07:53,669 - DEBUG - Taking top 8 variants by coverage in window 9:83246232-83246233
2012-10-07 18:07:53,783 - DEBUG - Taking top 8 variants by coverage in window 9:83246488-83246489
2012-10-07 18:07:54,158 - DEBUG - Taking top 8 variants by coverage in window 9:83252819-83252820
2012-10-07 18:07:54,989 - DEBUG - Taking top 8 variants by coverage in window 9:83266976-83266977
2012-10-07 18:07:55,167 - DEBUG - Taking top 8 variants by coverage in window 9:83268602-83268610
2012-10-07 18:07:55,353 - DEBUG - Taking top 8 variants by coverage in window 9:83271089-83271095
2012-10-07 18:07:55,359 - DEBUG - Taking top 8 variants by coverage in window 9:83271113-83271114
2012-10-07 18:07:55,691 - DEBUG - Taking top 8 variants by coverage in window 9:83275222-83275228
2012-10-07 18:07:55,781 - DEBUG - Taking top 8 variants by coverage in window 9:83275618-83275631
2012-10-07 18:07:56,070 - DEBUG - Taking top 8 variants by coverage in window 9:83282835-83282844
2012-10-07 18:07:56,140 - DEBUG - Taking top 8 variants by coverage in window 9:83284445-83284446
2012-10-07 18:07:56,350 - DEBUG - Taking top 8 variants by coverage in window 9:83290278-83290279
2012-10-07 18:07:56,674 - DEBUG - Taking top 8 variants by coverage in window 9:83299952-83299953
2012-10-07 18:07:56,718 - DEBUG - Taking top 8 variants by coverage in window 9:83300554-83300555
2012-10-07 18:07:57,313 - DEBUG - Taking top 8 variants by coverage in window 9:83305626-83305627
2012-10-07 18:07:57,694 - DEBUG - Taking top 8 variants by coverage in window 9:83309089-83309090
2012-10-07 18:07:58,048 - DEBUG - Taking top 8 variants by coverage in window 9:83313756-83313774
2012-10-07 18:07:58,241 - DEBUG - Taking top 8 variants by coverage in window 9:83317261-83317267
2012-10-07 18:07:58,758 - DEBUG - Taking top 8 variants by coverage in window 9:83324748-83324749
2012-10-07 18:07:59,587 - DEBUG - Taking top 8 variants by coverage in window 9:83333745-83333750
2012-10-07 18:08:00,189 - DEBUG - Taking top 8 variants by coverage in window 9:83340163-83340164
2012-10-07 18:08:00,334 - DEBUG - Taking top 8 variants by coverage in window 9:83340487-83340488
2012-10-07 18:08:00,857 - DEBUG - Taking top 8 variants by coverage in window 9:83347754-83347756
2012-10-07 18:08:01,735 - DEBUG - Taking top 8 variants by coverage in window 9:83354223-83354224
2012-10-07 18:08:01,963 - DEBUG - Taking top 8 variants by coverage in window 9:83361896-83361897
2012-10-07 18:08:03,978 - DEBUG - Taking top 8 variants by coverage in window 9:83384790-83384798
2012-10-07 18:08:04,498 - DEBUG - Taking top 8 variants by coverage in window 9:83389832-83389833
2012-10-07 18:08:06,237 - DEBUG - Taking top 8 variants by coverage in window 9:83408098-83408099
2012-10-07 18:08:06,936 - DEBUG - Taking top 8 variants by coverage in window 9:83420534-83420538
2012-10-07 18:08:07,437 - DEBUG - Taking top 8 variants by coverage in window 9:83425761-83425763
2012-10-07 18:08:07,624 - DEBUG - Taking top 8 variants by coverage in window 9:83426473-83426477
2012-10-07 18:08:08,605 - DEBUG - Taking top 8 variants by coverage in window 9:83435411-83435418
2012-10-07 18:08:08,912 - DEBUG - Taking top 8 variants by coverage in window 9:83439883-83439884
2012-10-07 18:08:09,165 - DEBUG - Taking top 8 variants by coverage in window 9:83443836-83443840
2012-10-07 18:08:09,290 - DEBUG - Taking top 8 variants by coverage in window 9:83445555-83445566
2012-10-07 18:08:09,602 - DEBUG - Taking top 8 variants by coverage in window 9:83447192-83447193
2012-10-07 18:08:09,723 - DEBUG - Taking top 8 variants by coverage in window 9:83448057-83448075
2012-10-07 18:08:09,813 - DEBUG - Taking top 8 variants by coverage in window 9:83448404-83448405
2012-10-07 18:08:09,899 - DEBUG - Taking top 8 variants by coverage in window 9:83448719-83448720
2012-10-07 18:08:09,995 - DEBUG - Taking top 8 variants by coverage in window 9:83448806-83448807
2012-10-07 18:08:10,089 - DEBUG - Taking top 8 variants by coverage in window 9:83449761-83449762
2012-10-07 18:08:10,341 - DEBUG - Taking top 8 variants by coverage in window 9:83451340-83451342
2012-10-07 18:08:10,591 - DEBUG - Taking top 8 variants by coverage in window 9:83452808-83452809
2012-10-07 18:08:10,606 - DEBUG - Taking top 8 variants by coverage in window 9:83452817-83452818
2012-10-07 18:08:10,721 - DEBUG - Taking top 8 variants by coverage in window 9:83453543-83453544
2012-10-07 18:08:10,759 - DEBUG - Taking top 8 variants by coverage in window 9:83453570-83453572
2012-10-07 18:08:10,909 - DEBUG - Taking top 8 variants by coverage in window 9:83453596-83453606
2012-10-07 18:08:11,450 - DEBUG - Taking top 8 variants by coverage in window 9:83457446-83457447
2012-10-07 18:08:11,624 - DEBUG - Taking top 8 variants by coverage in window 9:83458226-83458228
2012-10-07 18:08:11,674 - DEBUG - Taking top 8 variants by coverage in window 9:83458291-83458292
2012-10-07 18:08:12,072 - DEBUG - Taking top 8 variants by coverage in window 9:83459996-83459997
2012-10-07 18:08:12,565 - DEBUG - Taking top 8 variants by coverage in window 9:83464335-83464336
2012-10-07 18:08:12,708 - DEBUG - Taking top 8 variants by coverage in window 9:83464394-83464395
2012-10-07 18:08:14,740 - DEBUG - Taking top 8 variants by coverage in window 9:83481133-83481134
2012-10-07 18:08:15,016 - DEBUG - Taking top 8 variants by coverage in window 9:83484183-83484184
2012-10-07 18:08:15,289 - DEBUG - Taking top 8 variants by coverage in window 9:83487807-83487808
2012-10-07 18:08:15,302 - DEBUG - Taking top 8 variants by coverage in window 9:83487814-83487815
2012-10-07 18:08:15,310 - DEBUG - Taking top 8 variants by coverage in window 9:83487816-83487817
2012-10-07 18:08:16,177 - DEBUG - Taking top 8 variants by coverage in window 9:83498328-83498329
2012-10-07 18:08:16,232 - DEBUG - Taking top 8 variants by coverage in window 9:83498330-83498331
2012-10-07 18:08:16,436 - DEBUG - Taking top 8 variants by coverage in window 9:83500582-83500584
2012-10-07 18:08:16,612 - DEBUG - Taking top 8 variants by coverage in window 9:83501517-83501518
2012-10-07 18:08:17,863 - DEBUG - Taking top 8 variants by coverage in window 9:83511860-83511862
2012-10-07 18:08:17,894 - DEBUG - Taking top 8 variants by coverage in window 9:83512098-83512100
2012-10-07 18:08:19,708 - DEBUG - Taking top 8 variants by coverage in window 9:83533421-83533422
2012-10-07 18:08:19,986 - DEBUG - Taking top 8 variants by coverage in window 9:83535234-83535235
2012-10-07 18:08:20,294 - DEBUG - Taking top 8 variants by coverage in window 9:83536798-83536799
2012-10-07 18:08:20,313 - DEBUG - Taking top 8 variants by coverage in window 9:83536811-83536813
2012-10-07 18:08:20,356 - DEBUG - Taking top 8 variants by coverage in window 9:83537306-83537309
2012-10-07 18:08:22,158 - DEBUG - Taking top 8 variants by coverage in window 9:83537709-83537715
2012-10-07 18:08:24,017 - DEBUG - Taking top 8 variants by coverage in window 9:83557127-83557128
2012-10-07 18:08:24,749 - DEBUG - Taking top 8 variants by coverage in window 9:83565976-83565981
2012-10-07 18:08:24,931 - DEBUG - Taking top 8 variants by coverage in window 9:83567031-83567032
2012-10-07 18:08:26,499 - DEBUG - Taking top 8 variants by coverage in window 9:83582999-83583000
2012-10-07 18:08:26,651 - DEBUG - Taking top 8 variants by coverage in window 9:83583314-83583315
2012-10-07 18:08:26,672 - DEBUG - Taking top 8 variants by coverage in window 9:83583330-83583331
2012-10-07 18:08:27,393 - DEBUG - Taking top 8 variants by coverage in window 9:83589385-83589386
2012-10-07 18:08:27,432 - DEBUG - Taking top 8 variants by coverage in window 9:83589387-83589388
2012-10-07 18:08:27,868 - DEBUG - Taking top 8 variants by coverage in window 9:83591623-83591624
2012-10-07 18:08:27,892 - DEBUG - Taking top 8 variants by coverage in window 9:83591628-83591629
2012-10-07 18:08:28,465 - DEBUG - Taking top 8 variants by coverage in window 9:83595877-83595880
2012-10-07 18:08:28,525 - DEBUG - Taking top 8 variants by coverage in window 9:83596180-83596197
2012-10-07 18:08:28,807 - DEBUG - Taking top 8 variants by coverage in window 9:83598706-83598719
2012-10-07 18:08:30,381 - DEBUG - Taking top 8 variants by coverage in window 9:83615880-83615886
2012-10-07 18:08:30,803 - DEBUG - Taking top 8 variants by coverage in window 9:83618149-83618150
2012-10-07 18:08:31,393 - DEBUG - Taking top 8 variants by coverage in window 9:83626722-83626723
2012-10-07 18:08:31,422 - DEBUG - Taking top 8 variants by coverage in window 9:83626923-83626924
2012-10-07 18:08:31,605 - DEBUG - Taking top 8 variants by coverage in window 9:83629090-83629091
2012-10-07 18:08:32,477 - DEBUG - Taking top 8 variants by coverage in window 9:83640737-83640743
2012-10-07 18:08:33,005 - DEBUG - Taking top 8 variants by coverage in window 9:83649243-83649244
2012-10-07 18:08:33,398 - DEBUG - Taking top 8 variants by coverage in window 9:83653892-83653893
2012-10-07 18:08:33,423 - DEBUG - Taking top 8 variants by coverage in window 9:83653914-83653915
2012-10-07 18:08:33,604 - DEBUG - Taking top 8 variants by coverage in window 9:83656426-83656437
2012-10-07 18:08:33,819 - DEBUG - Taking top 8 variants by coverage in window 9:83659470-83659484
2012-10-07 18:08:33,912 - DEBUG - Taking top 8 variants by coverage in window 9:83661191-83661192
2012-10-07 18:08:34,314 - DEBUG - Taking top 8 variants by coverage in window 9:83664749-83664750
2012-10-07 18:08:36,057 - DEBUG - Taking top 8 variants by coverage in window 9:83686220-83686222
2012-10-07 18:08:36,102 - DEBUG - Taking top 8 variants by coverage in window 9:83686435-83686436
2012-10-07 18:08:36,702 - DEBUG - Taking top 8 variants by coverage in window 9:83691687-83691690
2012-10-07 18:08:36,722 - DEBUG - Taking top 8 variants by coverage in window 9:83691697-83691698
2012-10-07 18:08:36,856 - DEBUG - Taking top 8 variants by coverage in window 9:83692072-83692073
2012-10-07 18:08:36,912 - DEBUG - Taking top 8 variants by coverage in window 9:83692272-83692273
2012-10-07 18:08:36,955 - DEBUG - Taking top 8 variants by coverage in window 9:83692774-83692775
2012-10-07 18:08:37,071 - DEBUG - Taking top 8 variants by coverage in window 9:83693945-83693946
2012-10-07 18:08:37,386 - DEBUG - Taking top 8 variants by coverage in window 9:83697542-83697543
2012-10-07 18:08:37,687 - DEBUG - Taking top 8 variants by coverage in window 9:83703064-83703065
2012-10-07 18:08:37,900 - DEBUG - Taking top 8 variants by coverage in window 9:83705269-83705270
2012-10-07 18:08:38,226 - DEBUG - Taking top 8 variants by coverage in window 9:83708848-83708849
2012-10-07 18:08:38,574 - DEBUG - Taking top 8 variants by coverage in window 9:83713306-83713307
2012-10-07 18:08:38,677 - DEBUG - Taking top 8 variants by coverage in window 9:83713976-83713977
2012-10-07 18:08:39,367 - DEBUG - Taking top 8 variants by coverage in window 9:83723907-83723908
2012-10-07 18:08:39,393 - DEBUG - Taking top 8 variants by coverage in window 9:83724097-83724099
2012-10-07 18:08:39,793 - DEBUG - Taking top 8 variants by coverage in window 9:83729998-83729999
2012-10-07 18:08:39,979 - DEBUG - Taking top 8 variants by coverage in window 9:83731900-83731901
2012-10-07 18:08:40,295 - DEBUG - Taking top 8 variants by coverage in window 9:83736432-83736433
2012-10-07 18:08:41,438 - DEBUG - Taking top 8 variants by coverage in window 9:83754502-83754503
2012-10-07 18:08:42,626 - DEBUG - Taking top 8 variants by coverage in window 9:83769443-83769444
2012-10-07 18:08:42,667 - DEBUG - Taking top 8 variants by coverage in window 9:83769520-83769521
2012-10-07 18:08:42,847 - DEBUG - Taking top 8 variants by coverage in window 9:83770467-83770468
2012-10-07 18:08:43,482 - DEBUG - Taking top 8 variants by coverage in window 9:83778070-83778071
2012-10-07 18:08:43,550 - DEBUG - Taking top 8 variants by coverage in window 9:83778683-83778684
2012-10-07 18:08:43,723 - DEBUG - Taking top 8 variants by coverage in window 9:83781044-83781053
2012-10-07 18:08:44,178 - DEBUG - Taking top 8 variants by coverage in window 9:83787296-83787297
2012-10-07 18:08:44,202 - DEBUG - Taking top 8 variants by coverage in window 9:83787304-83787305
2012-10-07 18:08:44,326 - DEBUG - Taking top 8 variants by coverage in window 9:83788528-83788529
2012-10-07 18:08:44,675 - DEBUG - Taking top 8 variants by coverage in window 9:83796897-83796898
2012-10-07 18:08:44,688 - DEBUG - Taking top 8 variants by coverage in window 9:83796930-83796931
2012-10-07 18:08:45,724 - DEBUG - Taking top 8 variants by coverage in window 9:83816530-83816532
2012-10-07 18:08:45,973 - DEBUG - Taking top 8 variants by coverage in window 9:83821409-83821410
2012-10-07 18:08:45,986 - DEBUG - Taking top 8 variants by coverage in window 9:83821428-83821429
2012-10-07 18:08:46,919 - DEBUG - Taking top 8 variants by coverage in window 9:83835655-83835658
2012-10-07 18:08:47,023 - DEBUG - Taking top 8 variants by coverage in window 9:83836152-83836153
2012-10-07 18:08:47,060 - DEBUG - Taking top 8 variants by coverage in window 9:83843474-83843475
2012-10-07 18:08:47,236 - DEBUG - Taking top 8 variants by coverage in window 9:83846354-83846379
2012-10-07 18:08:47,375 - DEBUG - Taking top 8 variants by coverage in window 9:83847822-83847823
2012-10-07 18:08:47,894 - DEBUG - Taking top 8 variants by coverage in window 9:83853156-83853157
2012-10-07 18:08:48,072 - DEBUG - Taking top 8 variants by coverage in window 9:83855546-83855547
2012-10-07 18:08:48,393 - DEBUG - Taking top 8 variants by coverage in window 9:83860135-83860136
2012-10-07 18:08:48,767 - DEBUG - Taking top 8 variants by coverage in window 9:83864496-83864497
2012-10-07 18:08:49,186 - DEBUG - Taking top 8 variants by coverage in window 9:83869399-83869400
2012-10-07 18:08:49,401 - DEBUG - Taking top 8 variants by coverage in window 9:83870961-83870962
2012-10-07 18:08:49,422 - DEBUG - Taking top 8 variants by coverage in window 9:83870965-83870968
2012-10-07 18:08:49,594 - DEBUG - Taking top 8 variants by coverage in window 9:83872026-83872027
2012-10-07 18:08:49,612 - DEBUG - Taking top 8 variants by coverage in window 9:83872031-83872035
2012-10-07 18:08:49,962 - DEBUG - Taking top 8 variants by coverage in window 9:83872577-83872578
2012-10-07 18:08:50,159 - DEBUG - Taking top 8 variants by coverage in window 9:83874000-83874001
2012-10-07 18:08:50,259 - DEBUG - Taking top 8 variants by coverage in window 9:83876031-83876050
2012-10-07 18:08:50,279 - DEBUG - Taking top 8 variants by coverage in window 9:83876053-83876054
2012-10-07 18:08:50,296 - DEBUG - Taking top 8 variants by coverage in window 9:83876054-83876055
2012-10-07 18:08:50,370 - DEBUG - Taking top 8 variants by coverage in window 9:83876079-83876080
2012-10-07 18:08:51,046 - DEBUG - Taking top 8 variants by coverage in window 9:83885206-83885208
2012-10-07 18:08:51,223 - DEBUG - Taking top 8 variants by coverage in window 9:83886073-83886074
2012-10-07 18:08:52,117 - DEBUG - Taking top 8 variants by coverage in window 9:83906981-83906982
2012-10-07 18:08:52,702 - DEBUG - Taking top 8 variants by coverage in window 9:83915438-83915439
2012-10-07 18:08:54,404 - DEBUG - Taking top 8 variants by coverage in window 9:83936858-83936859
2012-10-07 18:08:54,651 - DEBUG - Taking top 8 variants by coverage in window 9:83940544-83940545
2012-10-07 18:08:54,816 - DEBUG - Taking top 8 variants by coverage in window 9:83943023-83943024
2012-10-07 18:08:55,074 - DEBUG - Taking top 8 variants by coverage in window 9:83947075-83947076
2012-10-07 18:08:55,128 - DEBUG - Taking top 8 variants by coverage in window 9:83947602-83947605
2012-10-07 18:08:56,623 - DEBUG - Taking top 8 variants by coverage in window 9:83977577-83977578
2012-10-07 18:08:57,495 - DEBUG - Taking top 8 variants by coverage in window 9:83993709-83993710
2012-10-07 18:08:59,105 - DEBUG - Read 81982 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 18:08:59,318 - DEBUG - Read 87962 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 18:08:59,553 - DEBUG - Read 105058 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 18:08:59,805 - DEBUG - Read 102665 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 18:09:00,052 - DEBUG - Read 99557 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 18:09:00,275 - DEBUG - Read 94378 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 18:09:00,508 - DEBUG - Read 99994 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 18:09:00,729 - DEBUG - Read 87242 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 18:09:00,935 - DEBUG - Read 83406 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 18:09:01,154 - DEBUG - Read 88309 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 18:09:01,386 - DEBUG - Read 96160 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 18:09:01,585 - DEBUG - Read 83251 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 18:09:01,792 - DEBUG - Read 83996 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 18:09:02,007 - DEBUG - Read 94645 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 18:09:02,245 - DEBUG - Read 102496 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 18:09:02,443 - DEBUG - Read 78276 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 18:09:02,671 - DEBUG - Read 99330 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 18:09:02,905 - DEBUG - Read 97258 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 18:09:03,091 - DEBUG - Read 76885 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 18:09:03,301 - DEBUG - Read 82978 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 18:09:03,382 - DEBUG - Detected 18645 variants in 81982 reads
2012-10-07 18:09:03,511 - DEBUG - Detected 26539 variants in 87962 reads
2012-10-07 18:09:03,680 - DEBUG - Detected 33870 variants in 105058 reads
2012-10-07 18:09:03,874 - DEBUG - Detected 39819 variants in 102665 reads
2012-10-07 18:09:04,107 - DEBUG - Detected 45253 variants in 99557 reads
2012-10-07 18:09:04,338 - DEBUG - Detected 49672 variants in 94378 reads
2012-10-07 18:09:04,604 - DEBUG - Detected 63076 variants in 99994 reads
2012-10-07 18:09:04,913 - DEBUG - Detected 68075 variants in 87242 reads
2012-10-07 18:09:05,238 - DEBUG - Detected 73090 variants in 83406 reads
2012-10-07 18:09:05,592 - DEBUG - Detected 76889 variants in 88309 reads
2012-10-07 18:09:05,971 - DEBUG - Detected 81063 variants in 96160 reads
2012-10-07 18:09:06,356 - DEBUG - Detected 84100 variants in 83251 reads
2012-10-07 18:09:06,791 - DEBUG - Detected 87302 variants in 83996 reads
2012-10-07 18:09:07,213 - DEBUG - Detected 90893 variants in 94645 reads
2012-10-07 18:09:07,654 - DEBUG - Detected 97094 variants in 102496 reads
2012-10-07 18:09:08,103 - DEBUG - Detected 100306 variants in 78276 reads
2012-10-07 18:09:08,586 - DEBUG - Detected 103648 variants in 99330 reads
2012-10-07 18:09:09,079 - DEBUG - Detected 107401 variants in 97258 reads
2012-10-07 18:09:09,571 - DEBUG - Detected 110637 variants in 76885 reads
2012-10-07 18:09:10,126 - DEBUG - Detected 114477 variants in 82978 reads
2012-10-07 18:09:11,345 - DEBUG - Taking top 8 variants by coverage in window 9:84003177-84003178
2012-10-07 18:09:11,980 - DEBUG - Taking top 8 variants by coverage in window 9:84011539-84011540
2012-10-07 18:09:12,144 - DEBUG - Taking top 8 variants by coverage in window 9:84012244-84012245
2012-10-07 18:09:12,876 - DEBUG - Taking top 8 variants by coverage in window 9:84023471-84023472
2012-10-07 18:09:13,108 - DEBUG - Taking top 8 variants by coverage in window 9:84026001-84026002
2012-10-07 18:09:13,409 - DEBUG - Taking top 8 variants by coverage in window 9:84031938-84031945
2012-10-07 18:09:14,437 - DEBUG - Taking top 8 variants by coverage in window 9:84046546-84046547
2012-10-07 18:09:14,491 - DEBUG - Taking top 8 variants by coverage in window 9:84047640-84047641
2012-10-07 18:09:15,005 - DEBUG - Taking top 8 variants by coverage in window 9:84052707-84052708
2012-10-07 18:09:16,510 - DEBUG - Taking top 8 variants by coverage in window 9:84081946-84081947
2012-10-07 18:09:16,696 - DEBUG - Taking top 8 variants by coverage in window 9:84083972-84083973
2012-10-07 18:09:17,743 - DEBUG - Taking top 8 variants by coverage in window 9:84106818-84106819
2012-10-07 18:09:19,085 - DEBUG - Taking top 8 variants by coverage in window 9:84147939-84147940
2012-10-07 18:09:19,313 - DEBUG - Taking top 8 variants by coverage in window 9:84157458-84157461
2012-10-07 18:09:20,228 - DEBUG - Taking top 8 variants by coverage in window 9:84176720-84176732
2012-10-07 18:09:20,691 - DEBUG - Taking top 8 variants by coverage in window 9:84184290-84184293
2012-10-07 18:09:21,000 - DEBUG - Taking top 8 variants by coverage in window 9:84188167-84188171
2012-10-07 18:09:21,211 - DEBUG - Taking top 8 variants by coverage in window 9:84188943-84188944
2012-10-07 18:09:22,023 - DEBUG - Taking top 8 variants by coverage in window 9:84204420-84204421
2012-10-07 18:09:22,046 - DEBUG - Taking top 8 variants by coverage in window 9:84204442-84204443
2012-10-07 18:09:22,123 - DEBUG - Taking top 8 variants by coverage in window 9:84205024-84205025
2012-10-07 18:09:22,768 - DEBUG - Taking top 8 variants by coverage in window 9:84210698-84210699
2012-10-07 18:09:23,012 - DEBUG - Taking top 8 variants by coverage in window 9:84214710-84214713
2012-10-07 18:09:23,424 - DEBUG - Taking top 8 variants by coverage in window 9:84219953-84219954
2012-10-07 18:09:23,475 - DEBUG - Taking top 8 variants by coverage in window 9:84220653-84220654
2012-10-07 18:09:23,495 - DEBUG - Taking top 8 variants by coverage in window 9:84220835-84220836
2012-10-07 18:09:23,820 - DEBUG - Taking top 8 variants by coverage in window 9:84224685-84224686
2012-10-07 18:09:24,447 - DEBUG - Taking top 8 variants by coverage in window 9:84235202-84235203
2012-10-07 18:09:25,056 - DEBUG - Taking top 8 variants by coverage in window 9:84247096-84247097
2012-10-07 18:09:25,345 - DEBUG - Taking top 8 variants by coverage in window 9:84252313-84252314
2012-10-07 18:09:25,623 - DEBUG - Taking top 8 variants by coverage in window 9:84257873-84257874
2012-10-07 18:09:25,648 - DEBUG - Taking top 8 variants by coverage in window 9:84257876-84257877
2012-10-07 18:09:25,987 - DEBUG - Taking top 8 variants by coverage in window 9:84267329-84267331
2012-10-07 18:09:26,001 - DEBUG - Taking top 8 variants by coverage in window 9:84267335-84267344
2012-10-07 18:09:26,134 - DEBUG - Taking top 8 variants by coverage in window 9:84267347-84267348
2012-10-07 18:09:26,726 - DEBUG - Taking top 8 variants by coverage in window 9:84276767-84276769
2012-10-07 18:09:28,662 - DEBUG - Taking top 8 variants by coverage in window 9:84306026-84306027
2012-10-07 18:09:29,386 - DEBUG - Taking top 8 variants by coverage in window 9:84318425-84318429
2012-10-07 18:09:29,543 - DEBUG - Taking top 8 variants by coverage in window 9:84319740-84319742
2012-10-07 18:09:29,957 - DEBUG - Taking top 8 variants by coverage in window 9:84325314-84325316
2012-10-07 18:09:30,025 - DEBUG - Taking top 8 variants by coverage in window 9:84325530-84325531
2012-10-07 18:09:30,141 - DEBUG - Taking top 8 variants by coverage in window 9:84327520-84327522
2012-10-07 18:09:30,358 - DEBUG - Taking top 8 variants by coverage in window 9:84332864-84332866
2012-10-07 18:09:30,674 - DEBUG - Taking top 8 variants by coverage in window 9:84341374-84341375
2012-10-07 18:09:31,021 - DEBUG - Taking top 8 variants by coverage in window 9:84349342-84349343
2012-10-07 18:09:31,042 - DEBUG - Taking top 8 variants by coverage in window 9:84349346-84349347
2012-10-07 18:09:33,053 - DEBUG - Taking top 8 variants by coverage in window 9:84392589-84392590
2012-10-07 18:09:33,621 - DEBUG - Taking top 8 variants by coverage in window 9:84400705-84400706
2012-10-07 18:09:34,098 - DEBUG - Taking top 8 variants by coverage in window 9:84407082-84407083
2012-10-07 18:09:34,254 - DEBUG - Taking top 8 variants by coverage in window 9:84411016-84411017
2012-10-07 18:09:34,305 - DEBUG - Taking top 8 variants by coverage in window 9:84411072-84411073
2012-10-07 18:09:34,473 - DEBUG - Taking top 8 variants by coverage in window 9:84413058-84413059
2012-10-07 18:09:34,673 - DEBUG - Taking top 8 variants by coverage in window 9:84415677-84415678
2012-10-07 18:09:34,937 - DEBUG - Taking top 8 variants by coverage in window 9:84419230-84419231
2012-10-07 18:09:35,288 - DEBUG - Taking top 8 variants by coverage in window 9:84423403-84423412
2012-10-07 18:09:36,655 - DEBUG - Taking top 8 variants by coverage in window 9:84444876-84444877
2012-10-07 18:09:37,158 - DEBUG - Taking top 8 variants by coverage in window 9:84452691-84452694
2012-10-07 18:09:37,370 - DEBUG - Taking top 8 variants by coverage in window 9:84452872-84452873
2012-10-07 18:09:37,950 - DEBUG - Taking top 8 variants by coverage in window 9:84460564-84460567
2012-10-07 18:09:38,249 - DEBUG - Taking top 8 variants by coverage in window 9:84464009-84464010
2012-10-07 18:09:38,270 - DEBUG - Taking top 8 variants by coverage in window 9:84464021-84464026
2012-10-07 18:09:39,326 - DEBUG - Taking top 8 variants by coverage in window 9:84482548-84482549
2012-10-07 18:09:40,395 - DEBUG - Taking top 8 variants by coverage in window 9:84502071-84502081
2012-10-07 18:09:40,559 - DEBUG - Taking top 8 variants by coverage in window 9:84505122-84505123
2012-10-07 18:09:42,712 - DEBUG - Taking top 8 variants by coverage in window 9:84547523-84547524
2012-10-07 18:09:42,894 - DEBUG - Taking top 8 variants by coverage in window 9:84548704-84548712
2012-10-07 18:09:42,927 - DEBUG - Taking top 8 variants by coverage in window 9:84548753-84548754
2012-10-07 18:09:44,263 - DEBUG - Taking top 8 variants by coverage in window 9:84565309-84565310
2012-10-07 18:09:44,966 - DEBUG - Taking top 8 variants by coverage in window 9:84586923-84586924
2012-10-07 18:09:45,318 - DEBUG - Taking top 8 variants by coverage in window 9:84591919-84591921
2012-10-07 18:09:45,381 - DEBUG - Taking top 8 variants by coverage in window 9:84592250-84592251
2012-10-07 18:09:45,449 - DEBUG - Taking top 8 variants by coverage in window 9:84592924-84592925
2012-10-07 18:09:46,468 - DEBUG - Taking top 8 variants by coverage in window 9:84619790-84619791
2012-10-07 18:09:47,434 - DEBUG - Taking top 8 variants by coverage in window 9:84645872-84645873
2012-10-07 18:09:47,948 - DEBUG - Taking top 8 variants by coverage in window 9:84653144-84653146
2012-10-07 18:09:48,013 - DEBUG - Taking top 8 variants by coverage in window 9:84653655-84653675
2012-10-07 18:09:48,213 - DEBUG - Taking top 8 variants by coverage in window 9:84658237-84658241
2012-10-07 18:09:48,692 - DEBUG - Taking top 8 variants by coverage in window 9:84660810-84660812
2012-10-07 18:09:48,701 - DEBUG - Taking top 8 variants by coverage in window 9:84662178-84662179
2012-10-07 18:09:49,304 - DEBUG - Taking top 8 variants by coverage in window 9:84669420-84669421
2012-10-07 18:09:49,434 - DEBUG - Taking top 8 variants by coverage in window 9:84675023-84675024
2012-10-07 18:09:49,453 - DEBUG - Taking top 8 variants by coverage in window 9:84675025-84675026
2012-10-07 18:09:49,676 - DEBUG - Taking top 8 variants by coverage in window 9:84681633-84681637
2012-10-07 18:09:49,993 - DEBUG - Taking top 8 variants by coverage in window 9:84689839-84689840
2012-10-07 18:09:51,185 - DEBUG - Taking top 8 variants by coverage in window 9:84711095-84711098
2012-10-07 18:09:51,263 - DEBUG - Taking top 8 variants by coverage in window 9:84711884-84711885
2012-10-07 18:09:52,149 - DEBUG - Taking top 8 variants by coverage in window 9:84724935-84724936
2012-10-07 18:09:52,221 - DEBUG - Taking top 8 variants by coverage in window 9:84726782-84726783
2012-10-07 18:09:52,253 - DEBUG - Taking top 8 variants by coverage in window 9:84727596-84727597
2012-10-07 18:09:52,629 - DEBUG - Taking top 8 variants by coverage in window 9:84739162-84739163
2012-10-07 18:09:52,703 - DEBUG - Taking top 8 variants by coverage in window 9:84739971-84739975
2012-10-07 18:09:53,868 - DEBUG - Taking top 8 variants by coverage in window 9:84759216-84759218
2012-10-07 18:09:54,226 - DEBUG - Taking top 8 variants by coverage in window 9:84767016-84767018
2012-10-07 18:09:54,523 - DEBUG - Taking top 8 variants by coverage in window 9:84770657-84770658
2012-10-07 18:09:54,686 - DEBUG - Taking top 8 variants by coverage in window 9:84774110-84774111
2012-10-07 18:09:54,978 - DEBUG - Taking top 8 variants by coverage in window 9:84777540-84777541
2012-10-07 18:09:55,062 - DEBUG - Taking top 8 variants by coverage in window 9:84784466-84784467
2012-10-07 18:09:57,937 - DEBUG - Taking top 8 variants by coverage in window 9:84854711-84854712
2012-10-07 18:09:58,429 - DEBUG - Taking top 8 variants by coverage in window 9:84863408-84863409
2012-10-07 18:09:59,604 - DEBUG - Taking top 8 variants by coverage in window 9:84889586-84889587
2012-10-07 18:09:59,848 - DEBUG - Taking top 8 variants by coverage in window 9:84894957-84894959
2012-10-07 18:09:59,869 - DEBUG - Taking top 8 variants by coverage in window 9:84894971-84894973
2012-10-07 18:10:00,037 - DEBUG - Taking top 8 variants by coverage in window 9:84895750-84895752
2012-10-07 18:10:00,793 - DEBUG - Taking top 8 variants by coverage in window 9:84902317-84902318
2012-10-07 18:10:01,197 - DEBUG - Taking top 8 variants by coverage in window 9:84910779-84910780
2012-10-07 18:10:02,001 - DEBUG - Taking top 8 variants by coverage in window 9:84928092-84928093
2012-10-07 18:10:02,581 - DEBUG - Taking top 8 variants by coverage in window 9:84941487-84941488
2012-10-07 18:10:03,340 - DEBUG - Taking top 8 variants by coverage in window 9:84963004-84963005
2012-10-07 18:10:04,069 - DEBUG - Taking top 8 variants by coverage in window 9:84985875-84985879
2012-10-07 18:10:04,232 - DEBUG - Taking top 8 variants by coverage in window 9:84988552-84988567
2012-10-07 18:10:04,391 - DEBUG - Taking top 8 variants by coverage in window 9:84990403-84990404
2012-10-07 18:10:05,445 - INFO - Processing region 9:85000000-86000000
2012-10-07 18:10:05,655 - DEBUG - Read 90711 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 18:10:05,882 - DEBUG - Read 97858 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 18:10:06,128 - DEBUG - Read 114890 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 18:10:06,400 - DEBUG - Read 114370 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 18:10:06,660 - DEBUG - Read 109546 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 18:10:06,893 - DEBUG - Read 103020 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 18:10:07,140 - DEBUG - Read 110803 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 18:10:07,374 - DEBUG - Read 97080 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 18:10:07,596 - DEBUG - Read 93783 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 18:10:07,827 - DEBUG - Read 96903 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 18:10:08,070 - DEBUG - Read 105274 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 18:10:08,284 - DEBUG - Read 93059 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 18:10:08,507 - DEBUG - Read 94404 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 18:10:08,738 - DEBUG - Read 105497 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 18:10:08,993 - DEBUG - Read 115044 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 18:10:09,204 - DEBUG - Read 86648 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 18:10:09,441 - DEBUG - Read 109263 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 18:10:09,685 - DEBUG - Read 106227 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 18:10:09,888 - DEBUG - Read 88064 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 18:10:10,113 - DEBUG - Read 91673 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 18:10:10,204 - DEBUG - Detected 22341 variants in 90711 reads
2012-10-07 18:10:10,350 - DEBUG - Detected 31526 variants in 97858 reads
2012-10-07 18:10:10,536 - DEBUG - Detected 38899 variants in 114890 reads
2012-10-07 18:10:10,768 - DEBUG - Detected 47203 variants in 114370 reads
2012-10-07 18:10:11,029 - DEBUG - Detected 53331 variants in 109546 reads
2012-10-07 18:10:11,313 - DEBUG - Detected 58566 variants in 103020 reads
2012-10-07 18:10:11,664 - DEBUG - Detected 70875 variants in 110803 reads
2012-10-07 18:10:12,025 - DEBUG - Detected 75491 variants in 97080 reads
2012-10-07 18:10:12,402 - DEBUG - Detected 81860 variants in 93783 reads
2012-10-07 18:10:12,814 - DEBUG - Detected 86632 variants in 96903 reads
2012-10-07 18:10:13,260 - DEBUG - Detected 93341 variants in 105274 reads
2012-10-07 18:10:13,721 - DEBUG - Detected 96916 variants in 93059 reads
2012-10-07 18:10:14,188 - DEBUG - Detected 100898 variants in 94404 reads
2012-10-07 18:10:14,732 - DEBUG - Detected 104885 variants in 105497 reads
2012-10-07 18:10:15,263 - DEBUG - Detected 111661 variants in 115044 reads
2012-10-07 18:10:15,806 - DEBUG - Detected 115304 variants in 86648 reads
2012-10-07 18:10:16,388 - DEBUG - Detected 118771 variants in 109263 reads
2012-10-07 18:10:16,966 - DEBUG - Detected 122457 variants in 106227 reads
2012-10-07 18:10:17,616 - DEBUG - Detected 127662 variants in 88064 reads
2012-10-07 18:10:18,234 - DEBUG - Detected 131774 variants in 91673 reads
2012-10-07 18:10:19,239 - DEBUG - Taking top 8 variants by coverage in window 9:85001237-85001243
2012-10-07 18:10:19,290 - DEBUG - Taking top 8 variants by coverage in window 9:85001283-85001284
2012-10-07 18:10:19,603 - DEBUG - Taking top 8 variants by coverage in window 9:85005326-85005328
2012-10-07 18:10:19,695 - DEBUG - Taking top 8 variants by coverage in window 9:85005880-85005881
2012-10-07 18:10:19,718 - DEBUG - Taking top 8 variants by coverage in window 9:85005890-85005891
2012-10-07 18:10:20,723 - DEBUG - Taking top 8 variants by coverage in window 9:85019013-85019014
2012-10-07 18:10:21,432 - DEBUG - Taking top 8 variants by coverage in window 9:85030164-85030165
2012-10-07 18:10:22,702 - DEBUG - Taking top 8 variants by coverage in window 9:85056102-85056105
2012-10-07 18:10:23,206 - DEBUG - Taking top 8 variants by coverage in window 9:85065133-85065141
2012-10-07 18:10:23,568 - DEBUG - Taking top 8 variants by coverage in window 9:85065349-85065355
2012-10-07 18:10:24,558 - DEBUG - Taking top 8 variants by coverage in window 9:85077517-85077518
2012-10-07 18:10:24,694 - DEBUG - Taking top 8 variants by coverage in window 9:85078019-85078020
2012-10-07 18:10:25,119 - DEBUG - Taking top 8 variants by coverage in window 9:85084631-85084633
2012-10-07 18:10:25,146 - DEBUG - Taking top 8 variants by coverage in window 9:85084668-85084669
2012-10-07 18:10:25,657 - DEBUG - Taking top 8 variants by coverage in window 9:85091780-85091781
2012-10-07 18:10:27,264 - DEBUG - Taking top 8 variants by coverage in window 9:85123324-85123325
2012-10-07 18:10:27,459 - DEBUG - Taking top 8 variants by coverage in window 9:85125080-85125081
2012-10-07 18:10:27,731 - DEBUG - Taking top 8 variants by coverage in window 9:85127916-85127917
2012-10-07 18:10:27,794 - DEBUG - Taking top 8 variants by coverage in window 9:85130123-85130124
2012-10-07 18:10:27,832 - DEBUG - Taking top 8 variants by coverage in window 9:85130161-85130162
2012-10-07 18:10:29,095 - DEBUG - Taking top 8 variants by coverage in window 9:85155885-85155886
2012-10-07 18:10:29,169 - DEBUG - Taking top 8 variants by coverage in window 9:85156739-85156741
2012-10-07 18:10:29,190 - DEBUG - Taking top 8 variants by coverage in window 9:85157068-85157069
2012-10-07 18:10:30,964 - DEBUG - Taking top 8 variants by coverage in window 9:85203086-85203096
2012-10-07 18:10:31,017 - DEBUG - Taking top 8 variants by coverage in window 9:85204083-85204084
2012-10-07 18:10:31,325 - DEBUG - Taking top 8 variants by coverage in window 9:85207059-85207060
2012-10-07 18:10:31,670 - DEBUG - Taking top 8 variants by coverage in window 9:85213158-85213159
2012-10-07 18:10:32,194 - DEBUG - Taking top 8 variants by coverage in window 9:85224704-85224707
2012-10-07 18:10:32,576 - DEBUG - Taking top 8 variants by coverage in window 9:85233537-85233538
2012-10-07 18:10:32,589 - DEBUG - Taking top 8 variants by coverage in window 9:85233550-85233551
2012-10-07 18:10:33,273 - DEBUG - Taking top 8 variants by coverage in window 9:85243804-85243807
2012-10-07 18:10:33,722 - DEBUG - Taking top 8 variants by coverage in window 9:85247923-85247930
2012-10-07 18:10:34,775 - DEBUG - Taking top 8 variants by coverage in window 9:85258282-85258283
2012-10-07 18:10:35,116 - DEBUG - Taking top 8 variants by coverage in window 9:85261764-85261765
2012-10-07 18:10:35,868 - DEBUG - Taking top 8 variants by coverage in window 9:85271802-85271811
2012-10-07 18:10:36,385 - DEBUG - Taking top 8 variants by coverage in window 9:85276958-85276959
2012-10-07 18:10:36,403 - DEBUG - Taking top 8 variants by coverage in window 9:85276966-85276967
2012-10-07 18:10:36,656 - DEBUG - Taking top 8 variants by coverage in window 9:85279372-85279373
2012-10-07 18:10:36,671 - DEBUG - Taking top 8 variants by coverage in window 9:85279381-85279382
2012-10-07 18:10:36,711 - DEBUG - Taking top 8 variants by coverage in window 9:85279412-85279444
2012-10-07 18:10:38,508 - DEBUG - Taking top 8 variants by coverage in window 9:85309801-85309803
2012-10-07 18:10:38,702 - DEBUG - Taking top 8 variants by coverage in window 9:85314177-85314178
2012-10-07 18:10:38,733 - DEBUG - Taking top 8 variants by coverage in window 9:85314265-85314268
2012-10-07 18:10:39,802 - DEBUG - Taking top 8 variants by coverage in window 9:85325258-85325259
2012-10-07 18:10:40,102 - DEBUG - Taking top 8 variants by coverage in window 9:85328661-85328663
2012-10-07 18:10:40,122 - DEBUG - Taking top 8 variants by coverage in window 9:85328688-85328692
2012-10-07 18:10:40,540 - DEBUG - Taking top 8 variants by coverage in window 9:85335628-85335629
2012-10-07 18:10:40,557 - DEBUG - Taking top 8 variants by coverage in window 9:85335634-85335635
2012-10-07 18:10:41,322 - DEBUG - Taking top 8 variants by coverage in window 9:85344134-85344135
2012-10-07 18:10:41,348 - DEBUG - Taking top 8 variants by coverage in window 9:85344150-85344151
2012-10-07 18:10:42,081 - DEBUG - Taking top 8 variants by coverage in window 9:85351923-85351924
2012-10-07 18:10:42,105 - DEBUG - Taking top 8 variants by coverage in window 9:85352200-85352201
2012-10-07 18:10:43,571 - DEBUG - Taking top 8 variants by coverage in window 9:85372228-85372229
2012-10-07 18:10:43,679 - DEBUG - Taking top 8 variants by coverage in window 9:85372661-85372662
2012-10-07 18:10:45,726 - DEBUG - Taking top 8 variants by coverage in window 9:85407229-85407230
2012-10-07 18:10:45,775 - DEBUG - Taking top 8 variants by coverage in window 9:85409870-85409871
2012-10-07 18:10:46,235 - DEBUG - Taking top 8 variants by coverage in window 9:85415963-85415964
2012-10-07 18:10:46,478 - DEBUG - Taking top 8 variants by coverage in window 9:85418868-85418870
2012-10-07 18:10:47,664 - DEBUG - Taking top 8 variants by coverage in window 9:85434304-85434305
2012-10-07 18:10:47,821 - DEBUG - Taking top 8 variants by coverage in window 9:85435198-85435199
2012-10-07 18:10:48,138 - DEBUG - Taking top 8 variants by coverage in window 9:85437250-85437251
2012-10-07 18:10:48,180 - DEBUG - Taking top 8 variants by coverage in window 9:85437271-85437272
2012-10-07 18:10:48,350 - DEBUG - Taking top 8 variants by coverage in window 9:85437819-85437820
2012-10-07 18:10:48,470 - DEBUG - Taking top 8 variants by coverage in window 9:85438258-85438259
2012-10-07 18:10:48,972 - DEBUG - Taking top 8 variants by coverage in window 9:85446835-85446836
2012-10-07 18:10:49,009 - DEBUG - Taking top 8 variants by coverage in window 9:85446889-85446890
2012-10-07 18:10:49,453 - DEBUG - Taking top 8 variants by coverage in window 9:85454181-85454183
2012-10-07 18:10:50,301 - DEBUG - Taking top 8 variants by coverage in window 9:85462183-85462184
2012-10-07 18:10:50,524 - DEBUG - Taking top 8 variants by coverage in window 9:85465168-85465169
2012-10-07 18:10:50,534 - DEBUG - Taking top 8 variants by coverage in window 9:85465172-85465173
2012-10-07 18:10:51,800 - DEBUG - Taking top 8 variants by coverage in window 9:85482807-85482808
2012-10-07 18:10:52,005 - DEBUG - Taking top 8 variants by coverage in window 9:85486266-85486267
2012-10-07 18:10:52,498 - DEBUG - Taking top 8 variants by coverage in window 9:85494965-85494966
2012-10-07 18:10:52,531 - DEBUG - Taking top 8 variants by coverage in window 9:85495235-85495236
2012-10-07 18:10:53,159 - DEBUG - Taking top 8 variants by coverage in window 9:85503186-85503189
2012-10-07 18:10:54,495 - DEBUG - Taking top 8 variants by coverage in window 9:85526951-85526961
2012-10-07 18:10:54,655 - DEBUG - Taking top 8 variants by coverage in window 9:85528012-85528013
2012-10-07 18:10:54,964 - DEBUG - Taking top 8 variants by coverage in window 9:85531821-85531822
2012-10-07 18:10:54,975 - DEBUG - Taking top 8 variants by coverage in window 9:85531826-85531829
2012-10-07 18:10:54,992 - DEBUG - Taking top 8 variants by coverage in window 9:85531831-85531832
2012-10-07 18:10:55,686 - DEBUG - Taking top 8 variants by coverage in window 9:85539987-85539988
2012-10-07 18:10:55,974 - DEBUG - Taking top 8 variants by coverage in window 9:85544452-85544453
2012-10-07 18:10:56,601 - DEBUG - Taking top 8 variants by coverage in window 9:85552024-85552025
2012-10-07 18:10:57,006 - DEBUG - Taking top 8 variants by coverage in window 9:85556534-85556538
2012-10-07 18:10:57,613 - DEBUG - Taking top 8 variants by coverage in window 9:85561699-85561700
2012-10-07 18:10:59,043 - DEBUG - Taking top 8 variants by coverage in window 9:85579601-85579602
2012-10-07 18:10:59,351 - DEBUG - Taking top 8 variants by coverage in window 9:85583497-85583507
2012-10-07 18:10:59,575 - DEBUG - Taking top 8 variants by coverage in window 9:85583513-85583519
2012-10-07 18:11:00,346 - DEBUG - Taking top 8 variants by coverage in window 9:85595272-85595273
2012-10-07 18:11:01,698 - DEBUG - Taking top 8 variants by coverage in window 9:85612855-85612856
2012-10-07 18:11:01,873 - DEBUG - Taking top 8 variants by coverage in window 9:85614309-85614311
2012-10-07 18:11:02,429 - DEBUG - Taking top 8 variants by coverage in window 9:85624079-85624080
2012-10-07 18:11:02,440 - DEBUG - Taking top 8 variants by coverage in window 9:85624095-85624097
2012-10-07 18:11:02,547 - DEBUG - Taking top 8 variants by coverage in window 9:85625147-85625148
2012-10-07 18:11:02,918 - DEBUG - Taking top 8 variants by coverage in window 9:85629917-85629922
2012-10-07 18:11:03,582 - DEBUG - Taking top 8 variants by coverage in window 9:85637793-85637801
2012-10-07 18:11:03,735 - DEBUG - Taking top 8 variants by coverage in window 9:85639939-85639941
2012-10-07 18:11:03,766 - DEBUG - Taking top 8 variants by coverage in window 9:85640163-85640164
2012-10-07 18:11:03,954 - DEBUG - Taking top 8 variants by coverage in window 9:85642019-85642029
2012-10-07 18:11:04,156 - DEBUG - Taking top 8 variants by coverage in window 9:85645576-85645577
2012-10-07 18:11:05,696 - DEBUG - Taking top 8 variants by coverage in window 9:85661194-85661195
2012-10-07 18:11:06,186 - DEBUG - Taking top 8 variants by coverage in window 9:85666367-85666373
2012-10-07 18:11:06,670 - DEBUG - Taking top 8 variants by coverage in window 9:85673135-85673136
2012-10-07 18:11:06,741 - DEBUG - Taking top 8 variants by coverage in window 9:85674067-85674068
2012-10-07 18:11:06,789 - DEBUG - Taking top 8 variants by coverage in window 9:85674180-85674181
2012-10-07 18:11:06,949 - DEBUG - Taking top 8 variants by coverage in window 9:85676287-85676288
2012-10-07 18:11:07,531 - DEBUG - Taking top 8 variants by coverage in window 9:85682733-85682734
2012-10-07 18:11:07,729 - DEBUG - Taking top 8 variants by coverage in window 9:85684270-85684273
2012-10-07 18:11:08,351 - DEBUG - Taking top 8 variants by coverage in window 9:85693190-85693191
2012-10-07 18:11:09,373 - DEBUG - Taking top 8 variants by coverage in window 9:85710626-85710629
2012-10-07 18:11:09,881 - DEBUG - Taking top 8 variants by coverage in window 9:85716927-85716928
2012-10-07 18:11:09,892 - DEBUG - Taking top 8 variants by coverage in window 9:85716929-85716930
2012-10-07 18:11:10,575 - DEBUG - Taking top 8 variants by coverage in window 9:85724952-85724953
2012-10-07 18:11:10,778 - DEBUG - Taking top 8 variants by coverage in window 9:85731574-85731575
2012-10-07 18:11:10,905 - DEBUG - Taking top 8 variants by coverage in window 9:85734362-85734382
2012-10-07 18:11:10,936 - DEBUG - Taking top 8 variants by coverage in window 9:85734389-85734390
2012-10-07 18:11:11,260 - DEBUG - Taking top 8 variants by coverage in window 9:85742059-85742067
2012-10-07 18:11:11,335 - DEBUG - Taking top 8 variants by coverage in window 9:85742196-85742198
2012-10-07 18:11:11,990 - DEBUG - Taking top 8 variants by coverage in window 9:85752075-85752076
2012-10-07 18:11:12,003 - DEBUG - Taking top 8 variants by coverage in window 9:85752096-85752097
2012-10-07 18:11:12,482 - DEBUG - Taking top 8 variants by coverage in window 9:85756806-85756807
2012-10-07 18:11:13,698 - DEBUG - Taking top 8 variants by coverage in window 9:85774911-85774912
2012-10-07 18:11:15,027 - DEBUG - Taking top 8 variants by coverage in window 9:85791212-85791213
2012-10-07 18:11:15,481 - DEBUG - Taking top 8 variants by coverage in window 9:85803180-85803181
2012-10-07 18:11:16,146 - DEBUG - Taking top 8 variants by coverage in window 9:85812993-85812994
2012-10-07 18:11:16,168 - DEBUG - Taking top 8 variants by coverage in window 9:85813050-85813055
2012-10-07 18:11:16,526 - DEBUG - Taking top 8 variants by coverage in window 9:85817330-85817335
2012-10-07 18:11:17,621 - DEBUG - Taking top 8 variants by coverage in window 9:85831746-85831747
2012-10-07 18:11:17,630 - DEBUG - Taking top 8 variants by coverage in window 9:85831774-85831775
2012-10-07 18:11:18,848 - DEBUG - Taking top 8 variants by coverage in window 9:85842039-85842046
2012-10-07 18:11:18,998 - DEBUG - Taking top 8 variants by coverage in window 9:85843277-85843280
2012-10-07 18:11:19,124 - DEBUG - Taking top 8 variants by coverage in window 9:85844098-85844100
2012-10-07 18:11:19,950 - DEBUG - Taking top 8 variants by coverage in window 9:85853718-85853721
2012-10-07 18:11:20,726 - DEBUG - Taking top 8 variants by coverage in window 9:85860245-85860249
2012-10-07 18:11:20,887 - DEBUG - Taking top 8 variants by coverage in window 9:85861572-85861574
2012-10-07 18:11:20,895 - DEBUG - Taking top 8 variants by coverage in window 9:85861585-85861586
2012-10-07 18:11:21,440 - DEBUG - Taking top 8 variants by coverage in window 9:85867494-85867499
2012-10-07 18:11:22,266 - DEBUG - Taking top 8 variants by coverage in window 9:85878204-85878205
2012-10-07 18:11:22,358 - DEBUG - Taking top 8 variants by coverage in window 9:85878249-85878250
2012-10-07 18:11:22,643 - DEBUG - Taking top 8 variants by coverage in window 9:85881390-85881391
2012-10-07 18:11:23,509 - DEBUG - Taking top 8 variants by coverage in window 9:85890692-85890693
2012-10-07 18:11:24,698 - DEBUG - Taking top 8 variants by coverage in window 9:85904552-85904556
2012-10-07 18:11:24,788 - DEBUG - Taking top 8 variants by coverage in window 9:85904559-85904560
2012-10-07 18:11:24,882 - DEBUG - Taking top 8 variants by coverage in window 9:85904561-85904562
2012-10-07 18:11:26,731 - DEBUG - Taking top 8 variants by coverage in window 9:85929383-85929390
2012-10-07 18:11:26,806 - DEBUG - Taking top 8 variants by coverage in window 9:85930029-85930030
2012-10-07 18:11:27,214 - DEBUG - Taking top 8 variants by coverage in window 9:85935292-85935293
2012-10-07 18:11:27,670 - DEBUG - Taking top 8 variants by coverage in window 9:85940312-85940313
2012-10-07 18:11:28,602 - DEBUG - Taking top 8 variants by coverage in window 9:85963477-85963478
2012-10-07 18:11:28,914 - DEBUG - Taking top 8 variants by coverage in window 9:85968423-85968424
2012-10-07 18:11:29,001 - DEBUG - Taking top 8 variants by coverage in window 9:85969636-85969637
2012-10-07 18:11:31,260 - DEBUG - Read 90093 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 18:11:31,491 - DEBUG - Read 98169 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 18:11:31,739 - DEBUG - Read 113572 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 18:11:32,013 - DEBUG - Read 112450 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 18:11:32,278 - DEBUG - Read 108049 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 18:11:32,515 - DEBUG - Read 101694 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 18:11:32,761 - DEBUG - Read 108951 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 18:11:32,999 - DEBUG - Read 96502 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 18:11:33,222 - DEBUG - Read 93319 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 18:11:33,454 - DEBUG - Read 94095 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 18:11:33,699 - DEBUG - Read 103631 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 18:11:33,912 - DEBUG - Read 91434 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 18:11:34,136 - DEBUG - Read 93337 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 18:11:34,368 - DEBUG - Read 104874 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 18:11:34,627 - DEBUG - Read 114345 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 18:11:34,836 - DEBUG - Read 85087 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 18:11:35,076 - DEBUG - Read 108621 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 18:11:35,322 - DEBUG - Read 104733 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 18:11:35,526 - DEBUG - Read 87749 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 18:11:35,752 - DEBUG - Read 90303 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 18:11:35,851 - DEBUG - Detected 22317 variants in 90093 reads
2012-10-07 18:11:36,000 - DEBUG - Detected 29725 variants in 98169 reads
2012-10-07 18:11:36,203 - DEBUG - Detected 37258 variants in 113572 reads
2012-10-07 18:11:36,454 - DEBUG - Detected 46804 variants in 112450 reads
2012-10-07 18:11:36,719 - DEBUG - Detected 53000 variants in 108049 reads
2012-10-07 18:11:37,007 - DEBUG - Detected 58248 variants in 101694 reads
2012-10-07 18:11:37,328 - DEBUG - Detected 70683 variants in 108951 reads
2012-10-07 18:11:37,694 - DEBUG - Detected 75271 variants in 96502 reads
2012-10-07 18:11:38,074 - DEBUG - Detected 80492 variants in 93319 reads
2012-10-07 18:11:38,484 - DEBUG - Detected 86000 variants in 94095 reads
2012-10-07 18:11:38,966 - DEBUG - Detected 90874 variants in 103631 reads
2012-10-07 18:11:39,416 - DEBUG - Detected 94019 variants in 91434 reads
2012-10-07 18:11:39,881 - DEBUG - Detected 98204 variants in 93337 reads
2012-10-07 18:11:40,366 - DEBUG - Detected 102140 variants in 104874 reads
2012-10-07 18:11:40,892 - DEBUG - Detected 110603 variants in 114345 reads
2012-10-07 18:11:41,431 - DEBUG - Detected 114404 variants in 85087 reads
2012-10-07 18:11:42,067 - DEBUG - Detected 118012 variants in 108621 reads
2012-10-07 18:11:42,661 - DEBUG - Detected 121651 variants in 104733 reads
2012-10-07 18:11:43,251 - DEBUG - Detected 126029 variants in 87749 reads
2012-10-07 18:11:43,860 - DEBUG - Detected 130598 variants in 90303 reads
2012-10-07 18:11:45,169 - DEBUG - Taking top 8 variants by coverage in window 9:86013694-86013695
2012-10-07 18:11:45,513 - DEBUG - Taking top 8 variants by coverage in window 9:86023135-86023136
2012-10-07 18:11:45,621 - DEBUG - Taking top 8 variants by coverage in window 9:86027181-86027182
2012-10-07 18:11:46,504 - DEBUG - Taking top 8 variants by coverage in window 9:86042142-86042143
2012-10-07 18:11:46,793 - DEBUG - Taking top 8 variants by coverage in window 9:86044800-86044801
2012-10-07 18:11:46,856 - DEBUG - Taking top 8 variants by coverage in window 9:86045372-86045373
2012-10-07 18:11:47,144 - DEBUG - Taking top 8 variants by coverage in window 9:86049077-86049078
2012-10-07 18:11:48,186 - DEBUG - Taking top 8 variants by coverage in window 9:86070183-86070184
2012-10-07 18:11:48,281 - DEBUG - Taking top 8 variants by coverage in window 9:86071723-86071724
2012-10-07 18:11:49,250 - DEBUG - Taking top 8 variants by coverage in window 9:86086857-86086859
2012-10-07 18:11:49,268 - DEBUG - Taking top 8 variants by coverage in window 9:86093083-86093084
2012-10-07 18:11:49,692 - DEBUG - Taking top 8 variants by coverage in window 9:86100813-86100825
2012-10-07 18:11:51,540 - DEBUG - Taking top 8 variants by coverage in window 9:86133477-86133478
2012-10-07 18:11:51,731 - DEBUG - Taking top 8 variants by coverage in window 9:86136989-86136990
2012-10-07 18:11:51,884 - DEBUG - Taking top 8 variants by coverage in window 9:86138288-86138291
2012-10-07 18:11:52,279 - DEBUG - Taking top 8 variants by coverage in window 9:86143763-86143764
2012-10-07 18:11:52,858 - DEBUG - Taking top 8 variants by coverage in window 9:86153922-86153924
2012-10-07 18:11:53,051 - DEBUG - Taking top 8 variants by coverage in window 9:86155406-86155407
2012-10-07 18:11:53,311 - DEBUG - Taking top 8 variants by coverage in window 9:86159015-86159016
2012-10-07 18:11:54,361 - DEBUG - Taking top 8 variants by coverage in window 9:86169038-86169039
2012-10-07 18:11:54,591 - DEBUG - Taking top 8 variants by coverage in window 9:86171091-86171092
2012-10-07 18:11:54,953 - DEBUG - Taking top 8 variants by coverage in window 9:86176143-86176144
2012-10-07 18:11:55,222 - DEBUG - Taking top 8 variants by coverage in window 9:86180230-86180231
2012-10-07 18:11:55,314 - DEBUG - Taking top 8 variants by coverage in window 9:86182609-86182611
2012-10-07 18:11:55,509 - DEBUG - Taking top 8 variants by coverage in window 9:86183518-86183519
2012-10-07 18:11:55,619 - DEBUG - Taking top 8 variants by coverage in window 9:86189993-86189994
2012-10-07 18:11:55,695 - DEBUG - Taking top 8 variants by coverage in window 9:86190612-86190613
2012-10-07 18:11:56,179 - DEBUG - Taking top 8 variants by coverage in window 9:86196389-86196390
2012-10-07 18:11:56,321 - DEBUG - Taking top 8 variants by coverage in window 9:86197656-86197657
2012-10-07 18:11:56,488 - DEBUG - Taking top 8 variants by coverage in window 9:86199112-86199113
2012-10-07 18:11:56,750 - DEBUG - Taking top 8 variants by coverage in window 9:86203586-86203587
2012-10-07 18:11:56,814 - DEBUG - Taking top 8 variants by coverage in window 9:86204143-86204144
2012-10-07 18:11:56,925 - DEBUG - Taking top 8 variants by coverage in window 9:86205603-86205604
2012-10-07 18:11:57,082 - DEBUG - Taking top 8 variants by coverage in window 9:86208784-86208785
2012-10-07 18:11:57,505 - DEBUG - Taking top 8 variants by coverage in window 9:86213879-86213880
2012-10-07 18:11:57,516 - DEBUG - Taking top 8 variants by coverage in window 9:86213880-86213882
2012-10-07 18:11:57,552 - DEBUG - Taking top 8 variants by coverage in window 9:86213884-86213885
2012-10-07 18:11:57,744 - DEBUG - Taking top 8 variants by coverage in window 9:86215559-86215560
2012-10-07 18:11:57,998 - DEBUG - Taking top 8 variants by coverage in window 9:86219124-86219125
2012-10-07 18:11:58,381 - DEBUG - Taking top 8 variants by coverage in window 9:86225766-86225767
2012-10-07 18:11:58,948 - DEBUG - Taking top 8 variants by coverage in window 9:86233243-86233245
2012-10-07 18:11:59,608 - DEBUG - Taking top 8 variants by coverage in window 9:86241935-86241936
2012-10-07 18:11:59,924 - DEBUG - Taking top 8 variants by coverage in window 9:86248624-86248631
2012-10-07 18:12:01,931 - DEBUG - Taking top 8 variants by coverage in window 9:86274572-86274574
2012-10-07 18:12:01,960 - DEBUG - Taking top 8 variants by coverage in window 9:86277066-86277067
2012-10-07 18:12:01,990 - DEBUG - Taking top 8 variants by coverage in window 9:86277471-86277472
2012-10-07 18:12:02,229 - DEBUG - Taking top 8 variants by coverage in window 9:86280714-86280715
2012-10-07 18:12:02,310 - DEBUG - Taking top 8 variants by coverage in window 9:86281893-86281894
2012-10-07 18:12:03,286 - DEBUG - Taking top 8 variants by coverage in window 9:86302024-86302025
2012-10-07 18:12:03,484 - DEBUG - Taking top 8 variants by coverage in window 9:86305021-86305026
2012-10-07 18:12:05,701 - DEBUG - Taking top 8 variants by coverage in window 9:86332954-86332955
2012-10-07 18:12:05,729 - DEBUG - Taking top 8 variants by coverage in window 9:86332981-86332982
2012-10-07 18:12:05,795 - DEBUG - Taking top 8 variants by coverage in window 9:86333610-86333613
2012-10-07 18:12:07,588 - DEBUG - Taking top 8 variants by coverage in window 9:86350078-86350080
2012-10-07 18:12:07,741 - DEBUG - Taking top 8 variants by coverage in window 9:86351790-86351794
2012-10-07 18:12:08,666 - DEBUG - Taking top 8 variants by coverage in window 9:86356756-86356757
2012-10-07 18:12:10,045 - DEBUG - Taking top 8 variants by coverage in window 9:86380317-86380322
2012-10-07 18:12:10,382 - DEBUG - Taking top 8 variants by coverage in window 9:86385825-86385826
2012-10-07 18:12:11,172 - DEBUG - Taking top 8 variants by coverage in window 9:86398623-86398629
2012-10-07 18:12:12,041 - DEBUG - Taking top 8 variants by coverage in window 9:86421053-86421054
2012-10-07 18:12:13,254 - DEBUG - Taking top 8 variants by coverage in window 9:86440146-86440147
2012-10-07 18:12:13,666 - DEBUG - Taking top 8 variants by coverage in window 9:86444746-86444747
2012-10-07 18:12:14,565 - DEBUG - Taking top 8 variants by coverage in window 9:86457962-86457963
2012-10-07 18:12:15,872 - DEBUG - Taking top 8 variants by coverage in window 9:86477642-86477643
2012-10-07 18:12:15,904 - DEBUG - Taking top 8 variants by coverage in window 9:86477652-86477654
2012-10-07 18:12:17,178 - DEBUG - Taking top 8 variants by coverage in window 9:86487016-86487017
2012-10-07 18:12:19,018 - DEBUG - Taking top 8 variants by coverage in window 9:86502074-86502080
2012-10-07 18:12:19,537 - DEBUG - Taking top 8 variants by coverage in window 9:86505913-86505915
2012-10-07 18:12:19,639 - DEBUG - Taking top 8 variants by coverage in window 9:86505918-86505919
2012-10-07 18:12:19,661 - DEBUG - Taking top 8 variants by coverage in window 9:86505945-86505946
2012-10-07 18:12:19,852 - DEBUG - Taking top 8 variants by coverage in window 9:86507739-86507743
2012-10-07 18:12:21,315 - DEBUG - Taking top 8 variants by coverage in window 9:86525998-86526001
2012-10-07 18:12:22,050 - DEBUG - Taking top 8 variants by coverage in window 9:86532780-86532781
2012-10-07 18:12:22,071 - DEBUG - Taking top 8 variants by coverage in window 9:86532784-86532787
2012-10-07 18:12:22,145 - DEBUG - Taking top 8 variants by coverage in window 9:86532808-86532809
2012-10-07 18:12:23,133 - DEBUG - Taking top 8 variants by coverage in window 9:86549048-86549049
2012-10-07 18:12:24,041 - DEBUG - Taking top 8 variants by coverage in window 9:86558622-86558625
2012-10-07 18:12:24,110 - DEBUG - Taking top 8 variants by coverage in window 9:86558735-86558736
2012-10-07 18:12:24,756 - DEBUG - Taking top 8 variants by coverage in window 9:86564435-86564437
2012-10-07 18:12:25,537 - DEBUG - Taking top 8 variants by coverage in window 9:86569763-86569764
2012-10-07 18:12:25,672 - DEBUG - Taking top 8 variants by coverage in window 9:86571068-86571069
2012-10-07 18:12:25,687 - DEBUG - Taking top 8 variants by coverage in window 9:86571071-86571072
2012-10-07 18:12:26,061 - DEBUG - Taking top 8 variants by coverage in window 9:86574340-86574342
2012-10-07 18:12:26,632 - DEBUG - Taking top 8 variants by coverage in window 9:86580516-86580517
2012-10-07 18:12:26,736 - DEBUG - Taking top 8 variants by coverage in window 9:86582252-86582253
2012-10-07 18:12:26,741 - DEBUG - Taking top 8 variants by coverage in window 9:86582352-86582353
2012-10-07 18:12:27,119 - DEBUG - Taking top 8 variants by coverage in window 9:86588435-86588436
2012-10-07 18:12:27,431 - DEBUG - Taking top 8 variants by coverage in window 9:86591879-86591880
2012-10-07 18:12:27,887 - DEBUG - Taking top 8 variants by coverage in window 9:86597455-86597456
2012-10-07 18:12:28,738 - DEBUG - Taking top 8 variants by coverage in window 9:86604920-86604921
2012-10-07 18:12:29,100 - DEBUG - Taking top 8 variants by coverage in window 9:86609149-86609150
2012-10-07 18:12:29,151 - DEBUG - Taking top 8 variants by coverage in window 9:86609191-86609193
2012-10-07 18:12:30,057 - DEBUG - Taking top 8 variants by coverage in window 9:86635997-86635998
2012-10-07 18:12:30,453 - DEBUG - Taking top 8 variants by coverage in window 9:86639936-86639937
2012-10-07 18:12:30,494 - DEBUG - Taking top 8 variants by coverage in window 9:86640273-86640274
2012-10-07 18:12:30,586 - DEBUG - Taking top 8 variants by coverage in window 9:86641356-86641360
2012-10-07 18:12:30,710 - DEBUG - Taking top 8 variants by coverage in window 9:86641551-86641552
2012-10-07 18:12:30,810 - DEBUG - Taking top 8 variants by coverage in window 9:86642969-86642971
2012-10-07 18:12:31,232 - DEBUG - Taking top 8 variants by coverage in window 9:86647818-86647819
2012-10-07 18:12:31,898 - DEBUG - Taking top 8 variants by coverage in window 9:86656824-86656825
2012-10-07 18:12:32,254 - DEBUG - Taking top 8 variants by coverage in window 9:86662247-86662248
2012-10-07 18:12:32,259 - DEBUG - Taking top 8 variants by coverage in window 9:86664235-86664236
2012-10-07 18:12:32,706 - DEBUG - Taking top 8 variants by coverage in window 9:86671194-86671195
2012-10-07 18:12:33,836 - DEBUG - Taking top 8 variants by coverage in window 9:86690083-86690084
2012-10-07 18:12:37,062 - DEBUG - Taking top 8 variants by coverage in window 9:86727167-86727177
2012-10-07 18:12:37,317 - DEBUG - Taking top 8 variants by coverage in window 9:86729781-86729788
2012-10-07 18:12:38,017 - DEBUG - Taking top 8 variants by coverage in window 9:86736408-86736409
2012-10-07 18:12:38,205 - DEBUG - Taking top 8 variants by coverage in window 9:86737553-86737554
2012-10-07 18:12:38,277 - DEBUG - Taking top 8 variants by coverage in window 9:86737961-86737962
2012-10-07 18:12:38,305 - DEBUG - Taking top 8 variants by coverage in window 9:86738081-86738082
2012-10-07 18:12:38,419 - DEBUG - Taking top 8 variants by coverage in window 9:86738899-86738900
2012-10-07 18:12:38,466 - DEBUG - Taking top 8 variants by coverage in window 9:86738926-86738931
2012-10-07 18:12:38,508 - DEBUG - Taking top 8 variants by coverage in window 9:86738958-86738967
2012-10-07 18:12:38,791 - DEBUG - Taking top 8 variants by coverage in window 9:86738991-86738992
2012-10-07 18:12:39,054 - DEBUG - Taking top 8 variants by coverage in window 9:86739702-86739703
2012-10-07 18:12:39,204 - DEBUG - Taking top 8 variants by coverage in window 9:86742544-86742545
2012-10-07 18:12:39,410 - DEBUG - Taking top 8 variants by coverage in window 9:86744120-86744121
2012-10-07 18:12:39,453 - DEBUG - Taking top 8 variants by coverage in window 9:86744767-86744768
2012-10-07 18:12:39,703 - DEBUG - Taking top 8 variants by coverage in window 9:86747662-86747663
2012-10-07 18:12:41,249 - DEBUG - Taking top 8 variants by coverage in window 9:86764660-86764661
2012-10-07 18:12:41,926 - DEBUG - Taking top 8 variants by coverage in window 9:86772191-86772192
2012-10-07 18:12:42,013 - DEBUG - Taking top 8 variants by coverage in window 9:86773193-86773198
2012-10-07 18:12:42,048 - DEBUG - Taking top 8 variants by coverage in window 9:86773986-86773987
2012-10-07 18:12:42,585 - DEBUG - Taking top 8 variants by coverage in window 9:86784453-86784454
2012-10-07 18:12:42,933 - DEBUG - Taking top 8 variants by coverage in window 9:86792118-86792119
2012-10-07 18:12:43,134 - DEBUG - Taking top 8 variants by coverage in window 9:86795163-86795165
2012-10-07 18:12:43,154 - DEBUG - Taking top 8 variants by coverage in window 9:86795502-86795512
2012-10-07 18:12:43,955 - DEBUG - Taking top 8 variants by coverage in window 9:86802805-86802806
2012-10-07 18:12:44,887 - DEBUG - Taking top 8 variants by coverage in window 9:86813255-86813256
2012-10-07 18:12:45,383 - DEBUG - Taking top 8 variants by coverage in window 9:86817871-86817873
2012-10-07 18:12:45,554 - DEBUG - Taking top 8 variants by coverage in window 9:86819663-86819664
2012-10-07 18:12:45,571 - DEBUG - Taking top 8 variants by coverage in window 9:86819683-86819684
2012-10-07 18:12:46,884 - DEBUG - Taking top 8 variants by coverage in window 9:86836206-86836208
2012-10-07 18:12:48,100 - DEBUG - Taking top 8 variants by coverage in window 9:86855994-86855996
2012-10-07 18:12:48,507 - DEBUG - Taking top 8 variants by coverage in window 9:86860914-86860915
2012-10-07 18:12:49,284 - DEBUG - Taking top 8 variants by coverage in window 9:86870254-86870263
2012-10-07 18:12:50,054 - DEBUG - Taking top 8 variants by coverage in window 9:86876972-86876974
2012-10-07 18:12:50,841 - DEBUG - Taking top 8 variants by coverage in window 9:86887136-86887137
2012-10-07 18:12:50,941 - DEBUG - Taking top 8 variants by coverage in window 9:86888107-86888108
2012-10-07 18:12:50,969 - DEBUG - Taking top 8 variants by coverage in window 9:86888142-86888143
2012-10-07 18:12:52,154 - DEBUG - Taking top 8 variants by coverage in window 9:86897328-86897329
2012-10-07 18:12:52,857 - DEBUG - Taking top 8 variants by coverage in window 9:86906490-86906491
2012-10-07 18:12:53,812 - DEBUG - Taking top 8 variants by coverage in window 9:86921423-86921424
2012-10-07 18:12:53,823 - DEBUG - Taking top 8 variants by coverage in window 9:86921424-86921425
2012-10-07 18:12:54,159 - DEBUG - Taking top 8 variants by coverage in window 9:86927472-86927473
2012-10-07 18:12:54,534 - DEBUG - Taking top 8 variants by coverage in window 9:86935239-86935240
2012-10-07 18:12:54,555 - DEBUG - Taking top 8 variants by coverage in window 9:86935282-86935283
2012-10-07 18:12:55,799 - DEBUG - Taking top 8 variants by coverage in window 9:86957849-86957850
2012-10-07 18:12:56,687 - DEBUG - Taking top 8 variants by coverage in window 9:86971274-86971275
2012-10-07 18:12:56,871 - DEBUG - Taking top 8 variants by coverage in window 9:86974764-86974765
2012-10-07 18:12:57,778 - DEBUG - Taking top 8 variants by coverage in window 9:86984331-86984337
2012-10-07 18:12:57,800 - DEBUG - Taking top 8 variants by coverage in window 9:86984341-86984342
2012-10-07 18:12:57,985 - DEBUG - Taking top 8 variants by coverage in window 9:86985337-86985338
2012-10-07 18:12:57,996 - DEBUG - Taking top 8 variants by coverage in window 9:86985344-86985345
2012-10-07 18:12:58,053 - DEBUG - Taking top 8 variants by coverage in window 9:86985572-86985573
2012-10-07 18:12:58,082 - DEBUG - Taking top 8 variants by coverage in window 9:86985652-86985666
2012-10-07 18:12:58,301 - DEBUG - Taking top 8 variants by coverage in window 9:86986925-86986926
2012-10-07 18:12:59,600 - DEBUG - Read 86438 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 18:12:59,823 - DEBUG - Read 91182 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 18:13:00,065 - DEBUG - Read 107869 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 18:13:00,332 - DEBUG - Read 107705 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 18:13:00,592 - DEBUG - Read 103427 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 18:13:00,824 - DEBUG - Read 98004 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 18:13:01,066 - DEBUG - Read 103654 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 18:13:01,297 - DEBUG - Read 92304 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 18:13:01,515 - DEBUG - Read 88012 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 18:13:01,741 - DEBUG - Read 90799 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 18:13:01,981 - DEBUG - Read 99287 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 18:13:02,194 - DEBUG - Read 88472 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 18:13:02,415 - DEBUG - Read 89984 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 18:13:02,641 - DEBUG - Read 99569 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 18:13:02,892 - DEBUG - Read 108118 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 18:13:03,103 - DEBUG - Read 83026 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 18:13:03,337 - DEBUG - Read 103168 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 18:13:03,581 - DEBUG - Read 101249 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 18:13:03,783 - DEBUG - Read 84140 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 18:13:04,003 - DEBUG - Read 86695 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 18:13:04,097 - DEBUG - Detected 20046 variants in 86438 reads
2012-10-07 18:13:04,240 - DEBUG - Detected 29904 variants in 91182 reads
2012-10-07 18:13:04,432 - DEBUG - Detected 37244 variants in 107869 reads
2012-10-07 18:13:04,653 - DEBUG - Detected 44126 variants in 107705 reads
2012-10-07 18:13:04,898 - DEBUG - Detected 50195 variants in 103427 reads
2012-10-07 18:13:05,167 - DEBUG - Detected 55019 variants in 98004 reads
2012-10-07 18:13:05,466 - DEBUG - Detected 66509 variants in 103654 reads
2012-10-07 18:13:05,841 - DEBUG - Detected 71117 variants in 92304 reads
2012-10-07 18:13:06,201 - DEBUG - Detected 76229 variants in 88012 reads
2012-10-07 18:13:06,592 - DEBUG - Detected 80444 variants in 90799 reads
2012-10-07 18:13:07,003 - DEBUG - Detected 84623 variants in 99287 reads
2012-10-07 18:13:07,429 - DEBUG - Detected 88235 variants in 88472 reads
2012-10-07 18:13:07,862 - DEBUG - Detected 91962 variants in 89984 reads
2012-10-07 18:13:08,313 - DEBUG - Detected 95928 variants in 99569 reads
2012-10-07 18:13:08,842 - DEBUG - Detected 102319 variants in 108118 reads
2012-10-07 18:13:09,336 - DEBUG - Detected 105543 variants in 83026 reads
2012-10-07 18:13:09,858 - DEBUG - Detected 108664 variants in 103168 reads
2012-10-07 18:13:10,396 - DEBUG - Detected 112489 variants in 101249 reads
2012-10-07 18:13:10,932 - DEBUG - Detected 115716 variants in 84140 reads
2012-10-07 18:13:11,479 - DEBUG - Detected 119642 variants in 86695 reads
2012-10-07 18:13:13,696 - DEBUG - Taking top 8 variants by coverage in window 9:87026191-87026192
2012-10-07 18:13:13,780 - DEBUG - Taking top 8 variants by coverage in window 9:87026227-87026231
2012-10-07 18:13:15,808 - DEBUG - Taking top 8 variants by coverage in window 9:87030147-87030153
2012-10-07 18:13:16,099 - DEBUG - Taking top 8 variants by coverage in window 9:87030161-87030173
2012-10-07 18:13:17,088 - DEBUG - Taking top 8 variants by coverage in window 9:87041737-87041739
2012-10-07 18:13:17,160 - DEBUG - Taking top 8 variants by coverage in window 9:87042825-87042826
2012-10-07 18:13:17,167 - DEBUG - Taking top 8 variants by coverage in window 9:87042826-87042827
2012-10-07 18:13:17,397 - DEBUG - Taking top 8 variants by coverage in window 9:87046102-87046104
2012-10-07 18:13:17,445 - DEBUG - Taking top 8 variants by coverage in window 9:87046106-87046107
2012-10-07 18:13:17,470 - DEBUG - Taking top 8 variants by coverage in window 9:87046174-87046182
2012-10-07 18:13:17,829 - DEBUG - Taking top 8 variants by coverage in window 9:87048221-87048222
2012-10-07 18:13:17,964 - DEBUG - Taking top 8 variants by coverage in window 9:87048575-87048592
2012-10-07 18:13:18,101 - DEBUG - Taking top 8 variants by coverage in window 9:87057303-87057304
2012-10-07 18:13:18,209 - DEBUG - Taking top 8 variants by coverage in window 9:87058506-87058507
2012-10-07 18:13:18,274 - DEBUG - Taking top 8 variants by coverage in window 9:87059051-87059057
2012-10-07 18:13:18,305 - DEBUG - Taking top 8 variants by coverage in window 9:87059063-87059064
2012-10-07 18:13:18,534 - DEBUG - Taking top 8 variants by coverage in window 9:87061047-87061048
2012-10-07 18:13:18,659 - DEBUG - Taking top 8 variants by coverage in window 9:87062221-87062222
2012-10-07 18:13:19,313 - DEBUG - Taking top 8 variants by coverage in window 9:87071370-87071377
2012-10-07 18:13:19,365 - DEBUG - Taking top 8 variants by coverage in window 9:87071395-87071396
2012-10-07 18:13:19,480 - DEBUG - Taking top 8 variants by coverage in window 9:87071690-87071691
2012-10-07 18:13:20,209 - DEBUG - Taking top 8 variants by coverage in window 9:87077773-87077774
2012-10-07 18:13:20,396 - DEBUG - Taking top 8 variants by coverage in window 9:87081496-87081497
2012-10-07 18:13:20,425 - DEBUG - Taking top 8 variants by coverage in window 9:87081525-87081526
2012-10-07 18:13:21,038 - DEBUG - Taking top 8 variants by coverage in window 9:87092900-87092901
2012-10-07 18:13:21,087 - DEBUG - Taking top 8 variants by coverage in window 9:87093646-87093647
2012-10-07 18:13:21,721 - DEBUG - Taking top 8 variants by coverage in window 9:87107521-87107522
2012-10-07 18:13:21,850 - DEBUG - Taking top 8 variants by coverage in window 9:87109936-87109937
2012-10-07 18:13:22,378 - DEBUG - Taking top 8 variants by coverage in window 9:87117045-87117046
2012-10-07 18:13:22,425 - DEBUG - Taking top 8 variants by coverage in window 9:87117135-87117136
2012-10-07 18:13:22,575 - DEBUG - Taking top 8 variants by coverage in window 9:87118858-87118859
2012-10-07 18:13:23,447 - DEBUG - Taking top 8 variants by coverage in window 9:87131398-87131399
2012-10-07 18:13:23,583 - DEBUG - Taking top 8 variants by coverage in window 9:87134889-87134890
2012-10-07 18:13:24,815 - DEBUG - Taking top 8 variants by coverage in window 9:87152712-87152713
2012-10-07 18:13:24,945 - DEBUG - Taking top 8 variants by coverage in window 9:87157089-87157090
2012-10-07 18:13:24,970 - DEBUG - Taking top 8 variants by coverage in window 9:87157107-87157108
2012-10-07 18:13:25,277 - DEBUG - Taking top 8 variants by coverage in window 9:87162064-87162067
2012-10-07 18:13:25,316 - DEBUG - Taking top 8 variants by coverage in window 9:87162077-87162078
2012-10-07 18:13:26,100 - DEBUG - Taking top 8 variants by coverage in window 9:87179171-87179172
2012-10-07 18:13:26,732 - DEBUG - Taking top 8 variants by coverage in window 9:87184789-87184792
2012-10-07 18:13:26,756 - DEBUG - Taking top 8 variants by coverage in window 9:87184801-87184806
2012-10-07 18:13:26,970 - DEBUG - Taking top 8 variants by coverage in window 9:87184832-87184833
2012-10-07 18:13:28,913 - DEBUG - Taking top 8 variants by coverage in window 9:87219072-87219073
2012-10-07 18:13:30,945 - DEBUG - Taking top 8 variants by coverage in window 9:87244989-87244990
2012-10-07 18:13:31,092 - DEBUG - Taking top 8 variants by coverage in window 9:87245009-87245010
2012-10-07 18:13:31,253 - DEBUG - Taking top 8 variants by coverage in window 9:87245312-87245313
2012-10-07 18:13:31,329 - DEBUG - Taking top 8 variants by coverage in window 9:87245428-87245429
2012-10-07 18:13:31,357 - DEBUG - Taking top 8 variants by coverage in window 9:87245499-87245500
2012-10-07 18:13:31,733 - DEBUG - Taking top 8 variants by coverage in window 9:87249205-87249211
2012-10-07 18:13:32,121 - DEBUG - Taking top 8 variants by coverage in window 9:87252140-87252147
2012-10-07 18:13:33,426 - DEBUG - Taking top 8 variants by coverage in window 9:87269509-87269510
2012-10-07 18:13:33,762 - DEBUG - Taking top 8 variants by coverage in window 9:87276819-87276820
2012-10-07 18:13:33,839 - DEBUG - Taking top 8 variants by coverage in window 9:87277003-87277004
2012-10-07 18:13:33,976 - DEBUG - Taking top 8 variants by coverage in window 9:87281734-87281736
2012-10-07 18:13:34,916 - DEBUG - Taking top 8 variants by coverage in window 9:87294562-87294563
2012-10-07 18:13:35,100 - DEBUG - Taking top 8 variants by coverage in window 9:87299474-87299490
2012-10-07 18:13:35,718 - DEBUG - Taking top 8 variants by coverage in window 9:87312340-87312356
2012-10-07 18:13:36,240 - DEBUG - Taking top 8 variants by coverage in window 9:87321367-87321368
2012-10-07 18:13:36,263 - DEBUG - Taking top 8 variants by coverage in window 9:87321370-87321371
2012-10-07 18:13:37,083 - DEBUG - Taking top 8 variants by coverage in window 9:87329969-87329970
2012-10-07 18:13:37,194 - DEBUG - Taking top 8 variants by coverage in window 9:87330615-87330617
2012-10-07 18:13:37,628 - DEBUG - Taking top 8 variants by coverage in window 9:87337321-87337322
2012-10-07 18:13:38,322 - DEBUG - Taking top 8 variants by coverage in window 9:87346111-87346112
2012-10-07 18:13:38,357 - DEBUG - Taking top 8 variants by coverage in window 9:87346121-87346124
2012-10-07 18:13:40,164 - DEBUG - Taking top 8 variants by coverage in window 9:87398789-87398790
2012-10-07 18:13:40,366 - DEBUG - Taking top 8 variants by coverage in window 9:87404776-87404777
2012-10-07 18:13:40,951 - DEBUG - Taking top 8 variants by coverage in window 9:87416840-87416841
2012-10-07 18:13:40,965 - DEBUG - Taking top 8 variants by coverage in window 9:87416846-87416847
2012-10-07 18:13:41,107 - DEBUG - Taking top 8 variants by coverage in window 9:87418022-87418023
2012-10-07 18:13:41,358 - DEBUG - Taking top 8 variants by coverage in window 9:87422164-87422165
2012-10-07 18:13:41,621 - DEBUG - Taking top 8 variants by coverage in window 9:87428459-87428478
2012-10-07 18:13:41,644 - DEBUG - Taking top 8 variants by coverage in window 9:87428611-87428612
2012-10-07 18:13:42,502 - DEBUG - Taking top 8 variants by coverage in window 9:87441315-87441321
2012-10-07 18:13:42,590 - DEBUG - Taking top 8 variants by coverage in window 9:87441459-87441460
2012-10-07 18:13:42,669 - DEBUG - Taking top 8 variants by coverage in window 9:87441697-87441698
2012-10-07 18:13:43,988 - DEBUG - Taking top 8 variants by coverage in window 9:87466848-87466849
2012-10-07 18:13:44,277 - DEBUG - Taking top 8 variants by coverage in window 9:87469095-87469096
2012-10-07 18:13:44,444 - DEBUG - Taking top 8 variants by coverage in window 9:87471494-87471495
2012-10-07 18:13:44,491 - DEBUG - Taking top 8 variants by coverage in window 9:87477931-87477932
2012-10-07 18:13:44,658 - DEBUG - Taking top 8 variants by coverage in window 9:87480541-87480542
2012-10-07 18:13:45,009 - DEBUG - Taking top 8 variants by coverage in window 9:87492283-87492298
2012-10-07 18:13:45,597 - DEBUG - Taking top 8 variants by coverage in window 9:87503821-87503824
2012-10-07 18:13:45,849 - DEBUG - Taking top 8 variants by coverage in window 9:87506205-87506206
2012-10-07 18:13:45,870 - DEBUG - Taking top 8 variants by coverage in window 9:87506248-87506249
2012-10-07 18:13:46,064 - DEBUG - Taking top 8 variants by coverage in window 9:87510843-87510844
2012-10-07 18:13:46,551 - DEBUG - Taking top 8 variants by coverage in window 9:87518957-87518958
2012-10-07 18:13:47,392 - DEBUG - Taking top 8 variants by coverage in window 9:87542138-87542147
2012-10-07 18:13:47,417 - DEBUG - Taking top 8 variants by coverage in window 9:87542152-87542153
2012-10-07 18:13:47,693 - DEBUG - Taking top 8 variants by coverage in window 9:87544999-87545000
2012-10-07 18:13:47,712 - DEBUG - Taking top 8 variants by coverage in window 9:87545013-87545014
2012-10-07 18:13:47,733 - DEBUG - Taking top 8 variants by coverage in window 9:87545018-87545019
2012-10-07 18:13:48,129 - DEBUG - Taking top 8 variants by coverage in window 9:87547954-87547955
2012-10-07 18:13:48,150 - DEBUG - Taking top 8 variants by coverage in window 9:87547957-87547958
2012-10-07 18:13:48,599 - DEBUG - Taking top 8 variants by coverage in window 9:87557159-87557160
2012-10-07 18:13:48,812 - DEBUG - Taking top 8 variants by coverage in window 9:87560995-87560998
2012-10-07 18:13:49,008 - DEBUG - Taking top 8 variants by coverage in window 9:87563481-87563482
2012-10-07 18:13:49,182 - DEBUG - Taking top 8 variants by coverage in window 9:87565790-87565791
2012-10-07 18:13:49,359 - DEBUG - Taking top 8 variants by coverage in window 9:87574752-87574753
2012-10-07 18:13:49,628 - DEBUG - Taking top 8 variants by coverage in window 9:87580550-87580551
2012-10-07 18:13:50,108 - DEBUG - Taking top 8 variants by coverage in window 9:87589408-87589409
2012-10-07 18:13:50,573 - DEBUG - Taking top 8 variants by coverage in window 9:87599036-87599037
2012-10-07 18:13:50,610 - DEBUG - Taking top 8 variants by coverage in window 9:87599464-87599466
2012-10-07 18:13:51,221 - DEBUG - Taking top 8 variants by coverage in window 9:87607106-87607107
2012-10-07 18:13:51,451 - DEBUG - Taking top 8 variants by coverage in window 9:87609015-87609016
2012-10-07 18:13:51,460 - DEBUG - Taking top 8 variants by coverage in window 9:87609032-87609033
2012-10-07 18:13:51,511 - DEBUG - Taking top 8 variants by coverage in window 9:87609555-87609561
2012-10-07 18:13:51,605 - DEBUG - Taking top 8 variants by coverage in window 9:87610785-87610787
2012-10-07 18:13:52,126 - DEBUG - Taking top 8 variants by coverage in window 9:87623737-87623738
2012-10-07 18:13:53,249 - DEBUG - Taking top 8 variants by coverage in window 9:87648204-87648213
2012-10-07 18:13:54,094 - DEBUG - Taking top 8 variants by coverage in window 9:87664248-87664249
2012-10-07 18:13:54,481 - DEBUG - Taking top 8 variants by coverage in window 9:87679656-87679657
2012-10-07 18:13:54,590 - DEBUG - Taking top 8 variants by coverage in window 9:87681744-87681745
2012-10-07 18:13:54,729 - DEBUG - Taking top 8 variants by coverage in window 9:87682735-87682736
2012-10-07 18:13:54,734 - DEBUG - Taking top 8 variants by coverage in window 9:87682736-87682739
2012-10-07 18:13:54,966 - DEBUG - Taking top 8 variants by coverage in window 9:87691916-87691918
2012-10-07 18:13:55,311 - DEBUG - Taking top 8 variants by coverage in window 9:87699888-87699889
2012-10-07 18:13:56,635 - DEBUG - Taking top 8 variants by coverage in window 9:87737699-87737700
2012-10-07 18:13:57,088 - DEBUG - Taking top 8 variants by coverage in window 9:87744770-87744771
2012-10-07 18:13:57,949 - DEBUG - Taking top 8 variants by coverage in window 9:87754804-87754810
2012-10-07 18:13:58,760 - DEBUG - Taking top 8 variants by coverage in window 9:87765946-87765947
2012-10-07 18:13:59,124 - DEBUG - Taking top 8 variants by coverage in window 9:87771835-87771847
2012-10-07 18:13:59,974 - DEBUG - Taking top 8 variants by coverage in window 9:87773168-87773169
2012-10-07 18:14:01,011 - DEBUG - Taking top 8 variants by coverage in window 9:87789409-87789410
2012-10-07 18:14:01,095 - DEBUG - Taking top 8 variants by coverage in window 9:87790874-87790875
2012-10-07 18:14:01,679 - DEBUG - Taking top 8 variants by coverage in window 9:87802123-87802125
2012-10-07 18:14:01,705 - DEBUG - Taking top 8 variants by coverage in window 9:87802127-87802136
2012-10-07 18:14:02,600 - DEBUG - Taking top 8 variants by coverage in window 9:87813370-87813371
2012-10-07 18:14:03,992 - DEBUG - Taking top 8 variants by coverage in window 9:87837199-87837200
2012-10-07 18:14:04,129 - DEBUG - Taking top 8 variants by coverage in window 9:87838775-87838799
2012-10-07 18:14:04,265 - DEBUG - Taking top 8 variants by coverage in window 9:87840359-87840361
2012-10-07 18:14:04,287 - DEBUG - Taking top 8 variants by coverage in window 9:87847204-87847221
2012-10-07 18:14:04,451 - DEBUG - Taking top 8 variants by coverage in window 9:87848888-87848891
2012-10-07 18:14:04,475 - DEBUG - Taking top 8 variants by coverage in window 9:87848924-87848925
2012-10-07 18:14:05,495 - DEBUG - Taking top 8 variants by coverage in window 9:87859224-87859225
2012-10-07 18:14:06,680 - DEBUG - Taking top 8 variants by coverage in window 9:87872042-87872043
2012-10-07 18:14:06,910 - DEBUG - Taking top 8 variants by coverage in window 9:87876487-87876491
2012-10-07 18:14:07,660 - DEBUG - Taking top 8 variants by coverage in window 9:87887212-87887213
2012-10-07 18:14:07,890 - DEBUG - Taking top 8 variants by coverage in window 9:87892485-87892486
2012-10-07 18:14:07,901 - DEBUG - Taking top 8 variants by coverage in window 9:87892512-87892513
2012-10-07 18:14:08,244 - DEBUG - Taking top 8 variants by coverage in window 9:87897431-87897434
2012-10-07 18:14:08,294 - DEBUG - Taking top 8 variants by coverage in window 9:87897442-87897443
2012-10-07 18:14:08,325 - DEBUG - Taking top 8 variants by coverage in window 9:87897494-87897495
2012-10-07 18:14:08,361 - DEBUG - Taking top 8 variants by coverage in window 9:87897509-87897513
2012-10-07 18:14:08,952 - DEBUG - Taking top 8 variants by coverage in window 9:87910944-87910957
2012-10-07 18:14:09,022 - DEBUG - Taking top 8 variants by coverage in window 9:87911455-87911456
2012-10-07 18:14:09,318 - DEBUG - Taking top 8 variants by coverage in window 9:87915088-87915089
2012-10-07 18:14:10,400 - DEBUG - Taking top 8 variants by coverage in window 9:87930316-87930318
2012-10-07 18:14:10,419 - DEBUG - Taking top 8 variants by coverage in window 9:87930324-87930325
2012-10-07 18:14:12,701 - DEBUG - Taking top 8 variants by coverage in window 9:87960600-87960601
2012-10-07 18:14:13,086 - DEBUG - Taking top 8 variants by coverage in window 9:87966382-87966383
2012-10-07 18:14:13,232 - DEBUG - Taking top 8 variants by coverage in window 9:87967760-87967768
2012-10-07 18:14:14,629 - DEBUG - Taking top 8 variants by coverage in window 9:87993844-87993845
2012-10-07 18:14:14,677 - DEBUG - Taking top 8 variants by coverage in window 9:87993888-87993889
2012-10-07 18:14:14,874 - DEBUG - Taking top 8 variants by coverage in window 9:87997262-87997279
2012-10-07 18:14:16,044 - DEBUG - Read 94526 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 18:14:16,278 - DEBUG - Read 67203 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 18:14:16,533 - DEBUG - Read 79122 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 18:14:16,860 - DEBUG - Read 89294 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 18:14:17,130 - DEBUG - Read 74221 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 18:14:17,375 - DEBUG - Read 71718 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 18:14:17,655 - DEBUG - Read 80837 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 18:14:17,921 - DEBUG - Read 70641 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 18:14:18,149 - DEBUG - Read 64578 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 18:14:18,378 - DEBUG - Read 63133 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 18:14:18,633 - DEBUG - Read 73362 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 18:14:18,856 - DEBUG - Read 65292 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 18:14:19,137 - DEBUG - Read 75819 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 18:14:19,397 - DEBUG - Read 78304 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 18:14:19,736 - DEBUG - Read 86159 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 18:14:19,972 - DEBUG - Read 63206 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 18:14:20,219 - DEBUG - Read 76048 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 18:14:20,454 - DEBUG - Read 68322 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 18:14:20,758 - DEBUG - Read 84823 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 18:14:21,007 - DEBUG - Read 67448 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 18:14:21,107 - DEBUG - Detected 22376 variants in 94526 reads
2012-10-07 18:14:21,231 - DEBUG - Detected 29588 variants in 67203 reads
2012-10-07 18:14:21,389 - DEBUG - Detected 35751 variants in 79122 reads
2012-10-07 18:14:21,577 - DEBUG - Detected 42241 variants in 89294 reads
2012-10-07 18:14:21,778 - DEBUG - Detected 47781 variants in 74221 reads
2012-10-07 18:14:22,001 - DEBUG - Detected 53060 variants in 71718 reads
2012-10-07 18:14:22,259 - DEBUG - Detected 63537 variants in 80837 reads
2012-10-07 18:14:22,552 - DEBUG - Detected 67470 variants in 70641 reads
2012-10-07 18:14:22,878 - DEBUG - Detected 71331 variants in 64578 reads
2012-10-07 18:14:23,198 - DEBUG - Detected 74846 variants in 63133 reads
2012-10-07 18:14:23,542 - DEBUG - Detected 78174 variants in 73362 reads
2012-10-07 18:14:23,892 - DEBUG - Detected 81161 variants in 65292 reads
2012-10-07 18:14:24,264 - DEBUG - Detected 85034 variants in 75819 reads
2012-10-07 18:14:24,658 - DEBUG - Detected 88613 variants in 78304 reads
2012-10-07 18:14:25,075 - DEBUG - Detected 94036 variants in 86159 reads
2012-10-07 18:14:25,496 - DEBUG - Detected 96966 variants in 63206 reads
2012-10-07 18:14:25,970 - DEBUG - Detected 99450 variants in 76048 reads
2012-10-07 18:14:26,421 - DEBUG - Detected 102343 variants in 68322 reads
2012-10-07 18:14:26,891 - DEBUG - Detected 106354 variants in 84823 reads
2012-10-07 18:14:27,366 - DEBUG - Detected 109448 variants in 67448 reads
2012-10-07 18:14:28,128 - DEBUG - Taking top 8 variants by coverage in window 9:88000667-88000673
2012-10-07 18:14:28,509 - DEBUG - Taking top 8 variants by coverage in window 9:88003719-88003720
2012-10-07 18:14:29,004 - DEBUG - Taking top 8 variants by coverage in window 9:88009975-88009976
2012-10-07 18:14:29,096 - DEBUG - Taking top 8 variants by coverage in window 9:88010486-88010487
2012-10-07 18:14:29,268 - DEBUG - Taking top 8 variants by coverage in window 9:88013442-88013443
2012-10-07 18:14:29,417 - DEBUG - Taking top 8 variants by coverage in window 9:88014667-88014668
2012-10-07 18:14:30,212 - DEBUG - Taking top 8 variants by coverage in window 9:88024433-88024438
2012-10-07 18:14:30,487 - DEBUG - Taking top 8 variants by coverage in window 9:88034152-88034169
2012-10-07 18:14:30,739 - DEBUG - Taking top 8 variants by coverage in window 9:88036883-88036885
2012-10-07 18:14:31,351 - DEBUG - Taking top 8 variants by coverage in window 9:88049176-88049217
2012-10-07 18:14:32,623 - DEBUG - Taking top 8 variants by coverage in window 9:88070681-88070682
2012-10-07 18:14:32,671 - DEBUG - Taking top 8 variants by coverage in window 9:88070781-88070782
2012-10-07 18:14:32,914 - DEBUG - Taking top 8 variants by coverage in window 9:88078268-88078269
2012-10-07 18:14:33,118 - DEBUG - Taking top 8 variants by coverage in window 9:88083644-88083646
2012-10-07 18:14:33,218 - DEBUG - Taking top 8 variants by coverage in window 9:88084700-88084701
2012-10-07 18:14:33,453 - DEBUG - Taking top 8 variants by coverage in window 9:88088371-88088372
2012-10-07 18:14:33,594 - DEBUG - Taking top 8 variants by coverage in window 9:88090512-88090513
2012-10-07 18:14:34,438 - DEBUG - Taking top 8 variants by coverage in window 9:88112523-88112524
2012-10-07 18:14:34,788 - DEBUG - Taking top 8 variants by coverage in window 9:88118560-88118561
2012-10-07 18:14:34,905 - DEBUG - Taking top 8 variants by coverage in window 9:88118630-88118631
2012-10-07 18:14:35,081 - DEBUG - Taking top 8 variants by coverage in window 9:88119316-88119322
2012-10-07 18:14:36,104 - DEBUG - Taking top 8 variants by coverage in window 9:88121466-88121467
2012-10-07 18:14:36,344 - DEBUG - Taking top 8 variants by coverage in window 9:88124621-88124622
2012-10-07 18:14:36,646 - DEBUG - Taking top 8 variants by coverage in window 9:88127882-88127883
2012-10-07 18:14:36,778 - DEBUG - Taking top 8 variants by coverage in window 9:88129003-88129004
2012-10-07 18:14:36,914 - DEBUG - Taking top 8 variants by coverage in window 9:88130341-88130343
2012-10-07 18:14:36,944 - DEBUG - Taking top 8 variants by coverage in window 9:88131418-88131419
2012-10-07 18:14:36,976 - DEBUG - Taking top 8 variants by coverage in window 9:88131451-88131453
2012-10-07 18:14:37,787 - DEBUG - Taking top 8 variants by coverage in window 9:88141387-88141392
2012-10-07 18:14:38,135 - DEBUG - Taking top 8 variants by coverage in window 9:88145329-88145330
2012-10-07 18:14:38,147 - DEBUG - Taking top 8 variants by coverage in window 9:88145342-88145343
2012-10-07 18:14:38,493 - DEBUG - Taking top 8 variants by coverage in window 9:88147868-88147875
2012-10-07 18:14:39,067 - DEBUG - Taking top 8 variants by coverage in window 9:88147978-88147986
2012-10-07 18:14:39,106 - DEBUG - Taking top 8 variants by coverage in window 9:88148030-88148038
2012-10-07 18:14:39,251 - DEBUG - Taking top 8 variants by coverage in window 9:88148134-88148138
2012-10-07 18:14:39,554 - DEBUG - Taking top 8 variants by coverage in window 9:88148166-88148168
2012-10-07 18:14:40,581 - DEBUG - Taking top 8 variants by coverage in window 9:88161581-88161582
2012-10-07 18:14:40,708 - DEBUG - Taking top 8 variants by coverage in window 9:88163418-88163419
2012-10-07 18:14:41,356 - DEBUG - Taking top 8 variants by coverage in window 9:88177321-88177323
2012-10-07 18:14:41,414 - DEBUG - Taking top 8 variants by coverage in window 9:88177679-88177680
2012-10-07 18:14:41,852 - DEBUG - Taking top 8 variants by coverage in window 9:88186022-88186023
2012-10-07 18:14:42,227 - DEBUG - Taking top 8 variants by coverage in window 9:88189831-88189832
2012-10-07 18:14:42,246 - DEBUG - Taking top 8 variants by coverage in window 9:88189862-88189863
2012-10-07 18:14:42,636 - DEBUG - Taking top 8 variants by coverage in window 9:88194319-88194320
2012-10-07 18:14:42,670 - DEBUG - Taking top 8 variants by coverage in window 9:88195679-88195680
2012-10-07 18:14:43,850 - DEBUG - Taking top 8 variants by coverage in window 9:88209200-88209202
2012-10-07 18:14:44,048 - DEBUG - Taking top 8 variants by coverage in window 9:88211330-88211331
2012-10-07 18:14:44,205 - DEBUG - Taking top 8 variants by coverage in window 9:88212581-88212582
2012-10-07 18:14:44,444 - DEBUG - Taking top 8 variants by coverage in window 9:88219478-88219479
2012-10-07 18:14:44,561 - DEBUG - Taking top 8 variants by coverage in window 9:88221468-88221483
2012-10-07 18:14:44,776 - DEBUG - Taking top 8 variants by coverage in window 9:88225393-88225394
2012-10-07 18:14:45,307 - DEBUG - Taking top 8 variants by coverage in window 9:88231102-88231103
2012-10-07 18:14:45,342 - DEBUG - Taking top 8 variants by coverage in window 9:88231236-88231240
2012-10-07 18:14:45,730 - DEBUG - Taking top 8 variants by coverage in window 9:88235475-88235476
2012-10-07 18:14:46,635 - DEBUG - Taking top 8 variants by coverage in window 9:88249267-88249268
2012-10-07 18:14:46,647 - DEBUG - Taking top 8 variants by coverage in window 9:88249275-88249276
2012-10-07 18:14:46,822 - DEBUG - Taking top 8 variants by coverage in window 9:88252143-88252144
2012-10-07 18:14:47,114 - DEBUG - Taking top 8 variants by coverage in window 9:88255858-88255859
2012-10-07 18:14:47,240 - DEBUG - Taking top 8 variants by coverage in window 9:88257224-88257225
2012-10-07 18:14:47,422 - DEBUG - Taking top 8 variants by coverage in window 9:88261703-88261704
2012-10-07 18:14:47,454 - DEBUG - Taking top 8 variants by coverage in window 9:88262517-88262518
2012-10-07 18:14:47,863 - DEBUG - Taking top 8 variants by coverage in window 9:88268354-88268363
2012-10-07 18:14:48,231 - DEBUG - Taking top 8 variants by coverage in window 9:88273595-88273596
2012-10-07 18:14:48,284 - DEBUG - Taking top 8 variants by coverage in window 9:88273608-88273609
2012-10-07 18:14:48,296 - DEBUG - Taking top 8 variants by coverage in window 9:88273610-88273612
2012-10-07 18:14:48,488 - DEBUG - Taking top 8 variants by coverage in window 9:88276018-88276022
2012-10-07 18:14:48,900 - DEBUG - Taking top 8 variants by coverage in window 9:88281437-88281438
2012-10-07 18:14:48,911 - DEBUG - Taking top 8 variants by coverage in window 9:88281450-88281452
2012-10-07 18:14:49,443 - DEBUG - Taking top 8 variants by coverage in window 9:88291376-88291377
2012-10-07 18:14:49,557 - DEBUG - Taking top 8 variants by coverage in window 9:88292764-88292765
2012-10-07 18:14:50,110 - DEBUG - Taking top 8 variants by coverage in window 9:88298736-88298737
2012-10-07 18:14:50,283 - DEBUG - Taking top 8 variants by coverage in window 9:88301315-88301316
2012-10-07 18:14:50,965 - DEBUG - Taking top 8 variants by coverage in window 9:88309968-88309969
2012-10-07 18:14:51,096 - DEBUG - Taking top 8 variants by coverage in window 9:88311434-88311435
2012-10-07 18:14:51,704 - DEBUG - Taking top 8 variants by coverage in window 9:88322185-88322188
2012-10-07 18:14:51,762 - DEBUG - Taking top 8 variants by coverage in window 9:88322449-88322450
2012-10-07 18:14:51,775 - DEBUG - Taking top 8 variants by coverage in window 9:88322499-88322500
2012-10-07 18:14:51,962 - DEBUG - Taking top 8 variants by coverage in window 9:88325551-88325553
2012-10-07 18:14:52,570 - DEBUG - Taking top 8 variants by coverage in window 9:88331552-88331553
2012-10-07 18:14:52,896 - DEBUG - Taking top 8 variants by coverage in window 9:88340944-88340950
2012-10-07 18:14:53,425 - DEBUG - Taking top 8 variants by coverage in window 9:88360133-88360134
2012-10-07 18:14:53,569 - DEBUG - Taking top 8 variants by coverage in window 9:88362612-88362614
2012-10-07 18:14:53,590 - DEBUG - Taking top 8 variants by coverage in window 9:88362616-88362617
2012-10-07 18:14:54,997 - DEBUG - Taking top 8 variants by coverage in window 9:88394980-88394981
2012-10-07 18:14:55,228 - DEBUG - Taking top 8 variants by coverage in window 9:88397308-88397333
2012-10-07 18:14:55,686 - DEBUG - Taking top 8 variants by coverage in window 9:88401943-88401946
2012-10-07 18:14:55,716 - DEBUG - Taking top 8 variants by coverage in window 9:88402035-88402036
2012-10-07 18:14:55,771 - DEBUG - Taking top 8 variants by coverage in window 9:88402674-88402675
2012-10-07 18:14:57,062 - DEBUG - Taking top 8 variants by coverage in window 9:88425107-88425108
2012-10-07 18:14:57,229 - DEBUG - Taking top 8 variants by coverage in window 9:88425941-88425948
2012-10-07 18:14:57,729 - DEBUG - Taking top 8 variants by coverage in window 9:88433542-88433543
2012-10-07 18:14:57,936 - DEBUG - Taking top 8 variants by coverage in window 9:88435994-88435995
2012-10-07 18:14:58,018 - DEBUG - Taking top 8 variants by coverage in window 9:88437581-88437583
2012-10-07 18:14:58,621 - DEBUG - Taking top 8 variants by coverage in window 9:88450189-88450191
2012-10-07 18:14:58,657 - DEBUG - Taking top 8 variants by coverage in window 9:88450376-88450377
2012-10-07 18:14:58,690 - DEBUG - Taking top 8 variants by coverage in window 9:88450554-88450558
2012-10-07 18:15:00,043 - DEBUG - Taking top 8 variants by coverage in window 9:88472507-88472508
2012-10-07 18:15:00,469 - DEBUG - Taking top 8 variants by coverage in window 9:88478535-88478538
2012-10-07 18:15:01,348 - DEBUG - Taking top 8 variants by coverage in window 9:88495901-88495905
2012-10-07 18:15:04,234 - DEBUG - Taking top 8 variants by coverage in window 9:88542494-88542495
2012-10-07 18:15:07,527 - DEBUG - Taking top 8 variants by coverage in window 9:88602869-88602874
2012-10-07 18:15:10,942 - DEBUG - Taking top 8 variants by coverage in window 9:88636966-88636967
2012-10-07 18:15:12,149 - DEBUG - Taking top 8 variants by coverage in window 9:88656263-88656291
2012-10-07 18:15:13,058 - DEBUG - Taking top 8 variants by coverage in window 9:88669231-88669234
2012-10-07 18:15:14,371 - DEBUG - Taking top 8 variants by coverage in window 9:88728185-88728187
2012-10-07 18:15:14,428 - DEBUG - Taking top 8 variants by coverage in window 9:88728205-88728207
2012-10-07 18:15:15,028 - DEBUG - Taking top 8 variants by coverage in window 9:88736424-88736427
2012-10-07 18:15:18,118 - DEBUG - Taking top 8 variants by coverage in window 9:88811768-88811773
2012-10-07 18:15:18,739 - DEBUG - Taking top 8 variants by coverage in window 9:88827720-88827721
2012-10-07 18:15:18,935 - DEBUG - Taking top 8 variants by coverage in window 9:88831931-88831932
2012-10-07 18:15:18,987 - DEBUG - Taking top 8 variants by coverage in window 9:88831934-88831935
2012-10-07 18:15:19,664 - DEBUG - Taking top 8 variants by coverage in window 9:88849142-88849143
2012-10-07 18:15:20,015 - DEBUG - Taking top 8 variants by coverage in window 9:88854613-88854614
2012-10-07 18:15:21,393 - DEBUG - Taking top 8 variants by coverage in window 9:88879317-88879327
2012-10-07 18:15:21,437 - DEBUG - Taking top 8 variants by coverage in window 9:88879377-88879378
2012-10-07 18:15:23,133 - DEBUG - Taking top 8 variants by coverage in window 9:88933777-88933778
2012-10-07 18:15:23,231 - DEBUG - Taking top 8 variants by coverage in window 9:88934778-88934779
2012-10-07 18:15:23,373 - DEBUG - Taking top 8 variants by coverage in window 9:88946879-88946881
2012-10-07 18:15:25,485 - DEBUG - Taking top 8 variants by coverage in window 9:88995953-88995965
2012-10-07 18:15:26,987 - DEBUG - Read 96370 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 18:15:27,233 - DEBUG - Read 96751 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 18:15:27,496 - DEBUG - Read 112166 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 18:15:27,792 - DEBUG - Read 113093 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 18:15:28,075 - DEBUG - Read 106243 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 18:15:28,327 - DEBUG - Read 101194 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 18:15:28,590 - DEBUG - Read 107762 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 18:15:28,847 - DEBUG - Read 97301 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 18:15:29,083 - DEBUG - Read 92557 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 18:15:29,327 - DEBUG - Read 93627 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 18:15:29,585 - DEBUG - Read 102370 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 18:15:29,844 - DEBUG - Read 90372 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 18:15:30,096 - DEBUG - Read 96335 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 18:15:30,342 - DEBUG - Read 103177 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 18:15:30,622 - DEBUG - Read 115129 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 18:15:30,854 - DEBUG - Read 87107 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 18:15:31,109 - DEBUG - Read 107837 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 18:15:31,357 - DEBUG - Read 99840 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 18:15:31,597 - DEBUG - Read 93772 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 18:15:31,836 - DEBUG - Read 89484 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 18:15:31,938 - DEBUG - Detected 22912 variants in 96370 reads
2012-10-07 18:15:32,090 - DEBUG - Detected 32316 variants in 96751 reads
2012-10-07 18:15:32,304 - DEBUG - Detected 41067 variants in 112166 reads
2012-10-07 18:15:32,536 - DEBUG - Detected 47595 variants in 113093 reads
2012-10-07 18:15:32,787 - DEBUG - Detected 53194 variants in 106243 reads
2012-10-07 18:15:33,061 - DEBUG - Detected 58170 variants in 101194 reads
2012-10-07 18:15:33,368 - DEBUG - Detected 72134 variants in 107762 reads
2012-10-07 18:15:33,722 - DEBUG - Detected 76958 variants in 97301 reads
2012-10-07 18:15:34,092 - DEBUG - Detected 81904 variants in 92557 reads
2012-10-07 18:15:34,513 - DEBUG - Detected 86639 variants in 93627 reads
2012-10-07 18:15:34,933 - DEBUG - Detected 90639 variants in 102370 reads
2012-10-07 18:15:35,359 - DEBUG - Detected 94061 variants in 90372 reads
2012-10-07 18:15:35,802 - DEBUG - Detected 97817 variants in 96335 reads
2012-10-07 18:15:36,271 - DEBUG - Detected 101978 variants in 103177 reads
2012-10-07 18:15:36,771 - DEBUG - Detected 108844 variants in 115129 reads
2012-10-07 18:15:37,277 - DEBUG - Detected 113205 variants in 87107 reads
2012-10-07 18:15:37,869 - DEBUG - Detected 116751 variants in 107837 reads
2012-10-07 18:15:38,422 - DEBUG - Detected 120384 variants in 99840 reads
2012-10-07 18:15:38,991 - DEBUG - Detected 124245 variants in 93772 reads
2012-10-07 18:15:39,572 - DEBUG - Detected 128358 variants in 89484 reads
2012-10-07 18:15:40,601 - DEBUG - Taking top 8 variants by coverage in window 9:89006936-89006937
2012-10-07 18:15:42,899 - DEBUG - Taking top 8 variants by coverage in window 9:89062306-89062308
2012-10-07 18:15:42,953 - DEBUG - Taking top 8 variants by coverage in window 9:89062860-89062892
2012-10-07 18:15:44,329 - DEBUG - Taking top 8 variants by coverage in window 9:89100017-89100029
2012-10-07 18:15:44,885 - DEBUG - Taking top 8 variants by coverage in window 9:89104282-89104283
2012-10-07 18:15:44,978 - DEBUG - Taking top 8 variants by coverage in window 9:89104332-89104333
2012-10-07 18:15:45,531 - DEBUG - Taking top 8 variants by coverage in window 9:89106224-89106225
2012-10-07 18:15:47,156 - DEBUG - Taking top 8 variants by coverage in window 9:89120638-89120639
2012-10-07 18:15:47,877 - DEBUG - Taking top 8 variants by coverage in window 9:89124678-89124679
2012-10-07 18:15:48,809 - DEBUG - Taking top 8 variants by coverage in window 9:89131779-89131782
2012-10-07 18:15:49,234 - DEBUG - Taking top 8 variants by coverage in window 9:89138607-89138608
2012-10-07 18:15:49,870 - DEBUG - Taking top 8 variants by coverage in window 9:89147132-89147138
2012-10-07 18:15:50,372 - DEBUG - Taking top 8 variants by coverage in window 9:89158141-89158144
2012-10-07 18:15:50,453 - DEBUG - Taking top 8 variants by coverage in window 9:89158251-89158254
2012-10-07 18:15:50,476 - DEBUG - Taking top 8 variants by coverage in window 9:89158255-89158257
2012-10-07 18:15:50,651 - DEBUG - Taking top 8 variants by coverage in window 9:89159805-89159807
2012-10-07 18:15:51,041 - DEBUG - Taking top 8 variants by coverage in window 9:89166945-89166949
2012-10-07 18:15:52,030 - DEBUG - Taking top 8 variants by coverage in window 9:89178683-89178689
2012-10-07 18:15:53,350 - DEBUG - Taking top 8 variants by coverage in window 9:89193906-89193907
2012-10-07 18:15:54,726 - DEBUG - Taking top 8 variants by coverage in window 9:89213414-89213415
2012-10-07 18:15:55,039 - DEBUG - Taking top 8 variants by coverage in window 9:89216197-89216203
2012-10-07 18:15:56,077 - DEBUG - Taking top 8 variants by coverage in window 9:89230652-89230653
2012-10-07 18:15:56,107 - DEBUG - Taking top 8 variants by coverage in window 9:89230719-89230720
2012-10-07 18:15:56,195 - DEBUG - Taking top 8 variants by coverage in window 9:89231361-89231362
2012-10-07 18:15:56,729 - DEBUG - Taking top 8 variants by coverage in window 9:89260829-89260830
2012-10-07 18:15:57,413 - DEBUG - Taking top 8 variants by coverage in window 9:89268610-89268612
2012-10-07 18:15:57,455 - DEBUG - Taking top 8 variants by coverage in window 9:89268622-89268623
2012-10-07 18:15:57,487 - DEBUG - Taking top 8 variants by coverage in window 9:89268625-89268626
2012-10-07 18:15:58,227 - DEBUG - Taking top 8 variants by coverage in window 9:89276771-89276772
2012-10-07 18:15:58,273 - DEBUG - Taking top 8 variants by coverage in window 9:89276845-89276847
2012-10-07 18:15:58,548 - DEBUG - Taking top 8 variants by coverage in window 9:89279025-89279026
2012-10-07 18:15:59,071 - DEBUG - Taking top 8 variants by coverage in window 9:89287198-89287208
2012-10-07 18:15:59,210 - DEBUG - Taking top 8 variants by coverage in window 9:89287226-89287240
2012-10-07 18:15:59,312 - DEBUG - Taking top 8 variants by coverage in window 9:89287297-89287298
2012-10-07 18:16:01,579 - DEBUG - Taking top 8 variants by coverage in window 9:89330822-89330825
2012-10-07 18:16:02,643 - DEBUG - Taking top 8 variants by coverage in window 9:89343018-89343019
2012-10-07 18:16:02,929 - DEBUG - Taking top 8 variants by coverage in window 9:89346132-89346133
2012-10-07 18:16:03,229 - DEBUG - Taking top 8 variants by coverage in window 9:89348881-89348889
2012-10-07 18:16:03,518 - DEBUG - Taking top 8 variants by coverage in window 9:89350965-89350966
2012-10-07 18:16:04,368 - DEBUG - Taking top 8 variants by coverage in window 9:89359803-89359804
2012-10-07 18:16:04,384 - DEBUG - Taking top 8 variants by coverage in window 9:89359829-89359830
2012-10-07 18:16:04,456 - DEBUG - Taking top 8 variants by coverage in window 9:89360887-89360888
2012-10-07 18:16:04,866 - DEBUG - Taking top 8 variants by coverage in window 9:89367106-89367110
2012-10-07 18:16:04,900 - DEBUG - Taking top 8 variants by coverage in window 9:89373537-89373538
2012-10-07 18:16:04,933 - DEBUG - Taking top 8 variants by coverage in window 9:89373975-89373976
2012-10-07 18:16:05,394 - DEBUG - Taking top 8 variants by coverage in window 9:89385027-89385049
2012-10-07 18:16:05,424 - DEBUG - Taking top 8 variants by coverage in window 9:89385105-89385106
2012-10-07 18:16:05,826 - DEBUG - Taking top 8 variants by coverage in window 9:89388935-89388937
2012-10-07 18:16:06,042 - DEBUG - Taking top 8 variants by coverage in window 9:89394143-89394149
2012-10-07 18:16:06,835 - DEBUG - Taking top 8 variants by coverage in window 9:89399727-89399728
2012-10-07 18:16:07,075 - DEBUG - Taking top 8 variants by coverage in window 9:89402635-89402638
2012-10-07 18:16:07,848 - DEBUG - Taking top 8 variants by coverage in window 9:89412461-89412462
2012-10-07 18:16:07,874 - DEBUG - Taking top 8 variants by coverage in window 9:89412505-89412506
2012-10-07 18:16:10,431 - DEBUG - Taking top 8 variants by coverage in window 9:89438669-89438670
2012-10-07 18:16:11,343 - DEBUG - Taking top 8 variants by coverage in window 9:89449133-89449149
2012-10-07 18:16:11,672 - DEBUG - Taking top 8 variants by coverage in window 9:89452280-89452281
2012-10-07 18:16:11,789 - DEBUG - Taking top 8 variants by coverage in window 9:89453838-89453839
2012-10-07 18:16:11,875 - DEBUG - Taking top 8 variants by coverage in window 9:89454245-89454246
2012-10-07 18:16:11,899 - DEBUG - Taking top 8 variants by coverage in window 9:89454272-89454273
2012-10-07 18:16:12,111 - DEBUG - Taking top 8 variants by coverage in window 9:89456079-89456080
2012-10-07 18:16:12,350 - DEBUG - Taking top 8 variants by coverage in window 9:89459279-89459287
2012-10-07 18:16:13,494 - DEBUG - Taking top 8 variants by coverage in window 9:89472239-89472243
2012-10-07 18:16:14,164 - DEBUG - Taking top 8 variants by coverage in window 9:89484174-89484175
2012-10-07 18:16:15,027 - DEBUG - Taking top 8 variants by coverage in window 9:89493943-89493944
2012-10-07 18:16:16,533 - DEBUG - Taking top 8 variants by coverage in window 9:89515075-89515079
2012-10-07 18:16:19,244 - DEBUG - Taking top 8 variants by coverage in window 9:89549503-89549504
2012-10-07 18:16:19,441 - DEBUG - Taking top 8 variants by coverage in window 9:89550716-89550717
2012-10-07 18:16:19,685 - DEBUG - Taking top 8 variants by coverage in window 9:89552524-89552525
2012-10-07 18:16:21,137 - DEBUG - Taking top 8 variants by coverage in window 9:89574647-89574648
2012-10-07 18:16:21,214 - DEBUG - Taking top 8 variants by coverage in window 9:89575282-89575284
2012-10-07 18:16:21,342 - DEBUG - Taking top 8 variants by coverage in window 9:89575729-89575732
2012-10-07 18:16:21,615 - DEBUG - Taking top 8 variants by coverage in window 9:89580538-89580560
2012-10-07 18:16:22,144 - DEBUG - Taking top 8 variants by coverage in window 9:89587262-89587263
2012-10-07 18:16:22,326 - DEBUG - Taking top 8 variants by coverage in window 9:89588843-89588844
2012-10-07 18:16:22,399 - DEBUG - Taking top 8 variants by coverage in window 9:89588934-89588935
2012-10-07 18:16:22,637 - DEBUG - Taking top 8 variants by coverage in window 9:89593429-89593430
2012-10-07 18:16:23,028 - DEBUG - Taking top 8 variants by coverage in window 9:89596054-89596059
2012-10-07 18:16:23,051 - DEBUG - Taking top 8 variants by coverage in window 9:89596061-89596062
2012-10-07 18:16:23,142 - DEBUG - Taking top 8 variants by coverage in window 9:89597156-89597158
2012-10-07 18:16:23,208 - DEBUG - Taking top 8 variants by coverage in window 9:89598090-89598091
2012-10-07 18:16:23,243 - DEBUG - Taking top 8 variants by coverage in window 9:89598148-89598149
2012-10-07 18:16:23,297 - DEBUG - Taking top 8 variants by coverage in window 9:89598712-89598713
2012-10-07 18:16:23,335 - DEBUG - Taking top 8 variants by coverage in window 9:89599145-89599146
2012-10-07 18:16:23,555 - DEBUG - Taking top 8 variants by coverage in window 9:89603786-89603787
2012-10-07 18:16:23,646 - DEBUG - Taking top 8 variants by coverage in window 9:89604506-89604507
2012-10-07 18:16:23,717 - DEBUG - Taking top 8 variants by coverage in window 9:89605098-89605101
2012-10-07 18:16:23,729 - DEBUG - Taking top 8 variants by coverage in window 9:89605103-89605104
2012-10-07 18:16:23,843 - DEBUG - Taking top 8 variants by coverage in window 9:89606131-89606135
2012-10-07 18:16:24,061 - DEBUG - Taking top 8 variants by coverage in window 9:89609164-89609165
2012-10-07 18:16:24,801 - DEBUG - Taking top 8 variants by coverage in window 9:89618080-89618081
2012-10-07 18:16:25,003 - DEBUG - Taking top 8 variants by coverage in window 9:89621046-89621047
2012-10-07 18:16:25,305 - DEBUG - Taking top 8 variants by coverage in window 9:89626979-89626980
2012-10-07 18:16:26,353 - DEBUG - Taking top 8 variants by coverage in window 9:89643250-89643251
2012-10-07 18:16:26,477 - DEBUG - Taking top 8 variants by coverage in window 9:89645108-89645109
2012-10-07 18:16:27,199 - DEBUG - Taking top 8 variants by coverage in window 9:89655325-89655326
2012-10-07 18:16:27,337 - DEBUG - Taking top 8 variants by coverage in window 9:89658680-89658681
2012-10-07 18:16:28,488 - DEBUG - Taking top 8 variants by coverage in window 9:89676461-89676462
2012-10-07 18:16:28,932 - DEBUG - Taking top 8 variants by coverage in window 9:89680629-89680630
2012-10-07 18:16:28,948 - DEBUG - Taking top 8 variants by coverage in window 9:89680631-89680632
2012-10-07 18:16:29,289 - DEBUG - Taking top 8 variants by coverage in window 9:89684490-89684494
2012-10-07 18:16:29,396 - DEBUG - Taking top 8 variants by coverage in window 9:89685647-89685648
2012-10-07 18:16:29,897 - DEBUG - Taking top 8 variants by coverage in window 9:89690923-89690924
2012-10-07 18:16:31,088 - DEBUG - Taking top 8 variants by coverage in window 9:89701072-89701073
2012-10-07 18:16:31,316 - DEBUG - Taking top 8 variants by coverage in window 9:89703331-89703332
2012-10-07 18:16:31,664 - DEBUG - Taking top 8 variants by coverage in window 9:89707716-89707719
2012-10-07 18:16:31,785 - DEBUG - Taking top 8 variants by coverage in window 9:89709225-89709227
2012-10-07 18:16:31,879 - DEBUG - Taking top 8 variants by coverage in window 9:89710498-89710501
2012-10-07 18:16:32,038 - DEBUG - Taking top 8 variants by coverage in window 9:89713278-89713279
2012-10-07 18:16:32,534 - DEBUG - Taking top 8 variants by coverage in window 9:89722532-89722533
2012-10-07 18:16:32,611 - DEBUG - Taking top 8 variants by coverage in window 9:89723782-89723784
2012-10-07 18:16:33,779 - DEBUG - Taking top 8 variants by coverage in window 9:89751679-89751680
2012-10-07 18:16:34,153 - DEBUG - Taking top 8 variants by coverage in window 9:89760902-89760903
2012-10-07 18:16:34,333 - DEBUG - Taking top 8 variants by coverage in window 9:89766350-89766356
2012-10-07 18:16:34,963 - DEBUG - Taking top 8 variants by coverage in window 9:89767292-89767293
2012-10-07 18:16:34,982 - DEBUG - Taking top 8 variants by coverage in window 9:89767295-89767296
2012-10-07 18:16:35,579 - DEBUG - Taking top 8 variants by coverage in window 9:89782103-89782104
2012-10-07 18:16:35,612 - DEBUG - Taking top 8 variants by coverage in window 9:89782134-89782135
2012-10-07 18:16:35,630 - DEBUG - Taking top 8 variants by coverage in window 9:89782135-89782136
2012-10-07 18:16:35,849 - DEBUG - Taking top 8 variants by coverage in window 9:89784697-89784698
2012-10-07 18:16:35,862 - DEBUG - Taking top 8 variants by coverage in window 9:89784709-89784710
2012-10-07 18:16:35,924 - DEBUG - Taking top 8 variants by coverage in window 9:89785326-89785327
2012-10-07 18:16:36,126 - DEBUG - Taking top 8 variants by coverage in window 9:89791734-89791735
2012-10-07 18:16:36,174 - DEBUG - Taking top 8 variants by coverage in window 9:89791802-89791805
2012-10-07 18:16:36,198 - DEBUG - Taking top 8 variants by coverage in window 9:89791807-89791816
2012-10-07 18:16:36,859 - DEBUG - Taking top 8 variants by coverage in window 9:89803426-89803427
2012-10-07 18:16:37,313 - DEBUG - Taking top 8 variants by coverage in window 9:89817234-89817237
2012-10-07 18:16:37,346 - DEBUG - Taking top 8 variants by coverage in window 9:89817246-89817249
2012-10-07 18:16:38,124 - DEBUG - Taking top 8 variants by coverage in window 9:89836497-89836498
2012-10-07 18:16:38,276 - DEBUG - Taking top 8 variants by coverage in window 9:89841244-89841251
2012-10-07 18:16:38,723 - DEBUG - Taking top 8 variants by coverage in window 9:89847606-89847607
2012-10-07 18:16:38,963 - DEBUG - Taking top 8 variants by coverage in window 9:89852983-89852999
2012-10-07 18:16:39,680 - DEBUG - Taking top 8 variants by coverage in window 9:89853229-89853230
2012-10-07 18:16:39,867 - DEBUG - Taking top 8 variants by coverage in window 9:89854224-89854225
2012-10-07 18:16:39,917 - DEBUG - Taking top 8 variants by coverage in window 9:89854411-89854412
2012-10-07 18:16:40,005 - DEBUG - Taking top 8 variants by coverage in window 9:89854696-89854698
2012-10-07 18:16:40,108 - DEBUG - Taking top 8 variants by coverage in window 9:89854848-89854849
2012-10-07 18:16:41,296 - DEBUG - Taking top 8 variants by coverage in window 9:89855505-89855506
2012-10-07 18:16:41,397 - DEBUG - Taking top 8 variants by coverage in window 9:89855678-89855679
2012-10-07 18:16:41,749 - DEBUG - Taking top 8 variants by coverage in window 9:89857754-89857755
2012-10-07 18:16:41,780 - DEBUG - Taking top 8 variants by coverage in window 9:89858040-89858041
2012-10-07 18:16:42,000 - DEBUG - Taking top 8 variants by coverage in window 9:89858701-89858702
2012-10-07 18:16:42,017 - DEBUG - Taking top 8 variants by coverage in window 9:89858702-89858703
2012-10-07 18:16:44,039 - DEBUG - Taking top 8 variants by coverage in window 9:89892075-89892078
2012-10-07 18:16:44,933 - DEBUG - Taking top 8 variants by coverage in window 9:89903900-89903919
2012-10-07 18:16:44,949 - DEBUG - Taking top 8 variants by coverage in window 9:89903925-89903926
2012-10-07 18:16:45,022 - DEBUG - Taking top 8 variants by coverage in window 9:89903953-89903958
2012-10-07 18:16:45,112 - DEBUG - Taking top 8 variants by coverage in window 9:89904511-89904512
2012-10-07 18:16:45,133 - DEBUG - Taking top 8 variants by coverage in window 9:89904536-89904537
2012-10-07 18:16:45,269 - DEBUG - Taking top 8 variants by coverage in window 9:89907281-89907282
2012-10-07 18:16:45,481 - DEBUG - Taking top 8 variants by coverage in window 9:89910374-89910375
2012-10-07 18:16:45,955 - DEBUG - Taking top 8 variants by coverage in window 9:89918374-89918375
2012-10-07 18:16:45,969 - DEBUG - Taking top 8 variants by coverage in window 9:89918378-89918379
2012-10-07 18:16:46,635 - DEBUG - Taking top 8 variants by coverage in window 9:89928316-89928317
2012-10-07 18:16:47,688 - DEBUG - Taking top 8 variants by coverage in window 9:89942063-89942064
2012-10-07 18:16:48,535 - DEBUG - Taking top 8 variants by coverage in window 9:89950051-89950052
2012-10-07 18:16:48,671 - DEBUG - Taking top 8 variants by coverage in window 9:89951253-89951254
2012-10-07 18:16:49,082 - DEBUG - Taking top 8 variants by coverage in window 9:89957144-89957145
2012-10-07 18:16:49,096 - DEBUG - Taking top 8 variants by coverage in window 9:89957145-89957146
2012-10-07 18:16:49,340 - DEBUG - Taking top 8 variants by coverage in window 9:89959597-89959598
2012-10-07 18:16:49,376 - DEBUG - Taking top 8 variants by coverage in window 9:89959733-89959734
2012-10-07 18:16:49,954 - DEBUG - Taking top 8 variants by coverage in window 9:89966385-89966386
2012-10-07 18:16:50,055 - DEBUG - Taking top 8 variants by coverage in window 9:89967288-89967289
2012-10-07 18:16:50,081 - DEBUG - Taking top 8 variants by coverage in window 9:89967303-89967304
2012-10-07 18:16:51,146 - DEBUG - Taking top 8 variants by coverage in window 9:89980752-89980753
2012-10-07 18:16:51,153 - DEBUG - Taking top 8 variants by coverage in window 9:89980754-89980755
2012-10-07 18:16:51,285 - DEBUG - Taking top 8 variants by coverage in window 9:89983140-89983141
2012-10-07 18:16:51,412 - DEBUG - Taking top 8 variants by coverage in window 9:89986400-89986401
2012-10-07 18:16:51,526 - DEBUG - Taking top 8 variants by coverage in window 9:89989553-89989554
2012-10-07 18:16:51,538 - DEBUG - Taking top 8 variants by coverage in window 9:89989615-89989616
2012-10-07 18:16:52,988 - DEBUG - Read 80054 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 18:16:53,206 - DEBUG - Read 87506 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 18:16:53,438 - DEBUG - Read 101691 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 18:16:53,698 - DEBUG - Read 102650 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 18:16:53,948 - DEBUG - Read 98057 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 18:16:54,171 - DEBUG - Read 92408 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 18:16:54,408 - DEBUG - Read 99089 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 18:16:54,631 - DEBUG - Read 86154 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 18:16:54,840 - DEBUG - Read 82687 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 18:16:55,058 - DEBUG - Read 86111 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 18:16:55,294 - DEBUG - Read 95694 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 18:16:55,497 - DEBUG - Read 82570 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 18:16:55,708 - DEBUG - Read 83571 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 18:16:55,989 - DEBUG - Read 94117 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 18:16:56,230 - DEBUG - Read 102010 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 18:16:56,432 - DEBUG - Read 77438 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 18:16:56,659 - DEBUG - Read 98120 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 18:16:56,893 - DEBUG - Read 94327 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 18:16:57,084 - DEBUG - Read 77416 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 18:16:57,298 - DEBUG - Read 82374 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 18:16:57,388 - DEBUG - Detected 18478 variants in 80054 reads
2012-10-07 18:16:57,519 - DEBUG - Detected 26760 variants in 87506 reads
2012-10-07 18:16:57,693 - DEBUG - Detected 35019 variants in 101691 reads
2012-10-07 18:16:57,896 - DEBUG - Detected 43413 variants in 102650 reads
2012-10-07 18:16:58,124 - DEBUG - Detected 48496 variants in 98057 reads
2012-10-07 18:16:58,372 - DEBUG - Detected 53683 variants in 92408 reads
2012-10-07 18:16:58,659 - DEBUG - Detected 67375 variants in 99089 reads
2012-10-07 18:16:58,988 - DEBUG - Detected 72023 variants in 86154 reads
2012-10-07 18:16:59,369 - DEBUG - Detected 77643 variants in 82687 reads
2012-10-07 18:16:59,747 - DEBUG - Detected 82623 variants in 86111 reads
2012-10-07 18:17:00,142 - DEBUG - Detected 87337 variants in 95694 reads
2012-10-07 18:17:00,554 - DEBUG - Detected 90681 variants in 82570 reads
2012-10-07 18:17:00,983 - DEBUG - Detected 94059 variants in 83571 reads
2012-10-07 18:17:01,437 - DEBUG - Detected 97764 variants in 94117 reads
2012-10-07 18:17:01,920 - DEBUG - Detected 104107 variants in 102010 reads
2012-10-07 18:17:02,456 - DEBUG - Detected 108944 variants in 77438 reads
2012-10-07 18:17:02,985 - DEBUG - Detected 112442 variants in 98120 reads
2012-10-07 18:17:03,524 - DEBUG - Detected 116202 variants in 94327 reads
2012-10-07 18:17:04,062 - DEBUG - Detected 119616 variants in 77416 reads
2012-10-07 18:17:04,610 - DEBUG - Detected 123540 variants in 82374 reads
2012-10-07 18:17:05,881 - DEBUG - Taking top 8 variants by coverage in window 9:90013717-90013718
2012-10-07 18:17:06,710 - DEBUG - Taking top 8 variants by coverage in window 9:90028091-90028092
2012-10-07 18:17:06,735 - DEBUG - Taking top 8 variants by coverage in window 9:90028162-90028163
2012-10-07 18:17:06,747 - DEBUG - Taking top 8 variants by coverage in window 9:90028177-90028178
2012-10-07 18:17:07,063 - DEBUG - Taking top 8 variants by coverage in window 9:90031741-90031742
2012-10-07 18:17:07,171 - DEBUG - Taking top 8 variants by coverage in window 9:90032702-90032706
2012-10-07 18:17:07,223 - DEBUG - Taking top 8 variants by coverage in window 9:90032735-90032738
2012-10-07 18:17:08,440 - DEBUG - Taking top 8 variants by coverage in window 9:90046432-90046435
2012-10-07 18:17:08,498 - DEBUG - Taking top 8 variants by coverage in window 9:90046666-90046667
2012-10-07 18:17:08,539 - DEBUG - Taking top 8 variants by coverage in window 9:90046710-90046711
2012-10-07 18:17:08,578 - DEBUG - Taking top 8 variants by coverage in window 9:90046723-90046725
2012-10-07 18:17:08,775 - DEBUG - Taking top 8 variants by coverage in window 9:90048392-90048393
2012-10-07 18:17:08,810 - DEBUG - Taking top 8 variants by coverage in window 9:90048427-90048428
2012-10-07 18:17:09,110 - DEBUG - Taking top 8 variants by coverage in window 9:90052096-90052098
2012-10-07 18:17:09,483 - DEBUG - Taking top 8 variants by coverage in window 9:90052611-90052612
2012-10-07 18:17:11,415 - DEBUG - Taking top 8 variants by coverage in window 9:90085442-90085443
2012-10-07 18:17:11,441 - DEBUG - Taking top 8 variants by coverage in window 9:90085496-90085497
2012-10-07 18:17:12,252 - DEBUG - Taking top 8 variants by coverage in window 9:90099229-90099234
2012-10-07 18:17:12,281 - DEBUG - Taking top 8 variants by coverage in window 9:90099261-90099262
2012-10-07 18:17:12,289 - DEBUG - Taking top 8 variants by coverage in window 9:90099269-90099270
2012-10-07 18:17:13,005 - DEBUG - Taking top 8 variants by coverage in window 9:90112180-90112189
2012-10-07 18:17:13,027 - DEBUG - Taking top 8 variants by coverage in window 9:90112196-90112197
2012-10-07 18:17:13,200 - DEBUG - Taking top 8 variants by coverage in window 9:90116635-90116637
2012-10-07 18:17:13,875 - DEBUG - Taking top 8 variants by coverage in window 9:90125525-90125528
2012-10-07 18:17:13,889 - DEBUG - Taking top 8 variants by coverage in window 9:90125529-90125530
2012-10-07 18:17:13,997 - DEBUG - Taking top 8 variants by coverage in window 9:90126795-90126796
2012-10-07 18:17:14,554 - DEBUG - Taking top 8 variants by coverage in window 9:90133869-90133870
2012-10-07 18:17:14,595 - DEBUG - Taking top 8 variants by coverage in window 9:90133883-90133884
2012-10-07 18:17:15,022 - DEBUG - Taking top 8 variants by coverage in window 9:90138474-90138475
2012-10-07 18:17:15,505 - DEBUG - Taking top 8 variants by coverage in window 9:90150824-90150832
2012-10-07 18:17:15,526 - DEBUG - Taking top 8 variants by coverage in window 9:90151149-90151150
2012-10-07 18:17:16,822 - DEBUG - Taking top 8 variants by coverage in window 9:90176650-90176654
2012-10-07 18:17:16,855 - DEBUG - Taking top 8 variants by coverage in window 9:90176992-90176993
2012-10-07 18:17:17,467 - DEBUG - Taking top 8 variants by coverage in window 9:90187262-90187263
2012-10-07 18:17:18,064 - DEBUG - Taking top 8 variants by coverage in window 9:90195414-90195415
2012-10-07 18:17:18,413 - DEBUG - Taking top 8 variants by coverage in window 9:90198776-90198777
2012-10-07 18:17:19,531 - DEBUG - Taking top 8 variants by coverage in window 9:90219675-90219676
2012-10-07 18:17:20,343 - DEBUG - Taking top 8 variants by coverage in window 9:90231097-90231098
2012-10-07 18:17:20,821 - DEBUG - Taking top 8 variants by coverage in window 9:90247305-90247306
2012-10-07 18:17:20,975 - DEBUG - Taking top 8 variants by coverage in window 9:90249726-90249727
2012-10-07 18:17:21,062 - DEBUG - Taking top 8 variants by coverage in window 9:90251331-90251332
2012-10-07 18:17:21,519 - DEBUG - Taking top 8 variants by coverage in window 9:90265927-90265928
2012-10-07 18:17:22,067 - DEBUG - Taking top 8 variants by coverage in window 9:90278302-90278313
2012-10-07 18:17:22,375 - DEBUG - Taking top 8 variants by coverage in window 9:90283539-90283540
2012-10-07 18:17:23,419 - DEBUG - Taking top 8 variants by coverage in window 9:90298929-90298930
2012-10-07 18:17:23,477 - DEBUG - Taking top 8 variants by coverage in window 9:90299460-90299461
2012-10-07 18:17:24,542 - DEBUG - Taking top 8 variants by coverage in window 9:90317769-90317770
2012-10-07 18:17:25,306 - DEBUG - Taking top 8 variants by coverage in window 9:90327414-90327415
2012-10-07 18:17:25,604 - DEBUG - Taking top 8 variants by coverage in window 9:90329762-90329763
2012-10-07 18:17:26,309 - DEBUG - Taking top 8 variants by coverage in window 9:90337338-90337339
2012-10-07 18:17:26,427 - DEBUG - Taking top 8 variants by coverage in window 9:90337410-90337411
2012-10-07 18:17:27,107 - DEBUG - Taking top 8 variants by coverage in window 9:90348002-90348003
2012-10-07 18:17:27,226 - DEBUG - Taking top 8 variants by coverage in window 9:90350274-90350275
2012-10-07 18:17:27,257 - DEBUG - Taking top 8 variants by coverage in window 9:90352200-90352201
2012-10-07 18:17:27,424 - DEBUG - Taking top 8 variants by coverage in window 9:90355857-90355858
2012-10-07 18:17:28,073 - DEBUG - Taking top 8 variants by coverage in window 9:90369670-90369671
2012-10-07 18:17:28,087 - DEBUG - Taking top 8 variants by coverage in window 9:90369677-90369678
2012-10-07 18:17:28,120 - DEBUG - Taking top 8 variants by coverage in window 9:90370199-90370200
2012-10-07 18:17:28,130 - DEBUG - Taking top 8 variants by coverage in window 9:90370209-90370210
2012-10-07 18:17:28,893 - DEBUG - Taking top 8 variants by coverage in window 9:90383065-90383066
2012-10-07 18:17:30,428 - DEBUG - Taking top 8 variants by coverage in window 9:90405783-90405788
2012-10-07 18:17:31,107 - DEBUG - Taking top 8 variants by coverage in window 9:90414516-90414517
2012-10-07 18:17:31,602 - DEBUG - Taking top 8 variants by coverage in window 9:90421073-90421074
2012-10-07 18:17:31,700 - DEBUG - Taking top 8 variants by coverage in window 9:90421100-90421101
2012-10-07 18:17:31,783 - DEBUG - Taking top 8 variants by coverage in window 9:90421173-90421174
2012-10-07 18:17:31,815 - DEBUG - Taking top 8 variants by coverage in window 9:90421175-90421178
2012-10-07 18:17:32,201 - DEBUG - Taking top 8 variants by coverage in window 9:90422537-90422538
2012-10-07 18:17:32,686 - DEBUG - Taking top 8 variants by coverage in window 9:90428025-90428033
2012-10-07 18:17:32,702 - DEBUG - Taking top 8 variants by coverage in window 9:90428047-90428048
2012-10-07 18:17:32,778 - DEBUG - Taking top 8 variants by coverage in window 9:90428156-90428157
2012-10-07 18:17:34,100 - DEBUG - Taking top 8 variants by coverage in window 9:90433717-90433718
2012-10-07 18:17:35,335 - DEBUG - Taking top 8 variants by coverage in window 9:90447021-90447022
2012-10-07 18:17:36,008 - DEBUG - Taking top 8 variants by coverage in window 9:90454599-90454600
2012-10-07 18:17:36,076 - DEBUG - Taking top 8 variants by coverage in window 9:90454762-90454763
2012-10-07 18:17:36,423 - DEBUG - Taking top 8 variants by coverage in window 9:90460038-90460039
2012-10-07 18:17:36,690 - DEBUG - Taking top 8 variants by coverage in window 9:90462026-90462027
2012-10-07 18:17:36,975 - DEBUG - Taking top 8 variants by coverage in window 9:90464215-90464234
2012-10-07 18:17:37,319 - DEBUG - Taking top 8 variants by coverage in window 9:90468336-90468337
2012-10-07 18:17:37,582 - DEBUG - Taking top 8 variants by coverage in window 9:90471635-90471636
2012-10-07 18:17:37,594 - DEBUG - Taking top 8 variants by coverage in window 9:90471648-90471649
2012-10-07 18:17:37,601 - DEBUG - Taking top 8 variants by coverage in window 9:90471649-90471650
2012-10-07 18:17:38,158 - DEBUG - Taking top 8 variants by coverage in window 9:90478106-90478107
2012-10-07 18:17:40,215 - DEBUG - Taking top 8 variants by coverage in window 9:90508827-90508828
2012-10-07 18:17:40,227 - DEBUG - Taking top 8 variants by coverage in window 9:90508834-90508835
2012-10-07 18:17:41,531 - DEBUG - Taking top 8 variants by coverage in window 9:90535299-90535305
2012-10-07 18:17:41,647 - DEBUG - Taking top 8 variants by coverage in window 9:90535309-90535311
2012-10-07 18:17:41,817 - DEBUG - Taking top 8 variants by coverage in window 9:90536566-90536567
2012-10-07 18:17:41,859 - DEBUG - Taking top 8 variants by coverage in window 9:90536618-90536619
2012-10-07 18:17:41,901 - DEBUG - Taking top 8 variants by coverage in window 9:90536665-90536666
2012-10-07 18:17:42,359 - DEBUG - Taking top 8 variants by coverage in window 9:90540025-90540029
2012-10-07 18:17:45,320 - DEBUG - Taking top 8 variants by coverage in window 9:90587530-90587546
2012-10-07 18:17:46,007 - DEBUG - Taking top 8 variants by coverage in window 9:90602151-90602152
2012-10-07 18:17:46,102 - DEBUG - Taking top 8 variants by coverage in window 9:90603980-90603990
2012-10-07 18:17:46,279 - DEBUG - Taking top 8 variants by coverage in window 9:90607589-90607595
2012-10-07 18:17:46,488 - DEBUG - Taking top 8 variants by coverage in window 9:90607779-90607790
2012-10-07 18:17:46,568 - DEBUG - Taking top 8 variants by coverage in window 9:90608541-90608542
2012-10-07 18:17:46,598 - DEBUG - Taking top 8 variants by coverage in window 9:90608563-90608564
2012-10-07 18:17:46,606 - DEBUG - Taking top 8 variants by coverage in window 9:90608566-90608573
2012-10-07 18:17:46,976 - DEBUG - Taking top 8 variants by coverage in window 9:90614746-90614750
2012-10-07 18:17:47,361 - DEBUG - Taking top 8 variants by coverage in window 9:90620887-90620888
2012-10-07 18:17:49,483 - DEBUG - Taking top 8 variants by coverage in window 9:90643746-90643750
2012-10-07 18:17:49,532 - DEBUG - Taking top 8 variants by coverage in window 9:90643766-90643771
2012-10-07 18:17:49,819 - DEBUG - Taking top 8 variants by coverage in window 9:90643772-90643777
2012-10-07 18:17:52,282 - DEBUG - Taking top 8 variants by coverage in window 9:90682346-90682347
2012-10-07 18:17:52,322 - DEBUG - Taking top 8 variants by coverage in window 9:90682907-90682908
2012-10-07 18:17:52,505 - DEBUG - Taking top 8 variants by coverage in window 9:90687798-90687799
2012-10-07 18:17:52,649 - DEBUG - Taking top 8 variants by coverage in window 9:90689926-90689928
2012-10-07 18:17:53,163 - DEBUG - Taking top 8 variants by coverage in window 9:90694088-90694107
2012-10-07 18:17:53,327 - DEBUG - Taking top 8 variants by coverage in window 9:90694293-90694300
2012-10-07 18:17:53,480 - DEBUG - Taking top 8 variants by coverage in window 9:90694323-90694324
2012-10-07 18:17:53,499 - DEBUG - Taking top 8 variants by coverage in window 9:90694331-90694337
2012-10-07 18:17:53,592 - DEBUG - Taking top 8 variants by coverage in window 9:90694473-90694474
2012-10-07 18:17:53,973 - DEBUG - Taking top 8 variants by coverage in window 9:90701738-90701739
2012-10-07 18:17:54,407 - DEBUG - Taking top 8 variants by coverage in window 9:90710744-90710748
2012-10-07 18:17:55,262 - DEBUG - Taking top 8 variants by coverage in window 9:90727389-90727390
2012-10-07 18:17:55,323 - DEBUG - Taking top 8 variants by coverage in window 9:90728409-90728410
2012-10-07 18:17:55,364 - DEBUG - Taking top 8 variants by coverage in window 9:90730047-90730048
2012-10-07 18:17:56,144 - DEBUG - Taking top 8 variants by coverage in window 9:90748492-90748493
2012-10-07 18:17:56,813 - DEBUG - Taking top 8 variants by coverage in window 9:90778513-90778514
2012-10-07 18:17:57,747 - DEBUG - Taking top 8 variants by coverage in window 9:90799378-90799379
2012-10-07 18:17:57,874 - DEBUG - Taking top 8 variants by coverage in window 9:90801043-90801044
2012-10-07 18:17:58,406 - DEBUG - Taking top 8 variants by coverage in window 9:90808008-90808020
2012-10-07 18:17:58,425 - DEBUG - Taking top 8 variants by coverage in window 9:90808035-90808036
2012-10-07 18:17:59,426 - DEBUG - Taking top 8 variants by coverage in window 9:90837540-90837543
2012-10-07 18:17:59,950 - DEBUG - Taking top 8 variants by coverage in window 9:90843115-90843116
2012-10-07 18:18:00,573 - DEBUG - Taking top 8 variants by coverage in window 9:90855513-90855514
2012-10-07 18:18:00,708 - DEBUG - Taking top 8 variants by coverage in window 9:90859445-90859446
2012-10-07 18:18:00,928 - DEBUG - Taking top 8 variants by coverage in window 9:90864043-90864045
2012-10-07 18:18:01,261 - DEBUG - Taking top 8 variants by coverage in window 9:90871296-90871297
2012-10-07 18:18:02,003 - DEBUG - Taking top 8 variants by coverage in window 9:90881334-90881335
2012-10-07 18:18:02,230 - DEBUG - Taking top 8 variants by coverage in window 9:90883646-90883647
2012-10-07 18:18:02,981 - DEBUG - Taking top 8 variants by coverage in window 9:90896613-90896614
2012-10-07 18:18:03,706 - DEBUG - Taking top 8 variants by coverage in window 9:90904775-90904776
2012-10-07 18:18:04,243 - DEBUG - Taking top 8 variants by coverage in window 9:90915684-90915685
2012-10-07 18:18:04,278 - DEBUG - Taking top 8 variants by coverage in window 9:90915798-90915799
2012-10-07 18:18:04,412 - DEBUG - Taking top 8 variants by coverage in window 9:90917187-90917189
2012-10-07 18:18:04,514 - DEBUG - Taking top 8 variants by coverage in window 9:90917983-90917985
2012-10-07 18:18:05,498 - DEBUG - Taking top 8 variants by coverage in window 9:90936591-90936592
2012-10-07 18:18:05,981 - DEBUG - Taking top 8 variants by coverage in window 9:90944526-90944534
2012-10-07 18:18:06,048 - DEBUG - Taking top 8 variants by coverage in window 9:90944556-90944557
2012-10-07 18:18:07,489 - DEBUG - Taking top 8 variants by coverage in window 9:90967980-90967981
2012-10-07 18:18:07,771 - DEBUG - Taking top 8 variants by coverage in window 9:90974239-90974240
2012-10-07 18:18:08,383 - DEBUG - Taking top 8 variants by coverage in window 9:90981279-90981287
2012-10-07 18:18:08,604 - DEBUG - Taking top 8 variants by coverage in window 9:90982986-90982987
2012-10-07 18:18:09,451 - DEBUG - Taking top 8 variants by coverage in window 9:90998233-90998234
2012-10-07 18:18:09,487 - DEBUG - Taking top 8 variants by coverage in window 9:90998382-90998383
2012-10-07 18:18:09,503 - DEBUG - Taking top 8 variants by coverage in window 9:90998387-90998388
2012-10-07 18:18:10,547 - DEBUG - Read 78486 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 18:18:10,747 - DEBUG - Read 82445 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 18:18:10,966 - DEBUG - Read 98002 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 18:18:11,200 - DEBUG - Read 94250 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 18:18:11,432 - DEBUG - Read 93217 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 18:18:11,643 - DEBUG - Read 89672 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 18:18:11,865 - DEBUG - Read 96089 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 18:18:12,066 - DEBUG - Read 80013 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 18:18:12,257 - DEBUG - Read 77456 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 18:18:12,466 - DEBUG - Read 84292 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 18:18:12,685 - DEBUG - Read 91094 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 18:18:12,871 - DEBUG - Read 76841 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 18:18:13,065 - DEBUG - Read 78367 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 18:18:13,267 - DEBUG - Read 87948 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 18:18:13,489 - DEBUG - Read 95258 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 18:18:13,685 - DEBUG - Read 73204 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 18:18:13,894 - DEBUG - Read 92459 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 18:18:14,114 - DEBUG - Read 91714 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 18:18:14,286 - DEBUG - Read 70692 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 18:18:14,488 - DEBUG - Read 78536 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 18:18:14,573 - DEBUG - Detected 15192 variants in 78486 reads
2012-10-07 18:18:14,692 - DEBUG - Detected 25023 variants in 82445 reads
2012-10-07 18:18:14,858 - DEBUG - Detected 31625 variants in 98002 reads
2012-10-07 18:18:15,047 - DEBUG - Detected 37722 variants in 94250 reads
2012-10-07 18:18:15,256 - DEBUG - Detected 43881 variants in 93217 reads
2012-10-07 18:18:15,491 - DEBUG - Detected 48440 variants in 89672 reads
2012-10-07 18:18:15,766 - DEBUG - Detected 58833 variants in 96089 reads
2012-10-07 18:18:16,076 - DEBUG - Detected 62959 variants in 80013 reads
2012-10-07 18:18:16,395 - DEBUG - Detected 67246 variants in 77456 reads
2012-10-07 18:18:16,772 - DEBUG - Detected 71132 variants in 84292 reads
2012-10-07 18:18:17,143 - DEBUG - Detected 77610 variants in 91094 reads
2012-10-07 18:18:17,526 - DEBUG - Detected 80386 variants in 76841 reads
2012-10-07 18:18:17,924 - DEBUG - Detected 83604 variants in 78367 reads
2012-10-07 18:18:18,355 - DEBUG - Detected 87386 variants in 87948 reads
2012-10-07 18:18:18,805 - DEBUG - Detected 93312 variants in 95258 reads
2012-10-07 18:18:19,266 - DEBUG - Detected 96334 variants in 73204 reads
2012-10-07 18:18:19,764 - DEBUG - Detected 99206 variants in 92459 reads
2012-10-07 18:18:20,313 - DEBUG - Detected 102492 variants in 91714 reads
2012-10-07 18:18:20,804 - DEBUG - Detected 105602 variants in 70692 reads
2012-10-07 18:18:21,298 - DEBUG - Detected 110126 variants in 78536 reads
2012-10-07 18:18:22,041 - DEBUG - Taking top 8 variants by coverage in window 9:91000735-91000740
2012-10-07 18:18:22,482 - DEBUG - Taking top 8 variants by coverage in window 9:91005368-91005370
2012-10-07 18:18:24,771 - DEBUG - Taking top 8 variants by coverage in window 9:91041587-91041588
2012-10-07 18:18:25,090 - DEBUG - Taking top 8 variants by coverage in window 9:91045377-91045379
2012-10-07 18:18:25,216 - DEBUG - Taking top 8 variants by coverage in window 9:91047141-91047142
2012-10-07 18:18:25,860 - DEBUG - Taking top 8 variants by coverage in window 9:91055318-91055319
2012-10-07 18:18:25,922 - DEBUG - Taking top 8 variants by coverage in window 9:91055514-91055515
2012-10-07 18:18:26,182 - DEBUG - Taking top 8 variants by coverage in window 9:91057322-91057329
2012-10-07 18:18:26,323 - DEBUG - Taking top 8 variants by coverage in window 9:91058614-91058616
2012-10-07 18:18:26,363 - DEBUG - Taking top 8 variants by coverage in window 9:91058623-91058624
2012-10-07 18:18:27,749 - DEBUG - Taking top 8 variants by coverage in window 9:91081417-91081418
2012-10-07 18:18:27,851 - DEBUG - Taking top 8 variants by coverage in window 9:91083619-91083620
2012-10-07 18:18:27,988 - DEBUG - Taking top 8 variants by coverage in window 9:91086283-91086286
2012-10-07 18:18:28,400 - DEBUG - Taking top 8 variants by coverage in window 9:91092770-91092771
2012-10-07 18:18:28,810 - DEBUG - Taking top 8 variants by coverage in window 9:91099308-91099310
2012-10-07 18:18:29,014 - DEBUG - Taking top 8 variants by coverage in window 9:91103500-91103501
2012-10-07 18:18:29,802 - DEBUG - Taking top 8 variants by coverage in window 9:91121546-91121556
2012-10-07 18:18:30,277 - DEBUG - Taking top 8 variants by coverage in window 9:91132266-91132267
2012-10-07 18:18:30,307 - DEBUG - Taking top 8 variants by coverage in window 9:91138842-91138843
2012-10-07 18:18:30,625 - DEBUG - Taking top 8 variants by coverage in window 9:91144008-91144009
2012-10-07 18:18:30,662 - DEBUG - Taking top 8 variants by coverage in window 9:91144649-91144650
2012-10-07 18:18:30,815 - DEBUG - Taking top 8 variants by coverage in window 9:91148067-91148068
2012-10-07 18:18:31,182 - DEBUG - Taking top 8 variants by coverage in window 9:91154571-91154572
2012-10-07 18:18:31,270 - DEBUG - Taking top 8 variants by coverage in window 9:91163830-91163831
2012-10-07 18:18:31,487 - DEBUG - Taking top 8 variants by coverage in window 9:91165739-91165751
2012-10-07 18:18:31,876 - DEBUG - Taking top 8 variants by coverage in window 9:91173010-91173012
2012-10-07 18:18:32,029 - DEBUG - Taking top 8 variants by coverage in window 9:91176914-91176915
2012-10-07 18:18:32,298 - DEBUG - Taking top 8 variants by coverage in window 9:91180532-91180533
2012-10-07 18:18:32,394 - DEBUG - Taking top 8 variants by coverage in window 9:91181527-91181531
2012-10-07 18:18:32,590 - DEBUG - Taking top 8 variants by coverage in window 9:91182655-91182656
2012-10-07 18:18:32,657 - DEBUG - Taking top 8 variants by coverage in window 9:91183435-91183436
2012-10-07 18:18:33,973 - DEBUG - Taking top 8 variants by coverage in window 9:91201663-91201666
2012-10-07 18:18:34,166 - DEBUG - Taking top 8 variants by coverage in window 9:91202738-91202739
2012-10-07 18:18:35,335 - DEBUG - Taking top 8 variants by coverage in window 9:91220861-91220865
2012-10-07 18:18:35,969 - DEBUG - Taking top 8 variants by coverage in window 9:91229944-91229945
2012-10-07 18:18:35,977 - DEBUG - Taking top 8 variants by coverage in window 9:91229947-91229948
2012-10-07 18:18:36,503 - DEBUG - Taking top 8 variants by coverage in window 9:91240123-91240124
2012-10-07 18:18:36,732 - DEBUG - Taking top 8 variants by coverage in window 9:91244991-91244992
2012-10-07 18:18:37,608 - DEBUG - Taking top 8 variants by coverage in window 9:91279860-91279866
2012-10-07 18:18:37,831 - DEBUG - Taking top 8 variants by coverage in window 9:91285676-91285677
2012-10-07 18:18:37,926 - DEBUG - Taking top 8 variants by coverage in window 9:91288670-91288671
2012-10-07 18:18:38,345 - DEBUG - Taking top 8 variants by coverage in window 9:91298452-91298453
2012-10-07 18:18:38,485 - DEBUG - Taking top 8 variants by coverage in window 9:91302789-91302790
2012-10-07 18:18:38,669 - DEBUG - Taking top 8 variants by coverage in window 9:91306352-91306353
2012-10-07 18:18:39,534 - DEBUG - Taking top 8 variants by coverage in window 9:91320504-91320505
2012-10-07 18:18:39,713 - DEBUG - Taking top 8 variants by coverage in window 9:91323472-91323473
2012-10-07 18:18:40,594 - DEBUG - Taking top 8 variants by coverage in window 9:91337925-91337926
2012-10-07 18:18:41,780 - DEBUG - Taking top 8 variants by coverage in window 9:91362180-91362186
2012-10-07 18:18:42,302 - DEBUG - Taking top 8 variants by coverage in window 9:91369216-91369217
2012-10-07 18:18:42,307 - DEBUG - Taking top 8 variants by coverage in window 9:91369217-91369220
2012-10-07 18:18:42,771 - DEBUG - Taking top 8 variants by coverage in window 9:91373425-91373431
2012-10-07 18:18:43,179 - DEBUG - Taking top 8 variants by coverage in window 9:91373441-91373442
2012-10-07 18:18:43,331 - DEBUG - Taking top 8 variants by coverage in window 9:91374911-91374912
2012-10-07 18:18:43,355 - DEBUG - Taking top 8 variants by coverage in window 9:91374933-91374934
2012-10-07 18:18:43,607 - DEBUG - Taking top 8 variants by coverage in window 9:91378546-91378558
2012-10-07 18:18:44,020 - DEBUG - Taking top 8 variants by coverage in window 9:91386699-91386705
2012-10-07 18:18:45,490 - DEBUG - Taking top 8 variants by coverage in window 9:91402822-91402823
2012-10-07 18:18:45,526 - DEBUG - Taking top 8 variants by coverage in window 9:91402850-91402851
2012-10-07 18:18:46,350 - DEBUG - Taking top 8 variants by coverage in window 9:91426687-91426688
2012-10-07 18:18:46,656 - DEBUG - Taking top 8 variants by coverage in window 9:91430595-91430596
2012-10-07 18:18:47,428 - DEBUG - Taking top 8 variants by coverage in window 9:91456265-91456270
2012-10-07 18:18:47,520 - DEBUG - Taking top 8 variants by coverage in window 9:91458726-91458737
2012-10-07 18:18:47,790 - DEBUG - Taking top 8 variants by coverage in window 9:91463522-91463524
2012-10-07 18:18:48,749 - DEBUG - Taking top 8 variants by coverage in window 9:91487772-91487782
2012-10-07 18:18:49,301 - DEBUG - Taking top 8 variants by coverage in window 9:91499987-91499988
2012-10-07 18:18:49,518 - DEBUG - Taking top 8 variants by coverage in window 9:91506750-91506758
2012-10-07 18:18:49,872 - DEBUG - Taking top 8 variants by coverage in window 9:91513067-91513069
2012-10-07 18:18:49,970 - DEBUG - Taking top 8 variants by coverage in window 9:91521481-91521482
2012-10-07 18:18:50,180 - DEBUG - Taking top 8 variants by coverage in window 9:91522779-91522785
2012-10-07 18:18:50,739 - DEBUG - Taking top 8 variants by coverage in window 9:91546082-91546086
2012-10-07 18:18:50,949 - DEBUG - Taking top 8 variants by coverage in window 9:91550119-91550120
2012-10-07 18:18:53,294 - DEBUG - Taking top 8 variants by coverage in window 9:91604568-91604573
2012-10-07 18:18:53,386 - DEBUG - Taking top 8 variants by coverage in window 9:91605473-91605477
2012-10-07 18:18:56,318 - DEBUG - Taking top 8 variants by coverage in window 9:91669021-91669022
2012-10-07 18:18:56,331 - DEBUG - Taking top 8 variants by coverage in window 9:91669065-91669066
2012-10-07 18:18:56,428 - DEBUG - Taking top 8 variants by coverage in window 9:91670336-91670344
2012-10-07 18:18:57,663 - DEBUG - Taking top 8 variants by coverage in window 9:91681089-91681099
2012-10-07 18:18:57,701 - DEBUG - Taking top 8 variants by coverage in window 9:91681288-91681289
2012-10-07 18:18:58,319 - DEBUG - Taking top 8 variants by coverage in window 9:91695452-91695453
2012-10-07 18:18:58,615 - DEBUG - Taking top 8 variants by coverage in window 9:91702095-91702096
2012-10-07 18:18:58,859 - DEBUG - Taking top 8 variants by coverage in window 9:91708122-91708128
2012-10-07 18:18:59,627 - DEBUG - Taking top 8 variants by coverage in window 9:91732474-91732475
2012-10-07 18:19:00,188 - DEBUG - Taking top 8 variants by coverage in window 9:91742254-91742263
2012-10-07 18:19:00,687 - DEBUG - Taking top 8 variants by coverage in window 9:91746866-91746874
2012-10-07 18:19:00,964 - DEBUG - Taking top 8 variants by coverage in window 9:91751785-91751786
2012-10-07 18:19:00,977 - DEBUG - Taking top 8 variants by coverage in window 9:91751803-91751804
2012-10-07 18:19:00,988 - DEBUG - Taking top 8 variants by coverage in window 9:91751811-91751812
2012-10-07 18:19:01,247 - DEBUG - Taking top 8 variants by coverage in window 9:91758603-91758604
2012-10-07 18:19:02,976 - DEBUG - Taking top 8 variants by coverage in window 9:91798415-91798416
2012-10-07 18:19:03,847 - DEBUG - Taking top 8 variants by coverage in window 9:91814659-91814669
2012-10-07 18:19:04,899 - DEBUG - Taking top 8 variants by coverage in window 9:91832753-91832754
2012-10-07 18:19:04,926 - DEBUG - Taking top 8 variants by coverage in window 9:91832901-91832902
2012-10-07 18:19:05,316 - DEBUG - Taking top 8 variants by coverage in window 9:91839579-91839580
2012-10-07 18:19:05,324 - DEBUG - Taking top 8 variants by coverage in window 9:91839582-91839583
2012-10-07 18:19:05,427 - DEBUG - Taking top 8 variants by coverage in window 9:91840665-91840666
2012-10-07 18:19:05,940 - DEBUG - Taking top 8 variants by coverage in window 9:91853327-91853343
2012-10-07 18:19:07,537 - DEBUG - Taking top 8 variants by coverage in window 9:91884699-91884713
2012-10-07 18:19:08,276 - DEBUG - Taking top 8 variants by coverage in window 9:91890875-91890876
2012-10-07 18:19:08,629 - DEBUG - Taking top 8 variants by coverage in window 9:91896333-91896335
2012-10-07 18:19:08,859 - DEBUG - Taking top 8 variants by coverage in window 9:91897394-91897395
2012-10-07 18:19:10,003 - DEBUG - Taking top 8 variants by coverage in window 9:91917149-91917150
2012-10-07 18:19:12,707 - DEBUG - Taking top 8 variants by coverage in window 9:91980553-91980559
2012-10-07 18:19:14,107 - DEBUG - Read 83193 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 18:19:14,322 - DEBUG - Read 90210 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 18:19:14,558 - DEBUG - Read 107099 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 18:19:14,815 - DEBUG - Read 104155 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 18:19:15,065 - DEBUG - Read 101018 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 18:19:15,289 - DEBUG - Read 95587 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 18:19:15,526 - DEBUG - Read 102393 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 18:19:15,748 - DEBUG - Read 88755 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 18:19:15,957 - DEBUG - Read 85625 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 18:19:16,177 - DEBUG - Read 89067 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 18:19:16,409 - DEBUG - Read 98236 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 18:19:16,609 - DEBUG - Read 85237 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 18:19:16,819 - DEBUG - Read 86118 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 18:19:17,037 - DEBUG - Read 96769 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 18:19:17,278 - DEBUG - Read 105142 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 18:19:17,476 - DEBUG - Read 78658 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 18:19:17,702 - DEBUG - Read 101190 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 18:19:17,935 - DEBUG - Read 97441 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 18:19:18,124 - DEBUG - Read 79164 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 18:19:18,335 - DEBUG - Read 84237 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 18:19:18,430 - DEBUG - Detected 22212 variants in 83193 reads
2012-10-07 18:19:18,582 - DEBUG - Detected 33711 variants in 90210 reads
2012-10-07 18:19:18,792 - DEBUG - Detected 42742 variants in 107099 reads
2012-10-07 18:19:19,033 - DEBUG - Detected 49177 variants in 104155 reads
2012-10-07 18:19:19,318 - DEBUG - Detected 54278 variants in 101018 reads
2012-10-07 18:19:19,606 - DEBUG - Detected 62861 variants in 95587 reads
2012-10-07 18:19:19,941 - DEBUG - Detected 75050 variants in 102393 reads
2012-10-07 18:19:20,313 - DEBUG - Detected 80469 variants in 88755 reads
2012-10-07 18:19:20,705 - DEBUG - Detected 85277 variants in 85625 reads
2012-10-07 18:19:21,124 - DEBUG - Detected 90852 variants in 89067 reads
2012-10-07 18:19:21,599 - DEBUG - Detected 95578 variants in 98236 reads
2012-10-07 18:19:22,056 - DEBUG - Detected 98830 variants in 85237 reads
2012-10-07 18:19:22,530 - DEBUG - Detected 102855 variants in 86118 reads
2012-10-07 18:19:23,033 - DEBUG - Detected 106901 variants in 96769 reads
2012-10-07 18:19:23,566 - DEBUG - Detected 113667 variants in 105142 reads
2012-10-07 18:19:24,098 - DEBUG - Detected 116955 variants in 78658 reads
2012-10-07 18:19:24,717 - DEBUG - Detected 120290 variants in 101190 reads
2012-10-07 18:19:25,293 - DEBUG - Detected 125061 variants in 97441 reads
2012-10-07 18:19:25,875 - DEBUG - Detected 128102 variants in 79164 reads
2012-10-07 18:19:26,473 - DEBUG - Detected 132803 variants in 84237 reads
2012-10-07 18:19:27,574 - DEBUG - Taking top 8 variants by coverage in window 9:92004213-92004214
2012-10-07 18:19:27,585 - DEBUG - Taking top 8 variants by coverage in window 9:92004229-92004230
2012-10-07 18:19:27,667 - DEBUG - Taking top 8 variants by coverage in window 9:92006902-92006903
2012-10-07 18:19:27,682 - DEBUG - Taking top 8 variants by coverage in window 9:92008047-92008048
2012-10-07 18:19:28,517 - DEBUG - Taking top 8 variants by coverage in window 9:92024601-92024603
2012-10-07 18:19:28,973 - DEBUG - Taking top 8 variants by coverage in window 9:92033124-92033125
2012-10-07 18:19:28,990 - DEBUG - Taking top 8 variants by coverage in window 9:92033139-92033153
2012-10-07 18:19:29,068 - DEBUG - Taking top 8 variants by coverage in window 9:92035306-92035309
2012-10-07 18:19:30,109 - DEBUG - Taking top 8 variants by coverage in window 9:92048326-92048334
2012-10-07 18:19:30,526 - DEBUG - Taking top 8 variants by coverage in window 9:92053344-92053352
2012-10-07 18:19:31,508 - DEBUG - Taking top 8 variants by coverage in window 9:92064749-92064753
2012-10-07 18:19:31,555 - DEBUG - Taking top 8 variants by coverage in window 9:92064783-92064784
2012-10-07 18:19:32,551 - DEBUG - Taking top 8 variants by coverage in window 9:92078035-92078036
2012-10-07 18:19:32,649 - DEBUG - Taking top 8 variants by coverage in window 9:92078555-92078556
2012-10-07 18:19:33,298 - DEBUG - Taking top 8 variants by coverage in window 9:92088238-92088239
2012-10-07 18:19:33,448 - DEBUG - Taking top 8 variants by coverage in window 9:92090519-92090523
2012-10-07 18:19:34,146 - DEBUG - Taking top 8 variants by coverage in window 9:92100870-92100871
2012-10-07 18:19:34,586 - DEBUG - Taking top 8 variants by coverage in window 9:92107761-92107762
2012-10-07 18:19:35,134 - DEBUG - Taking top 8 variants by coverage in window 9:92115976-92115977
2012-10-07 18:19:35,722 - DEBUG - Taking top 8 variants by coverage in window 9:92121044-92121045
2012-10-07 18:19:35,769 - DEBUG - Taking top 8 variants by coverage in window 9:92121088-92121089
2012-10-07 18:19:36,357 - DEBUG - Taking top 8 variants by coverage in window 9:92126458-92126463
2012-10-07 18:19:36,559 - DEBUG - Taking top 8 variants by coverage in window 9:92129380-92129381
2012-10-07 18:19:36,585 - DEBUG - Taking top 8 variants by coverage in window 9:92129429-92129430
2012-10-07 18:19:36,750 - DEBUG - Taking top 8 variants by coverage in window 9:92130456-92130464
2012-10-07 18:19:37,084 - DEBUG - Taking top 8 variants by coverage in window 9:92133627-92133630
2012-10-07 18:19:37,121 - DEBUG - Taking top 8 variants by coverage in window 9:92133648-92133649
2012-10-07 18:19:37,426 - DEBUG - Taking top 8 variants by coverage in window 9:92137676-92137677
2012-10-07 18:19:37,826 - DEBUG - Taking top 8 variants by coverage in window 9:92143484-92143485
2012-10-07 18:19:38,306 - DEBUG - Taking top 8 variants by coverage in window 9:92151074-92151076
2012-10-07 18:19:38,325 - DEBUG - Taking top 8 variants by coverage in window 9:92151150-92151151
2012-10-07 18:19:38,662 - DEBUG - Taking top 8 variants by coverage in window 9:92156656-92156657
2012-10-07 18:19:39,885 - DEBUG - Taking top 8 variants by coverage in window 9:92174387-92174393
2012-10-07 18:19:39,915 - DEBUG - Taking top 8 variants by coverage in window 9:92174413-92174414
2012-10-07 18:19:40,202 - DEBUG - Taking top 8 variants by coverage in window 9:92179757-92179761
2012-10-07 18:19:40,264 - DEBUG - Taking top 8 variants by coverage in window 9:92179829-92179830
2012-10-07 18:19:40,520 - DEBUG - Taking top 8 variants by coverage in window 9:92184845-92184848
2012-10-07 18:19:40,717 - DEBUG - Taking top 8 variants by coverage in window 9:92186646-92186647
2012-10-07 18:19:43,517 - DEBUG - Taking top 8 variants by coverage in window 9:92226015-92226016
2012-10-07 18:19:43,961 - DEBUG - Taking top 8 variants by coverage in window 9:92227879-92227888
2012-10-07 18:19:44,244 - DEBUG - Taking top 8 variants by coverage in window 9:92227906-92227922
2012-10-07 18:19:46,866 - DEBUG - Taking top 8 variants by coverage in window 9:92228464-92228465
2012-10-07 18:19:46,971 - DEBUG - Taking top 8 variants by coverage in window 9:92229058-92229059
2012-10-07 18:19:47,502 - DEBUG - Taking top 8 variants by coverage in window 9:92232720-92232721
2012-10-07 18:19:47,573 - DEBUG - Taking top 8 variants by coverage in window 9:92234027-92234028
2012-10-07 18:19:48,004 - DEBUG - Taking top 8 variants by coverage in window 9:92242059-92242065
2012-10-07 18:19:49,822 - DEBUG - Taking top 8 variants by coverage in window 9:92269794-92269795
2012-10-07 18:19:50,595 - DEBUG - Taking top 8 variants by coverage in window 9:92279929-92279934
2012-10-07 18:19:51,381 - DEBUG - Taking top 8 variants by coverage in window 9:92285869-92285870
2012-10-07 18:19:51,466 - DEBUG - Taking top 8 variants by coverage in window 9:92287219-92287220
2012-10-07 18:19:52,519 - DEBUG - Taking top 8 variants by coverage in window 9:92297173-92297174
2012-10-07 18:19:52,567 - DEBUG - Taking top 8 variants by coverage in window 9:92297357-92297358
2012-10-07 18:19:52,584 - DEBUG - Taking top 8 variants by coverage in window 9:92297360-92297361
2012-10-07 18:19:52,690 - DEBUG - Taking top 8 variants by coverage in window 9:92298384-92298385
2012-10-07 18:19:52,965 - DEBUG - Taking top 8 variants by coverage in window 9:92300860-92300861
2012-10-07 18:19:53,228 - DEBUG - Taking top 8 variants by coverage in window 9:92306610-92306611
2012-10-07 18:19:53,255 - DEBUG - Taking top 8 variants by coverage in window 9:92306626-92306627
2012-10-07 18:19:53,368 - DEBUG - Taking top 8 variants by coverage in window 9:92307536-92307537
2012-10-07 18:19:54,221 - DEBUG - Taking top 8 variants by coverage in window 9:92317294-92317295
2012-10-07 18:19:55,973 - DEBUG - Taking top 8 variants by coverage in window 9:92334688-92334689
2012-10-07 18:19:56,470 - DEBUG - Taking top 8 variants by coverage in window 9:92341227-92341229
2012-10-07 18:19:56,492 - DEBUG - Taking top 8 variants by coverage in window 9:92348290-92348291
2012-10-07 18:19:57,146 - DEBUG - Taking top 8 variants by coverage in window 9:92354916-92354919
2012-10-07 18:19:57,533 - DEBUG - Taking top 8 variants by coverage in window 9:92359009-92359010
2012-10-07 18:19:57,806 - DEBUG - Taking top 8 variants by coverage in window 9:92361320-92361322
2012-10-07 18:19:57,993 - DEBUG - Taking top 8 variants by coverage in window 9:92361589-92361596
2012-10-07 18:19:59,011 - DEBUG - Taking top 8 variants by coverage in window 9:92372409-92372410
2012-10-07 18:19:59,791 - DEBUG - Taking top 8 variants by coverage in window 9:92381913-92381914
2012-10-07 18:19:59,977 - DEBUG - Taking top 8 variants by coverage in window 9:92383326-92383336
2012-10-07 18:20:00,129 - DEBUG - Taking top 8 variants by coverage in window 9:92386040-92386041
2012-10-07 18:20:00,139 - DEBUG - Taking top 8 variants by coverage in window 9:92386044-92386045
2012-10-07 18:20:00,265 - DEBUG - Taking top 8 variants by coverage in window 9:92388275-92388287
2012-10-07 18:20:00,391 - DEBUG - Taking top 8 variants by coverage in window 9:92389326-92389327
2012-10-07 18:20:00,458 - DEBUG - Taking top 8 variants by coverage in window 9:92389948-92389949
2012-10-07 18:20:00,891 - DEBUG - Taking top 8 variants by coverage in window 9:92396151-92396152
2012-10-07 18:20:00,987 - DEBUG - Taking top 8 variants by coverage in window 9:92397114-92397115
2012-10-07 18:20:01,329 - DEBUG - Taking top 8 variants by coverage in window 9:92400828-92400829
2012-10-07 18:20:01,350 - DEBUG - Taking top 8 variants by coverage in window 9:92400830-92400831
2012-10-07 18:20:01,419 - DEBUG - Taking top 8 variants by coverage in window 9:92400977-92400978
2012-10-07 18:20:01,580 - DEBUG - Taking top 8 variants by coverage in window 9:92406497-92406498
2012-10-07 18:20:01,864 - DEBUG - Taking top 8 variants by coverage in window 9:92409770-92409771
2012-10-07 18:20:03,625 - DEBUG - Taking top 8 variants by coverage in window 9:92434218-92434219
2012-10-07 18:20:03,746 - DEBUG - Taking top 8 variants by coverage in window 9:92434881-92434882
2012-10-07 18:20:03,971 - DEBUG - Taking top 8 variants by coverage in window 9:92437601-92437602
2012-10-07 18:20:04,017 - DEBUG - Taking top 8 variants by coverage in window 9:92437684-92437685
2012-10-07 18:20:04,315 - DEBUG - Taking top 8 variants by coverage in window 9:92442375-92442377
2012-10-07 18:20:04,340 - DEBUG - Taking top 8 variants by coverage in window 9:92442574-92442575
2012-10-07 18:20:04,801 - DEBUG - Taking top 8 variants by coverage in window 9:92448488-92448492
2012-10-07 18:20:04,814 - DEBUG - Taking top 8 variants by coverage in window 9:92448498-92448514
2012-10-07 18:20:04,839 - DEBUG - Taking top 8 variants by coverage in window 9:92448526-92448527
2012-10-07 18:20:04,873 - DEBUG - Taking top 8 variants by coverage in window 9:92448574-92448588
2012-10-07 18:20:05,093 - DEBUG - Taking top 8 variants by coverage in window 9:92448897-92448898
2012-10-07 18:20:05,357 - DEBUG - Taking top 8 variants by coverage in window 9:92452540-92452541
2012-10-07 18:20:06,383 - DEBUG - Taking top 8 variants by coverage in window 9:92466775-92466776
2012-10-07 18:20:06,839 - DEBUG - Taking top 8 variants by coverage in window 9:92471954-92471957
2012-10-07 18:20:07,124 - DEBUG - Taking top 8 variants by coverage in window 9:92473700-92473701
2012-10-07 18:20:07,139 - DEBUG - Taking top 8 variants by coverage in window 9:92473709-92473710
2012-10-07 18:20:07,437 - DEBUG - Taking top 8 variants by coverage in window 9:92476632-92476634
2012-10-07 18:20:07,487 - DEBUG - Taking top 8 variants by coverage in window 9:92477754-92477755
2012-10-07 18:20:07,739 - DEBUG - Taking top 8 variants by coverage in window 9:92479989-92479993
2012-10-07 18:20:08,119 - DEBUG - Taking top 8 variants by coverage in window 9:92480733-92480734
2012-10-07 18:20:08,138 - DEBUG - Taking top 8 variants by coverage in window 9:92480734-92480735
2012-10-07 18:20:09,429 - DEBUG - Taking top 8 variants by coverage in window 9:92495249-92495251
2012-10-07 18:20:09,750 - DEBUG - Taking top 8 variants by coverage in window 9:92500630-92500633
2012-10-07 18:20:10,239 - DEBUG - Taking top 8 variants by coverage in window 9:92500651-92500653
2012-10-07 18:20:10,310 - DEBUG - Taking top 8 variants by coverage in window 9:92500671-92500672
2012-10-07 18:20:10,361 - DEBUG - Taking top 8 variants by coverage in window 9:92500681-92500684
2012-10-07 18:20:10,905 - DEBUG - Taking top 8 variants by coverage in window 9:92507251-92507252
2012-10-07 18:20:10,987 - DEBUG - Taking top 8 variants by coverage in window 9:92507500-92507507
2012-10-07 18:20:11,933 - DEBUG - Taking top 8 variants by coverage in window 9:92517277-92517278
2012-10-07 18:20:12,169 - DEBUG - Taking top 8 variants by coverage in window 9:92519731-92519733
2012-10-07 18:20:12,401 - DEBUG - Taking top 8 variants by coverage in window 9:92529351-92529352
2012-10-07 18:20:12,810 - DEBUG - Taking top 8 variants by coverage in window 9:92535292-92535293
2012-10-07 18:20:12,930 - DEBUG - Taking top 8 variants by coverage in window 9:92535825-92535826
2012-10-07 18:20:13,045 - DEBUG - Taking top 8 variants by coverage in window 9:92536265-92536266
2012-10-07 18:20:13,098 - DEBUG - Taking top 8 variants by coverage in window 9:92537442-92537446
2012-10-07 18:20:13,471 - DEBUG - Taking top 8 variants by coverage in window 9:92549321-92549334
2012-10-07 18:20:13,482 - DEBUG - Taking top 8 variants by coverage in window 9:92549341-92549342
2012-10-07 18:20:15,622 - DEBUG - Taking top 8 variants by coverage in window 9:92573135-92573151
2012-10-07 18:20:15,970 - DEBUG - Taking top 8 variants by coverage in window 9:92577286-92577287
2012-10-07 18:20:16,383 - DEBUG - Taking top 8 variants by coverage in window 9:92579858-92579859
2012-10-07 18:20:16,750 - DEBUG - Taking top 8 variants by coverage in window 9:92584865-92584866
2012-10-07 18:20:16,764 - DEBUG - Taking top 8 variants by coverage in window 9:92584866-92584867
2012-10-07 18:20:17,046 - DEBUG - Taking top 8 variants by coverage in window 9:92587046-92587047
2012-10-07 18:20:17,520 - DEBUG - Taking top 8 variants by coverage in window 9:92591377-92591389
2012-10-07 18:20:18,757 - DEBUG - Taking top 8 variants by coverage in window 9:92603612-92603615
2012-10-07 18:20:19,139 - DEBUG - Taking top 8 variants by coverage in window 9:92608342-92608343
2012-10-07 18:20:19,214 - DEBUG - Taking top 8 variants by coverage in window 9:92610019-92610020
2012-10-07 18:20:19,875 - DEBUG - Taking top 8 variants by coverage in window 9:92615534-92615535
2012-10-07 18:20:20,367 - DEBUG - Taking top 8 variants by coverage in window 9:92622196-92622198
2012-10-07 18:20:21,318 - DEBUG - Taking top 8 variants by coverage in window 9:92636935-92636936
2012-10-07 18:20:21,558 - DEBUG - Taking top 8 variants by coverage in window 9:92640398-92640399
2012-10-07 18:20:21,863 - DEBUG - Taking top 8 variants by coverage in window 9:92643438-92643442
2012-10-07 18:20:21,895 - DEBUG - Taking top 8 variants by coverage in window 9:92643529-92643530
2012-10-07 18:20:22,254 - DEBUG - Taking top 8 variants by coverage in window 9:92647466-92647467
2012-10-07 18:20:22,432 - DEBUG - Taking top 8 variants by coverage in window 9:92648541-92648544
2012-10-07 18:20:22,833 - DEBUG - Taking top 8 variants by coverage in window 9:92651438-92651439
2012-10-07 18:20:22,974 - DEBUG - Taking top 8 variants by coverage in window 9:92652119-92652120
2012-10-07 18:20:25,964 - DEBUG - Taking top 8 variants by coverage in window 9:92682243-92682244
2012-10-07 18:20:26,495 - DEBUG - Taking top 8 variants by coverage in window 9:92688997-92688998
2012-10-07 18:20:27,622 - DEBUG - Taking top 8 variants by coverage in window 9:92703201-92703202
2012-10-07 18:20:27,930 - DEBUG - Taking top 8 variants by coverage in window 9:92706203-92706204
2012-10-07 18:20:28,599 - DEBUG - Taking top 8 variants by coverage in window 9:92713529-92713530
2012-10-07 18:20:28,909 - DEBUG - Taking top 8 variants by coverage in window 9:92717381-92717382
2012-10-07 18:20:28,961 - DEBUG - Taking top 8 variants by coverage in window 9:92720661-92720662
2012-10-07 18:20:30,667 - DEBUG - Taking top 8 variants by coverage in window 9:92743067-92743083
2012-10-07 18:20:30,801 - DEBUG - Taking top 8 variants by coverage in window 9:92744035-92744036
2012-10-07 18:20:31,493 - DEBUG - Taking top 8 variants by coverage in window 9:92753285-92753286
2012-10-07 18:20:32,908 - DEBUG - Taking top 8 variants by coverage in window 9:92775470-92775471
2012-10-07 18:20:33,088 - DEBUG - Taking top 8 variants by coverage in window 9:92777237-92777238
2012-10-07 18:20:33,692 - DEBUG - Taking top 8 variants by coverage in window 9:92782784-92782785
2012-10-07 18:20:34,929 - DEBUG - Taking top 8 variants by coverage in window 9:92799331-92799336
2012-10-07 18:20:35,336 - DEBUG - Taking top 8 variants by coverage in window 9:92806428-92806429
2012-10-07 18:20:35,348 - DEBUG - Taking top 8 variants by coverage in window 9:92806476-92806477
2012-10-07 18:20:35,828 - DEBUG - Taking top 8 variants by coverage in window 9:92812340-92812354
2012-10-07 18:20:36,141 - DEBUG - Taking top 8 variants by coverage in window 9:92814674-92814676
2012-10-07 18:20:37,694 - DEBUG - Taking top 8 variants by coverage in window 9:92837248-92837249
2012-10-07 18:20:38,122 - DEBUG - Taking top 8 variants by coverage in window 9:92845905-92845906
2012-10-07 18:20:38,810 - DEBUG - Taking top 8 variants by coverage in window 9:92860553-92860560
2012-10-07 18:20:39,507 - DEBUG - Taking top 8 variants by coverage in window 9:92871059-92871060
2012-10-07 18:20:39,551 - DEBUG - Taking top 8 variants by coverage in window 9:92871388-92871389
2012-10-07 18:20:40,318 - DEBUG - Taking top 8 variants by coverage in window 9:92882589-92882592
2012-10-07 18:20:40,401 - DEBUG - Taking top 8 variants by coverage in window 9:92882612-92882614
2012-10-07 18:20:40,757 - DEBUG - Taking top 8 variants by coverage in window 9:92890977-92890978
2012-10-07 18:20:41,496 - DEBUG - Taking top 8 variants by coverage in window 9:92908119-92908122
2012-10-07 18:20:44,210 - DEBUG - Taking top 8 variants by coverage in window 9:92949066-92949067
2012-10-07 18:20:45,070 - DEBUG - Taking top 8 variants by coverage in window 9:92957514-92957519
2012-10-07 18:20:45,383 - DEBUG - Taking top 8 variants by coverage in window 9:92960731-92960733
2012-10-07 18:20:45,799 - DEBUG - Taking top 8 variants by coverage in window 9:92964448-92964449
2012-10-07 18:20:48,954 - DEBUG - Read 76408 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 18:20:49,159 - DEBUG - Read 82425 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 18:20:49,387 - DEBUG - Read 98530 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 18:20:49,631 - DEBUG - Read 95347 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 18:20:49,873 - DEBUG - Read 94896 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 18:20:50,089 - DEBUG - Read 88334 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 18:20:50,318 - DEBUG - Read 95722 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 18:20:50,529 - DEBUG - Read 80855 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 18:20:50,728 - DEBUG - Read 78188 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 18:20:50,942 - DEBUG - Read 84779 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 18:20:51,167 - DEBUG - Read 90981 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 18:20:51,358 - DEBUG - Read 77870 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 18:20:51,581 - DEBUG - Read 78607 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 18:20:51,789 - DEBUG - Read 88715 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 18:20:52,020 - DEBUG - Read 95805 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 18:20:52,211 - DEBUG - Read 73045 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 18:20:52,429 - DEBUG - Read 94082 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 18:20:52,653 - DEBUG - Read 91192 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 18:20:52,831 - DEBUG - Read 71255 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 18:20:53,037 - DEBUG - Read 78514 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 18:20:53,123 - DEBUG - Detected 18775 variants in 76408 reads
2012-10-07 18:20:53,251 - DEBUG - Detected 28345 variants in 82425 reads
2012-10-07 18:20:53,434 - DEBUG - Detected 40271 variants in 98530 reads
2012-10-07 18:20:53,646 - DEBUG - Detected 47136 variants in 95347 reads
2012-10-07 18:20:53,889 - DEBUG - Detected 52155 variants in 94896 reads
2012-10-07 18:20:54,147 - DEBUG - Detected 58245 variants in 88334 reads
2012-10-07 18:20:54,480 - DEBUG - Detected 69795 variants in 95722 reads
2012-10-07 18:20:54,812 - DEBUG - Detected 74336 variants in 80855 reads
2012-10-07 18:20:55,153 - DEBUG - Detected 78792 variants in 78188 reads
2012-10-07 18:20:55,519 - DEBUG - Detected 82552 variants in 84779 reads
2012-10-07 18:20:55,901 - DEBUG - Detected 87007 variants in 90981 reads
2012-10-07 18:20:56,298 - DEBUG - Detected 89767 variants in 77870 reads
2012-10-07 18:20:56,707 - DEBUG - Detected 93412 variants in 78607 reads
2012-10-07 18:20:57,138 - DEBUG - Detected 97592 variants in 88715 reads
2012-10-07 18:20:57,632 - DEBUG - Detected 103768 variants in 95805 reads
2012-10-07 18:20:58,094 - DEBUG - Detected 106717 variants in 73045 reads
2012-10-07 18:20:58,588 - DEBUG - Detected 109625 variants in 94082 reads
2012-10-07 18:20:59,089 - DEBUG - Detected 112981 variants in 91192 reads
2012-10-07 18:20:59,583 - DEBUG - Detected 116640 variants in 71255 reads
2012-10-07 18:21:00,103 - DEBUG - Detected 120068 variants in 78514 reads
2012-10-07 18:21:04,483 - DEBUG - Taking top 8 variants by coverage in window 9:93071183-93071184
2012-10-07 18:21:04,488 - DEBUG - Taking top 8 variants by coverage in window 9:93071184-93071187
2012-10-07 18:21:04,610 - DEBUG - Taking top 8 variants by coverage in window 9:93072818-93072819
2012-10-07 18:21:05,257 - DEBUG - Taking top 8 variants by coverage in window 9:93088397-93088398
2012-10-07 18:21:05,653 - DEBUG - Taking top 8 variants by coverage in window 9:93099735-93099737
2012-10-07 18:21:05,715 - DEBUG - Taking top 8 variants by coverage in window 9:93100391-93100400
2012-10-07 18:21:05,848 - DEBUG - Taking top 8 variants by coverage in window 9:93101614-93101617
2012-10-07 18:21:06,962 - DEBUG - Taking top 8 variants by coverage in window 9:93114348-93114349
2012-10-07 18:21:08,205 - DEBUG - Taking top 8 variants by coverage in window 9:93139941-93139967
2012-10-07 18:21:08,237 - DEBUG - Taking top 8 variants by coverage in window 9:93139985-93139987
2012-10-07 18:21:08,244 - DEBUG - Taking top 8 variants by coverage in window 9:93139988-93139990
2012-10-07 18:21:08,888 - DEBUG - Taking top 8 variants by coverage in window 9:93153941-93153947
2012-10-07 18:21:08,964 - DEBUG - Taking top 8 variants by coverage in window 9:93154007-93154008
2012-10-07 18:21:09,233 - DEBUG - Taking top 8 variants by coverage in window 9:93159322-93159323
2012-10-07 18:21:09,264 - DEBUG - Taking top 8 variants by coverage in window 9:93159763-93159764
2012-10-07 18:21:10,597 - DEBUG - Taking top 8 variants by coverage in window 9:93176766-93176767
2012-10-07 18:21:10,750 - DEBUG - Taking top 8 variants by coverage in window 9:93177951-93177952
2012-10-07 18:21:11,552 - DEBUG - Taking top 8 variants by coverage in window 9:93195868-93195869
2012-10-07 18:21:11,972 - DEBUG - Taking top 8 variants by coverage in window 9:93202374-93202386
2012-10-07 18:21:12,113 - DEBUG - Taking top 8 variants by coverage in window 9:93205989-93205990
2012-10-07 18:21:13,078 - DEBUG - Taking top 8 variants by coverage in window 9:93224896-93224897
2012-10-07 18:21:14,529 - DEBUG - Taking top 8 variants by coverage in window 9:93245506-93245512
2012-10-07 18:21:14,628 - DEBUG - Taking top 8 variants by coverage in window 9:93245563-93245566
2012-10-07 18:21:14,989 - DEBUG - Taking top 8 variants by coverage in window 9:93248780-93248782
2012-10-07 18:21:15,425 - DEBUG - Taking top 8 variants by coverage in window 9:93253769-93253770
2012-10-07 18:21:15,969 - DEBUG - Taking top 8 variants by coverage in window 9:93265154-93265155
2012-10-07 18:21:17,099 - DEBUG - Taking top 8 variants by coverage in window 9:93287512-93287514
2012-10-07 18:21:17,328 - DEBUG - Taking top 8 variants by coverage in window 9:93296118-93296119
2012-10-07 18:21:17,406 - DEBUG - Taking top 8 variants by coverage in window 9:93297651-93297652
2012-10-07 18:21:18,155 - DEBUG - Taking top 8 variants by coverage in window 9:93312302-93312304
2012-10-07 18:21:19,193 - DEBUG - Taking top 8 variants by coverage in window 9:93329630-93329631
2012-10-07 18:21:19,215 - DEBUG - Taking top 8 variants by coverage in window 9:93336924-93336925
2012-10-07 18:21:21,807 - DEBUG - Taking top 8 variants by coverage in window 9:93369350-93369359
2012-10-07 18:21:22,470 - DEBUG - Taking top 8 variants by coverage in window 9:93379138-93379139
2012-10-07 18:21:22,675 - DEBUG - Taking top 8 variants by coverage in window 9:93381812-93381816
2012-10-07 18:21:24,042 - DEBUG - Taking top 8 variants by coverage in window 9:93403089-93403092
2012-10-07 18:21:24,415 - DEBUG - Taking top 8 variants by coverage in window 9:93405505-93405506
2012-10-07 18:21:24,611 - DEBUG - Taking top 8 variants by coverage in window 9:93407483-93407485
2012-10-07 18:21:25,249 - DEBUG - Taking top 8 variants by coverage in window 9:93415225-93415226
2012-10-07 18:21:26,095 - DEBUG - Taking top 8 variants by coverage in window 9:93424510-93424511
2012-10-07 18:21:26,402 - DEBUG - Taking top 8 variants by coverage in window 9:93430831-93430834
2012-10-07 18:21:26,515 - DEBUG - Taking top 8 variants by coverage in window 9:93431892-93431893
2012-10-07 18:21:26,992 - DEBUG - Taking top 8 variants by coverage in window 9:93441722-93441723
2012-10-07 18:21:27,289 - DEBUG - Taking top 8 variants by coverage in window 9:93444759-93444760
2012-10-07 18:21:27,415 - DEBUG - Taking top 8 variants by coverage in window 9:93446032-93446037
2012-10-07 18:21:27,927 - DEBUG - Taking top 8 variants by coverage in window 9:93452817-93452835
2012-10-07 18:21:28,104 - DEBUG - Taking top 8 variants by coverage in window 9:93453783-93453784
2012-10-07 18:21:28,335 - DEBUG - Taking top 8 variants by coverage in window 9:93456389-93456390
2012-10-07 18:21:28,615 - DEBUG - Taking top 8 variants by coverage in window 9:93459294-93459295
2012-10-07 18:21:30,011 - DEBUG - Taking top 8 variants by coverage in window 9:93475188-93475189
2012-10-07 18:21:31,092 - DEBUG - Taking top 8 variants by coverage in window 9:93494924-93494925
2012-10-07 18:21:33,949 - DEBUG - Taking top 8 variants by coverage in window 9:93537033-93537034
2012-10-07 18:21:34,080 - DEBUG - Taking top 8 variants by coverage in window 9:93538621-93538625
2012-10-07 18:21:34,134 - DEBUG - Taking top 8 variants by coverage in window 9:93539050-93539052
2012-10-07 18:21:34,975 - DEBUG - Taking top 8 variants by coverage in window 9:93555171-93555172
2012-10-07 18:21:36,068 - DEBUG - Taking top 8 variants by coverage in window 9:93576746-93576759
2012-10-07 18:21:36,302 - DEBUG - Taking top 8 variants by coverage in window 9:93579246-93579247
2012-10-07 18:21:37,783 - DEBUG - Taking top 8 variants by coverage in window 9:93599528-93599529
2012-10-07 18:21:37,884 - DEBUG - Taking top 8 variants by coverage in window 9:93600807-93600809
2012-10-07 18:21:38,930 - DEBUG - Taking top 8 variants by coverage in window 9:93613718-93613719
2012-10-07 18:21:39,178 - DEBUG - Taking top 8 variants by coverage in window 9:93617329-93617332
2012-10-07 18:21:40,302 - DEBUG - Taking top 8 variants by coverage in window 9:93630553-93630556
2012-10-07 18:21:40,703 - DEBUG - Taking top 8 variants by coverage in window 9:93634626-93634630
2012-10-07 18:21:41,028 - DEBUG - Taking top 8 variants by coverage in window 9:93638962-93638963
2012-10-07 18:21:41,188 - DEBUG - Taking top 8 variants by coverage in window 9:93642144-93642145
2012-10-07 18:21:41,199 - DEBUG - Taking top 8 variants by coverage in window 9:93642168-93642169
2012-10-07 18:21:43,469 - DEBUG - Taking top 8 variants by coverage in window 9:93665694-93665695
2012-10-07 18:21:43,556 - DEBUG - Taking top 8 variants by coverage in window 9:93667206-93667207
2012-10-07 18:21:43,599 - DEBUG - Taking top 8 variants by coverage in window 9:93667616-93667619
2012-10-07 18:21:43,787 - DEBUG - Taking top 8 variants by coverage in window 9:93670435-93670436
2012-10-07 18:21:43,998 - DEBUG - Taking top 8 variants by coverage in window 9:93673843-93673844
2012-10-07 18:21:47,009 - DEBUG - Taking top 8 variants by coverage in window 9:93720556-93720572
2012-10-07 18:21:47,653 - DEBUG - Taking top 8 variants by coverage in window 9:93729209-93729212
2012-10-07 18:21:47,686 - DEBUG - Taking top 8 variants by coverage in window 9:93729228-93729231
2012-10-07 18:21:47,917 - DEBUG - Taking top 8 variants by coverage in window 9:93733457-93733458
2012-10-07 18:21:48,709 - DEBUG - Taking top 8 variants by coverage in window 9:93748816-93748818
2012-10-07 18:21:48,753 - DEBUG - Taking top 8 variants by coverage in window 9:93749231-93749232
2012-10-07 18:21:49,182 - DEBUG - Taking top 8 variants by coverage in window 9:93755244-93755246
2012-10-07 18:21:50,614 - DEBUG - Taking top 8 variants by coverage in window 9:93777981-93777982
2012-10-07 18:21:50,636 - DEBUG - Taking top 8 variants by coverage in window 9:93777984-93777985
2012-10-07 18:21:50,723 - DEBUG - Taking top 8 variants by coverage in window 9:93779088-93779089
2012-10-07 18:21:51,136 - DEBUG - Taking top 8 variants by coverage in window 9:93783942-93783943
2012-10-07 18:21:51,604 - DEBUG - Taking top 8 variants by coverage in window 9:93789102-93789103
2012-10-07 18:21:51,670 - DEBUG - Taking top 8 variants by coverage in window 9:93790054-93790055
2012-10-07 18:21:52,301 - DEBUG - Taking top 8 variants by coverage in window 9:93798078-93798079
2012-10-07 18:21:52,643 - DEBUG - Taking top 8 variants by coverage in window 9:93800875-93800876
2012-10-07 18:21:53,042 - DEBUG - Taking top 8 variants by coverage in window 9:93812943-93812944
2012-10-07 18:21:53,106 - DEBUG - Taking top 8 variants by coverage in window 9:93815381-93815395
2012-10-07 18:21:53,892 - DEBUG - Taking top 8 variants by coverage in window 9:93828038-93828039
2012-10-07 18:21:53,901 - DEBUG - Taking top 8 variants by coverage in window 9:93828051-93828052
2012-10-07 18:21:54,427 - DEBUG - Taking top 8 variants by coverage in window 9:93836886-93836887
2012-10-07 18:21:55,052 - DEBUG - Taking top 8 variants by coverage in window 9:93845707-93845708
2012-10-07 18:21:55,701 - DEBUG - Taking top 8 variants by coverage in window 9:93858066-93858067
2012-10-07 18:21:55,793 - DEBUG - Taking top 8 variants by coverage in window 9:93858428-93858431
2012-10-07 18:21:55,997 - DEBUG - Taking top 8 variants by coverage in window 9:93862474-93862475
2012-10-07 18:21:56,197 - DEBUG - Taking top 8 variants by coverage in window 9:93865240-93865248
2012-10-07 18:21:56,379 - DEBUG - Taking top 8 variants by coverage in window 9:93869239-93869245
2012-10-07 18:21:56,546 - DEBUG - Taking top 8 variants by coverage in window 9:93870691-93870700
2012-10-07 18:21:56,866 - DEBUG - Taking top 8 variants by coverage in window 9:93874407-93874410
2012-10-07 18:21:57,063 - DEBUG - Taking top 8 variants by coverage in window 9:93874480-93874481
2012-10-07 18:21:58,333 - DEBUG - Taking top 8 variants by coverage in window 9:93892144-93892145
2012-10-07 18:21:59,363 - DEBUG - Taking top 8 variants by coverage in window 9:93903466-93903467
2012-10-07 18:21:59,722 - DEBUG - Taking top 8 variants by coverage in window 9:93910128-93910129
2012-10-07 18:22:00,657 - DEBUG - Taking top 8 variants by coverage in window 9:93921684-93921686
2012-10-07 18:22:03,669 - DEBUG - Taking top 8 variants by coverage in window 9:93960539-93960543
2012-10-07 18:22:03,929 - DEBUG - Taking top 8 variants by coverage in window 9:93960583-93960585
2012-10-07 18:22:04,002 - DEBUG - Taking top 8 variants by coverage in window 9:93960587-93960590
2012-10-07 18:22:04,130 - DEBUG - Taking top 8 variants by coverage in window 9:93960591-93960593
2012-10-07 18:22:05,018 - DEBUG - Taking top 8 variants by coverage in window 9:93970913-93970914
2012-10-07 18:22:07,926 - DEBUG - Read 89053 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 18:22:08,152 - DEBUG - Read 96195 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 18:22:08,410 - DEBUG - Read 113835 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 18:22:08,678 - DEBUG - Read 111547 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 18:22:08,939 - DEBUG - Read 107116 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 18:22:09,170 - DEBUG - Read 100260 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 18:22:09,411 - DEBUG - Read 106221 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 18:22:09,644 - DEBUG - Read 95324 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 18:22:09,863 - DEBUG - Read 91441 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 18:22:10,091 - DEBUG - Read 93634 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 18:22:10,333 - DEBUG - Read 103361 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 18:22:10,545 - DEBUG - Read 91752 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 18:22:10,801 - DEBUG - Read 92810 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 18:22:11,028 - DEBUG - Read 103170 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 18:22:11,280 - DEBUG - Read 111396 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 18:22:11,489 - DEBUG - Read 85562 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 18:22:11,725 - DEBUG - Read 107297 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 18:22:11,969 - DEBUG - Read 104255 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 18:22:12,169 - DEBUG - Read 85787 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 18:22:12,389 - DEBUG - Read 89384 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 18:22:12,487 - DEBUG - Detected 22246 variants in 89053 reads
2012-10-07 18:22:12,641 - DEBUG - Detected 31065 variants in 96195 reads
2012-10-07 18:22:12,845 - DEBUG - Detected 39050 variants in 113835 reads
2012-10-07 18:22:13,073 - DEBUG - Detected 45887 variants in 111547 reads
2012-10-07 18:22:13,326 - DEBUG - Detected 51501 variants in 107116 reads
2012-10-07 18:22:13,598 - DEBUG - Detected 56689 variants in 100260 reads
2012-10-07 18:22:13,921 - DEBUG - Detected 68940 variants in 106221 reads
2012-10-07 18:22:14,269 - DEBUG - Detected 74105 variants in 95324 reads
2012-10-07 18:22:14,628 - DEBUG - Detected 78771 variants in 91441 reads
2012-10-07 18:22:15,017 - DEBUG - Detected 82981 variants in 93634 reads
2012-10-07 18:22:15,426 - DEBUG - Detected 86736 variants in 103361 reads
2012-10-07 18:22:15,842 - DEBUG - Detected 90446 variants in 91752 reads
2012-10-07 18:22:16,272 - DEBUG - Detected 93739 variants in 92810 reads
2012-10-07 18:22:16,759 - DEBUG - Detected 97317 variants in 103170 reads
2012-10-07 18:22:17,242 - DEBUG - Detected 103827 variants in 111396 reads
2012-10-07 18:22:17,726 - DEBUG - Detected 107143 variants in 85562 reads
2012-10-07 18:22:18,246 - DEBUG - Detected 110209 variants in 107297 reads
2012-10-07 18:22:18,775 - DEBUG - Detected 113821 variants in 104255 reads
2012-10-07 18:22:19,303 - DEBUG - Detected 117457 variants in 85787 reads
2012-10-07 18:22:19,898 - DEBUG - Detected 121544 variants in 89384 reads
2012-10-07 18:22:23,157 - DEBUG - Taking top 8 variants by coverage in window 9:94025782-94025786
2012-10-07 18:22:23,352 - DEBUG - Taking top 8 variants by coverage in window 9:94029367-94029368
2012-10-07 18:22:23,367 - DEBUG - Taking top 8 variants by coverage in window 9:94029374-94029375
2012-10-07 18:22:24,045 - DEBUG - Taking top 8 variants by coverage in window 9:94038715-94038716
2012-10-07 18:22:24,517 - DEBUG - Taking top 8 variants by coverage in window 9:94045053-94045054
2012-10-07 18:22:24,734 - DEBUG - Taking top 8 variants by coverage in window 9:94047967-94047968
2012-10-07 18:22:25,272 - DEBUG - Taking top 8 variants by coverage in window 9:94056820-94056821
2012-10-07 18:22:25,308 - DEBUG - Taking top 8 variants by coverage in window 9:94056866-94056867
2012-10-07 18:22:25,455 - DEBUG - Taking top 8 variants by coverage in window 9:94058072-94058074
2012-10-07 18:22:25,841 - DEBUG - Taking top 8 variants by coverage in window 9:94060943-94060944
2012-10-07 18:22:26,298 - DEBUG - Taking top 8 variants by coverage in window 9:94070528-94070531
2012-10-07 18:22:26,843 - DEBUG - Taking top 8 variants by coverage in window 9:94077587-94077588
2012-10-07 18:22:27,357 - DEBUG - Taking top 8 variants by coverage in window 9:94085019-94085020
2012-10-07 18:22:27,517 - DEBUG - Taking top 8 variants by coverage in window 9:94086588-94086589
2012-10-07 18:22:28,219 - DEBUG - Taking top 8 variants by coverage in window 9:94095708-94095709
2012-10-07 18:22:28,245 - DEBUG - Taking top 8 variants by coverage in window 9:94095733-94095734
2012-10-07 18:22:28,343 - DEBUG - Taking top 8 variants by coverage in window 9:94098409-94098410
2012-10-07 18:22:28,629 - DEBUG - Taking top 8 variants by coverage in window 9:94105001-94105002
2012-10-07 18:22:28,662 - DEBUG - Taking top 8 variants by coverage in window 9:94105124-94105125
2012-10-07 18:22:29,214 - DEBUG - Taking top 8 variants by coverage in window 9:94114650-94114651
2012-10-07 18:22:29,503 - DEBUG - Taking top 8 variants by coverage in window 9:94119978-94119979
2012-10-07 18:22:30,926 - DEBUG - Taking top 8 variants by coverage in window 9:94142087-94142090
2012-10-07 18:22:31,276 - DEBUG - Taking top 8 variants by coverage in window 9:94143374-94143375
2012-10-07 18:22:31,981 - DEBUG - Taking top 8 variants by coverage in window 9:94154591-94154592
2012-10-07 18:22:33,831 - DEBUG - Taking top 8 variants by coverage in window 9:94180537-94180542
2012-10-07 18:22:34,107 - DEBUG - Taking top 8 variants by coverage in window 9:94185114-94185120
2012-10-07 18:22:34,117 - DEBUG - Taking top 8 variants by coverage in window 9:94185121-94185122
2012-10-07 18:22:34,675 - DEBUG - Taking top 8 variants by coverage in window 9:94193789-94193790
2012-10-07 18:22:34,693 - DEBUG - Taking top 8 variants by coverage in window 9:94193802-94193803
2012-10-07 18:22:34,775 - DEBUG - Taking top 8 variants by coverage in window 9:94194357-94194358
2012-10-07 18:22:35,230 - DEBUG - Taking top 8 variants by coverage in window 9:94199564-94199565
2012-10-07 18:22:35,670 - DEBUG - Taking top 8 variants by coverage in window 9:94214064-94214065
2012-10-07 18:22:35,676 - DEBUG - Taking top 8 variants by coverage in window 9:94236580-94236581
2012-10-07 18:22:36,817 - DEBUG - Taking top 8 variants by coverage in window 9:94256348-94256351
2012-10-07 18:22:37,229 - DEBUG - Taking top 8 variants by coverage in window 9:94260193-94260194
2012-10-07 18:22:37,619 - DEBUG - Taking top 8 variants by coverage in window 9:94263687-94263692
2012-10-07 18:22:37,923 - DEBUG - Taking top 8 variants by coverage in window 9:94263711-94263714
2012-10-07 18:22:38,024 - DEBUG - Taking top 8 variants by coverage in window 9:94263727-94263731
2012-10-07 18:22:38,221 - DEBUG - Taking top 8 variants by coverage in window 9:94263735-94263737
2012-10-07 18:22:38,348 - DEBUG - Taking top 8 variants by coverage in window 9:94263751-94263754
2012-10-07 18:22:38,979 - DEBUG - Taking top 8 variants by coverage in window 9:94270548-94270549
2012-10-07 18:22:40,281 - DEBUG - Taking top 8 variants by coverage in window 9:94287199-94287206
2012-10-07 18:22:40,388 - DEBUG - Taking top 8 variants by coverage in window 9:94293663-94293664
2012-10-07 18:22:40,396 - DEBUG - Taking top 8 variants by coverage in window 9:94293664-94293666
2012-10-07 18:22:40,886 - DEBUG - Taking top 8 variants by coverage in window 9:94296608-94296609
2012-10-07 18:22:41,226 - DEBUG - Taking top 8 variants by coverage in window 9:94306795-94306796
2012-10-07 18:22:41,515 - DEBUG - Taking top 8 variants by coverage in window 9:94309460-94309461
2012-10-07 18:22:41,626 - DEBUG - Taking top 8 variants by coverage in window 9:94310850-94310851
2012-10-07 18:22:42,393 - DEBUG - Taking top 8 variants by coverage in window 9:94319660-94319661
2012-10-07 18:22:42,425 - DEBUG - Taking top 8 variants by coverage in window 9:94319701-94319702
2012-10-07 18:22:42,722 - DEBUG - Taking top 8 variants by coverage in window 9:94323076-94323089
2012-10-07 18:22:42,766 - DEBUG - Taking top 8 variants by coverage in window 9:94323106-94323109
2012-10-07 18:22:42,896 - DEBUG - Taking top 8 variants by coverage in window 9:94324707-94324714
2012-10-07 18:22:43,059 - DEBUG - Taking top 8 variants by coverage in window 9:94326012-94326015
2012-10-07 18:22:43,121 - DEBUG - Taking top 8 variants by coverage in window 9:94326698-94326699
2012-10-07 18:22:43,358 - DEBUG - Taking top 8 variants by coverage in window 9:94329110-94329111
2012-10-07 18:22:43,386 - DEBUG - Taking top 8 variants by coverage in window 9:94329112-94329113
2012-10-07 18:22:44,048 - DEBUG - Taking top 8 variants by coverage in window 9:94339330-94339331
2012-10-07 18:22:44,249 - DEBUG - Taking top 8 variants by coverage in window 9:94341716-94341717
2012-10-07 18:22:45,100 - DEBUG - Taking top 8 variants by coverage in window 9:94355091-94355092
2012-10-07 18:22:46,153 - DEBUG - Taking top 8 variants by coverage in window 9:94376260-94376264
2012-10-07 18:22:46,198 - DEBUG - Taking top 8 variants by coverage in window 9:94376429-94376430
2012-10-07 18:22:46,510 - DEBUG - Taking top 8 variants by coverage in window 9:94382128-94382129
2012-10-07 18:22:46,619 - DEBUG - Taking top 8 variants by coverage in window 9:94384240-94384241
2012-10-07 18:22:46,628 - DEBUG - Taking top 8 variants by coverage in window 9:94384257-94384258
2012-10-07 18:22:46,732 - DEBUG - Taking top 8 variants by coverage in window 9:94386725-94386726
2012-10-07 18:22:47,792 - DEBUG - Taking top 8 variants by coverage in window 9:94407187-94407194
2012-10-07 18:22:48,074 - DEBUG - Taking top 8 variants by coverage in window 9:94411082-94411083
2012-10-07 18:22:49,047 - DEBUG - Taking top 8 variants by coverage in window 9:94422470-94422482
2012-10-07 18:22:49,090 - DEBUG - Taking top 8 variants by coverage in window 9:94422501-94422502
2012-10-07 18:22:49,102 - DEBUG - Taking top 8 variants by coverage in window 9:94422503-94422504
2012-10-07 18:22:50,047 - DEBUG - Taking top 8 variants by coverage in window 9:94440955-94440957
2012-10-07 18:22:50,527 - DEBUG - Taking top 8 variants by coverage in window 9:94458100-94458104
2012-10-07 18:22:51,298 - DEBUG - Taking top 8 variants by coverage in window 9:94477799-94477800
2012-10-07 18:22:52,292 - DEBUG - Taking top 8 variants by coverage in window 9:94492116-94492118
2012-10-07 18:22:52,531 - DEBUG - Taking top 8 variants by coverage in window 9:94493695-94493698
2012-10-07 18:22:52,931 - DEBUG - Taking top 8 variants by coverage in window 9:94497117-94497133
2012-10-07 18:22:53,037 - DEBUG - Taking top 8 variants by coverage in window 9:94497222-94497233
2012-10-07 18:22:53,755 - DEBUG - Taking top 8 variants by coverage in window 9:94513395-94513396
2012-10-07 18:22:53,870 - DEBUG - Taking top 8 variants by coverage in window 9:94514813-94514820
2012-10-07 18:22:54,831 - DEBUG - Taking top 8 variants by coverage in window 9:94527674-94527675
2012-10-07 18:22:54,897 - DEBUG - Taking top 8 variants by coverage in window 9:94528475-94528476
2012-10-07 18:22:55,704 - DEBUG - Taking top 8 variants by coverage in window 9:94536005-94536006
2012-10-07 18:22:57,932 - DEBUG - Taking top 8 variants by coverage in window 9:94565574-94565575
2012-10-07 18:22:58,829 - DEBUG - Taking top 8 variants by coverage in window 9:94580635-94580636
2012-10-07 18:22:59,157 - DEBUG - Taking top 8 variants by coverage in window 9:94584284-94584287
2012-10-07 18:22:59,267 - DEBUG - Taking top 8 variants by coverage in window 9:94584975-94584976
2012-10-07 18:23:00,386 - DEBUG - Taking top 8 variants by coverage in window 9:94599236-94599237
2012-10-07 18:23:00,693 - DEBUG - Taking top 8 variants by coverage in window 9:94603060-94603062
2012-10-07 18:23:01,127 - DEBUG - Taking top 8 variants by coverage in window 9:94606839-94606840
2012-10-07 18:23:01,216 - DEBUG - Taking top 8 variants by coverage in window 9:94607789-94607791
2012-10-07 18:23:01,699 - DEBUG - Taking top 8 variants by coverage in window 9:94610721-94610722
2012-10-07 18:23:01,914 - DEBUG - Taking top 8 variants by coverage in window 9:94614158-94614160
2012-10-07 18:23:02,239 - DEBUG - Taking top 8 variants by coverage in window 9:94617758-94617759
2012-10-07 18:23:03,036 - DEBUG - Taking top 8 variants by coverage in window 9:94629842-94629852
2012-10-07 18:23:03,583 - DEBUG - Taking top 8 variants by coverage in window 9:94633580-94633583
2012-10-07 18:23:03,774 - DEBUG - Taking top 8 variants by coverage in window 9:94635258-94635259
2012-10-07 18:23:04,150 - DEBUG - Taking top 8 variants by coverage in window 9:94641271-94641272
2012-10-07 18:23:04,487 - DEBUG - Taking top 8 variants by coverage in window 9:94647596-94647597
2012-10-07 18:23:05,072 - DEBUG - Taking top 8 variants by coverage in window 9:94658008-94658009
2012-10-07 18:23:05,339 - DEBUG - Taking top 8 variants by coverage in window 9:94666366-94666369
2012-10-07 18:23:06,630 - DEBUG - Taking top 8 variants by coverage in window 9:94695241-94695242
2012-10-07 18:23:06,779 - DEBUG - Taking top 8 variants by coverage in window 9:94699269-94699270
2012-10-07 18:23:06,976 - DEBUG - Taking top 8 variants by coverage in window 9:94701191-94701192
2012-10-07 18:23:07,931 - DEBUG - Taking top 8 variants by coverage in window 9:94717593-94717596
2012-10-07 18:23:08,272 - DEBUG - Taking top 8 variants by coverage in window 9:94718241-94718242
2012-10-07 18:23:08,545 - DEBUG - Taking top 8 variants by coverage in window 9:94722105-94722106
2012-10-07 18:23:08,557 - DEBUG - Taking top 8 variants by coverage in window 9:94722120-94722121
2012-10-07 18:23:08,682 - DEBUG - Taking top 8 variants by coverage in window 9:94729334-94729336
2012-10-07 18:23:10,067 - DEBUG - Taking top 8 variants by coverage in window 9:94748591-94748593
2012-10-07 18:23:10,652 - DEBUG - Taking top 8 variants by coverage in window 9:94755952-94755953
2012-10-07 18:23:11,009 - DEBUG - Taking top 8 variants by coverage in window 9:94760028-94760029
2012-10-07 18:23:11,053 - DEBUG - Taking top 8 variants by coverage in window 9:94760930-94760931
2012-10-07 18:23:11,744 - DEBUG - Taking top 8 variants by coverage in window 9:94770512-94770513
2012-10-07 18:23:13,238 - DEBUG - Taking top 8 variants by coverage in window 9:94791684-94791685
2012-10-07 18:23:13,413 - DEBUG - Taking top 8 variants by coverage in window 9:94793174-94793176
2012-10-07 18:23:13,495 - DEBUG - Taking top 8 variants by coverage in window 9:94793177-94793179
2012-10-07 18:23:15,499 - DEBUG - Taking top 8 variants by coverage in window 9:94816292-94816295
2012-10-07 18:23:15,534 - DEBUG - Taking top 8 variants by coverage in window 9:94821864-94821865
2012-10-07 18:23:16,249 - DEBUG - Taking top 8 variants by coverage in window 9:94830517-94830518
2012-10-07 18:23:16,827 - DEBUG - Taking top 8 variants by coverage in window 9:94838744-94838747
2012-10-07 18:23:16,894 - DEBUG - Taking top 8 variants by coverage in window 9:94839241-94839242
2012-10-07 18:23:16,982 - DEBUG - Taking top 8 variants by coverage in window 9:94840298-94840302
2012-10-07 18:23:18,990 - DEBUG - Taking top 8 variants by coverage in window 9:94872338-94872339
2012-10-07 18:23:19,460 - DEBUG - Taking top 8 variants by coverage in window 9:94881004-94881005
2012-10-07 18:23:19,589 - DEBUG - Taking top 8 variants by coverage in window 9:94881794-94881795
2012-10-07 18:23:19,948 - DEBUG - Taking top 8 variants by coverage in window 9:94887927-94887933
2012-10-07 18:23:20,607 - DEBUG - Taking top 8 variants by coverage in window 9:94900892-94900902
2012-10-07 18:23:20,670 - DEBUG - Taking top 8 variants by coverage in window 9:94900959-94900961
2012-10-07 18:23:20,963 - DEBUG - Taking top 8 variants by coverage in window 9:94906370-94906371
2012-10-07 18:23:21,784 - DEBUG - Taking top 8 variants by coverage in window 9:94920613-94920614
2012-10-07 18:23:21,811 - DEBUG - Taking top 8 variants by coverage in window 9:94920619-94920620
2012-10-07 18:23:21,945 - DEBUG - Taking top 8 variants by coverage in window 9:94923319-94923320
2012-10-07 18:23:22,850 - DEBUG - Taking top 8 variants by coverage in window 9:94934612-94934613
2012-10-07 18:23:22,938 - DEBUG - Taking top 8 variants by coverage in window 9:94936842-94936843
2012-10-07 18:23:22,960 - DEBUG - Taking top 8 variants by coverage in window 9:94937055-94937056
2012-10-07 18:23:22,989 - DEBUG - Taking top 8 variants by coverage in window 9:94937081-94937082
2012-10-07 18:23:23,391 - DEBUG - Taking top 8 variants by coverage in window 9:94942612-94942613
2012-10-07 18:23:23,498 - DEBUG - Taking top 8 variants by coverage in window 9:94943944-94943945
2012-10-07 18:23:23,573 - DEBUG - Taking top 8 variants by coverage in window 9:94944986-94944987
2012-10-07 18:23:24,306 - DEBUG - Taking top 8 variants by coverage in window 9:94960044-94960047
2012-10-07 18:23:24,542 - DEBUG - Taking top 8 variants by coverage in window 9:94960065-94960066
2012-10-07 18:23:24,590 - DEBUG - Taking top 8 variants by coverage in window 9:94960313-94960314
2012-10-07 18:23:24,598 - DEBUG - Taking top 8 variants by coverage in window 9:94960337-94960338
2012-10-07 18:23:24,767 - DEBUG - Taking top 8 variants by coverage in window 9:94962463-94962471
2012-10-07 18:23:25,396 - DEBUG - Taking top 8 variants by coverage in window 9:94972156-94972166
2012-10-07 18:23:26,359 - DEBUG - Taking top 8 variants by coverage in window 9:94984302-94984303
2012-10-07 18:23:26,427 - DEBUG - Taking top 8 variants by coverage in window 9:94984337-94984338
2012-10-07 18:23:27,077 - DEBUG - Taking top 8 variants by coverage in window 9:94997816-94997819
2012-10-07 18:23:27,110 - DEBUG - Taking top 8 variants by coverage in window 9:94997997-94997999
2012-10-07 18:23:27,999 - INFO - Processing region 9:95000000-96000000
2012-10-07 18:23:28,215 - DEBUG - Read 93031 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 18:23:28,449 - DEBUG - Read 100597 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 18:23:28,701 - DEBUG - Read 117941 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 18:23:28,977 - DEBUG - Read 116327 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 18:23:29,243 - DEBUG - Read 111202 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 18:23:29,481 - DEBUG - Read 105661 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 18:23:29,730 - DEBUG - Read 112045 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 18:23:29,972 - DEBUG - Read 101119 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 18:23:30,199 - DEBUG - Read 96236 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 18:23:30,435 - DEBUG - Read 99313 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 18:23:30,684 - DEBUG - Read 108170 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 18:23:30,903 - DEBUG - Read 96045 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 18:23:31,164 - DEBUG - Read 97189 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 18:23:31,398 - DEBUG - Read 108484 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 18:23:31,654 - DEBUG - Read 117025 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 18:23:31,868 - DEBUG - Read 89007 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 18:23:32,111 - DEBUG - Read 112637 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 18:23:32,362 - DEBUG - Read 109395 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 18:23:32,569 - DEBUG - Read 90748 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 18:23:32,862 - DEBUG - Read 94097 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 18:23:32,961 - DEBUG - Detected 21182 variants in 93031 reads
2012-10-07 18:23:33,120 - DEBUG - Detected 31288 variants in 100597 reads
2012-10-07 18:23:33,332 - DEBUG - Detected 38759 variants in 117941 reads
2012-10-07 18:23:33,573 - DEBUG - Detected 45711 variants in 116327 reads
2012-10-07 18:23:33,839 - DEBUG - Detected 51308 variants in 111202 reads
2012-10-07 18:23:34,149 - DEBUG - Detected 56594 variants in 105661 reads
2012-10-07 18:23:34,474 - DEBUG - Detected 69327 variants in 112045 reads
2012-10-07 18:23:34,843 - DEBUG - Detected 74610 variants in 101119 reads
2012-10-07 18:23:35,241 - DEBUG - Detected 82922 variants in 96236 reads
2012-10-07 18:23:35,672 - DEBUG - Detected 87595 variants in 99313 reads
2012-10-07 18:23:36,129 - DEBUG - Detected 92162 variants in 108170 reads
2012-10-07 18:23:36,637 - DEBUG - Detected 95616 variants in 96045 reads
2012-10-07 18:23:37,122 - DEBUG - Detected 99352 variants in 97189 reads
2012-10-07 18:23:37,636 - DEBUG - Detected 103355 variants in 108484 reads
2012-10-07 18:23:38,176 - DEBUG - Detected 110040 variants in 117025 reads
2012-10-07 18:23:38,723 - DEBUG - Detected 113471 variants in 89007 reads
2012-10-07 18:23:39,307 - DEBUG - Detected 117068 variants in 112637 reads
2012-10-07 18:23:39,954 - DEBUG - Detected 120923 variants in 109395 reads
2012-10-07 18:23:40,550 - DEBUG - Detected 124556 variants in 90748 reads
2012-10-07 18:23:41,165 - DEBUG - Detected 129583 variants in 94097 reads
2012-10-07 18:23:42,395 - DEBUG - Taking top 8 variants by coverage in window 9:95007826-95007827
2012-10-07 18:23:42,863 - DEBUG - Taking top 8 variants by coverage in window 9:95016097-95016098
2012-10-07 18:23:42,878 - DEBUG - Taking top 8 variants by coverage in window 9:95016117-95016118
2012-10-07 18:23:43,135 - DEBUG - Taking top 8 variants by coverage in window 9:95021179-95021180
2012-10-07 18:23:43,363 - DEBUG - Taking top 8 variants by coverage in window 9:95022845-95022850
2012-10-07 18:23:43,669 - DEBUG - Taking top 8 variants by coverage in window 9:95024974-95024975
2012-10-07 18:23:43,719 - DEBUG - Taking top 8 variants by coverage in window 9:95024989-95024991
2012-10-07 18:23:44,193 - DEBUG - Taking top 8 variants by coverage in window 9:95033558-95033559
2012-10-07 18:23:45,418 - DEBUG - Taking top 8 variants by coverage in window 9:95056458-95056459
2012-10-07 18:23:45,427 - DEBUG - Taking top 8 variants by coverage in window 9:95056491-95056492
2012-10-07 18:23:45,592 - DEBUG - Taking top 8 variants by coverage in window 9:95059402-95059403
2012-10-07 18:23:45,734 - DEBUG - Taking top 8 variants by coverage in window 9:95063475-95063476
2012-10-07 18:23:45,739 - DEBUG - Taking top 8 variants by coverage in window 9:95063476-95063477
2012-10-07 18:23:45,877 - DEBUG - Taking top 8 variants by coverage in window 9:95063533-95063538
2012-10-07 18:23:46,119 - DEBUG - Taking top 8 variants by coverage in window 9:95065811-95065812
2012-10-07 18:23:46,564 - DEBUG - Taking top 8 variants by coverage in window 9:95074327-95074333
2012-10-07 18:23:46,751 - DEBUG - Taking top 8 variants by coverage in window 9:95076686-95076688
2012-10-07 18:23:46,798 - DEBUG - Taking top 8 variants by coverage in window 9:95076722-95076723
2012-10-07 18:23:47,048 - DEBUG - Taking top 8 variants by coverage in window 9:95081242-95081243
2012-10-07 18:23:47,297 - DEBUG - Taking top 8 variants by coverage in window 9:95090618-95090627
2012-10-07 18:23:47,381 - DEBUG - Taking top 8 variants by coverage in window 9:95091803-95091806
2012-10-07 18:23:47,397 - DEBUG - Taking top 8 variants by coverage in window 9:95091809-95091810
2012-10-07 18:23:49,043 - DEBUG - Taking top 8 variants by coverage in window 9:95119707-95119708
2012-10-07 18:23:49,071 - DEBUG - Taking top 8 variants by coverage in window 9:95119764-95119777
2012-10-07 18:23:49,174 - DEBUG - Taking top 8 variants by coverage in window 9:95119795-95119796
2012-10-07 18:23:49,703 - DEBUG - Taking top 8 variants by coverage in window 9:95128266-95128267
2012-10-07 18:23:49,783 - DEBUG - Taking top 8 variants by coverage in window 9:95128303-95128304
2012-10-07 18:23:49,794 - DEBUG - Taking top 8 variants by coverage in window 9:95128304-95128306
2012-10-07 18:23:49,993 - DEBUG - Taking top 8 variants by coverage in window 9:95131207-95131209
2012-10-07 18:23:50,408 - DEBUG - Taking top 8 variants by coverage in window 9:95137960-95137961
2012-10-07 18:23:51,151 - DEBUG - Taking top 8 variants by coverage in window 9:95155488-95155489
2012-10-07 18:23:51,669 - DEBUG - Taking top 8 variants by coverage in window 9:95164298-95164299
2012-10-07 18:23:51,874 - DEBUG - Taking top 8 variants by coverage in window 9:95165975-95165976
2012-10-07 18:23:52,678 - DEBUG - Taking top 8 variants by coverage in window 9:95178962-95178963
2012-10-07 18:23:52,883 - DEBUG - Taking top 8 variants by coverage in window 9:95181282-95181283
2012-10-07 18:23:52,910 - DEBUG - Taking top 8 variants by coverage in window 9:95181301-95181302
2012-10-07 18:23:52,948 - DEBUG - Taking top 8 variants by coverage in window 9:95181568-95181571
2012-10-07 18:23:53,000 - DEBUG - Taking top 8 variants by coverage in window 9:95181613-95181621
2012-10-07 18:23:53,099 - DEBUG - Taking top 8 variants by coverage in window 9:95182977-95182995
2012-10-07 18:23:53,527 - DEBUG - Taking top 8 variants by coverage in window 9:95191124-95191125
2012-10-07 18:23:53,628 - DEBUG - Taking top 8 variants by coverage in window 9:95192484-95192488
2012-10-07 18:23:53,662 - DEBUG - Taking top 8 variants by coverage in window 9:95200024-95200025
2012-10-07 18:23:54,057 - DEBUG - Taking top 8 variants by coverage in window 9:95204202-95204203
2012-10-07 18:23:55,409 - DEBUG - Taking top 8 variants by coverage in window 9:95219888-95219889
2012-10-07 18:23:55,493 - DEBUG - Taking top 8 variants by coverage in window 9:95222277-95222283
2012-10-07 18:23:55,515 - DEBUG - Taking top 8 variants by coverage in window 9:95222289-95222290
2012-10-07 18:23:55,935 - DEBUG - Taking top 8 variants by coverage in window 9:95227109-95227110
2012-10-07 18:23:55,984 - DEBUG - Taking top 8 variants by coverage in window 9:95227542-95227543
2012-10-07 18:23:56,148 - DEBUG - Taking top 8 variants by coverage in window 9:95228767-95228768
2012-10-07 18:23:56,381 - DEBUG - Taking top 8 variants by coverage in window 9:95230991-95230992
2012-10-07 18:23:57,731 - DEBUG - Taking top 8 variants by coverage in window 9:95246369-95246372
2012-10-07 18:23:58,365 - DEBUG - Taking top 8 variants by coverage in window 9:95256050-95256060
2012-10-07 18:23:59,401 - DEBUG - Taking top 8 variants by coverage in window 9:95273210-95273211
2012-10-07 18:23:59,463 - DEBUG - Taking top 8 variants by coverage in window 9:95273990-95273991
2012-10-07 18:23:59,686 - DEBUG - Taking top 8 variants by coverage in window 9:95276217-95276218
2012-10-07 18:24:00,085 - DEBUG - Taking top 8 variants by coverage in window 9:95280654-95280655
2012-10-07 18:24:00,643 - DEBUG - Taking top 8 variants by coverage in window 9:95290726-95290727
2012-10-07 18:24:00,664 - DEBUG - Taking top 8 variants by coverage in window 9:95290730-95290731
2012-10-07 18:24:00,786 - DEBUG - Taking top 8 variants by coverage in window 9:95292406-95292407
2012-10-07 18:24:01,465 - DEBUG - Taking top 8 variants by coverage in window 9:95304855-95304858
2012-10-07 18:24:01,824 - DEBUG - Taking top 8 variants by coverage in window 9:95313787-95313788
2012-10-07 18:24:03,027 - DEBUG - Taking top 8 variants by coverage in window 9:95332519-95332520
2012-10-07 18:24:03,474 - DEBUG - Taking top 8 variants by coverage in window 9:95338174-95338180
2012-10-07 18:24:04,404 - DEBUG - Taking top 8 variants by coverage in window 9:95354140-95354141
2012-10-07 18:24:04,533 - DEBUG - Taking top 8 variants by coverage in window 9:95356534-95356537
2012-10-07 18:24:04,654 - DEBUG - Taking top 8 variants by coverage in window 9:95359232-95359233
2012-10-07 18:24:04,781 - DEBUG - Taking top 8 variants by coverage in window 9:95363671-95363672
2012-10-07 18:24:05,201 - DEBUG - Taking top 8 variants by coverage in window 9:95371598-95371599
2012-10-07 18:24:05,346 - DEBUG - Taking top 8 variants by coverage in window 9:95375551-95375552
2012-10-07 18:24:06,008 - DEBUG - Taking top 8 variants by coverage in window 9:95398189-95398190
2012-10-07 18:24:06,121 - DEBUG - Taking top 8 variants by coverage in window 9:95400536-95400537
2012-10-07 18:24:06,180 - DEBUG - Taking top 8 variants by coverage in window 9:95400878-95400879
2012-10-07 18:24:07,445 - DEBUG - Taking top 8 variants by coverage in window 9:95425580-95425581
2012-10-07 18:24:07,461 - DEBUG - Taking top 8 variants by coverage in window 9:95425596-95425597
2012-10-07 18:24:08,859 - DEBUG - Taking top 8 variants by coverage in window 9:95442639-95442640
2012-10-07 18:24:08,868 - DEBUG - Taking top 8 variants by coverage in window 9:95442642-95442643
2012-10-07 18:24:09,025 - DEBUG - Taking top 8 variants by coverage in window 9:95444189-95444190
2012-10-07 18:24:09,125 - DEBUG - Taking top 8 variants by coverage in window 9:95445009-95445015
2012-10-07 18:24:09,207 - DEBUG - Taking top 8 variants by coverage in window 9:95445084-95445085
2012-10-07 18:24:09,243 - DEBUG - Taking top 8 variants by coverage in window 9:95445115-95445119
2012-10-07 18:24:09,305 - DEBUG - Taking top 8 variants by coverage in window 9:95445154-95445156
2012-10-07 18:24:09,430 - DEBUG - Taking top 8 variants by coverage in window 9:95445250-95445268
2012-10-07 18:24:09,501 - DEBUG - Taking top 8 variants by coverage in window 9:95445277-95445280
2012-10-07 18:24:10,226 - DEBUG - Taking top 8 variants by coverage in window 9:95448741-95448742
2012-10-07 18:24:10,443 - DEBUG - Taking top 8 variants by coverage in window 9:95451625-95451626
2012-10-07 18:24:10,756 - DEBUG - Taking top 8 variants by coverage in window 9:95454014-95454016
2012-10-07 18:24:12,107 - DEBUG - Taking top 8 variants by coverage in window 9:95474365-95474366
2012-10-07 18:24:12,644 - DEBUG - Taking top 8 variants by coverage in window 9:95479950-95479951
2012-10-07 18:24:13,392 - DEBUG - Taking top 8 variants by coverage in window 9:95489137-95489142
2012-10-07 18:24:13,484 - DEBUG - Taking top 8 variants by coverage in window 9:95489149-95489152
2012-10-07 18:24:13,752 - DEBUG - Taking top 8 variants by coverage in window 9:95489236-95489239
2012-10-07 18:24:13,854 - DEBUG - Taking top 8 variants by coverage in window 9:95489288-95489289
2012-10-07 18:24:13,889 - DEBUG - Taking top 8 variants by coverage in window 9:95489302-95489304
2012-10-07 18:24:14,628 - DEBUG - Taking top 8 variants by coverage in window 9:95494710-95494711
2012-10-07 18:24:14,797 - DEBUG - Taking top 8 variants by coverage in window 9:95496041-95496056
2012-10-07 18:24:14,928 - DEBUG - Taking top 8 variants by coverage in window 9:95497276-95497277
2012-10-07 18:24:15,151 - DEBUG - Taking top 8 variants by coverage in window 9:95498480-95498481
2012-10-07 18:24:15,180 - DEBUG - Taking top 8 variants by coverage in window 9:95498489-95498490
2012-10-07 18:24:16,884 - DEBUG - Taking top 8 variants by coverage in window 9:95508684-95508685
2012-10-07 18:24:17,825 - DEBUG - Taking top 8 variants by coverage in window 9:95514992-95515006
2012-10-07 18:24:18,190 - DEBUG - Taking top 8 variants by coverage in window 9:95518654-95518655
2012-10-07 18:24:18,237 - DEBUG - Taking top 8 variants by coverage in window 9:95518713-95518714
2012-10-07 18:24:18,342 - DEBUG - Taking top 8 variants by coverage in window 9:95519011-95519015
2012-10-07 18:24:18,468 - DEBUG - Taking top 8 variants by coverage in window 9:95519087-95519088
2012-10-07 18:24:18,481 - DEBUG - Taking top 8 variants by coverage in window 9:95519088-95519091
2012-10-07 18:24:18,920 - DEBUG - Taking top 8 variants by coverage in window 9:95519105-95519107
2012-10-07 18:24:19,069 - DEBUG - Taking top 8 variants by coverage in window 9:95520071-95520076
2012-10-07 18:24:19,235 - DEBUG - Taking top 8 variants by coverage in window 9:95520922-95520923
2012-10-07 18:24:19,248 - DEBUG - Taking top 8 variants by coverage in window 9:95520924-95520925
2012-10-07 18:24:20,596 - DEBUG - Taking top 8 variants by coverage in window 9:95541088-95541089
2012-10-07 18:24:20,648 - DEBUG - Taking top 8 variants by coverage in window 9:95541405-95541407
2012-10-07 18:24:20,917 - DEBUG - Taking top 8 variants by coverage in window 9:95543359-95543360
2012-10-07 18:24:21,285 - DEBUG - Taking top 8 variants by coverage in window 9:95549113-95549114
2012-10-07 18:24:21,482 - DEBUG - Taking top 8 variants by coverage in window 9:95550407-95550408
2012-10-07 18:24:21,736 - DEBUG - Taking top 8 variants by coverage in window 9:95553127-95553128
2012-10-07 18:24:22,221 - DEBUG - Taking top 8 variants by coverage in window 9:95557355-95557356
2012-10-07 18:24:22,314 - DEBUG - Taking top 8 variants by coverage in window 9:95558007-95558014
2012-10-07 18:24:23,341 - DEBUG - Taking top 8 variants by coverage in window 9:95569257-95569264
2012-10-07 18:24:24,795 - DEBUG - Taking top 8 variants by coverage in window 9:95573517-95573518
2012-10-07 18:24:25,148 - DEBUG - Taking top 8 variants by coverage in window 9:95577433-95577434
2012-10-07 18:24:25,226 - DEBUG - Taking top 8 variants by coverage in window 9:95578228-95578229
2012-10-07 18:24:25,360 - DEBUG - Taking top 8 variants by coverage in window 9:95579119-95579120
2012-10-07 18:24:25,514 - DEBUG - Taking top 8 variants by coverage in window 9:95579848-95579849
2012-10-07 18:24:25,653 - DEBUG - Taking top 8 variants by coverage in window 9:95581370-95581371
2012-10-07 18:24:25,665 - DEBUG - Taking top 8 variants by coverage in window 9:95581371-95581376
2012-10-07 18:24:25,753 - DEBUG - Taking top 8 variants by coverage in window 9:95581428-95581434
2012-10-07 18:24:26,646 - DEBUG - Taking top 8 variants by coverage in window 9:95592709-95592719
2012-10-07 18:24:26,819 - DEBUG - Taking top 8 variants by coverage in window 9:95592733-95592743
2012-10-07 18:24:27,374 - DEBUG - Taking top 8 variants by coverage in window 9:95593443-95593444
2012-10-07 18:24:27,820 - DEBUG - Taking top 8 variants by coverage in window 9:95599429-95599434
2012-10-07 18:24:28,796 - DEBUG - Taking top 8 variants by coverage in window 9:95608492-95608493
2012-10-07 18:24:28,857 - DEBUG - Taking top 8 variants by coverage in window 9:95609692-95609695
2012-10-07 18:24:29,154 - DEBUG - Taking top 8 variants by coverage in window 9:95613092-95613093
2012-10-07 18:24:29,484 - DEBUG - Taking top 8 variants by coverage in window 9:95615724-95615725
2012-10-07 18:24:29,594 - DEBUG - Taking top 8 variants by coverage in window 9:95617044-95617046
2012-10-07 18:24:29,847 - DEBUG - Taking top 8 variants by coverage in window 9:95619676-95619677
2012-10-07 18:24:32,599 - DEBUG - Taking top 8 variants by coverage in window 9:95662488-95662489
2012-10-07 18:24:32,776 - DEBUG - Taking top 8 variants by coverage in window 9:95664191-95664192
2012-10-07 18:24:34,685 - DEBUG - Taking top 8 variants by coverage in window 9:95690616-95690618
2012-10-07 18:24:34,991 - DEBUG - Taking top 8 variants by coverage in window 9:95693432-95693433
2012-10-07 18:24:35,072 - DEBUG - Taking top 8 variants by coverage in window 9:95693982-95693983
2012-10-07 18:24:35,454 - DEBUG - Taking top 8 variants by coverage in window 9:95699110-95699111
2012-10-07 18:24:35,734 - DEBUG - Taking top 8 variants by coverage in window 9:95700682-95700691
2012-10-07 18:24:36,007 - DEBUG - Taking top 8 variants by coverage in window 9:95703348-95703359
2012-10-07 18:24:36,693 - DEBUG - Taking top 8 variants by coverage in window 9:95713791-95713794
2012-10-07 18:24:36,718 - DEBUG - Taking top 8 variants by coverage in window 9:95713982-95713983
2012-10-07 18:24:37,226 - DEBUG - Taking top 8 variants by coverage in window 9:95720222-95720224
2012-10-07 18:24:37,432 - DEBUG - Taking top 8 variants by coverage in window 9:95720861-95720862
2012-10-07 18:24:38,793 - DEBUG - Taking top 8 variants by coverage in window 9:95740605-95740606
2012-10-07 18:24:38,989 - DEBUG - Taking top 8 variants by coverage in window 9:95743800-95743801
2012-10-07 18:24:39,514 - DEBUG - Taking top 8 variants by coverage in window 9:95751168-95751169
2012-10-07 18:24:40,006 - DEBUG - Taking top 8 variants by coverage in window 9:95757837-95757839
2012-10-07 18:24:40,401 - DEBUG - Taking top 8 variants by coverage in window 9:95776193-95776194
2012-10-07 18:24:40,413 - DEBUG - Taking top 8 variants by coverage in window 9:95776221-95776222
2012-10-07 18:24:40,559 - DEBUG - Taking top 8 variants by coverage in window 9:95781357-95781364
2012-10-07 18:24:40,657 - DEBUG - Taking top 8 variants by coverage in window 9:95782509-95782512
2012-10-07 18:24:40,828 - DEBUG - Taking top 8 variants by coverage in window 9:95787941-95787942
2012-10-07 18:24:41,131 - DEBUG - Taking top 8 variants by coverage in window 9:95794972-95794973
2012-10-07 18:24:43,210 - DEBUG - Taking top 8 variants by coverage in window 9:95860849-95860850
2012-10-07 18:24:43,302 - DEBUG - Taking top 8 variants by coverage in window 9:95863521-95863522
2012-10-07 18:24:43,446 - DEBUG - Taking top 8 variants by coverage in window 9:95867317-95867318
2012-10-07 18:24:43,485 - DEBUG - Taking top 8 variants by coverage in window 9:95868525-95868532
2012-10-07 18:24:43,646 - DEBUG - Taking top 8 variants by coverage in window 9:95870137-95870138
2012-10-07 18:24:43,823 - DEBUG - Taking top 8 variants by coverage in window 9:95872801-95872802
2012-10-07 18:24:44,347 - DEBUG - Taking top 8 variants by coverage in window 9:95883421-95883422
2012-10-07 18:24:44,995 - DEBUG - Taking top 8 variants by coverage in window 9:95890661-95890668
2012-10-07 18:24:45,066 - DEBUG - Taking top 8 variants by coverage in window 9:95891721-95891722
2012-10-07 18:24:45,241 - DEBUG - Taking top 8 variants by coverage in window 9:95893651-95893661
2012-10-07 18:24:46,272 - DEBUG - Taking top 8 variants by coverage in window 9:95917210-95917215
2012-10-07 18:24:46,287 - DEBUG - Taking top 8 variants by coverage in window 9:95917232-95917233
2012-10-07 18:24:46,348 - DEBUG - Taking top 8 variants by coverage in window 9:95917772-95917773
2012-10-07 18:24:47,185 - DEBUG - Taking top 8 variants by coverage in window 9:95930176-95930177
2012-10-07 18:24:47,684 - DEBUG - Taking top 8 variants by coverage in window 9:95938002-95938003
2012-10-07 18:24:48,228 - DEBUG - Taking top 8 variants by coverage in window 9:95946936-95946937
2012-10-07 18:24:48,607 - DEBUG - Taking top 8 variants by coverage in window 9:95957508-95957509
2012-10-07 18:24:48,760 - DEBUG - Taking top 8 variants by coverage in window 9:95960964-95960965
2012-10-07 18:24:48,908 - DEBUG - Taking top 8 variants by coverage in window 9:95962381-95962385
2012-10-07 18:24:49,125 - DEBUG - Taking top 8 variants by coverage in window 9:95964987-95964988
2012-10-07 18:24:49,159 - DEBUG - Taking top 8 variants by coverage in window 9:95965598-95965599
2012-10-07 18:24:49,466 - DEBUG - Taking top 8 variants by coverage in window 9:95970245-95970247
2012-10-07 18:24:49,891 - DEBUG - Taking top 8 variants by coverage in window 9:95975222-95975223
2012-10-07 18:24:49,985 - DEBUG - Taking top 8 variants by coverage in window 9:95975765-95975766
2012-10-07 18:24:50,048 - DEBUG - Taking top 8 variants by coverage in window 9:95976205-95976206
2012-10-07 18:24:50,389 - DEBUG - Taking top 8 variants by coverage in window 9:95979212-95979213
2012-10-07 18:24:50,395 - DEBUG - Taking top 8 variants by coverage in window 9:95979243-95979244
2012-10-07 18:24:50,428 - DEBUG - Taking top 8 variants by coverage in window 9:95979264-95979265
2012-10-07 18:24:50,694 - DEBUG - Taking top 8 variants by coverage in window 9:95985189-95985190
2012-10-07 18:24:50,983 - DEBUG - Taking top 8 variants by coverage in window 9:95987821-95987822
2012-10-07 18:24:51,381 - DEBUG - Taking top 8 variants by coverage in window 9:95993953-95993954
2012-10-07 18:24:51,474 - DEBUG - Taking top 8 variants by coverage in window 9:95994054-95994055
2012-10-07 18:24:53,223 - DEBUG - Read 98331 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 18:24:53,480 - DEBUG - Read 106221 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 18:24:53,781 - DEBUG - Read 122655 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 18:24:54,093 - DEBUG - Read 126201 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 18:24:54,382 - DEBUG - Read 116814 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 18:24:54,640 - DEBUG - Read 110700 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 18:24:54,911 - DEBUG - Read 118637 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 18:24:55,186 - DEBUG - Read 107793 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 18:24:55,442 - DEBUG - Read 101600 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 18:24:55,693 - DEBUG - Read 100485 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 18:24:55,968 - DEBUG - Read 114302 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 18:24:56,209 - DEBUG - Read 102295 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 18:24:56,455 - DEBUG - Read 103600 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 18:24:56,712 - DEBUG - Read 115343 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 18:24:56,998 - DEBUG - Read 124944 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 18:24:57,235 - DEBUG - Read 94149 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 18:24:57,505 - DEBUG - Read 119195 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 18:24:57,783 - DEBUG - Read 114157 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 18:24:58,084 - DEBUG - Read 99524 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 18:24:58,334 - DEBUG - Read 99095 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 18:24:58,461 - DEBUG - Detected 23617 variants in 98331 reads
2012-10-07 18:24:58,650 - DEBUG - Detected 33503 variants in 106221 reads
2012-10-07 18:24:58,896 - DEBUG - Detected 41985 variants in 122655 reads
2012-10-07 18:24:59,179 - DEBUG - Detected 55286 variants in 126201 reads
2012-10-07 18:24:59,510 - DEBUG - Detected 62296 variants in 116814 reads
2012-10-07 18:24:59,872 - DEBUG - Detected 68630 variants in 110700 reads
2012-10-07 18:25:00,312 - DEBUG - Detected 82887 variants in 118637 reads
2012-10-07 18:25:00,783 - DEBUG - Detected 88531 variants in 107793 reads
2012-10-07 18:25:01,267 - DEBUG - Detected 95181 variants in 101600 reads
2012-10-07 18:25:01,794 - DEBUG - Detected 100554 variants in 100485 reads
2012-10-07 18:25:02,345 - DEBUG - Detected 106125 variants in 114302 reads
2012-10-07 18:25:02,911 - DEBUG - Detected 110060 variants in 102295 reads
2012-10-07 18:25:03,542 - DEBUG - Detected 114325 variants in 103600 reads
2012-10-07 18:25:04,165 - DEBUG - Detected 119198 variants in 115343 reads
2012-10-07 18:25:04,861 - DEBUG - Detected 126620 variants in 124944 reads
2012-10-07 18:25:05,569 - DEBUG - Detected 130558 variants in 94149 reads
2012-10-07 18:25:06,383 - DEBUG - Detected 134760 variants in 119195 reads
2012-10-07 18:25:07,157 - DEBUG - Detected 138978 variants in 114157 reads
2012-10-07 18:25:07,932 - DEBUG - Detected 143330 variants in 99524 reads
2012-10-07 18:25:08,693 - DEBUG - Detected 148248 variants in 99095 reads
2012-10-07 18:25:10,140 - DEBUG - Taking top 8 variants by coverage in window 9:96005311-96005312
2012-10-07 18:25:10,248 - DEBUG - Taking top 8 variants by coverage in window 9:96011778-96011779
2012-10-07 18:25:10,478 - DEBUG - Taking top 8 variants by coverage in window 9:96014077-96014078
2012-10-07 18:25:10,576 - DEBUG - Taking top 8 variants by coverage in window 9:96015824-96015825
2012-10-07 18:25:10,713 - DEBUG - Taking top 8 variants by coverage in window 9:96018355-96018381
2012-10-07 18:25:10,933 - DEBUG - Taking top 8 variants by coverage in window 9:96020276-96020280
2012-10-07 18:25:11,102 - DEBUG - Taking top 8 variants by coverage in window 9:96021344-96021345
2012-10-07 18:25:11,906 - DEBUG - Taking top 8 variants by coverage in window 9:96027243-96027246
2012-10-07 18:25:11,926 - DEBUG - Taking top 8 variants by coverage in window 9:96027312-96027313
2012-10-07 18:25:12,183 - DEBUG - Taking top 8 variants by coverage in window 9:96029414-96029416
2012-10-07 18:25:12,236 - DEBUG - Taking top 8 variants by coverage in window 9:96029527-96029530
2012-10-07 18:25:12,546 - DEBUG - Taking top 8 variants by coverage in window 9:96032994-96032995
2012-10-07 18:25:12,658 - DEBUG - Taking top 8 variants by coverage in window 9:96033882-96033883
2012-10-07 18:25:12,957 - DEBUG - Taking top 8 variants by coverage in window 9:96037532-96037533
2012-10-07 18:25:13,045 - DEBUG - Taking top 8 variants by coverage in window 9:96038162-96038163
2012-10-07 18:25:13,453 - DEBUG - Taking top 8 variants by coverage in window 9:96042401-96042406
2012-10-07 18:25:13,582 - DEBUG - Taking top 8 variants by coverage in window 9:96044449-96044450
2012-10-07 18:25:13,713 - DEBUG - Taking top 8 variants by coverage in window 9:96044515-96044516
2012-10-07 18:25:15,432 - DEBUG - Taking top 8 variants by coverage in window 9:96065091-96065093
2012-10-07 18:25:15,913 - DEBUG - Taking top 8 variants by coverage in window 9:96070474-96070476
2012-10-07 18:25:15,977 - DEBUG - Taking top 8 variants by coverage in window 9:96070592-96070593
2012-10-07 18:25:16,123 - DEBUG - Taking top 8 variants by coverage in window 9:96071404-96071405
2012-10-07 18:25:16,858 - DEBUG - Taking top 8 variants by coverage in window 9:96078851-96078852
2012-10-07 18:25:16,880 - DEBUG - Taking top 8 variants by coverage in window 9:96078971-96078975
2012-10-07 18:25:17,729 - DEBUG - Taking top 8 variants by coverage in window 9:96089022-96089023
2012-10-07 18:25:18,739 - DEBUG - Taking top 8 variants by coverage in window 9:96102970-96102971
2012-10-07 18:25:19,398 - DEBUG - Taking top 8 variants by coverage in window 9:96109247-96109249
2012-10-07 18:25:19,467 - DEBUG - Taking top 8 variants by coverage in window 9:96109767-96109769
2012-10-07 18:25:19,536 - DEBUG - Taking top 8 variants by coverage in window 9:96111582-96111588
2012-10-07 18:25:20,317 - DEBUG - Taking top 8 variants by coverage in window 9:96119202-96119203
2012-10-07 18:25:21,673 - DEBUG - Taking top 8 variants by coverage in window 9:96142936-96142937
2012-10-07 18:25:22,058 - DEBUG - Taking top 8 variants by coverage in window 9:96148807-96148808
2012-10-07 18:25:22,284 - DEBUG - Taking top 8 variants by coverage in window 9:96151205-96151206
2012-10-07 18:25:22,296 - DEBUG - Taking top 8 variants by coverage in window 9:96151215-96151216
2012-10-07 18:25:22,475 - DEBUG - Taking top 8 variants by coverage in window 9:96153121-96153122
2012-10-07 18:25:22,664 - DEBUG - Taking top 8 variants by coverage in window 9:96153898-96153900
2012-10-07 18:25:22,738 - DEBUG - Taking top 8 variants by coverage in window 9:96153914-96153933
2012-10-07 18:25:23,164 - DEBUG - Taking top 8 variants by coverage in window 9:96163678-96163683
2012-10-07 18:25:23,176 - DEBUG - Taking top 8 variants by coverage in window 9:96163684-96163686
2012-10-07 18:25:23,296 - DEBUG - Taking top 8 variants by coverage in window 9:96165235-96165242
2012-10-07 18:25:23,635 - DEBUG - Taking top 8 variants by coverage in window 9:96169259-96169265
2012-10-07 18:25:23,874 - DEBUG - Taking top 8 variants by coverage in window 9:96169357-96169365
2012-10-07 18:25:24,046 - DEBUG - Taking top 8 variants by coverage in window 9:96169386-96169396
2012-10-07 18:25:24,752 - DEBUG - Taking top 8 variants by coverage in window 9:96174208-96174209
2012-10-07 18:25:25,142 - DEBUG - Taking top 8 variants by coverage in window 9:96180449-96180450
2012-10-07 18:25:25,864 - DEBUG - Taking top 8 variants by coverage in window 9:96192212-96192221
2012-10-07 18:25:25,984 - DEBUG - Taking top 8 variants by coverage in window 9:96192608-96192609
2012-10-07 18:25:26,001 - DEBUG - Taking top 8 variants by coverage in window 9:96192619-96192621
2012-10-07 18:25:26,023 - DEBUG - Taking top 8 variants by coverage in window 9:96192622-96192623
2012-10-07 18:25:26,262 - DEBUG - Taking top 8 variants by coverage in window 9:96194663-96194664
2012-10-07 18:25:27,449 - DEBUG - Taking top 8 variants by coverage in window 9:96212236-96212241
2012-10-07 18:25:27,785 - DEBUG - Taking top 8 variants by coverage in window 9:96215730-96215736
2012-10-07 18:25:27,875 - DEBUG - Taking top 8 variants by coverage in window 9:96216425-96216426
2012-10-07 18:25:29,024 - DEBUG - Taking top 8 variants by coverage in window 9:96227825-96227826
2012-10-07 18:25:29,038 - DEBUG - Taking top 8 variants by coverage in window 9:96227826-96227827
2012-10-07 18:25:29,090 - DEBUG - Taking top 8 variants by coverage in window 9:96227839-96227840
2012-10-07 18:25:29,110 - DEBUG - Taking top 8 variants by coverage in window 9:96227852-96227853
2012-10-07 18:25:29,517 - DEBUG - Taking top 8 variants by coverage in window 9:96232412-96232417
2012-10-07 18:25:29,582 - DEBUG - Taking top 8 variants by coverage in window 9:96232868-96232881
2012-10-07 18:25:30,223 - DEBUG - Taking top 8 variants by coverage in window 9:96239645-96239647
2012-10-07 18:25:30,251 - DEBUG - Taking top 8 variants by coverage in window 9:96239697-96239698
2012-10-07 18:25:30,830 - DEBUG - Taking top 8 variants by coverage in window 9:96249509-96249512
2012-10-07 18:25:31,264 - DEBUG - Taking top 8 variants by coverage in window 9:96255605-96255609
2012-10-07 18:25:31,960 - DEBUG - Taking top 8 variants by coverage in window 9:96268041-96268042
2012-10-07 18:25:31,996 - DEBUG - Taking top 8 variants by coverage in window 9:96268248-96268249
2012-10-07 18:25:32,197 - DEBUG - Taking top 8 variants by coverage in window 9:96270941-96270942
2012-10-07 18:25:32,299 - DEBUG - Taking top 8 variants by coverage in window 9:96271856-96271858
2012-10-07 18:25:32,417 - DEBUG - Taking top 8 variants by coverage in window 9:96272864-96272865
2012-10-07 18:25:32,711 - DEBUG - Taking top 8 variants by coverage in window 9:96275046-96275047
2012-10-07 18:25:32,978 - DEBUG - Taking top 8 variants by coverage in window 9:96278306-96278307
2012-10-07 18:25:33,060 - DEBUG - Taking top 8 variants by coverage in window 9:96278973-96278974
2012-10-07 18:25:33,597 - DEBUG - Taking top 8 variants by coverage in window 9:96284706-96284708
2012-10-07 18:25:33,627 - DEBUG - Taking top 8 variants by coverage in window 9:96284710-96284711
2012-10-07 18:25:33,749 - DEBUG - Taking top 8 variants by coverage in window 9:96285544-96285545
2012-10-07 18:25:33,848 - DEBUG - Taking top 8 variants by coverage in window 9:96285627-96285628
2012-10-07 18:25:33,857 - DEBUG - Taking top 8 variants by coverage in window 9:96285628-96285629
2012-10-07 18:25:34,545 - DEBUG - Taking top 8 variants by coverage in window 9:96291768-96291770
2012-10-07 18:25:34,698 - DEBUG - Taking top 8 variants by coverage in window 9:96294413-96294414
2012-10-07 18:25:34,706 - DEBUG - Taking top 8 variants by coverage in window 9:96294414-96294415
2012-10-07 18:25:35,015 - DEBUG - Taking top 8 variants by coverage in window 9:96298253-96298254
2012-10-07 18:25:35,064 - DEBUG - Taking top 8 variants by coverage in window 9:96299156-96299157
2012-10-07 18:25:35,077 - DEBUG - Taking top 8 variants by coverage in window 9:96299168-96299169
2012-10-07 18:25:35,404 - DEBUG - Taking top 8 variants by coverage in window 9:96303401-96303407
2012-10-07 18:25:35,648 - DEBUG - Taking top 8 variants by coverage in window 9:96305706-96305707
2012-10-07 18:25:36,368 - DEBUG - Taking top 8 variants by coverage in window 9:96312475-96312476
2012-10-07 18:25:36,646 - DEBUG - Taking top 8 variants by coverage in window 9:96314259-96314260
2012-10-07 18:25:36,668 - DEBUG - Taking top 8 variants by coverage in window 9:96314316-96314317
2012-10-07 18:25:36,847 - DEBUG - Taking top 8 variants by coverage in window 9:96316105-96316106
2012-10-07 18:25:37,087 - DEBUG - Taking top 8 variants by coverage in window 9:96318816-96318821
2012-10-07 18:25:37,115 - DEBUG - Taking top 8 variants by coverage in window 9:96318826-96318827
2012-10-07 18:25:37,551 - DEBUG - Taking top 8 variants by coverage in window 9:96321995-96321996
2012-10-07 18:25:38,232 - DEBUG - Taking top 8 variants by coverage in window 9:96331827-96331828
2012-10-07 18:25:39,075 - DEBUG - Taking top 8 variants by coverage in window 9:96340642-96340644
2012-10-07 18:25:39,354 - DEBUG - Taking top 8 variants by coverage in window 9:96344328-96344329
2012-10-07 18:25:39,564 - DEBUG - Taking top 8 variants by coverage in window 9:96344828-96344829
2012-10-07 18:25:40,249 - DEBUG - Taking top 8 variants by coverage in window 9:96350879-96350881
2012-10-07 18:25:40,615 - DEBUG - Taking top 8 variants by coverage in window 9:96352611-96352612
2012-10-07 18:25:40,798 - DEBUG - Taking top 8 variants by coverage in window 9:96353989-96353990
2012-10-07 18:25:40,829 - DEBUG - Taking top 8 variants by coverage in window 9:96354165-96354166
2012-10-07 18:25:41,266 - DEBUG - Taking top 8 variants by coverage in window 9:96357583-96357589
2012-10-07 18:25:41,287 - DEBUG - Taking top 8 variants by coverage in window 9:96357590-96357591
2012-10-07 18:25:41,332 - DEBUG - Taking top 8 variants by coverage in window 9:96357602-96357604
2012-10-07 18:25:41,844 - DEBUG - Taking top 8 variants by coverage in window 9:96363523-96363524
2012-10-07 18:25:41,883 - DEBUG - Taking top 8 variants by coverage in window 9:96363576-96363577
2012-10-07 18:25:42,252 - DEBUG - Taking top 8 variants by coverage in window 9:96366743-96366744
2012-10-07 18:25:42,592 - DEBUG - Taking top 8 variants by coverage in window 9:96370899-96370900
2012-10-07 18:25:42,623 - DEBUG - Taking top 8 variants by coverage in window 9:96370935-96370936
2012-10-07 18:25:42,786 - DEBUG - Taking top 8 variants by coverage in window 9:96373371-96373372
2012-10-07 18:25:43,096 - DEBUG - Taking top 8 variants by coverage in window 9:96376431-96376432
2012-10-07 18:25:44,046 - DEBUG - Taking top 8 variants by coverage in window 9:96386321-96386322
2012-10-07 18:25:44,283 - DEBUG - Taking top 8 variants by coverage in window 9:96389107-96389116
2012-10-07 18:25:44,412 - DEBUG - Taking top 8 variants by coverage in window 9:96389911-96389912
2012-10-07 18:25:44,563 - DEBUG - Taking top 8 variants by coverage in window 9:96391043-96391044
2012-10-07 18:25:45,392 - DEBUG - Taking top 8 variants by coverage in window 9:96401614-96401615
2012-10-07 18:25:45,545 - DEBUG - Taking top 8 variants by coverage in window 9:96402520-96402521
2012-10-07 18:25:45,995 - DEBUG - Taking top 8 variants by coverage in window 9:96407691-96407692
2012-10-07 18:25:46,059 - DEBUG - Taking top 8 variants by coverage in window 9:96407703-96407704
2012-10-07 18:25:46,119 - DEBUG - Taking top 8 variants by coverage in window 9:96408027-96408038
2012-10-07 18:25:46,628 - DEBUG - Taking top 8 variants by coverage in window 9:96409943-96409944
2012-10-07 18:25:46,685 - DEBUG - Taking top 8 variants by coverage in window 9:96410317-96410318
2012-10-07 18:25:46,871 - DEBUG - Taking top 8 variants by coverage in window 9:96411207-96411208
2012-10-07 18:25:46,890 - DEBUG - Taking top 8 variants by coverage in window 9:96411407-96411408
2012-10-07 18:25:47,356 - DEBUG - Taking top 8 variants by coverage in window 9:96415744-96415745
2012-10-07 18:25:47,550 - DEBUG - Taking top 8 variants by coverage in window 9:96417239-96417251
2012-10-07 18:25:47,691 - DEBUG - Taking top 8 variants by coverage in window 9:96417272-96417282
2012-10-07 18:25:47,775 - DEBUG - Taking top 8 variants by coverage in window 9:96417296-96417308
2012-10-07 18:25:48,548 - DEBUG - Taking top 8 variants by coverage in window 9:96419699-96419700
2012-10-07 18:25:48,856 - DEBUG - Taking top 8 variants by coverage in window 9:96423129-96423130
2012-10-07 18:25:49,007 - DEBUG - Taking top 8 variants by coverage in window 9:96425223-96425224
2012-10-07 18:25:49,148 - DEBUG - Taking top 8 variants by coverage in window 9:96426321-96426329
2012-10-07 18:25:50,190 - DEBUG - Taking top 8 variants by coverage in window 9:96432856-96432857
2012-10-07 18:25:50,393 - DEBUG - Taking top 8 variants by coverage in window 9:96435116-96435117
2012-10-07 18:25:50,969 - DEBUG - Taking top 8 variants by coverage in window 9:96440580-96440586
2012-10-07 18:25:51,576 - DEBUG - Taking top 8 variants by coverage in window 9:96447751-96447752
2012-10-07 18:25:51,809 - DEBUG - Taking top 8 variants by coverage in window 9:96448192-96448193
2012-10-07 18:25:51,847 - DEBUG - Taking top 8 variants by coverage in window 9:96448246-96448247
2012-10-07 18:25:53,034 - DEBUG - Taking top 8 variants by coverage in window 9:96462830-96462831
2012-10-07 18:25:53,938 - DEBUG - Taking top 8 variants by coverage in window 9:96479498-96479499
2012-10-07 18:25:54,198 - DEBUG - Taking top 8 variants by coverage in window 9:96483092-96483093
2012-10-07 18:25:54,455 - DEBUG - Taking top 8 variants by coverage in window 9:96486933-96486934
2012-10-07 18:25:54,475 - DEBUG - Taking top 8 variants by coverage in window 9:96486953-96486954
2012-10-07 18:25:54,692 - DEBUG - Taking top 8 variants by coverage in window 9:96490190-96490191
2012-10-07 18:25:54,743 - DEBUG - Taking top 8 variants by coverage in window 9:96490835-96490836
2012-10-07 18:25:55,124 - DEBUG - Taking top 8 variants by coverage in window 9:96498016-96498020
2012-10-07 18:25:55,226 - DEBUG - Taking top 8 variants by coverage in window 9:96498386-96498387
2012-10-07 18:25:55,253 - DEBUG - Taking top 8 variants by coverage in window 9:96498397-96498398
2012-10-07 18:25:55,932 - DEBUG - Taking top 8 variants by coverage in window 9:96508210-96508212
2012-10-07 18:25:55,943 - DEBUG - Taking top 8 variants by coverage in window 9:96508213-96508215
2012-10-07 18:25:55,967 - DEBUG - Taking top 8 variants by coverage in window 9:96508220-96508221
2012-10-07 18:25:56,560 - DEBUG - Taking top 8 variants by coverage in window 9:96517591-96517594
2012-10-07 18:25:56,586 - DEBUG - Taking top 8 variants by coverage in window 9:96518086-96518087
2012-10-07 18:25:56,863 - DEBUG - Taking top 8 variants by coverage in window 9:96522070-96522071
2012-10-07 18:25:56,918 - DEBUG - Taking top 8 variants by coverage in window 9:96522193-96522194
2012-10-07 18:25:57,539 - DEBUG - Taking top 8 variants by coverage in window 9:96526191-96526192
2012-10-07 18:25:57,640 - DEBUG - Taking top 8 variants by coverage in window 9:96526474-96526488
2012-10-07 18:25:57,825 - DEBUG - Taking top 8 variants by coverage in window 9:96528968-96528969
2012-10-07 18:25:57,856 - DEBUG - Taking top 8 variants by coverage in window 9:96529099-96529100
2012-10-07 18:25:58,042 - DEBUG - Taking top 8 variants by coverage in window 9:96533930-96533931
2012-10-07 18:25:58,220 - DEBUG - Taking top 8 variants by coverage in window 9:96535504-96535505
2012-10-07 18:25:59,170 - DEBUG - Taking top 8 variants by coverage in window 9:96548377-96548378
2012-10-07 18:26:00,086 - DEBUG - Taking top 8 variants by coverage in window 9:96564911-96564918
2012-10-07 18:26:00,157 - DEBUG - Taking top 8 variants by coverage in window 9:96568441-96568442
2012-10-07 18:26:00,273 - DEBUG - Taking top 8 variants by coverage in window 9:96570019-96570020
2012-10-07 18:26:00,515 - DEBUG - Taking top 8 variants by coverage in window 9:96572250-96572252
2012-10-07 18:26:00,673 - DEBUG - Taking top 8 variants by coverage in window 9:96572842-96572843
2012-10-07 18:26:00,778 - DEBUG - Taking top 8 variants by coverage in window 9:96573289-96573290
2012-10-07 18:26:01,382 - DEBUG - Taking top 8 variants by coverage in window 9:96580295-96580296
2012-10-07 18:26:01,474 - DEBUG - Taking top 8 variants by coverage in window 9:96580758-96580763
2012-10-07 18:26:02,085 - DEBUG - Taking top 8 variants by coverage in window 9:96594176-96594177
2012-10-07 18:26:02,225 - DEBUG - Taking top 8 variants by coverage in window 9:96595250-96595255
2012-10-07 18:26:02,405 - DEBUG - Taking top 8 variants by coverage in window 9:96597943-96597944
2012-10-07 18:26:02,414 - DEBUG - Taking top 8 variants by coverage in window 9:96597945-96597946
2012-10-07 18:26:03,334 - DEBUG - Taking top 8 variants by coverage in window 9:96615083-96615084
2012-10-07 18:26:03,357 - DEBUG - Taking top 8 variants by coverage in window 9:96615138-96615147
2012-10-07 18:26:03,387 - DEBUG - Taking top 8 variants by coverage in window 9:96615225-96615228
2012-10-07 18:26:03,425 - DEBUG - Taking top 8 variants by coverage in window 9:96615253-96615261
2012-10-07 18:26:03,578 - DEBUG - Taking top 8 variants by coverage in window 9:96616648-96616649
2012-10-07 18:26:03,624 - DEBUG - Taking top 8 variants by coverage in window 9:96616683-96616684
2012-10-07 18:26:03,643 - DEBUG - Taking top 8 variants by coverage in window 9:96616691-96616692
2012-10-07 18:26:03,655 - DEBUG - Taking top 8 variants by coverage in window 9:96616693-96616694
2012-10-07 18:26:03,768 - DEBUG - Taking top 8 variants by coverage in window 9:96620762-96620764
2012-10-07 18:26:03,882 - DEBUG - Taking top 8 variants by coverage in window 9:96623184-96623185
2012-10-07 18:26:04,515 - DEBUG - Taking top 8 variants by coverage in window 9:96641184-96641185
2012-10-07 18:26:04,527 - DEBUG - Taking top 8 variants by coverage in window 9:96641205-96641206
2012-10-07 18:26:04,601 - DEBUG - Taking top 8 variants by coverage in window 9:96642646-96642663
2012-10-07 18:26:05,117 - DEBUG - Taking top 8 variants by coverage in window 9:96651466-96651467
2012-10-07 18:26:05,136 - DEBUG - Taking top 8 variants by coverage in window 9:96651482-96651483
2012-10-07 18:26:05,286 - DEBUG - Taking top 8 variants by coverage in window 9:96654268-96654269
2012-10-07 18:26:06,136 - DEBUG - Taking top 8 variants by coverage in window 9:96666124-96666125
2012-10-07 18:26:06,193 - DEBUG - Taking top 8 variants by coverage in window 9:96666742-96666743
2012-10-07 18:26:06,285 - DEBUG - Taking top 8 variants by coverage in window 9:96667246-96667247
2012-10-07 18:26:06,351 - DEBUG - Taking top 8 variants by coverage in window 9:96667797-96667798
2012-10-07 18:26:06,883 - DEBUG - Taking top 8 variants by coverage in window 9:96674894-96674900
2012-10-07 18:26:07,298 - DEBUG - Taking top 8 variants by coverage in window 9:96679766-96679767
2012-10-07 18:26:07,397 - DEBUG - Taking top 8 variants by coverage in window 9:96681381-96681382
2012-10-07 18:26:07,407 - DEBUG - Taking top 8 variants by coverage in window 9:96681382-96681383
2012-10-07 18:26:07,498 - DEBUG - Taking top 8 variants by coverage in window 9:96682153-96682154
2012-10-07 18:26:07,946 - DEBUG - Taking top 8 variants by coverage in window 9:96687276-96687277
2012-10-07 18:26:07,969 - DEBUG - Taking top 8 variants by coverage in window 9:96687306-96687307
2012-10-07 18:26:08,479 - DEBUG - Taking top 8 variants by coverage in window 9:96694141-96694142
2012-10-07 18:26:09,160 - DEBUG - Taking top 8 variants by coverage in window 9:96701818-96701819
2012-10-07 18:26:09,847 - DEBUG - Taking top 8 variants by coverage in window 9:96709785-96709786
2012-10-07 18:26:09,859 - DEBUG - Taking top 8 variants by coverage in window 9:96709788-96709789
2012-10-07 18:26:09,876 - DEBUG - Taking top 8 variants by coverage in window 9:96709800-96709803
2012-10-07 18:26:10,425 - DEBUG - Taking top 8 variants by coverage in window 9:96714984-96714987
2012-10-07 18:26:10,706 - DEBUG - Taking top 8 variants by coverage in window 9:96717965-96717966
2012-10-07 18:26:10,772 - DEBUG - Taking top 8 variants by coverage in window 9:96718689-96718690
2012-10-07 18:26:11,345 - DEBUG - Taking top 8 variants by coverage in window 9:96723622-96723623
2012-10-07 18:26:11,687 - DEBUG - Taking top 8 variants by coverage in window 9:96730337-96730338
2012-10-07 18:26:11,768 - DEBUG - Taking top 8 variants by coverage in window 9:96731243-96731247
2012-10-07 18:26:12,053 - DEBUG - Taking top 8 variants by coverage in window 9:96734629-96734630
2012-10-07 18:26:12,278 - DEBUG - Taking top 8 variants by coverage in window 9:96735566-96735568
2012-10-07 18:26:12,307 - DEBUG - Taking top 8 variants by coverage in window 9:96735589-96735590
2012-10-07 18:26:12,363 - DEBUG - Taking top 8 variants by coverage in window 9:96736077-96736078
2012-10-07 18:26:13,044 - DEBUG - Taking top 8 variants by coverage in window 9:96744970-96744971
2012-10-07 18:26:13,327 - DEBUG - Taking top 8 variants by coverage in window 9:96750639-96750640
2012-10-07 18:26:13,419 - DEBUG - Taking top 8 variants by coverage in window 9:96751308-96751309
2012-10-07 18:26:13,576 - DEBUG - Taking top 8 variants by coverage in window 9:96752814-96752820
2012-10-07 18:26:14,042 - DEBUG - Taking top 8 variants by coverage in window 9:96753437-96753441
2012-10-07 18:26:14,295 - DEBUG - Taking top 8 variants by coverage in window 9:96753461-96753463
2012-10-07 18:26:14,539 - DEBUG - Taking top 8 variants by coverage in window 9:96753480-96753483
2012-10-07 18:26:14,692 - DEBUG - Taking top 8 variants by coverage in window 9:96753485-96753486
2012-10-07 18:26:15,418 - DEBUG - Taking top 8 variants by coverage in window 9:96753528-96753529
2012-10-07 18:26:15,759 - DEBUG - Taking top 8 variants by coverage in window 9:96753556-96753559
2012-10-07 18:26:15,934 - DEBUG - Taking top 8 variants by coverage in window 9:96753565-96753569
2012-10-07 18:26:16,441 - DEBUG - Taking top 8 variants by coverage in window 9:96755493-96755501
2012-10-07 18:26:16,592 - DEBUG - Taking top 8 variants by coverage in window 9:96755522-96755523
2012-10-07 18:26:16,689 - DEBUG - Taking top 8 variants by coverage in window 9:96755549-96755554
2012-10-07 18:26:16,937 - DEBUG - Taking top 8 variants by coverage in window 9:96757507-96757508
2012-10-07 18:26:17,162 - DEBUG - Taking top 8 variants by coverage in window 9:96759353-96759354
2012-10-07 18:26:17,272 - DEBUG - Taking top 8 variants by coverage in window 9:96760496-96760497
2012-10-07 18:26:17,415 - DEBUG - Taking top 8 variants by coverage in window 9:96761462-96761463
2012-10-07 18:26:17,648 - DEBUG - Taking top 8 variants by coverage in window 9:96763679-96763680
2012-10-07 18:26:17,682 - DEBUG - Taking top 8 variants by coverage in window 9:96763733-96763734
2012-10-07 18:26:17,779 - DEBUG - Taking top 8 variants by coverage in window 9:96764175-96764176
2012-10-07 18:26:18,615 - DEBUG - Taking top 8 variants by coverage in window 9:96774372-96774373
2012-10-07 18:26:18,695 - DEBUG - Taking top 8 variants by coverage in window 9:96775014-96775027
2012-10-07 18:26:18,814 - DEBUG - Taking top 8 variants by coverage in window 9:96775403-96775409
2012-10-07 18:26:18,925 - DEBUG - Taking top 8 variants by coverage in window 9:96775666-96775667
2012-10-07 18:26:19,171 - DEBUG - Taking top 8 variants by coverage in window 9:96780177-96780178
2012-10-07 18:26:19,635 - DEBUG - Taking top 8 variants by coverage in window 9:96784605-96784606
2012-10-07 18:26:20,018 - DEBUG - Taking top 8 variants by coverage in window 9:96792302-96792304
2012-10-07 18:26:20,382 - DEBUG - Taking top 8 variants by coverage in window 9:96796031-96796032
2012-10-07 18:26:20,479 - DEBUG - Taking top 8 variants by coverage in window 9:96796787-96796788
2012-10-07 18:26:20,847 - DEBUG - Taking top 8 variants by coverage in window 9:96804312-96804313
2012-10-07 18:26:21,258 - DEBUG - Taking top 8 variants by coverage in window 9:96811693-96811694
2012-10-07 18:26:21,467 - DEBUG - Taking top 8 variants by coverage in window 9:96814642-96814643
2012-10-07 18:26:21,767 - DEBUG - Taking top 8 variants by coverage in window 9:96818193-96818194
2012-10-07 18:26:21,939 - DEBUG - Taking top 8 variants by coverage in window 9:96820860-96820861
2012-10-07 18:26:21,974 - DEBUG - Taking top 8 variants by coverage in window 9:96820862-96820863
2012-10-07 18:26:22,209 - DEBUG - Taking top 8 variants by coverage in window 9:96824900-96824901
2012-10-07 18:26:22,354 - DEBUG - Taking top 8 variants by coverage in window 9:96826371-96826372
2012-10-07 18:26:23,601 - DEBUG - Taking top 8 variants by coverage in window 9:96843810-96843811
2012-10-07 18:26:24,071 - DEBUG - Taking top 8 variants by coverage in window 9:96850751-96850754
2012-10-07 18:26:25,043 - DEBUG - Taking top 8 variants by coverage in window 9:96865138-96865139
2012-10-07 18:26:25,499 - DEBUG - Taking top 8 variants by coverage in window 9:96869786-96869787
2012-10-07 18:26:26,101 - DEBUG - Taking top 8 variants by coverage in window 9:96877665-96877677
2012-10-07 18:26:27,624 - DEBUG - Taking top 8 variants by coverage in window 9:96893049-96893051
2012-10-07 18:26:28,482 - DEBUG - Taking top 8 variants by coverage in window 9:96897881-96897884
2012-10-07 18:26:29,451 - DEBUG - Taking top 8 variants by coverage in window 9:96902911-96902919
2012-10-07 18:26:29,476 - DEBUG - Taking top 8 variants by coverage in window 9:96902927-96902937
2012-10-07 18:26:30,013 - DEBUG - Taking top 8 variants by coverage in window 9:96902961-96902967
2012-10-07 18:26:30,050 - DEBUG - Taking top 8 variants by coverage in window 9:96902975-96902989
2012-10-07 18:26:33,961 - DEBUG - Taking top 8 variants by coverage in window 9:96902999-96903003
2012-10-07 18:26:35,872 - DEBUG - Taking top 8 variants by coverage in window 9:96916113-96916115
2012-10-07 18:26:36,527 - DEBUG - Taking top 8 variants by coverage in window 9:96926480-96926481
2012-10-07 18:26:36,930 - DEBUG - Taking top 8 variants by coverage in window 9:96929978-96929979
2012-10-07 18:26:36,957 - DEBUG - Taking top 8 variants by coverage in window 9:96929997-96929998
2012-10-07 18:26:37,562 - DEBUG - Taking top 8 variants by coverage in window 9:96935101-96935104
2012-10-07 18:26:37,693 - DEBUG - Taking top 8 variants by coverage in window 9:96935627-96935630
2012-10-07 18:26:38,261 - DEBUG - Taking top 8 variants by coverage in window 9:96941323-96941324
2012-10-07 18:26:38,695 - DEBUG - Taking top 8 variants by coverage in window 9:96947334-96947341
2012-10-07 18:26:39,162 - DEBUG - Taking top 8 variants by coverage in window 9:96950425-96950426
2012-10-07 18:26:39,471 - DEBUG - Taking top 8 variants by coverage in window 9:96954555-96954556
2012-10-07 18:26:39,719 - DEBUG - Taking top 8 variants by coverage in window 9:96957600-96957604
2012-10-07 18:26:39,746 - DEBUG - Taking top 8 variants by coverage in window 9:96957611-96957612
2012-10-07 18:26:39,775 - DEBUG - Taking top 8 variants by coverage in window 9:96957618-96957619
2012-10-07 18:26:40,481 - DEBUG - Taking top 8 variants by coverage in window 9:96964463-96964464
2012-10-07 18:26:43,206 - DEBUG - Read 101009 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 18:26:43,474 - DEBUG - Read 109809 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 18:26:43,869 - DEBUG - Read 126389 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 18:26:44,263 - DEBUG - Read 126962 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 18:26:44,628 - DEBUG - Read 121231 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 18:26:44,999 - DEBUG - Read 115887 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 18:26:45,377 - DEBUG - Read 121239 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 18:26:45,710 - DEBUG - Read 110434 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 18:26:46,053 - DEBUG - Read 105664 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 18:26:46,364 - DEBUG - Read 106808 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 18:26:46,680 - DEBUG - Read 117248 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 18:26:46,997 - DEBUG - Read 107020 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 18:26:47,314 - DEBUG - Read 109857 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 18:26:47,659 - DEBUG - Read 117043 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 18:26:48,121 - DEBUG - Read 128418 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 18:26:48,582 - DEBUG - Read 99836 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 18:26:49,044 - DEBUG - Read 122570 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 18:26:49,582 - DEBUG - Read 118132 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 18:26:49,954 - DEBUG - Read 101535 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 18:26:50,384 - DEBUG - Read 101676 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 18:26:50,500 - DEBUG - Detected 22474 variants in 101009 reads
2012-10-07 18:26:50,669 - DEBUG - Detected 32456 variants in 109809 reads
2012-10-07 18:26:50,896 - DEBUG - Detected 40716 variants in 126389 reads
2012-10-07 18:26:51,188 - DEBUG - Detected 49188 variants in 126962 reads
2012-10-07 18:26:51,485 - DEBUG - Detected 55554 variants in 121231 reads
2012-10-07 18:26:51,796 - DEBUG - Detected 62159 variants in 115887 reads
2012-10-07 18:26:52,161 - DEBUG - Detected 75293 variants in 121239 reads
2012-10-07 18:26:52,576 - DEBUG - Detected 80703 variants in 110434 reads
2012-10-07 18:26:53,008 - DEBUG - Detected 86421 variants in 105664 reads
2012-10-07 18:26:53,474 - DEBUG - Detected 91556 variants in 106808 reads
2012-10-07 18:26:54,006 - DEBUG - Detected 96231 variants in 117248 reads
2012-10-07 18:26:54,500 - DEBUG - Detected 100070 variants in 107020 reads
2012-10-07 18:26:55,012 - DEBUG - Detected 104157 variants in 109857 reads
2012-10-07 18:26:55,561 - DEBUG - Detected 108492 variants in 117043 reads
2012-10-07 18:26:56,165 - DEBUG - Detected 115904 variants in 128418 reads
2012-10-07 18:26:56,773 - DEBUG - Detected 119835 variants in 99836 reads
2012-10-07 18:26:57,489 - DEBUG - Detected 123636 variants in 122570 reads
2012-10-07 18:26:58,155 - DEBUG - Detected 128177 variants in 118132 reads
2012-10-07 18:26:58,827 - DEBUG - Detected 132519 variants in 101535 reads
2012-10-07 18:26:59,525 - DEBUG - Detected 136885 variants in 101676 reads
2012-10-07 18:27:00,813 - DEBUG - Taking top 8 variants by coverage in window 9:97006921-97006922
2012-10-07 18:27:01,431 - DEBUG - Taking top 8 variants by coverage in window 9:97016867-97016868
2012-10-07 18:27:02,239 - DEBUG - Taking top 8 variants by coverage in window 9:97026344-97026346
2012-10-07 18:27:02,396 - DEBUG - Taking top 8 variants by coverage in window 9:97027139-97027140
2012-10-07 18:27:02,476 - DEBUG - Taking top 8 variants by coverage in window 9:97027636-97027637
2012-10-07 18:27:02,526 - DEBUG - Taking top 8 variants by coverage in window 9:97027745-97027746
2012-10-07 18:27:03,174 - DEBUG - Taking top 8 variants by coverage in window 9:97033185-97033188
2012-10-07 18:27:03,799 - DEBUG - Taking top 8 variants by coverage in window 9:97038892-97038903
2012-10-07 18:27:04,228 - DEBUG - Taking top 8 variants by coverage in window 9:97043258-97043259
2012-10-07 18:27:04,505 - DEBUG - Taking top 8 variants by coverage in window 9:97044821-97044822
2012-10-07 18:27:04,660 - DEBUG - Taking top 8 variants by coverage in window 9:97046054-97046055
2012-10-07 18:27:05,048 - DEBUG - Taking top 8 variants by coverage in window 9:97050027-97050040
2012-10-07 18:27:05,333 - DEBUG - Taking top 8 variants by coverage in window 9:97051228-97051239
2012-10-07 18:27:06,035 - DEBUG - Taking top 8 variants by coverage in window 9:97054879-97054887
2012-10-07 18:27:07,007 - DEBUG - Taking top 8 variants by coverage in window 9:97062205-97062206
2012-10-07 18:27:07,387 - DEBUG - Taking top 8 variants by coverage in window 9:97065638-97065639
2012-10-07 18:27:07,910 - DEBUG - Taking top 8 variants by coverage in window 9:97071164-97071169
2012-10-07 18:27:08,469 - DEBUG - Taking top 8 variants by coverage in window 9:97077223-97077233
2012-10-07 18:27:08,691 - DEBUG - Taking top 8 variants by coverage in window 9:97078960-97078961
2012-10-07 18:27:10,006 - DEBUG - Taking top 8 variants by coverage in window 9:97094331-97094332
2012-10-07 18:27:10,074 - DEBUG - Taking top 8 variants by coverage in window 9:97095676-97095677
2012-10-07 18:27:10,197 - DEBUG - Taking top 8 variants by coverage in window 9:97097585-97097586
2012-10-07 18:27:10,845 - DEBUG - Taking top 8 variants by coverage in window 9:97107069-97107070
2012-10-07 18:27:10,855 - DEBUG - Taking top 8 variants by coverage in window 9:97107080-97107081
2012-10-07 18:27:10,909 - DEBUG - Taking top 8 variants by coverage in window 9:97107981-97107988
2012-10-07 18:27:11,363 - DEBUG - Taking top 8 variants by coverage in window 9:97112692-97112693
2012-10-07 18:27:11,414 - DEBUG - Taking top 8 variants by coverage in window 9:97113258-97113259
2012-10-07 18:27:11,992 - DEBUG - Taking top 8 variants by coverage in window 9:97124782-97124783
2012-10-07 18:27:12,007 - DEBUG - Taking top 8 variants by coverage in window 9:97124784-97124785
2012-10-07 18:27:12,023 - DEBUG - Taking top 8 variants by coverage in window 9:97124809-97124810
2012-10-07 18:27:12,370 - DEBUG - Taking top 8 variants by coverage in window 9:97129606-97129607
2012-10-07 18:27:12,439 - DEBUG - Taking top 8 variants by coverage in window 9:97129746-97129747
2012-10-07 18:27:12,710 - DEBUG - Taking top 8 variants by coverage in window 9:97131532-97131533
2012-10-07 18:27:12,773 - DEBUG - Taking top 8 variants by coverage in window 9:97132199-97132200
2012-10-07 18:27:14,836 - DEBUG - Taking top 8 variants by coverage in window 9:97175592-97175593
2012-10-07 18:27:14,860 - DEBUG - Taking top 8 variants by coverage in window 9:97175606-97175607
2012-10-07 18:27:14,988 - DEBUG - Taking top 8 variants by coverage in window 9:97175938-97175939
2012-10-07 18:27:15,137 - DEBUG - Taking top 8 variants by coverage in window 9:97176912-97176913
2012-10-07 18:27:15,692 - DEBUG - Taking top 8 variants by coverage in window 9:97181908-97181909
2012-10-07 18:27:16,063 - DEBUG - Taking top 8 variants by coverage in window 9:97187279-97187281
2012-10-07 18:27:16,367 - DEBUG - Taking top 8 variants by coverage in window 9:97190760-97190764
2012-10-07 18:27:16,493 - DEBUG - Taking top 8 variants by coverage in window 9:97191130-97191131
2012-10-07 18:27:16,509 - DEBUG - Taking top 8 variants by coverage in window 9:97191131-97191132
2012-10-07 18:27:17,178 - DEBUG - Taking top 8 variants by coverage in window 9:97197350-97197351
2012-10-07 18:27:17,329 - DEBUG - Taking top 8 variants by coverage in window 9:97199849-97199850
2012-10-07 18:27:17,434 - DEBUG - Taking top 8 variants by coverage in window 9:97201137-97201138
2012-10-07 18:27:17,785 - DEBUG - Taking top 8 variants by coverage in window 9:97204213-97204214
2012-10-07 18:27:17,815 - DEBUG - Taking top 8 variants by coverage in window 9:97204230-97204231
2012-10-07 18:27:19,205 - DEBUG - Taking top 8 variants by coverage in window 9:97218347-97218348
2012-10-07 18:27:19,262 - DEBUG - Taking top 8 variants by coverage in window 9:97218672-97218688
2012-10-07 18:27:19,483 - DEBUG - Taking top 8 variants by coverage in window 9:97220055-97220056
2012-10-07 18:27:19,716 - DEBUG - Taking top 8 variants by coverage in window 9:97223656-97223657
2012-10-07 18:27:19,833 - DEBUG - Taking top 8 variants by coverage in window 9:97224302-97224303
2012-10-07 18:27:20,044 - DEBUG - Taking top 8 variants by coverage in window 9:97226503-97226514
2012-10-07 18:27:21,789 - DEBUG - Taking top 8 variants by coverage in window 9:97251874-97251875
2012-10-07 18:27:22,111 - DEBUG - Taking top 8 variants by coverage in window 9:97256081-97256082
2012-10-07 18:27:22,679 - DEBUG - Taking top 8 variants by coverage in window 9:97262442-97262443
2012-10-07 18:27:22,798 - DEBUG - Taking top 8 variants by coverage in window 9:97262508-97262509
2012-10-07 18:27:24,292 - DEBUG - Taking top 8 variants by coverage in window 9:97283425-97283426
2012-10-07 18:27:26,258 - DEBUG - Taking top 8 variants by coverage in window 9:97307272-97307273
2012-10-07 18:27:26,821 - DEBUG - Taking top 8 variants by coverage in window 9:97311393-97311407
2012-10-07 18:27:27,317 - DEBUG - Taking top 8 variants by coverage in window 9:97315400-97315401
2012-10-07 18:27:29,217 - DEBUG - Taking top 8 variants by coverage in window 9:97319996-97319997
2012-10-07 18:27:29,745 - DEBUG - Taking top 8 variants by coverage in window 9:97320055-97320056
2012-10-07 18:27:30,284 - DEBUG - Taking top 8 variants by coverage in window 9:97320116-97320117
2012-10-07 18:27:30,791 - DEBUG - Taking top 8 variants by coverage in window 9:97320420-97320421
2012-10-07 18:27:31,244 - DEBUG - Taking top 8 variants by coverage in window 9:97323677-97323678
2012-10-07 18:27:31,383 - DEBUG - Taking top 8 variants by coverage in window 9:97324097-97324099
2012-10-07 18:27:31,767 - DEBUG - Taking top 8 variants by coverage in window 9:97326812-97326813
2012-10-07 18:27:32,622 - DEBUG - Taking top 8 variants by coverage in window 9:97333802-97333812
2012-10-07 18:27:33,995 - DEBUG - Taking top 8 variants by coverage in window 9:97342452-97342455
2012-10-07 18:27:34,977 - DEBUG - Taking top 8 variants by coverage in window 9:97354304-97354305
2012-10-07 18:27:35,063 - DEBUG - Taking top 8 variants by coverage in window 9:97355519-97355520
2012-10-07 18:27:35,278 - DEBUG - Taking top 8 variants by coverage in window 9:97358996-97358997
2012-10-07 18:27:35,319 - DEBUG - Taking top 8 variants by coverage in window 9:97359147-97359148
2012-10-07 18:27:35,567 - DEBUG - Taking top 8 variants by coverage in window 9:97362657-97362658
2012-10-07 18:27:35,707 - DEBUG - Taking top 8 variants by coverage in window 9:97364657-97364658
2012-10-07 18:27:36,085 - DEBUG - Taking top 8 variants by coverage in window 9:97368236-97368237
2012-10-07 18:27:36,807 - DEBUG - Taking top 8 variants by coverage in window 9:97377300-97377301
2012-10-07 18:27:36,813 - DEBUG - Taking top 8 variants by coverage in window 9:97377301-97377302
2012-10-07 18:27:37,386 - DEBUG - Taking top 8 variants by coverage in window 9:97386262-97386263
2012-10-07 18:27:37,505 - DEBUG - Taking top 8 variants by coverage in window 9:97388368-97388371
2012-10-07 18:27:37,893 - DEBUG - Taking top 8 variants by coverage in window 9:97388670-97388675
2012-10-07 18:27:38,402 - DEBUG - Taking top 8 variants by coverage in window 9:97391505-97391507
2012-10-07 18:27:38,477 - DEBUG - Taking top 8 variants by coverage in window 9:97391734-97391735
2012-10-07 18:27:38,832 - DEBUG - Taking top 8 variants by coverage in window 9:97395815-97395821
2012-10-07 18:27:38,853 - DEBUG - Taking top 8 variants by coverage in window 9:97395842-97395843
2012-10-07 18:27:38,915 - DEBUG - Taking top 8 variants by coverage in window 9:97396541-97396542
2012-10-07 18:27:39,042 - DEBUG - Taking top 8 variants by coverage in window 9:97398304-97398305
2012-10-07 18:27:39,153 - DEBUG - Taking top 8 variants by coverage in window 9:97399765-97399766
2012-10-07 18:27:39,963 - DEBUG - Taking top 8 variants by coverage in window 9:97408898-97408899
2012-10-07 18:27:40,255 - DEBUG - Taking top 8 variants by coverage in window 9:97414356-97414357
2012-10-07 18:27:41,658 - DEBUG - Taking top 8 variants by coverage in window 9:97432455-97432457
2012-10-07 18:27:41,679 - DEBUG - Taking top 8 variants by coverage in window 9:97432464-97432465
2012-10-07 18:27:43,326 - DEBUG - Taking top 8 variants by coverage in window 9:97451062-97451063
2012-10-07 18:27:43,343 - DEBUG - Taking top 8 variants by coverage in window 9:97451071-97451072
2012-10-07 18:27:43,478 - DEBUG - Taking top 8 variants by coverage in window 9:97451400-97451401
2012-10-07 18:27:43,718 - DEBUG - Taking top 8 variants by coverage in window 9:97452408-97452409
2012-10-07 18:27:44,693 - DEBUG - Taking top 8 variants by coverage in window 9:97464161-97464162
2012-10-07 18:27:44,724 - DEBUG - Taking top 8 variants by coverage in window 9:97464191-97464192
2012-10-07 18:27:44,807 - DEBUG - Taking top 8 variants by coverage in window 9:97464673-97464674
2012-10-07 18:27:45,260 - DEBUG - Taking top 8 variants by coverage in window 9:97469837-97469838
2012-10-07 18:27:46,520 - DEBUG - Taking top 8 variants by coverage in window 9:97487321-97487322
2012-10-07 18:27:46,701 - DEBUG - Taking top 8 variants by coverage in window 9:97488295-97488296
2012-10-07 18:27:47,617 - DEBUG - Taking top 8 variants by coverage in window 9:97504066-97504067
2012-10-07 18:27:47,695 - DEBUG - Taking top 8 variants by coverage in window 9:97505033-97505034
2012-10-07 18:27:47,715 - DEBUG - Taking top 8 variants by coverage in window 9:97505289-97505290
2012-10-07 18:27:47,815 - DEBUG - Taking top 8 variants by coverage in window 9:97506204-97506205
2012-10-07 18:27:48,331 - DEBUG - Taking top 8 variants by coverage in window 9:97511697-97511698
2012-10-07 18:27:48,344 - DEBUG - Taking top 8 variants by coverage in window 9:97511699-97511700
2012-10-07 18:27:49,056 - DEBUG - Taking top 8 variants by coverage in window 9:97521893-97521894
2012-10-07 18:27:49,069 - DEBUG - Taking top 8 variants by coverage in window 9:97521912-97521913
2012-10-07 18:27:49,983 - DEBUG - Taking top 8 variants by coverage in window 9:97535012-97535038
2012-10-07 18:27:50,084 - DEBUG - Taking top 8 variants by coverage in window 9:97536082-97536083
2012-10-07 18:27:50,612 - DEBUG - Taking top 8 variants by coverage in window 9:97542292-97542293
2012-10-07 18:27:50,939 - DEBUG - Taking top 8 variants by coverage in window 9:97544980-97544981
2012-10-07 18:27:51,106 - DEBUG - Taking top 8 variants by coverage in window 9:97546092-97546093
2012-10-07 18:27:51,131 - DEBUG - Taking top 8 variants by coverage in window 9:97546096-97546102
2012-10-07 18:27:52,209 - DEBUG - Taking top 8 variants by coverage in window 9:97547209-97547210
2012-10-07 18:27:52,492 - DEBUG - Taking top 8 variants by coverage in window 9:97550050-97550051
2012-10-07 18:27:52,737 - DEBUG - Taking top 8 variants by coverage in window 9:97552968-97552969
2012-10-07 18:27:53,776 - DEBUG - Taking top 8 variants by coverage in window 9:97568763-97568764
2012-10-07 18:27:53,787 - DEBUG - Taking top 8 variants by coverage in window 9:97568764-97568765
2012-10-07 18:27:54,001 - DEBUG - Taking top 8 variants by coverage in window 9:97570503-97570508
2012-10-07 18:27:54,955 - DEBUG - Taking top 8 variants by coverage in window 9:97584212-97584225
2012-10-07 18:27:55,995 - DEBUG - Taking top 8 variants by coverage in window 9:97596736-97596739
2012-10-07 18:27:56,516 - DEBUG - Taking top 8 variants by coverage in window 9:97600680-97600681
2012-10-07 18:27:57,689 - DEBUG - Taking top 8 variants by coverage in window 9:97616914-97616915
2012-10-07 18:27:57,878 - DEBUG - Taking top 8 variants by coverage in window 9:97619698-97619707
2012-10-07 18:27:58,020 - DEBUG - Taking top 8 variants by coverage in window 9:97621318-97621319
2012-10-07 18:27:58,061 - DEBUG - Taking top 8 variants by coverage in window 9:97621963-97621969
2012-10-07 18:27:58,586 - DEBUG - Taking top 8 variants by coverage in window 9:97634191-97634192
2012-10-07 18:27:58,768 - DEBUG - Taking top 8 variants by coverage in window 9:97636374-97636381
2012-10-07 18:27:58,910 - DEBUG - Taking top 8 variants by coverage in window 9:97637159-97637160
2012-10-07 18:27:59,059 - DEBUG - Taking top 8 variants by coverage in window 9:97638502-97638503
2012-10-07 18:28:00,684 - DEBUG - Taking top 8 variants by coverage in window 9:97663674-97663675
2012-10-07 18:28:01,999 - DEBUG - Taking top 8 variants by coverage in window 9:97683749-97683750
2012-10-07 18:28:02,202 - DEBUG - Taking top 8 variants by coverage in window 9:97686151-97686153
2012-10-07 18:28:02,312 - DEBUG - Taking top 8 variants by coverage in window 9:97686155-97686156
2012-10-07 18:28:03,769 - DEBUG - Taking top 8 variants by coverage in window 9:97693117-97693118
2012-10-07 18:28:04,170 - DEBUG - Taking top 8 variants by coverage in window 9:97697976-97697979
2012-10-07 18:28:04,580 - DEBUG - Taking top 8 variants by coverage in window 9:97704713-97704714
2012-10-07 18:28:05,079 - DEBUG - Taking top 8 variants by coverage in window 9:97709743-97709744
2012-10-07 18:28:06,647 - DEBUG - Taking top 8 variants by coverage in window 9:97731562-97731563
2012-10-07 18:28:07,088 - DEBUG - Taking top 8 variants by coverage in window 9:97736993-97737002
2012-10-07 18:28:07,104 - DEBUG - Taking top 8 variants by coverage in window 9:97737003-97737004
2012-10-07 18:28:07,287 - DEBUG - Taking top 8 variants by coverage in window 9:97740361-97740363
2012-10-07 18:28:07,969 - DEBUG - Taking top 8 variants by coverage in window 9:97747753-97747754
2012-10-07 18:28:08,612 - DEBUG - Taking top 8 variants by coverage in window 9:97755096-97755097
2012-10-07 18:28:09,182 - DEBUG - Taking top 8 variants by coverage in window 9:97761905-97761906
2012-10-07 18:28:09,590 - DEBUG - Taking top 8 variants by coverage in window 9:97766843-97766845
2012-10-07 18:28:09,710 - DEBUG - Taking top 8 variants by coverage in window 9:97768719-97768735
2012-10-07 18:28:10,289 - DEBUG - Taking top 8 variants by coverage in window 9:97778495-97778496
2012-10-07 18:28:10,571 - DEBUG - Taking top 8 variants by coverage in window 9:97782650-97782651
2012-10-07 18:28:10,652 - DEBUG - Taking top 8 variants by coverage in window 9:97782674-97782675
2012-10-07 18:28:10,911 - DEBUG - Taking top 8 variants by coverage in window 9:97785017-97785018
2012-10-07 18:28:11,539 - DEBUG - Taking top 8 variants by coverage in window 9:97795958-97795961
2012-10-07 18:28:11,637 - DEBUG - Taking top 8 variants by coverage in window 9:97796956-97796957
2012-10-07 18:28:12,029 - DEBUG - Taking top 8 variants by coverage in window 9:97802826-97802827
2012-10-07 18:28:12,544 - DEBUG - Taking top 8 variants by coverage in window 9:97805638-97805639
2012-10-07 18:28:12,879 - DEBUG - Taking top 8 variants by coverage in window 9:97809312-97809313
2012-10-07 18:28:13,682 - DEBUG - Taking top 8 variants by coverage in window 9:97818485-97818491
2012-10-07 18:28:13,804 - DEBUG - Taking top 8 variants by coverage in window 9:97818498-97818499
2012-10-07 18:28:14,266 - DEBUG - Taking top 8 variants by coverage in window 9:97824222-97824223
2012-10-07 18:28:14,819 - DEBUG - Taking top 8 variants by coverage in window 9:97834184-97834197
2012-10-07 18:28:15,059 - DEBUG - Taking top 8 variants by coverage in window 9:97837967-97837968
2012-10-07 18:28:15,743 - DEBUG - Taking top 8 variants by coverage in window 9:97849066-97849072
2012-10-07 18:28:16,462 - DEBUG - Taking top 8 variants by coverage in window 9:97849095-97849096
2012-10-07 18:28:16,765 - DEBUG - Taking top 8 variants by coverage in window 9:97850621-97850622
2012-10-07 18:28:17,334 - DEBUG - Taking top 8 variants by coverage in window 9:97856599-97856600
2012-10-07 18:28:17,399 - DEBUG - Taking top 8 variants by coverage in window 9:97857171-97857172
2012-10-07 18:28:17,819 - DEBUG - Taking top 8 variants by coverage in window 9:97862209-97862210
2012-10-07 18:28:17,966 - DEBUG - Taking top 8 variants by coverage in window 9:97863824-97863825
2012-10-07 18:28:18,738 - DEBUG - Taking top 8 variants by coverage in window 9:97876511-97876512
2012-10-07 18:28:18,922 - DEBUG - Taking top 8 variants by coverage in window 9:97878687-97878689
2012-10-07 18:28:18,934 - DEBUG - Taking top 8 variants by coverage in window 9:97878690-97878693
2012-10-07 18:28:19,659 - DEBUG - Taking top 8 variants by coverage in window 9:97884460-97884461
2012-10-07 18:28:19,917 - DEBUG - Taking top 8 variants by coverage in window 9:97887822-97887823
2012-10-07 18:28:20,144 - DEBUG - Taking top 8 variants by coverage in window 9:97893997-97893998
2012-10-07 18:28:20,346 - DEBUG - Taking top 8 variants by coverage in window 9:97895847-97895850
2012-10-07 18:28:20,358 - DEBUG - Taking top 8 variants by coverage in window 9:97895851-97895852
2012-10-07 18:28:20,707 - DEBUG - Taking top 8 variants by coverage in window 9:97900444-97900445
2012-10-07 18:28:21,000 - DEBUG - Taking top 8 variants by coverage in window 9:97904117-97904118
2012-10-07 18:28:21,999 - DEBUG - Taking top 8 variants by coverage in window 9:97914922-97914923
2012-10-07 18:28:22,505 - DEBUG - Taking top 8 variants by coverage in window 9:97921717-97921741
2012-10-07 18:28:22,743 - DEBUG - Taking top 8 variants by coverage in window 9:97924681-97924684
2012-10-07 18:28:23,730 - DEBUG - Taking top 8 variants by coverage in window 9:97937783-97937784
2012-10-07 18:28:23,800 - DEBUG - Taking top 8 variants by coverage in window 9:97937959-97937960
2012-10-07 18:28:24,069 - DEBUG - Taking top 8 variants by coverage in window 9:97939813-97939814
2012-10-07 18:28:24,096 - DEBUG - Taking top 8 variants by coverage in window 9:97939821-97939822
2012-10-07 18:28:24,116 - DEBUG - Taking top 8 variants by coverage in window 9:97939822-97939823
2012-10-07 18:28:24,358 - DEBUG - Taking top 8 variants by coverage in window 9:97942074-97942075
2012-10-07 18:28:24,874 - DEBUG - Taking top 8 variants by coverage in window 9:97950694-97950695
2012-10-07 18:28:25,279 - DEBUG - Taking top 8 variants by coverage in window 9:97959366-97959367
2012-10-07 18:28:25,765 - DEBUG - Taking top 8 variants by coverage in window 9:97966655-97966656
2012-10-07 18:28:26,092 - DEBUG - Taking top 8 variants by coverage in window 9:97973107-97973109
2012-10-07 18:28:26,161 - DEBUG - Taking top 8 variants by coverage in window 9:97973730-97973731
2012-10-07 18:28:27,009 - DEBUG - Taking top 8 variants by coverage in window 9:97989876-97989877
2012-10-07 18:28:27,286 - DEBUG - Taking top 8 variants by coverage in window 9:97996653-97996654
2012-10-07 18:28:28,624 - DEBUG - Read 100149 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 18:28:29,071 - DEBUG - Read 108416 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 18:28:29,508 - DEBUG - Read 125339 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 18:28:29,957 - DEBUG - Read 127207 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 18:28:30,430 - DEBUG - Read 118821 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 18:28:30,939 - DEBUG - Read 114058 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 18:28:31,597 - DEBUG - Read 121048 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 18:28:32,140 - DEBUG - Read 110010 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 18:28:32,703 - DEBUG - Read 106265 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 18:28:33,254 - DEBUG - Read 104821 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 18:28:33,874 - DEBUG - Read 116323 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 18:28:34,286 - DEBUG - Read 106423 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 18:28:34,765 - DEBUG - Read 107885 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 18:28:35,215 - DEBUG - Read 118646 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 18:28:35,592 - DEBUG - Read 127794 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 18:28:35,896 - DEBUG - Read 101018 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 18:28:36,278 - DEBUG - Read 123018 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 18:28:36,625 - DEBUG - Read 116591 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 18:28:36,927 - DEBUG - Read 103791 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 18:28:37,250 - DEBUG - Read 100010 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 18:28:37,377 - DEBUG - Detected 26203 variants in 100149 reads
2012-10-07 18:28:37,562 - DEBUG - Detected 36655 variants in 108416 reads
2012-10-07 18:28:37,800 - DEBUG - Detected 45288 variants in 125339 reads
2012-10-07 18:28:38,081 - DEBUG - Detected 53189 variants in 127207 reads
2012-10-07 18:28:38,392 - DEBUG - Detected 60307 variants in 118821 reads
2012-10-07 18:28:38,728 - DEBUG - Detected 66974 variants in 114058 reads
2012-10-07 18:28:39,145 - DEBUG - Detected 80888 variants in 121048 reads
2012-10-07 18:28:39,582 - DEBUG - Detected 86805 variants in 110010 reads
2012-10-07 18:28:40,042 - DEBUG - Detected 93088 variants in 106265 reads
2012-10-07 18:28:40,529 - DEBUG - Detected 98225 variants in 104821 reads
2012-10-07 18:28:41,057 - DEBUG - Detected 104159 variants in 116323 reads
2012-10-07 18:28:41,642 - DEBUG - Detected 108272 variants in 106423 reads
2012-10-07 18:28:42,201 - DEBUG - Detected 112338 variants in 107885 reads
2012-10-07 18:28:42,792 - DEBUG - Detected 117028 variants in 118646 reads
2012-10-07 18:28:43,424 - DEBUG - Detected 124827 variants in 127794 reads
2012-10-07 18:28:44,051 - DEBUG - Detected 128770 variants in 101018 reads
2012-10-07 18:28:44,778 - DEBUG - Detected 132597 variants in 123018 reads
2012-10-07 18:28:45,471 - DEBUG - Detected 137067 variants in 116591 reads
2012-10-07 18:28:46,167 - DEBUG - Detected 141531 variants in 103791 reads
2012-10-07 18:28:46,890 - DEBUG - Detected 145702 variants in 100010 reads
2012-10-07 18:28:47,975 - DEBUG - Taking top 8 variants by coverage in window 9:98000430-98000433
2012-10-07 18:28:48,011 - DEBUG - Taking top 8 variants by coverage in window 9:98000459-98000460
2012-10-07 18:28:48,190 - DEBUG - Taking top 8 variants by coverage in window 9:98002052-98002054
2012-10-07 18:28:48,365 - DEBUG - Taking top 8 variants by coverage in window 9:98003630-98003631
2012-10-07 18:28:48,507 - DEBUG - Taking top 8 variants by coverage in window 9:98008486-98008490
2012-10-07 18:28:48,671 - DEBUG - Taking top 8 variants by coverage in window 9:98012092-98012093
2012-10-07 18:28:49,316 - DEBUG - Taking top 8 variants by coverage in window 9:98028299-98028300
2012-10-07 18:28:49,599 - DEBUG - Taking top 8 variants by coverage in window 9:98033008-98033009
2012-10-07 18:28:49,748 - DEBUG - Taking top 8 variants by coverage in window 9:98036109-98036110
2012-10-07 18:28:49,787 - DEBUG - Taking top 8 variants by coverage in window 9:98036567-98036568
2012-10-07 18:28:49,876 - DEBUG - Taking top 8 variants by coverage in window 9:98038399-98038400
2012-10-07 18:28:50,319 - DEBUG - Taking top 8 variants by coverage in window 9:98045003-98045004
2012-10-07 18:28:50,480 - DEBUG - Taking top 8 variants by coverage in window 9:98045663-98045664
2012-10-07 18:28:50,495 - DEBUG - Taking top 8 variants by coverage in window 9:98045674-98045675
2012-10-07 18:28:50,620 - DEBUG - Taking top 8 variants by coverage in window 9:98047065-98047066
2012-10-07 18:28:50,627 - DEBUG - Taking top 8 variants by coverage in window 9:98047068-98047071
2012-10-07 18:28:50,934 - DEBUG - Taking top 8 variants by coverage in window 9:98049708-98049711
2012-10-07 18:28:51,024 - DEBUG - Taking top 8 variants by coverage in window 9:98049746-98049747
2012-10-07 18:28:51,098 - DEBUG - Taking top 8 variants by coverage in window 9:98049946-98049947
2012-10-07 18:28:51,624 - DEBUG - Taking top 8 variants by coverage in window 9:98060003-98060004
2012-10-07 18:28:52,053 - DEBUG - Taking top 8 variants by coverage in window 9:98066766-98066767
2012-10-07 18:28:52,109 - DEBUG - Taking top 8 variants by coverage in window 9:98073345-98073347
2012-10-07 18:28:52,455 - DEBUG - Taking top 8 variants by coverage in window 9:98081609-98081610
2012-10-07 18:28:53,116 - DEBUG - Taking top 8 variants by coverage in window 9:98093388-98093389
2012-10-07 18:28:53,813 - DEBUG - Taking top 8 variants by coverage in window 9:98106043-98106045
2012-10-07 18:28:54,059 - DEBUG - Taking top 8 variants by coverage in window 9:98110348-98110349
2012-10-07 18:28:54,367 - DEBUG - Taking top 8 variants by coverage in window 9:98119830-98119831
2012-10-07 18:28:54,377 - DEBUG - Taking top 8 variants by coverage in window 9:98119850-98119851
2012-10-07 18:28:54,419 - DEBUG - Taking top 8 variants by coverage in window 9:98121166-98121167
2012-10-07 18:28:54,757 - DEBUG - Taking top 8 variants by coverage in window 9:98130499-98130500
2012-10-07 18:28:54,797 - DEBUG - Taking top 8 variants by coverage in window 9:98130977-98130978
2012-10-07 18:28:54,966 - DEBUG - Taking top 8 variants by coverage in window 9:98137034-98137035
2012-10-07 18:28:56,083 - DEBUG - Taking top 8 variants by coverage in window 9:98164627-98164628
2012-10-07 18:28:56,300 - DEBUG - Taking top 8 variants by coverage in window 9:98166469-98166473
2012-10-07 18:28:56,618 - DEBUG - Taking top 8 variants by coverage in window 9:98170707-98170708
2012-10-07 18:28:56,903 - DEBUG - Taking top 8 variants by coverage in window 9:98177306-98177323
2012-10-07 18:28:57,193 - DEBUG - Taking top 8 variants by coverage in window 9:98182480-98182481
2012-10-07 18:28:57,346 - DEBUG - Taking top 8 variants by coverage in window 9:98185507-98185508
2012-10-07 18:28:57,359 - DEBUG - Taking top 8 variants by coverage in window 9:98185510-98185511
2012-10-07 18:28:58,424 - DEBUG - Taking top 8 variants by coverage in window 9:98200097-98200098
2012-10-07 18:28:59,021 - DEBUG - Taking top 8 variants by coverage in window 9:98210400-98210410
2012-10-07 18:28:59,159 - DEBUG - Taking top 8 variants by coverage in window 9:98212101-98212102
2012-10-07 18:28:59,181 - DEBUG - Taking top 8 variants by coverage in window 9:98212103-98212104
2012-10-07 18:28:59,787 - DEBUG - Taking top 8 variants by coverage in window 9:98220508-98220509
2012-10-07 18:28:59,946 - DEBUG - Taking top 8 variants by coverage in window 9:98223303-98223304
2012-10-07 18:29:00,251 - DEBUG - Taking top 8 variants by coverage in window 9:98228577-98228578
2012-10-07 18:29:00,997 - DEBUG - Taking top 8 variants by coverage in window 9:98235888-98235889
2012-10-07 18:29:01,060 - DEBUG - Taking top 8 variants by coverage in window 9:98236371-98236372
2012-10-07 18:29:01,646 - DEBUG - Taking top 8 variants by coverage in window 9:98246091-98246101
2012-10-07 18:29:01,662 - DEBUG - Taking top 8 variants by coverage in window 9:98246226-98246227
2012-10-07 18:29:02,147 - DEBUG - Taking top 8 variants by coverage in window 9:98251363-98251366
2012-10-07 18:29:02,711 - DEBUG - Taking top 8 variants by coverage in window 9:98257944-98257946
2012-10-07 18:29:02,875 - DEBUG - Taking top 8 variants by coverage in window 9:98260592-98260593
2012-10-07 18:29:02,905 - DEBUG - Taking top 8 variants by coverage in window 9:98260723-98260724
2012-10-07 18:29:02,916 - DEBUG - Taking top 8 variants by coverage in window 9:98260744-98260745
2012-10-07 18:29:02,956 - DEBUG - Taking top 8 variants by coverage in window 9:98261188-98261189
2012-10-07 18:29:03,311 - DEBUG - Taking top 8 variants by coverage in window 9:98266238-98266240
2012-10-07 18:29:04,103 - DEBUG - Taking top 8 variants by coverage in window 9:98279696-98279698
2012-10-07 18:29:04,156 - DEBUG - Taking top 8 variants by coverage in window 9:98279727-98279728
2012-10-07 18:29:05,604 - DEBUG - Taking top 8 variants by coverage in window 9:98298631-98298632
2012-10-07 18:29:05,800 - DEBUG - Taking top 8 variants by coverage in window 9:98301036-98301037
2012-10-07 18:29:06,060 - DEBUG - Taking top 8 variants by coverage in window 9:98305492-98305493
2012-10-07 18:29:06,318 - DEBUG - Taking top 8 variants by coverage in window 9:98308580-98308581
2012-10-07 18:29:06,327 - DEBUG - Taking top 8 variants by coverage in window 9:98308582-98308583
2012-10-07 18:29:07,455 - DEBUG - Taking top 8 variants by coverage in window 9:98318120-98318121
2012-10-07 18:29:07,492 - DEBUG - Taking top 8 variants by coverage in window 9:98318196-98318197
2012-10-07 18:29:07,643 - DEBUG - Taking top 8 variants by coverage in window 9:98319187-98319188
2012-10-07 18:29:07,764 - DEBUG - Taking top 8 variants by coverage in window 9:98320063-98320065
2012-10-07 18:29:07,792 - DEBUG - Taking top 8 variants by coverage in window 9:98320077-98320078
2012-10-07 18:29:09,093 - DEBUG - Taking top 8 variants by coverage in window 9:98334117-98334121
2012-10-07 18:29:09,417 - DEBUG - Taking top 8 variants by coverage in window 9:98337737-98337738
2012-10-07 18:29:09,544 - DEBUG - Taking top 8 variants by coverage in window 9:98340123-98340124
2012-10-07 18:29:09,854 - DEBUG - Taking top 8 variants by coverage in window 9:98344141-98344142
2012-10-07 18:29:10,934 - DEBUG - Taking top 8 variants by coverage in window 9:98351813-98351814
2012-10-07 18:29:11,098 - DEBUG - Taking top 8 variants by coverage in window 9:98359582-98359583
2012-10-07 18:29:11,147 - DEBUG - Taking top 8 variants by coverage in window 9:98359598-98359599
2012-10-07 18:29:11,340 - DEBUG - Taking top 8 variants by coverage in window 9:98361089-98361090
2012-10-07 18:29:11,407 - DEBUG - Taking top 8 variants by coverage in window 9:98364022-98364029
2012-10-07 18:29:12,307 - DEBUG - Taking top 8 variants by coverage in window 9:98378023-98378024
2012-10-07 18:29:12,529 - DEBUG - Taking top 8 variants by coverage in window 9:98380370-98380382
2012-10-07 18:29:13,150 - DEBUG - Taking top 8 variants by coverage in window 9:98387505-98387521
2012-10-07 18:29:13,544 - DEBUG - Taking top 8 variants by coverage in window 9:98394811-98394812
2012-10-07 18:29:13,832 - DEBUG - Taking top 8 variants by coverage in window 9:98398771-98398775
2012-10-07 18:29:15,117 - DEBUG - Taking top 8 variants by coverage in window 9:98408910-98408911
2012-10-07 18:29:15,975 - DEBUG - Taking top 8 variants by coverage in window 9:98416383-98416384
2012-10-07 18:29:16,017 - DEBUG - Taking top 8 variants by coverage in window 9:98416392-98416393
2012-10-07 18:29:16,039 - DEBUG - Taking top 8 variants by coverage in window 9:98416397-98416398
2012-10-07 18:29:16,077 - DEBUG - Taking top 8 variants by coverage in window 9:98416406-98416408
2012-10-07 18:29:16,333 - DEBUG - Taking top 8 variants by coverage in window 9:98418074-98418080
2012-10-07 18:29:17,168 - DEBUG - Taking top 8 variants by coverage in window 9:98424242-98424243
2012-10-07 18:29:17,217 - DEBUG - Taking top 8 variants by coverage in window 9:98424352-98424353
2012-10-07 18:29:17,258 - DEBUG - Taking top 8 variants by coverage in window 9:98424374-98424377
2012-10-07 18:29:17,640 - DEBUG - Taking top 8 variants by coverage in window 9:98424485-98424486
2012-10-07 18:29:17,857 - DEBUG - Taking top 8 variants by coverage in window 9:98426733-98426734
2012-10-07 18:29:18,042 - DEBUG - Taking top 8 variants by coverage in window 9:98427032-98427036
2012-10-07 18:29:18,134 - DEBUG - Taking top 8 variants by coverage in window 9:98427165-98427166
2012-10-07 18:29:18,460 - DEBUG - Taking top 8 variants by coverage in window 9:98430786-98430788
2012-10-07 18:29:19,115 - DEBUG - Taking top 8 variants by coverage in window 9:98439548-98439549
2012-10-07 18:29:19,743 - DEBUG - Taking top 8 variants by coverage in window 9:98448047-98448051
2012-10-07 18:29:20,051 - DEBUG - Taking top 8 variants by coverage in window 9:98451717-98451723
2012-10-07 18:29:20,078 - DEBUG - Taking top 8 variants by coverage in window 9:98451739-98451740
2012-10-07 18:29:20,554 - DEBUG - Taking top 8 variants by coverage in window 9:98456682-98456684
2012-10-07 18:29:20,577 - DEBUG - Taking top 8 variants by coverage in window 9:98456899-98456900
2012-10-07 18:29:20,932 - DEBUG - Taking top 8 variants by coverage in window 9:98462054-98462055
2012-10-07 18:29:20,951 - DEBUG - Taking top 8 variants by coverage in window 9:98462094-98462095
2012-10-07 18:29:22,209 - DEBUG - Taking top 8 variants by coverage in window 9:98489836-98489837
2012-10-07 18:29:22,778 - DEBUG - Taking top 8 variants by coverage in window 9:98496065-98496066
2012-10-07 18:29:23,291 - DEBUG - Taking top 8 variants by coverage in window 9:98501114-98501117
2012-10-07 18:29:23,501 - DEBUG - Taking top 8 variants by coverage in window 9:98501804-98501816
2012-10-07 18:29:23,589 - DEBUG - Taking top 8 variants by coverage in window 9:98502639-98502640
2012-10-07 18:29:23,671 - DEBUG - Taking top 8 variants by coverage in window 9:98502959-98502960
2012-10-07 18:29:24,139 - DEBUG - Taking top 8 variants by coverage in window 9:98503462-98503466
2012-10-07 18:29:24,711 - DEBUG - Taking top 8 variants by coverage in window 9:98503593-98503596
2012-10-07 18:29:25,386 - DEBUG - Taking top 8 variants by coverage in window 9:98509890-98509896
2012-10-07 18:29:26,535 - DEBUG - Taking top 8 variants by coverage in window 9:98513127-98513128
2012-10-07 18:29:26,637 - DEBUG - Taking top 8 variants by coverage in window 9:98514174-98514191
2012-10-07 18:29:26,837 - DEBUG - Taking top 8 variants by coverage in window 9:98515978-98515983
2012-10-07 18:29:27,016 - DEBUG - Taking top 8 variants by coverage in window 9:98517916-98517918
2012-10-07 18:29:27,468 - DEBUG - Taking top 8 variants by coverage in window 9:98522210-98522235
2012-10-07 18:29:27,553 - DEBUG - Taking top 8 variants by coverage in window 9:98522421-98522422
2012-10-07 18:29:27,729 - DEBUG - Taking top 8 variants by coverage in window 9:98523222-98523223
2012-10-07 18:29:28,162 - DEBUG - Taking top 8 variants by coverage in window 9:98526695-98526700
2012-10-07 18:29:28,768 - DEBUG - Taking top 8 variants by coverage in window 9:98531233-98531235
2012-10-07 18:29:29,706 - DEBUG - Taking top 8 variants by coverage in window 9:98538321-98538322
2012-10-07 18:29:30,165 - DEBUG - Taking top 8 variants by coverage in window 9:98542463-98542471
2012-10-07 18:29:30,882 - DEBUG - Taking top 8 variants by coverage in window 9:98548305-98548306
2012-10-07 18:29:31,257 - DEBUG - Taking top 8 variants by coverage in window 9:98551893-98551894
2012-10-07 18:29:31,319 - DEBUG - Taking top 8 variants by coverage in window 9:98551911-98551912
2012-10-07 18:29:31,718 - DEBUG - Taking top 8 variants by coverage in window 9:98553972-98553973
2012-10-07 18:29:31,780 - DEBUG - Taking top 8 variants by coverage in window 9:98554300-98554301
2012-10-07 18:29:33,482 - DEBUG - Taking top 8 variants by coverage in window 9:98570071-98570083
2012-10-07 18:29:33,509 - DEBUG - Taking top 8 variants by coverage in window 9:98570097-98570100
2012-10-07 18:29:33,613 - DEBUG - Taking top 8 variants by coverage in window 9:98570845-98570846
2012-10-07 18:29:33,751 - DEBUG - Taking top 8 variants by coverage in window 9:98572574-98572577
2012-10-07 18:29:33,798 - DEBUG - Taking top 8 variants by coverage in window 9:98572895-98572896
2012-10-07 18:29:34,394 - DEBUG - Taking top 8 variants by coverage in window 9:98578025-98578026
2012-10-07 18:29:34,445 - DEBUG - Taking top 8 variants by coverage in window 9:98583967-98583968
2012-10-07 18:29:35,050 - DEBUG - Taking top 8 variants by coverage in window 9:98591537-98591538
2012-10-07 18:29:35,580 - DEBUG - Taking top 8 variants by coverage in window 9:98593461-98593465
2012-10-07 18:29:35,879 - DEBUG - Taking top 8 variants by coverage in window 9:98595217-98595218
2012-10-07 18:29:36,908 - DEBUG - Taking top 8 variants by coverage in window 9:98603121-98603122
2012-10-07 18:29:37,847 - DEBUG - Taking top 8 variants by coverage in window 9:98614132-98614133
2012-10-07 18:29:38,080 - DEBUG - Taking top 8 variants by coverage in window 9:98615820-98615826
2012-10-07 18:29:38,273 - DEBUG - Taking top 8 variants by coverage in window 9:98615831-98615832
2012-10-07 18:29:38,467 - DEBUG - Taking top 8 variants by coverage in window 9:98617155-98617158
2012-10-07 18:29:38,849 - DEBUG - Taking top 8 variants by coverage in window 9:98619266-98619284
2012-10-07 18:29:39,149 - DEBUG - Taking top 8 variants by coverage in window 9:98621422-98621425
2012-10-07 18:29:39,208 - DEBUG - Taking top 8 variants by coverage in window 9:98621662-98621663
2012-10-07 18:29:41,598 - DEBUG - Taking top 8 variants by coverage in window 9:98637806-98637807
2012-10-07 18:29:41,806 - DEBUG - Taking top 8 variants by coverage in window 9:98639959-98639960
2012-10-07 18:29:41,932 - DEBUG - Taking top 8 variants by coverage in window 9:98641124-98641125
2012-10-07 18:29:42,375 - DEBUG - Taking top 8 variants by coverage in window 9:98646224-98646225
2012-10-07 18:29:42,472 - DEBUG - Taking top 8 variants by coverage in window 9:98649253-98649254
2012-10-07 18:29:42,619 - DEBUG - Taking top 8 variants by coverage in window 9:98651049-98651053
2012-10-07 18:29:44,376 - DEBUG - Taking top 8 variants by coverage in window 9:98666827-98666828
2012-10-07 18:29:45,938 - DEBUG - Taking top 8 variants by coverage in window 9:98684955-98684961
2012-10-07 18:29:47,720 - DEBUG - Taking top 8 variants by coverage in window 9:98695142-98695143
2012-10-07 18:29:48,466 - DEBUG - Taking top 8 variants by coverage in window 9:98704264-98704265
2012-10-07 18:29:49,287 - DEBUG - Taking top 8 variants by coverage in window 9:98713525-98713526
2012-10-07 18:29:49,395 - DEBUG - Taking top 8 variants by coverage in window 9:98714356-98714357
2012-10-07 18:29:50,051 - DEBUG - Taking top 8 variants by coverage in window 9:98720003-98720005
2012-10-07 18:29:50,294 - DEBUG - Taking top 8 variants by coverage in window 9:98723677-98723678
2012-10-07 18:29:51,016 - DEBUG - Taking top 8 variants by coverage in window 9:98733214-98733220
2012-10-07 18:29:51,091 - DEBUG - Taking top 8 variants by coverage in window 9:98733230-98733231
2012-10-07 18:29:51,552 - DEBUG - Taking top 8 variants by coverage in window 9:98738468-98738469
2012-10-07 18:29:51,573 - DEBUG - Taking top 8 variants by coverage in window 9:98738472-98738473
2012-10-07 18:29:51,686 - DEBUG - Taking top 8 variants by coverage in window 9:98738617-98738618
2012-10-07 18:29:52,459 - DEBUG - Taking top 8 variants by coverage in window 9:98753183-98753184
2012-10-07 18:29:52,601 - DEBUG - Taking top 8 variants by coverage in window 9:98755807-98755808
2012-10-07 18:29:52,665 - DEBUG - Taking top 8 variants by coverage in window 9:98756658-98756659
2012-10-07 18:29:53,109 - DEBUG - Taking top 8 variants by coverage in window 9:98764496-98764497
2012-10-07 18:29:53,434 - DEBUG - Taking top 8 variants by coverage in window 9:98770586-98770587
2012-10-07 18:29:53,905 - DEBUG - Taking top 8 variants by coverage in window 9:98776646-98776647
2012-10-07 18:29:54,004 - DEBUG - Taking top 8 variants by coverage in window 9:98778055-98778056
2012-10-07 18:29:54,235 - DEBUG - Taking top 8 variants by coverage in window 9:98781211-98781212
2012-10-07 18:29:54,477 - DEBUG - Taking top 8 variants by coverage in window 9:98784716-98784720
2012-10-07 18:29:54,505 - DEBUG - Taking top 8 variants by coverage in window 9:98784721-98784724
2012-10-07 18:29:54,719 - DEBUG - Taking top 8 variants by coverage in window 9:98785483-98785485
2012-10-07 18:29:55,254 - DEBUG - Taking top 8 variants by coverage in window 9:98787808-98787809
2012-10-07 18:29:57,028 - DEBUG - Taking top 8 variants by coverage in window 9:98791701-98791702
2012-10-07 18:29:57,612 - DEBUG - Taking top 8 variants by coverage in window 9:98793254-98793260
2012-10-07 18:29:57,694 - DEBUG - Taking top 8 variants by coverage in window 9:98793307-98793314
2012-10-07 18:30:00,001 - DEBUG - Taking top 8 variants by coverage in window 9:98818887-98818889
2012-10-07 18:30:00,577 - DEBUG - Taking top 8 variants by coverage in window 9:98823148-98823149
2012-10-07 18:30:00,656 - DEBUG - Taking top 8 variants by coverage in window 9:98824458-98824459
2012-10-07 18:30:01,917 - DEBUG - Taking top 8 variants by coverage in window 9:98839462-98839463
2012-10-07 18:30:01,937 - DEBUG - Taking top 8 variants by coverage in window 9:98839486-98839487
2012-10-07 18:30:02,632 - DEBUG - Taking top 8 variants by coverage in window 9:98850433-98850440
2012-10-07 18:30:02,745 - DEBUG - Taking top 8 variants by coverage in window 9:98850531-98850532
2012-10-07 18:30:03,638 - DEBUG - Taking top 8 variants by coverage in window 9:98866820-98866847
2012-10-07 18:30:04,514 - DEBUG - Taking top 8 variants by coverage in window 9:98869849-98869850
2012-10-07 18:30:04,617 - DEBUG - Taking top 8 variants by coverage in window 9:98870318-98870319
2012-10-07 18:30:05,750 - DEBUG - Taking top 8 variants by coverage in window 9:98889745-98889746
2012-10-07 18:30:05,824 - DEBUG - Taking top 8 variants by coverage in window 9:98890527-98890531
2012-10-07 18:30:06,295 - DEBUG - Taking top 8 variants by coverage in window 9:98895931-98895933
2012-10-07 18:30:06,355 - DEBUG - Taking top 8 variants by coverage in window 9:98896334-98896335
2012-10-07 18:30:06,374 - DEBUG - Taking top 8 variants by coverage in window 9:98896340-98896345
2012-10-07 18:30:06,532 - DEBUG - Taking top 8 variants by coverage in window 9:98896353-98896354
2012-10-07 18:30:06,581 - DEBUG - Taking top 8 variants by coverage in window 9:98897085-98897086
2012-10-07 18:30:07,065 - DEBUG - Taking top 8 variants by coverage in window 9:98905411-98905412
2012-10-07 18:30:07,518 - DEBUG - Taking top 8 variants by coverage in window 9:98912326-98912327
2012-10-07 18:30:07,585 - DEBUG - Taking top 8 variants by coverage in window 9:98912387-98912388
2012-10-07 18:30:08,212 - DEBUG - Taking top 8 variants by coverage in window 9:98917553-98917554
2012-10-07 18:30:08,309 - DEBUG - Taking top 8 variants by coverage in window 9:98917881-98917882
2012-10-07 18:30:08,339 - DEBUG - Taking top 8 variants by coverage in window 9:98917886-98917887
2012-10-07 18:30:09,654 - DEBUG - Taking top 8 variants by coverage in window 9:98918028-98918029
2012-10-07 18:30:11,246 - DEBUG - Taking top 8 variants by coverage in window 9:98927998-98928006
2012-10-07 18:30:11,433 - DEBUG - Taking top 8 variants by coverage in window 9:98928342-98928343
2012-10-07 18:30:11,795 - DEBUG - Taking top 8 variants by coverage in window 9:98933049-98933052
2012-10-07 18:30:12,511 - DEBUG - Taking top 8 variants by coverage in window 9:98940839-98940843
2012-10-07 18:30:14,504 - DEBUG - Taking top 8 variants by coverage in window 9:98964322-98964323
2012-10-07 18:30:14,894 - DEBUG - Taking top 8 variants by coverage in window 9:98968418-98968420
2012-10-07 18:30:15,327 - DEBUG - Taking top 8 variants by coverage in window 9:98971729-98971735
2012-10-07 18:30:15,513 - DEBUG - Taking top 8 variants by coverage in window 9:98972751-98972754
2012-10-07 18:30:15,973 - DEBUG - Taking top 8 variants by coverage in window 9:98973467-98973468
2012-10-07 18:30:16,068 - DEBUG - Taking top 8 variants by coverage in window 9:98974615-98974616
2012-10-07 18:30:17,503 - DEBUG - Taking top 8 variants by coverage in window 9:98974762-98974763
2012-10-07 18:30:17,891 - DEBUG - Taking top 8 variants by coverage in window 9:98980871-98980872
2012-10-07 18:30:17,910 - DEBUG - Taking top 8 variants by coverage in window 9:98980941-98980942
2012-10-07 18:30:18,150 - DEBUG - Taking top 8 variants by coverage in window 9:98984344-98984348
2012-10-07 18:30:18,320 - DEBUG - Taking top 8 variants by coverage in window 9:98984642-98984643
2012-10-07 18:30:18,365 - DEBUG - Taking top 8 variants by coverage in window 9:98984973-98984974
2012-10-07 18:30:19,991 - DEBUG - Read 95456 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 18:30:20,236 - DEBUG - Read 103748 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 18:30:20,499 - DEBUG - Read 120159 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 18:30:20,796 - DEBUG - Read 120325 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 18:30:21,075 - DEBUG - Read 113077 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 18:30:21,326 - DEBUG - Read 109020 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 18:30:21,589 - DEBUG - Read 115172 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 18:30:21,842 - DEBUG - Read 103268 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 18:30:22,081 - DEBUG - Read 99663 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 18:30:22,325 - DEBUG - Read 100420 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 18:30:22,587 - DEBUG - Read 110750 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 18:30:22,845 - DEBUG - Read 99725 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 18:30:23,089 - DEBUG - Read 101797 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 18:30:23,338 - DEBUG - Read 112646 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 18:30:23,609 - DEBUG - Read 119888 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 18:30:23,840 - DEBUG - Read 94287 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 18:30:24,095 - DEBUG - Read 115895 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 18:30:24,355 - DEBUG - Read 110174 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 18:30:24,580 - DEBUG - Read 97727 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 18:30:24,818 - DEBUG - Read 95068 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 18:30:24,926 - DEBUG - Detected 24375 variants in 95456 reads
2012-10-07 18:30:25,104 - DEBUG - Detected 35525 variants in 103748 reads
2012-10-07 18:30:25,336 - DEBUG - Detected 47126 variants in 120159 reads
2012-10-07 18:30:25,616 - DEBUG - Detected 55151 variants in 120325 reads
2012-10-07 18:30:25,943 - DEBUG - Detected 61585 variants in 113077 reads
2012-10-07 18:30:26,274 - DEBUG - Detected 67546 variants in 109020 reads
2012-10-07 18:30:26,642 - DEBUG - Detected 81618 variants in 115172 reads
2012-10-07 18:30:27,059 - DEBUG - Detected 87302 variants in 103268 reads
2012-10-07 18:30:27,502 - DEBUG - Detected 93605 variants in 99663 reads
2012-10-07 18:30:27,961 - DEBUG - Detected 99898 variants in 100420 reads
2012-10-07 18:30:28,498 - DEBUG - Detected 104846 variants in 110750 reads
2012-10-07 18:30:29,009 - DEBUG - Detected 109032 variants in 99725 reads
2012-10-07 18:30:29,541 - DEBUG - Detected 113422 variants in 101797 reads
2012-10-07 18:30:30,104 - DEBUG - Detected 117745 variants in 112646 reads
2012-10-07 18:30:30,697 - DEBUG - Detected 125134 variants in 119888 reads
2012-10-07 18:30:31,339 - DEBUG - Detected 129225 variants in 94287 reads
2012-10-07 18:30:31,982 - DEBUG - Detected 133114 variants in 115895 reads
2012-10-07 18:30:32,638 - DEBUG - Detected 137745 variants in 110174 reads
2012-10-07 18:30:33,300 - DEBUG - Detected 142071 variants in 97727 reads
2012-10-07 18:30:34,030 - DEBUG - Detected 146762 variants in 95068 reads
2012-10-07 18:30:35,671 - DEBUG - Taking top 8 variants by coverage in window 9:99006556-99006557
2012-10-07 18:30:36,234 - DEBUG - Taking top 8 variants by coverage in window 9:99009628-99009629
2012-10-07 18:30:36,629 - DEBUG - Taking top 8 variants by coverage in window 9:99014329-99014330
2012-10-07 18:30:36,739 - DEBUG - Taking top 8 variants by coverage in window 9:99014595-99014610
2012-10-07 18:30:37,426 - DEBUG - Taking top 8 variants by coverage in window 9:99019753-99019754
2012-10-07 18:30:38,156 - DEBUG - Taking top 8 variants by coverage in window 9:99026875-99026878
2012-10-07 18:30:38,302 - DEBUG - Taking top 8 variants by coverage in window 9:99027590-99027595
2012-10-07 18:30:38,449 - DEBUG - Taking top 8 variants by coverage in window 9:99027649-99027650
2012-10-07 18:30:38,862 - DEBUG - Taking top 8 variants by coverage in window 9:99033953-99033954
2012-10-07 18:30:39,590 - DEBUG - Taking top 8 variants by coverage in window 9:99044223-99044224
2012-10-07 18:30:39,730 - DEBUG - Taking top 8 variants by coverage in window 9:99045939-99045940
2012-10-07 18:30:40,778 - DEBUG - Taking top 8 variants by coverage in window 9:99055201-99055202
2012-10-07 18:30:41,842 - DEBUG - Taking top 8 variants by coverage in window 9:99065900-99065902
2012-10-07 18:30:41,939 - DEBUG - Taking top 8 variants by coverage in window 9:99066263-99066264
2012-10-07 18:30:42,276 - DEBUG - Taking top 8 variants by coverage in window 9:99069981-99069982
2012-10-07 18:30:42,296 - DEBUG - Taking top 8 variants by coverage in window 9:99070263-99070264
2012-10-07 18:30:42,614 - DEBUG - Taking top 8 variants by coverage in window 9:99075796-99075812
2012-10-07 18:30:43,521 - DEBUG - Taking top 8 variants by coverage in window 9:99084429-99084433
2012-10-07 18:30:44,076 - DEBUG - Taking top 8 variants by coverage in window 9:99089361-99089362
2012-10-07 18:30:44,086 - DEBUG - Taking top 8 variants by coverage in window 9:99089364-99089365
2012-10-07 18:30:44,272 - DEBUG - Taking top 8 variants by coverage in window 9:99091279-99091283
2012-10-07 18:30:44,355 - DEBUG - Taking top 8 variants by coverage in window 9:99091840-99091841
2012-10-07 18:30:44,370 - DEBUG - Taking top 8 variants by coverage in window 9:99091844-99091845
2012-10-07 18:30:44,587 - DEBUG - Taking top 8 variants by coverage in window 9:99092869-99092870
2012-10-07 18:30:44,835 - DEBUG - Taking top 8 variants by coverage in window 9:99095201-99095202
2012-10-07 18:30:45,102 - DEBUG - Taking top 8 variants by coverage in window 9:99097590-99097602
2012-10-07 18:30:45,232 - DEBUG - Taking top 8 variants by coverage in window 9:99098140-99098141
2012-10-07 18:30:45,464 - DEBUG - Taking top 8 variants by coverage in window 9:99099991-99099995
2012-10-07 18:30:45,664 - DEBUG - Taking top 8 variants by coverage in window 9:99100301-99100302
2012-10-07 18:30:45,899 - DEBUG - Taking top 8 variants by coverage in window 9:99101435-99101436
2012-10-07 18:30:45,950 - DEBUG - Taking top 8 variants by coverage in window 9:99101927-99101928
2012-10-07 18:30:46,198 - DEBUG - Taking top 8 variants by coverage in window 9:99103596-99103609
2012-10-07 18:30:48,606 - DEBUG - Taking top 8 variants by coverage in window 9:99130262-99130263
2012-10-07 18:30:49,380 - DEBUG - Taking top 8 variants by coverage in window 9:99141408-99141409
2012-10-07 18:30:49,979 - DEBUG - Taking top 8 variants by coverage in window 9:99148877-99148880
2012-10-07 18:30:50,127 - DEBUG - Taking top 8 variants by coverage in window 9:99149532-99149534
2012-10-07 18:30:50,149 - DEBUG - Taking top 8 variants by coverage in window 9:99149551-99149556
2012-10-07 18:30:50,210 - DEBUG - Taking top 8 variants by coverage in window 9:99149562-99149563
2012-10-07 18:30:50,313 - DEBUG - Taking top 8 variants by coverage in window 9:99150955-99150956
2012-10-07 18:30:51,224 - DEBUG - Taking top 8 variants by coverage in window 9:99159917-99159918
2012-10-07 18:30:51,253 - DEBUG - Taking top 8 variants by coverage in window 9:99160058-99160059
2012-10-07 18:30:51,804 - DEBUG - Taking top 8 variants by coverage in window 9:99173538-99173539
2012-10-07 18:30:52,498 - DEBUG - Taking top 8 variants by coverage in window 9:99183304-99183307
2012-10-07 18:30:52,641 - DEBUG - Taking top 8 variants by coverage in window 9:99185251-99185252
2012-10-07 18:30:52,758 - DEBUG - Taking top 8 variants by coverage in window 9:99187934-99187935
2012-10-07 18:30:53,162 - DEBUG - Taking top 8 variants by coverage in window 9:99192795-99192796
2012-10-07 18:30:53,768 - DEBUG - Taking top 8 variants by coverage in window 9:99201633-99201634
2012-10-07 18:30:54,447 - DEBUG - Taking top 8 variants by coverage in window 9:99208588-99208606
2012-10-07 18:30:54,585 - DEBUG - Taking top 8 variants by coverage in window 9:99209268-99209269
2012-10-07 18:30:54,919 - DEBUG - Taking top 8 variants by coverage in window 9:99213070-99213071
2012-10-07 18:30:55,328 - DEBUG - Taking top 8 variants by coverage in window 9:99219405-99219406
2012-10-07 18:30:55,451 - DEBUG - Taking top 8 variants by coverage in window 9:99220897-99220902
2012-10-07 18:30:55,977 - DEBUG - Taking top 8 variants by coverage in window 9:99227104-99227106
2012-10-07 18:30:55,986 - DEBUG - Taking top 8 variants by coverage in window 9:99227114-99227115
2012-10-07 18:30:56,020 - DEBUG - Taking top 8 variants by coverage in window 9:99227806-99227808
2012-10-07 18:30:57,076 - DEBUG - Taking top 8 variants by coverage in window 9:99239488-99239490
2012-10-07 18:30:57,217 - DEBUG - Taking top 8 variants by coverage in window 9:99239571-99239572
2012-10-07 18:30:57,235 - DEBUG - Taking top 8 variants by coverage in window 9:99239573-99239574
2012-10-07 18:30:57,457 - DEBUG - Taking top 8 variants by coverage in window 9:99242886-99242887
2012-10-07 18:30:57,837 - DEBUG - Taking top 8 variants by coverage in window 9:99246095-99246097
2012-10-07 18:30:58,010 - DEBUG - Taking top 8 variants by coverage in window 9:99247556-99247566
2012-10-07 18:30:58,214 - DEBUG - Taking top 8 variants by coverage in window 9:99248419-99248420
2012-10-07 18:30:58,244 - DEBUG - Taking top 8 variants by coverage in window 9:99248438-99248439
2012-10-07 18:30:58,699 - DEBUG - Taking top 8 variants by coverage in window 9:99251499-99251500
2012-10-07 18:30:59,248 - DEBUG - Taking top 8 variants by coverage in window 9:99256699-99256700
2012-10-07 18:30:59,258 - DEBUG - Taking top 8 variants by coverage in window 9:99256702-99256705
2012-10-07 18:30:59,705 - DEBUG - Taking top 8 variants by coverage in window 9:99261296-99261299
2012-10-07 18:30:59,807 - DEBUG - Taking top 8 variants by coverage in window 9:99261452-99261453
2012-10-07 18:30:59,817 - DEBUG - Taking top 8 variants by coverage in window 9:99261456-99261457
2012-10-07 18:30:59,854 - DEBUG - Taking top 8 variants by coverage in window 9:99261558-99261559
2012-10-07 18:30:59,914 - DEBUG - Taking top 8 variants by coverage in window 9:99261757-99261760
2012-10-07 18:31:00,264 - DEBUG - Taking top 8 variants by coverage in window 9:99264267-99264268
2012-10-07 18:31:00,549 - DEBUG - Taking top 8 variants by coverage in window 9:99264831-99264841
2012-10-07 18:31:00,890 - DEBUG - Taking top 8 variants by coverage in window 9:99266340-99266341
2012-10-07 18:31:00,974 - DEBUG - Taking top 8 variants by coverage in window 9:99266409-99266410
2012-10-07 18:31:01,213 - DEBUG - Taking top 8 variants by coverage in window 9:99267441-99267443
2012-10-07 18:31:01,308 - DEBUG - Taking top 8 variants by coverage in window 9:99268710-99268711
2012-10-07 18:31:01,370 - DEBUG - Taking top 8 variants by coverage in window 9:99269028-99269033
2012-10-07 18:31:01,456 - DEBUG - Taking top 8 variants by coverage in window 9:99269416-99269422
2012-10-07 18:31:01,831 - DEBUG - Taking top 8 variants by coverage in window 9:99272420-99272423
2012-10-07 18:31:03,579 - DEBUG - Taking top 8 variants by coverage in window 9:99284821-99284831
2012-10-07 18:31:04,152 - DEBUG - Taking top 8 variants by coverage in window 9:99293028-99293029
2012-10-07 18:31:04,182 - DEBUG - Taking top 8 variants by coverage in window 9:99293091-99293092
2012-10-07 18:31:05,585 - DEBUG - Taking top 8 variants by coverage in window 9:99309354-99309356
2012-10-07 18:31:06,211 - DEBUG - Taking top 8 variants by coverage in window 9:99314749-99314750
2012-10-07 18:31:06,524 - DEBUG - Taking top 8 variants by coverage in window 9:99319840-99319841
2012-10-07 18:31:08,362 - DEBUG - Taking top 8 variants by coverage in window 9:99343520-99343521
2012-10-07 18:31:08,757 - DEBUG - Taking top 8 variants by coverage in window 9:99352079-99352080
2012-10-07 18:31:08,921 - DEBUG - Taking top 8 variants by coverage in window 9:99355189-99355190
2012-10-07 18:31:08,931 - DEBUG - Taking top 8 variants by coverage in window 9:99355191-99355192
2012-10-07 18:31:09,049 - DEBUG - Taking top 8 variants by coverage in window 9:99355203-99355204
2012-10-07 18:31:09,060 - DEBUG - Taking top 8 variants by coverage in window 9:99355205-99355206
2012-10-07 18:31:09,200 - DEBUG - Taking top 8 variants by coverage in window 9:99356232-99356242
2012-10-07 18:31:09,329 - DEBUG - Taking top 8 variants by coverage in window 9:99358535-99358540
2012-10-07 18:31:09,641 - DEBUG - Taking top 8 variants by coverage in window 9:99360763-99360764
2012-10-07 18:31:09,660 - DEBUG - Taking top 8 variants by coverage in window 9:99360776-99360777
2012-10-07 18:31:10,043 - DEBUG - Taking top 8 variants by coverage in window 9:99363549-99363556
2012-10-07 18:31:10,060 - DEBUG - Taking top 8 variants by coverage in window 9:99363557-99363558
2012-10-07 18:31:10,359 - DEBUG - Taking top 8 variants by coverage in window 9:99367741-99367747
2012-10-07 18:31:10,891 - DEBUG - Taking top 8 variants by coverage in window 9:99372996-99372999
2012-10-07 18:31:11,137 - DEBUG - Taking top 8 variants by coverage in window 9:99373199-99373200
2012-10-07 18:31:11,686 - DEBUG - Taking top 8 variants by coverage in window 9:99375218-99375219
2012-10-07 18:31:12,264 - DEBUG - Taking top 8 variants by coverage in window 9:99386346-99386348
2012-10-07 18:31:12,602 - DEBUG - Taking top 8 variants by coverage in window 9:99389433-99389434
2012-10-07 18:31:13,615 - DEBUG - Taking top 8 variants by coverage in window 9:99405192-99405193
2012-10-07 18:31:13,890 - DEBUG - Taking top 8 variants by coverage in window 9:99408263-99408264
2012-10-07 18:31:13,965 - DEBUG - Taking top 8 variants by coverage in window 9:99408293-99408295
2012-10-07 18:31:14,245 - DEBUG - Taking top 8 variants by coverage in window 9:99414168-99414169
2012-10-07 18:31:14,630 - DEBUG - Taking top 8 variants by coverage in window 9:99423226-99423233
2012-10-07 18:31:15,143 - DEBUG - Taking top 8 variants by coverage in window 9:99434351-99434354
2012-10-07 18:31:15,509 - DEBUG - Taking top 8 variants by coverage in window 9:99437254-99437255
2012-10-07 18:31:15,727 - DEBUG - Taking top 8 variants by coverage in window 9:99438897-99438898
2012-10-07 18:31:15,918 - DEBUG - Taking top 8 variants by coverage in window 9:99441864-99441865
2012-10-07 18:31:16,155 - DEBUG - Taking top 8 variants by coverage in window 9:99443566-99443567
2012-10-07 18:31:16,354 - DEBUG - Taking top 8 variants by coverage in window 9:99446773-99446777
2012-10-07 18:31:16,489 - DEBUG - Taking top 8 variants by coverage in window 9:99448346-99448366
2012-10-07 18:31:16,954 - DEBUG - Taking top 8 variants by coverage in window 9:99454264-99454268
2012-10-07 18:31:17,094 - DEBUG - Taking top 8 variants by coverage in window 9:99455893-99455895
2012-10-07 18:31:17,397 - DEBUG - Taking top 8 variants by coverage in window 9:99459910-99459919
2012-10-07 18:31:17,460 - DEBUG - Taking top 8 variants by coverage in window 9:99460977-99460978
2012-10-07 18:31:17,651 - DEBUG - Taking top 8 variants by coverage in window 9:99466055-99466056
2012-10-07 18:31:18,121 - DEBUG - Taking top 8 variants by coverage in window 9:99473299-99473307
2012-10-07 18:31:19,100 - DEBUG - Taking top 8 variants by coverage in window 9:99488952-99488953
2012-10-07 18:31:20,498 - DEBUG - Taking top 8 variants by coverage in window 9:99502312-99502313
2012-10-07 18:31:20,666 - DEBUG - Taking top 8 variants by coverage in window 9:99503967-99503968
2012-10-07 18:31:21,128 - DEBUG - Taking top 8 variants by coverage in window 9:99507864-99507872
2012-10-07 18:31:23,078 - DEBUG - Taking top 8 variants by coverage in window 9:99534620-99534622
2012-10-07 18:31:23,201 - DEBUG - Taking top 8 variants by coverage in window 9:99536005-99536006
2012-10-07 18:31:23,323 - DEBUG - Taking top 8 variants by coverage in window 9:99536038-99536039
2012-10-07 18:31:23,445 - DEBUG - Taking top 8 variants by coverage in window 9:99536863-99536865
2012-10-07 18:31:24,096 - DEBUG - Taking top 8 variants by coverage in window 9:99545162-99545163
2012-10-07 18:31:24,385 - DEBUG - Taking top 8 variants by coverage in window 9:99547093-99547094
2012-10-07 18:31:24,746 - DEBUG - Taking top 8 variants by coverage in window 9:99550804-99550811
2012-10-07 18:31:25,432 - DEBUG - Taking top 8 variants by coverage in window 9:99558587-99558597
2012-10-07 18:31:25,477 - DEBUG - Taking top 8 variants by coverage in window 9:99558620-99558621
2012-10-07 18:31:26,168 - DEBUG - Taking top 8 variants by coverage in window 9:99565453-99565454
2012-10-07 18:31:26,290 - DEBUG - Taking top 8 variants by coverage in window 9:99567004-99567005
2012-10-07 18:31:27,043 - DEBUG - Taking top 8 variants by coverage in window 9:99575835-99575840
2012-10-07 18:31:27,371 - DEBUG - Taking top 8 variants by coverage in window 9:99581758-99581759
2012-10-07 18:31:27,576 - DEBUG - Taking top 8 variants by coverage in window 9:99584428-99584429
2012-10-07 18:31:28,457 - DEBUG - Taking top 8 variants by coverage in window 9:99593912-99593914
2012-10-07 18:31:29,071 - DEBUG - Taking top 8 variants by coverage in window 9:99597037-99597039
2012-10-07 18:31:29,112 - DEBUG - Taking top 8 variants by coverage in window 9:99597117-99597120
2012-10-07 18:31:29,704 - DEBUG - Taking top 8 variants by coverage in window 9:99601661-99601667
2012-10-07 18:31:32,174 - DEBUG - Taking top 8 variants by coverage in window 9:99624299-99624300
2012-10-07 18:31:32,978 - DEBUG - Taking top 8 variants by coverage in window 9:99634507-99634508
2012-10-07 18:31:33,012 - DEBUG - Taking top 8 variants by coverage in window 9:99634815-99634816
2012-10-07 18:31:33,023 - DEBUG - Taking top 8 variants by coverage in window 9:99634831-99634832
2012-10-07 18:31:33,755 - DEBUG - Taking top 8 variants by coverage in window 9:99650134-99650135
2012-10-07 18:31:33,867 - DEBUG - Taking top 8 variants by coverage in window 9:99650222-99650226
2012-10-07 18:31:33,882 - DEBUG - Taking top 8 variants by coverage in window 9:99650250-99650251
2012-10-07 18:31:33,941 - DEBUG - Taking top 8 variants by coverage in window 9:99650654-99650655
2012-10-07 18:31:34,129 - DEBUG - Taking top 8 variants by coverage in window 9:99653912-99653913
2012-10-07 18:31:34,340 - DEBUG - Taking top 8 variants by coverage in window 9:99664744-99664745
2012-10-07 18:31:34,476 - DEBUG - Taking top 8 variants by coverage in window 9:99665906-99665907
2012-10-07 18:31:34,623 - DEBUG - Taking top 8 variants by coverage in window 9:99669853-99669860
2012-10-07 18:31:34,998 - DEBUG - Taking top 8 variants by coverage in window 9:99679921-99679922
2012-10-07 18:31:35,348 - DEBUG - Taking top 8 variants by coverage in window 9:99682208-99682209
2012-10-07 18:31:35,363 - DEBUG - Taking top 8 variants by coverage in window 9:99682212-99682213
2012-10-07 18:31:35,986 - DEBUG - Taking top 8 variants by coverage in window 9:99686586-99686587
2012-10-07 18:31:36,406 - DEBUG - Taking top 8 variants by coverage in window 9:99689904-99689905
2012-10-07 18:31:36,857 - DEBUG - Taking top 8 variants by coverage in window 9:99699104-99699105
2012-10-07 18:31:37,187 - DEBUG - Taking top 8 variants by coverage in window 9:99703438-99703439
2012-10-07 18:31:37,449 - DEBUG - Taking top 8 variants by coverage in window 9:99706152-99706156
2012-10-07 18:31:37,472 - DEBUG - Taking top 8 variants by coverage in window 9:99706157-99706158
2012-10-07 18:31:37,632 - DEBUG - Taking top 8 variants by coverage in window 9:99706874-99706878
2012-10-07 18:31:38,396 - DEBUG - Taking top 8 variants by coverage in window 9:99711866-99711870
2012-10-07 18:31:38,717 - DEBUG - Taking top 8 variants by coverage in window 9:99714814-99714815
2012-10-07 18:31:38,919 - DEBUG - Taking top 8 variants by coverage in window 9:99717005-99717006
2012-10-07 18:31:39,268 - DEBUG - Taking top 8 variants by coverage in window 9:99718969-99718970
2012-10-07 18:31:39,832 - DEBUG - Taking top 8 variants by coverage in window 9:99725183-99725184
2012-10-07 18:31:40,890 - DEBUG - Taking top 8 variants by coverage in window 9:99736875-99736876
2012-10-07 18:31:40,906 - DEBUG - Taking top 8 variants by coverage in window 9:99736879-99736880
2012-10-07 18:31:41,422 - DEBUG - Taking top 8 variants by coverage in window 9:99741887-99741888
2012-10-07 18:31:42,252 - DEBUG - Taking top 8 variants by coverage in window 9:99751199-99751200
2012-10-07 18:31:42,273 - DEBUG - Taking top 8 variants by coverage in window 9:99751432-99751433
2012-10-07 18:31:43,065 - DEBUG - Taking top 8 variants by coverage in window 9:99757692-99757693
2012-10-07 18:31:43,495 - DEBUG - Taking top 8 variants by coverage in window 9:99765358-99765364
2012-10-07 18:31:44,344 - DEBUG - Taking top 8 variants by coverage in window 9:99781506-99781508
2012-10-07 18:31:44,458 - DEBUG - Taking top 8 variants by coverage in window 9:99783434-99783438
2012-10-07 18:31:44,575 - DEBUG - Taking top 8 variants by coverage in window 9:99784216-99784217
2012-10-07 18:31:45,197 - DEBUG - Taking top 8 variants by coverage in window 9:99795517-99795518
2012-10-07 18:31:46,811 - DEBUG - Taking top 8 variants by coverage in window 9:99814714-99814715
2012-10-07 18:31:46,932 - DEBUG - Taking top 8 variants by coverage in window 9:99815200-99815201
2012-10-07 18:31:49,288 - DEBUG - Taking top 8 variants by coverage in window 9:99848304-99848305
2012-10-07 18:31:49,297 - DEBUG - Taking top 8 variants by coverage in window 9:99848318-99848319
2012-10-07 18:31:49,637 - DEBUG - Taking top 8 variants by coverage in window 9:99852260-99852261
2012-10-07 18:31:49,720 - DEBUG - Taking top 8 variants by coverage in window 9:99853792-99853793
2012-10-07 18:31:49,751 - DEBUG - Taking top 8 variants by coverage in window 9:99854582-99854583
2012-10-07 18:31:50,060 - DEBUG - Taking top 8 variants by coverage in window 9:99860968-99860969
2012-10-07 18:31:50,349 - DEBUG - Taking top 8 variants by coverage in window 9:99864608-99864609
2012-10-07 18:31:50,427 - DEBUG - Taking top 8 variants by coverage in window 9:99865731-99865732
2012-10-07 18:31:50,432 - DEBUG - Taking top 8 variants by coverage in window 9:99865732-99865735
2012-10-07 18:31:50,476 - DEBUG - Taking top 8 variants by coverage in window 9:99865885-99865886
2012-10-07 18:31:50,503 - DEBUG - Taking top 8 variants by coverage in window 9:99866541-99866542
2012-10-07 18:31:50,854 - DEBUG - Taking top 8 variants by coverage in window 9:99869454-99869455
2012-10-07 18:31:51,014 - DEBUG - Taking top 8 variants by coverage in window 9:99871639-99871640
2012-10-07 18:31:51,424 - DEBUG - Taking top 8 variants by coverage in window 9:99875203-99875204
2012-10-07 18:31:51,542 - DEBUG - Taking top 8 variants by coverage in window 9:99876539-99876540
2012-10-07 18:31:51,554 - DEBUG - Taking top 8 variants by coverage in window 9:99876570-99876571
2012-10-07 18:31:51,567 - DEBUG - Taking top 8 variants by coverage in window 9:99876579-99876580
2012-10-07 18:31:51,852 - DEBUG - Taking top 8 variants by coverage in window 9:99880868-99880869
2012-10-07 18:31:51,865 - DEBUG - Taking top 8 variants by coverage in window 9:99881031-99881043
2012-10-07 18:31:52,007 - DEBUG - Taking top 8 variants by coverage in window 9:99882026-99882027
2012-10-07 18:31:52,273 - DEBUG - Taking top 8 variants by coverage in window 9:99886387-99886389
2012-10-07 18:31:52,683 - DEBUG - Taking top 8 variants by coverage in window 9:99893963-99893975
2012-10-07 18:31:52,901 - DEBUG - Taking top 8 variants by coverage in window 9:99897075-99897076
2012-10-07 18:31:53,802 - DEBUG - Taking top 8 variants by coverage in window 9:99906740-99906741
2012-10-07 18:31:54,128 - DEBUG - Taking top 8 variants by coverage in window 9:99918103-99918104
2012-10-07 18:31:54,283 - DEBUG - Taking top 8 variants by coverage in window 9:99921867-99921868
2012-10-07 18:31:55,959 - DEBUG - Taking top 8 variants by coverage in window 9:99941183-99941184
2012-10-07 18:31:55,991 - DEBUG - Taking top 8 variants by coverage in window 9:99941197-99941198
2012-10-07 18:31:57,290 - DEBUG - Taking top 8 variants by coverage in window 9:99960019-99960022
2012-10-07 18:31:57,755 - DEBUG - Taking top 8 variants by coverage in window 9:99967464-99967467
2012-10-07 18:31:58,074 - DEBUG - Taking top 8 variants by coverage in window 9:99970369-99970370
2012-10-07 18:31:58,135 - DEBUG - Taking top 8 variants by coverage in window 9:99970694-99970695
2012-10-07 18:31:58,172 - DEBUG - Taking top 8 variants by coverage in window 9:99970723-99970724
2012-10-07 18:31:59,445 - DEBUG - Taking top 8 variants by coverage in window 9:99994094-99994096
2012-10-07 18:32:00,754 - DEBUG - Read 89627 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 18:32:00,980 - DEBUG - Read 96119 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 18:32:01,226 - DEBUG - Read 115184 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 18:32:01,500 - DEBUG - Read 113160 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 18:32:01,757 - DEBUG - Read 107681 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 18:32:01,990 - DEBUG - Read 102509 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 18:32:02,234 - DEBUG - Read 109651 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 18:32:02,469 - DEBUG - Read 97219 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 18:32:02,690 - DEBUG - Read 92539 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 18:32:02,919 - DEBUG - Read 95566 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 18:32:03,165 - DEBUG - Read 105015 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 18:32:03,379 - DEBUG - Read 93000 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 18:32:03,600 - DEBUG - Read 93281 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 18:32:03,831 - DEBUG - Read 105357 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 18:32:04,082 - DEBUG - Read 113174 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 18:32:04,289 - DEBUG - Read 85315 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 18:32:04,527 - DEBUG - Read 109377 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 18:32:04,770 - DEBUG - Read 104800 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 18:32:04,973 - DEBUG - Read 88280 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 18:32:05,194 - DEBUG - Read 90267 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 18:32:05,281 - DEBUG - Detected 21131 variants in 89627 reads
2012-10-07 18:32:05,432 - DEBUG - Detected 32785 variants in 96119 reads
2012-10-07 18:32:05,627 - DEBUG - Detected 39333 variants in 115184 reads
2012-10-07 18:32:05,848 - DEBUG - Detected 46000 variants in 113160 reads
2012-10-07 18:32:06,101 - DEBUG - Detected 52436 variants in 107681 reads
2012-10-07 18:32:06,374 - DEBUG - Detected 58842 variants in 102509 reads
2012-10-07 18:32:06,685 - DEBUG - Detected 71309 variants in 109651 reads
2012-10-07 18:32:07,044 - DEBUG - Detected 77750 variants in 97219 reads
2012-10-07 18:32:07,433 - DEBUG - Detected 83169 variants in 92539 reads
2012-10-07 18:32:07,874 - DEBUG - Detected 88281 variants in 95566 reads
2012-10-07 18:32:08,319 - DEBUG - Detected 95051 variants in 105015 reads
2012-10-07 18:32:08,780 - DEBUG - Detected 99015 variants in 93000 reads
2012-10-07 18:32:09,259 - DEBUG - Detected 102745 variants in 93281 reads
2012-10-07 18:32:09,766 - DEBUG - Detected 106770 variants in 105357 reads
2012-10-07 18:32:10,294 - DEBUG - Detected 114014 variants in 113174 reads
2012-10-07 18:32:10,873 - DEBUG - Detected 117381 variants in 85315 reads
2012-10-07 18:32:11,446 - DEBUG - Detected 121206 variants in 109377 reads
2012-10-07 18:32:12,042 - DEBUG - Detected 126561 variants in 104800 reads
2012-10-07 18:32:12,645 - DEBUG - Detected 130814 variants in 88280 reads
2012-10-07 18:32:13,266 - DEBUG - Detected 134843 variants in 90267 reads
2012-10-07 18:32:14,523 - DEBUG - Taking top 8 variants by coverage in window 9:100006798-100006799
2012-10-07 18:32:14,805 - DEBUG - Taking top 8 variants by coverage in window 9:100010377-100010378
2012-10-07 18:32:14,849 - DEBUG - Taking top 8 variants by coverage in window 9:100011343-100011344
2012-10-07 18:32:14,999 - DEBUG - Taking top 8 variants by coverage in window 9:100013123-100013124
2012-10-07 18:32:15,023 - DEBUG - Taking top 8 variants by coverage in window 9:100013142-100013143
2012-10-07 18:32:15,619 - DEBUG - Taking top 8 variants by coverage in window 9:100018680-100018692
2012-10-07 18:32:15,802 - DEBUG - Taking top 8 variants by coverage in window 9:100018746-100018748
2012-10-07 18:32:16,484 - DEBUG - Taking top 8 variants by coverage in window 9:100028111-100028112
2012-10-07 18:32:16,994 - DEBUG - Taking top 8 variants by coverage in window 9:100037041-100037042
2012-10-07 18:32:17,092 - DEBUG - Taking top 8 variants by coverage in window 9:100038589-100038590
2012-10-07 18:32:17,415 - DEBUG - Taking top 8 variants by coverage in window 9:100044307-100044308
2012-10-07 18:32:17,815 - DEBUG - Taking top 8 variants by coverage in window 9:100048134-100048139
2012-10-07 18:32:18,022 - DEBUG - Taking top 8 variants by coverage in window 9:100049462-100049469
2012-10-07 18:32:19,614 - DEBUG - Taking top 8 variants by coverage in window 9:100072598-100072600
2012-10-07 18:32:20,038 - DEBUG - Taking top 8 variants by coverage in window 9:100077345-100077346
2012-10-07 18:32:20,256 - DEBUG - Taking top 8 variants by coverage in window 9:100079287-100079288
2012-10-07 18:32:20,274 - DEBUG - Taking top 8 variants by coverage in window 9:100079291-100079292
2012-10-07 18:32:20,296 - DEBUG - Taking top 8 variants by coverage in window 9:100079295-100079296
2012-10-07 18:32:20,571 - DEBUG - Taking top 8 variants by coverage in window 9:100081683-100081684
2012-10-07 18:32:21,484 - DEBUG - Taking top 8 variants by coverage in window 9:100092963-100092964
2012-10-07 18:32:22,293 - DEBUG - Taking top 8 variants by coverage in window 9:100100221-100100224
2012-10-07 18:32:22,818 - DEBUG - Taking top 8 variants by coverage in window 9:100104816-100104817
2012-10-07 18:32:24,318 - DEBUG - Taking top 8 variants by coverage in window 9:100126299-100126300
2012-10-07 18:32:24,652 - DEBUG - Taking top 8 variants by coverage in window 9:100130607-100130611
2012-10-07 18:32:24,697 - DEBUG - Taking top 8 variants by coverage in window 9:100130637-100130638
2012-10-07 18:32:24,869 - DEBUG - Taking top 8 variants by coverage in window 9:100132145-100132146
2012-10-07 18:32:24,906 - DEBUG - Taking top 8 variants by coverage in window 9:100132846-100132847
2012-10-07 18:32:25,288 - DEBUG - Taking top 8 variants by coverage in window 9:100138041-100138042
2012-10-07 18:32:25,996 - DEBUG - Taking top 8 variants by coverage in window 9:100146169-100146170
2012-10-07 18:32:26,008 - DEBUG - Taking top 8 variants by coverage in window 9:100146180-100146181
2012-10-07 18:32:27,156 - DEBUG - Taking top 8 variants by coverage in window 9:100160617-100160618
2012-10-07 18:32:28,114 - DEBUG - Taking top 8 variants by coverage in window 9:100177441-100177442
2012-10-07 18:32:28,403 - DEBUG - Taking top 8 variants by coverage in window 9:100180782-100180783
2012-10-07 18:32:28,539 - DEBUG - Taking top 8 variants by coverage in window 9:100181540-100181541
2012-10-07 18:32:29,043 - DEBUG - Taking top 8 variants by coverage in window 9:100187981-100187982
2012-10-07 18:32:29,052 - DEBUG - Taking top 8 variants by coverage in window 9:100187982-100187983
2012-10-07 18:32:29,123 - DEBUG - Taking top 8 variants by coverage in window 9:100188276-100188277
2012-10-07 18:32:29,193 - DEBUG - Taking top 8 variants by coverage in window 9:100188912-100188913
2012-10-07 18:32:30,430 - DEBUG - Taking top 8 variants by coverage in window 9:100201284-100201286
2012-10-07 18:32:30,685 - DEBUG - Taking top 8 variants by coverage in window 9:100204809-100204811
2012-10-07 18:32:32,825 - DEBUG - Taking top 8 variants by coverage in window 9:100234264-100234272
2012-10-07 18:32:33,202 - DEBUG - Taking top 8 variants by coverage in window 9:100239383-100239384
2012-10-07 18:32:35,072 - DEBUG - Taking top 8 variants by coverage in window 9:100262809-100262810
2012-10-07 18:32:36,285 - DEBUG - Taking top 8 variants by coverage in window 9:100274863-100274864
2012-10-07 18:32:36,298 - DEBUG - Taking top 8 variants by coverage in window 9:100274865-100274867
2012-10-07 18:32:36,406 - DEBUG - Taking top 8 variants by coverage in window 9:100275786-100275793
2012-10-07 18:32:37,134 - DEBUG - Taking top 8 variants by coverage in window 9:100283195-100283196
2012-10-07 18:32:37,155 - DEBUG - Taking top 8 variants by coverage in window 9:100283326-100283327
2012-10-07 18:32:37,330 - DEBUG - Taking top 8 variants by coverage in window 9:100284698-100284699
2012-10-07 18:32:38,187 - DEBUG - Taking top 8 variants by coverage in window 9:100289451-100289452
2012-10-07 18:32:38,266 - DEBUG - Taking top 8 variants by coverage in window 9:100289487-100289488
2012-10-07 18:32:38,457 - DEBUG - Taking top 8 variants by coverage in window 9:100290526-100290527
2012-10-07 18:32:39,758 - DEBUG - Taking top 8 variants by coverage in window 9:100301951-100301952
2012-10-07 18:32:39,897 - DEBUG - Taking top 8 variants by coverage in window 9:100302366-100302367
2012-10-07 18:32:40,655 - DEBUG - Taking top 8 variants by coverage in window 9:100308046-100308050
2012-10-07 18:32:42,107 - DEBUG - Taking top 8 variants by coverage in window 9:100323577-100323578
2012-10-07 18:32:42,164 - DEBUG - Taking top 8 variants by coverage in window 9:100323631-100323632
2012-10-07 18:32:42,616 - DEBUG - Taking top 8 variants by coverage in window 9:100324534-100324544
2012-10-07 18:32:42,680 - DEBUG - Taking top 8 variants by coverage in window 9:100324547-100324548
2012-10-07 18:32:43,356 - DEBUG - Taking top 8 variants by coverage in window 9:100330130-100330131
2012-10-07 18:32:43,651 - DEBUG - Taking top 8 variants by coverage in window 9:100332966-100332983
2012-10-07 18:32:44,156 - DEBUG - Taking top 8 variants by coverage in window 9:100337464-100337465
2012-10-07 18:32:44,937 - DEBUG - Taking top 8 variants by coverage in window 9:100345874-100345875
2012-10-07 18:32:45,821 - DEBUG - Taking top 8 variants by coverage in window 9:100352618-100352619
2012-10-07 18:32:45,883 - DEBUG - Taking top 8 variants by coverage in window 9:100353708-100353712
2012-10-07 18:32:46,578 - DEBUG - Taking top 8 variants by coverage in window 9:100360831-100360832
2012-10-07 18:32:47,360 - DEBUG - Taking top 8 variants by coverage in window 9:100365086-100365089
2012-10-07 18:32:47,586 - DEBUG - Taking top 8 variants by coverage in window 9:100365305-100365306
2012-10-07 18:32:48,663 - DEBUG - Taking top 8 variants by coverage in window 9:100379248-100379251
2012-10-07 18:32:48,821 - DEBUG - Taking top 8 variants by coverage in window 9:100380156-100380157
2012-10-07 18:32:49,197 - DEBUG - Taking top 8 variants by coverage in window 9:100383774-100383775
2012-10-07 18:32:49,755 - DEBUG - Taking top 8 variants by coverage in window 9:100391445-100391446
2012-10-07 18:32:51,441 - DEBUG - Taking top 8 variants by coverage in window 9:100421657-100421658
2012-10-07 18:32:52,300 - DEBUG - Taking top 8 variants by coverage in window 9:100434196-100434197
2012-10-07 18:32:52,599 - DEBUG - Taking top 8 variants by coverage in window 9:100437360-100437362
2012-10-07 18:32:52,657 - DEBUG - Taking top 8 variants by coverage in window 9:100437842-100437843
2012-10-07 18:32:53,480 - DEBUG - Taking top 8 variants by coverage in window 9:100451775-100451776
2012-10-07 18:32:53,954 - DEBUG - Taking top 8 variants by coverage in window 9:100457445-100457447
2012-10-07 18:32:54,233 - DEBUG - Taking top 8 variants by coverage in window 9:100460934-100460935
2012-10-07 18:32:54,334 - DEBUG - Taking top 8 variants by coverage in window 9:100462265-100462266
2012-10-07 18:32:54,599 - DEBUG - Taking top 8 variants by coverage in window 9:100464242-100464243
2012-10-07 18:32:54,767 - DEBUG - Taking top 8 variants by coverage in window 9:100465046-100465047
2012-10-07 18:32:56,026 - DEBUG - Taking top 8 variants by coverage in window 9:100477145-100477146
2012-10-07 18:32:57,377 - DEBUG - Taking top 8 variants by coverage in window 9:100492425-100492426
2012-10-07 18:32:57,391 - DEBUG - Taking top 8 variants by coverage in window 9:100492432-100492433
2012-10-07 18:32:57,662 - DEBUG - Taking top 8 variants by coverage in window 9:100495846-100495847
2012-10-07 18:32:57,673 - DEBUG - Taking top 8 variants by coverage in window 9:100495847-100495849
2012-10-07 18:32:58,090 - DEBUG - Taking top 8 variants by coverage in window 9:100501588-100501590
2012-10-07 18:32:58,135 - DEBUG - Taking top 8 variants by coverage in window 9:100501609-100501610
2012-10-07 18:32:58,390 - DEBUG - Taking top 8 variants by coverage in window 9:100505927-100505928
2012-10-07 18:32:59,244 - DEBUG - Taking top 8 variants by coverage in window 9:100515698-100515701
2012-10-07 18:33:00,515 - DEBUG - Taking top 8 variants by coverage in window 9:100522723-100522724
2012-10-07 18:33:00,525 - DEBUG - Taking top 8 variants by coverage in window 9:100522732-100522733
2012-10-07 18:33:00,788 - DEBUG - Taking top 8 variants by coverage in window 9:100527608-100527609
2012-10-07 18:33:00,866 - DEBUG - Taking top 8 variants by coverage in window 9:100529145-100529153
2012-10-07 18:33:01,436 - DEBUG - Taking top 8 variants by coverage in window 9:100535756-100535757
2012-10-07 18:33:01,799 - DEBUG - Taking top 8 variants by coverage in window 9:100540604-100540605
2012-10-07 18:33:01,882 - DEBUG - Taking top 8 variants by coverage in window 9:100541603-100541604
2012-10-07 18:33:02,255 - DEBUG - Taking top 8 variants by coverage in window 9:100549709-100549710
2012-10-07 18:33:02,442 - DEBUG - Taking top 8 variants by coverage in window 9:100551434-100551435
2012-10-07 18:33:02,661 - DEBUG - Taking top 8 variants by coverage in window 9:100557394-100557395
2012-10-07 18:33:02,907 - DEBUG - Taking top 8 variants by coverage in window 9:100565794-100565795
2012-10-07 18:33:03,752 - DEBUG - Taking top 8 variants by coverage in window 9:100598185-100598190
2012-10-07 18:33:04,739 - DEBUG - Taking top 8 variants by coverage in window 9:100622488-100622489
2012-10-07 18:33:05,092 - DEBUG - Taking top 8 variants by coverage in window 9:100632702-100632703
2012-10-07 18:33:05,326 - DEBUG - Taking top 8 variants by coverage in window 9:100639006-100639020
2012-10-07 18:33:07,714 - DEBUG - Taking top 8 variants by coverage in window 9:100695379-100695380
2012-10-07 18:33:07,726 - DEBUG - Taking top 8 variants by coverage in window 9:100695384-100695385
2012-10-07 18:33:07,740 - DEBUG - Taking top 8 variants by coverage in window 9:100695387-100695389
2012-10-07 18:33:07,841 - DEBUG - Taking top 8 variants by coverage in window 9:100695588-100695590
2012-10-07 18:33:12,034 - DEBUG - Taking top 8 variants by coverage in window 9:100795905-100795913
2012-10-07 18:33:12,283 - DEBUG - Taking top 8 variants by coverage in window 9:100801035-100801041
2012-10-07 18:33:12,974 - DEBUG - Taking top 8 variants by coverage in window 9:100813356-100813357
2012-10-07 18:33:12,985 - DEBUG - Taking top 8 variants by coverage in window 9:100813386-100813387
2012-10-07 18:33:13,681 - DEBUG - Taking top 8 variants by coverage in window 9:100829085-100829087
2012-10-07 18:33:14,195 - DEBUG - Taking top 8 variants by coverage in window 9:100840735-100840737
2012-10-07 18:33:14,433 - DEBUG - Taking top 8 variants by coverage in window 9:100844175-100844176
2012-10-07 18:33:14,753 - DEBUG - Taking top 8 variants by coverage in window 9:100849520-100849528
2012-10-07 18:33:16,388 - DEBUG - Taking top 8 variants by coverage in window 9:100878207-100878208
2012-10-07 18:33:16,500 - DEBUG - Taking top 8 variants by coverage in window 9:100878783-100878784
2012-10-07 18:33:16,612 - DEBUG - Taking top 8 variants by coverage in window 9:100878879-100878880
2012-10-07 18:33:17,388 - DEBUG - Taking top 8 variants by coverage in window 9:100885787-100885788
2012-10-07 18:33:17,538 - DEBUG - Taking top 8 variants by coverage in window 9:100886907-100886909
2012-10-07 18:33:17,563 - DEBUG - Taking top 8 variants by coverage in window 9:100886917-100886918
2012-10-07 18:33:18,481 - DEBUG - Taking top 8 variants by coverage in window 9:100895224-100895225
2012-10-07 18:33:20,150 - DEBUG - Taking top 8 variants by coverage in window 9:100909170-100909171
2012-10-07 18:33:20,904 - DEBUG - Taking top 8 variants by coverage in window 9:100914763-100914767
2012-10-07 18:33:22,278 - DEBUG - Taking top 8 variants by coverage in window 9:100927649-100927655
2012-10-07 18:33:22,334 - DEBUG - Taking top 8 variants by coverage in window 9:100927677-100927680
2012-10-07 18:33:23,103 - DEBUG - Taking top 8 variants by coverage in window 9:100935619-100935630
2012-10-07 18:33:23,464 - DEBUG - Taking top 8 variants by coverage in window 9:100941747-100941748
2012-10-07 18:33:23,472 - DEBUG - Taking top 8 variants by coverage in window 9:100941777-100941778
2012-10-07 18:33:23,495 - DEBUG - Taking top 8 variants by coverage in window 9:100941798-100941802
2012-10-07 18:33:23,953 - DEBUG - Taking top 8 variants by coverage in window 9:100945663-100945664
2012-10-07 18:33:24,337 - DEBUG - Taking top 8 variants by coverage in window 9:100949372-100949373
2012-10-07 18:33:24,460 - DEBUG - Taking top 8 variants by coverage in window 9:100952692-100952693
2012-10-07 18:33:24,698 - DEBUG - Taking top 8 variants by coverage in window 9:100956829-100956832
2012-10-07 18:33:25,027 - DEBUG - Taking top 8 variants by coverage in window 9:100964755-100964756
2012-10-07 18:33:25,388 - DEBUG - Taking top 8 variants by coverage in window 9:100969479-100969480
2012-10-07 18:33:25,853 - DEBUG - Taking top 8 variants by coverage in window 9:100978449-100978450
2012-10-07 18:33:26,063 - DEBUG - Taking top 8 variants by coverage in window 9:100982012-100982013
2012-10-07 18:33:26,213 - DEBUG - Taking top 8 variants by coverage in window 9:100984016-100984017
2012-10-07 18:33:26,222 - DEBUG - Taking top 8 variants by coverage in window 9:100984017-100984018
2012-10-07 18:33:26,344 - DEBUG - Taking top 8 variants by coverage in window 9:100986886-100986887
2012-10-07 18:33:26,502 - DEBUG - Taking top 8 variants by coverage in window 9:100994280-100994281
2012-10-07 18:33:27,035 - DEBUG - Taking top 8 variants by coverage in window 9:100999811-100999812
2012-10-07 18:33:28,209 - DEBUG - Read 97253 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 18:33:28,453 - DEBUG - Read 105075 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 18:33:28,715 - DEBUG - Read 122483 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 18:33:29,004 - DEBUG - Read 121706 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 18:33:29,283 - DEBUG - Read 116562 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 18:33:29,531 - DEBUG - Read 110827 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 18:33:29,791 - DEBUG - Read 117438 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 18:33:30,048 - DEBUG - Read 106516 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 18:33:30,289 - DEBUG - Read 101772 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 18:33:30,535 - DEBUG - Read 102207 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 18:33:30,797 - DEBUG - Read 113324 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 18:33:31,026 - DEBUG - Read 101404 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 18:33:31,268 - DEBUG - Read 103861 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 18:33:31,512 - DEBUG - Read 112879 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 18:33:31,791 - DEBUG - Read 122827 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 18:33:32,019 - DEBUG - Read 94626 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 18:33:32,270 - DEBUG - Read 117008 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 18:33:32,531 - DEBUG - Read 113065 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 18:33:32,749 - DEBUG - Read 97268 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 18:33:32,988 - DEBUG - Read 97199 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 18:33:33,089 - DEBUG - Detected 21736 variants in 97253 reads
2012-10-07 18:33:33,248 - DEBUG - Detected 31362 variants in 105075 reads
2012-10-07 18:33:33,457 - DEBUG - Detected 41573 variants in 122483 reads
2012-10-07 18:33:33,699 - DEBUG - Detected 49299 variants in 121706 reads
2012-10-07 18:33:33,968 - DEBUG - Detected 55643 variants in 116562 reads
2012-10-07 18:33:34,260 - DEBUG - Detected 62048 variants in 110827 reads
2012-10-07 18:33:34,620 - DEBUG - Detected 76783 variants in 117438 reads
2012-10-07 18:33:35,008 - DEBUG - Detected 82641 variants in 106516 reads
2012-10-07 18:33:35,417 - DEBUG - Detected 88946 variants in 101772 reads
2012-10-07 18:33:35,846 - DEBUG - Detected 94067 variants in 102207 reads
2012-10-07 18:33:36,310 - DEBUG - Detected 99013 variants in 113324 reads
2012-10-07 18:33:36,783 - DEBUG - Detected 102792 variants in 101404 reads
2012-10-07 18:33:37,316 - DEBUG - Detected 107131 variants in 103861 reads
2012-10-07 18:33:37,834 - DEBUG - Detected 111310 variants in 112879 reads
2012-10-07 18:33:38,387 - DEBUG - Detected 118650 variants in 122827 reads
2012-10-07 18:33:38,948 - DEBUG - Detected 122692 variants in 94626 reads
2012-10-07 18:33:39,549 - DEBUG - Detected 126192 variants in 117008 reads
2012-10-07 18:33:40,207 - DEBUG - Detected 130488 variants in 113065 reads
2012-10-07 18:33:40,821 - DEBUG - Detected 134438 variants in 97268 reads
2012-10-07 18:33:41,448 - DEBUG - Detected 138544 variants in 97199 reads
2012-10-07 18:33:42,516 - DEBUG - Taking top 8 variants by coverage in window 9:101000103-101000104
2012-10-07 18:33:43,038 - DEBUG - Taking top 8 variants by coverage in window 9:101008936-101008937
2012-10-07 18:33:43,129 - DEBUG - Taking top 8 variants by coverage in window 9:101010443-101010444
2012-10-07 18:33:43,349 - DEBUG - Taking top 8 variants by coverage in window 9:101014263-101014264
2012-10-07 18:33:44,018 - DEBUG - Taking top 8 variants by coverage in window 9:101019836-101019837
2012-10-07 18:33:44,059 - DEBUG - Taking top 8 variants by coverage in window 9:101020021-101020022
2012-10-07 18:33:44,668 - DEBUG - Taking top 8 variants by coverage in window 9:101029418-101029419
2012-10-07 18:33:44,688 - DEBUG - Taking top 8 variants by coverage in window 9:101029421-101029422
2012-10-07 18:33:44,715 - DEBUG - Taking top 8 variants by coverage in window 9:101029437-101029438
2012-10-07 18:33:44,725 - DEBUG - Taking top 8 variants by coverage in window 9:101029438-101029439
2012-10-07 18:33:44,797 - DEBUG - Taking top 8 variants by coverage in window 9:101030323-101030324
2012-10-07 18:33:45,415 - DEBUG - Taking top 8 variants by coverage in window 9:101045982-101045983
2012-10-07 18:33:45,444 - DEBUG - Taking top 8 variants by coverage in window 9:101045988-101045991
2012-10-07 18:33:46,389 - DEBUG - Taking top 8 variants by coverage in window 9:101065331-101065332
2012-10-07 18:33:46,448 - DEBUG - Taking top 8 variants by coverage in window 9:101071958-101071959
2012-10-07 18:33:46,750 - DEBUG - Taking top 8 variants by coverage in window 9:101076358-101076359
2012-10-07 18:33:46,849 - DEBUG - Taking top 8 variants by coverage in window 9:101076410-101076411
2012-10-07 18:33:47,187 - DEBUG - Taking top 8 variants by coverage in window 9:101080092-101080093
2012-10-07 18:33:48,008 - DEBUG - Taking top 8 variants by coverage in window 9:101091636-101091637
2012-10-07 18:33:48,823 - DEBUG - Taking top 8 variants by coverage in window 9:101107203-101107204
2012-10-07 18:33:48,955 - DEBUG - Taking top 8 variants by coverage in window 9:101109240-101109241
2012-10-07 18:33:49,542 - DEBUG - Taking top 8 variants by coverage in window 9:101122912-101122914
2012-10-07 18:33:50,408 - DEBUG - Taking top 8 variants by coverage in window 9:101145130-101145131
2012-10-07 18:33:51,600 - DEBUG - Taking top 8 variants by coverage in window 9:101164070-101164073
2012-10-07 18:33:51,807 - DEBUG - Taking top 8 variants by coverage in window 9:101168925-101168926
2012-10-07 18:33:52,249 - DEBUG - Taking top 8 variants by coverage in window 9:101174801-101174802
2012-10-07 18:33:52,819 - DEBUG - Taking top 8 variants by coverage in window 9:101181596-101181599
2012-10-07 18:33:52,845 - DEBUG - Taking top 8 variants by coverage in window 9:101181609-101181610
2012-10-07 18:33:53,577 - DEBUG - Taking top 8 variants by coverage in window 9:101187610-101187611
2012-10-07 18:33:53,857 - DEBUG - Taking top 8 variants by coverage in window 9:101192765-101192766
2012-10-07 18:33:54,031 - DEBUG - Taking top 8 variants by coverage in window 9:101200666-101200667
2012-10-07 18:33:54,121 - DEBUG - Taking top 8 variants by coverage in window 9:101200742-101200743
2012-10-07 18:33:54,219 - DEBUG - Taking top 8 variants by coverage in window 9:101201062-101201063
2012-10-07 18:33:54,366 - DEBUG - Taking top 8 variants by coverage in window 9:101201391-101201392
2012-10-07 18:33:54,544 - DEBUG - Taking top 8 variants by coverage in window 9:101201649-101201650
2012-10-07 18:33:54,936 - DEBUG - Taking top 8 variants by coverage in window 9:101205534-101205535
2012-10-07 18:33:54,952 - DEBUG - Taking top 8 variants by coverage in window 9:101205577-101205578
2012-10-07 18:33:55,301 - DEBUG - Taking top 8 variants by coverage in window 9:101210556-101210557
2012-10-07 18:33:55,443 - DEBUG - Taking top 8 variants by coverage in window 9:101212172-101212173
2012-10-07 18:33:55,474 - DEBUG - Taking top 8 variants by coverage in window 9:101214060-101214061
2012-10-07 18:33:55,643 - DEBUG - Taking top 8 variants by coverage in window 9:101216115-101216116
2012-10-07 18:33:55,903 - DEBUG - Taking top 8 variants by coverage in window 9:101219763-101219765
2012-10-07 18:33:56,009 - DEBUG - Taking top 8 variants by coverage in window 9:101221107-101221108
2012-10-07 18:33:56,240 - DEBUG - Taking top 8 variants by coverage in window 9:101222747-101222752
2012-10-07 18:33:56,531 - DEBUG - Taking top 8 variants by coverage in window 9:101222818-101222822
2012-10-07 18:33:56,909 - DEBUG - Taking top 8 variants by coverage in window 9:101224169-101224170
2012-10-07 18:33:58,290 - DEBUG - Taking top 8 variants by coverage in window 9:101242612-101242613
2012-10-07 18:33:58,301 - DEBUG - Taking top 8 variants by coverage in window 9:101242630-101242631
2012-10-07 18:33:58,768 - DEBUG - Taking top 8 variants by coverage in window 9:101246967-101246970
2012-10-07 18:33:58,819 - DEBUG - Taking top 8 variants by coverage in window 9:101247195-101247209
2012-10-07 18:33:59,933 - DEBUG - Taking top 8 variants by coverage in window 9:101262820-101262821
2012-10-07 18:33:59,939 - DEBUG - Taking top 8 variants by coverage in window 9:101262821-101262822
2012-10-07 18:33:59,995 - DEBUG - Taking top 8 variants by coverage in window 9:101262981-101262984
2012-10-07 18:34:00,332 - DEBUG - Taking top 8 variants by coverage in window 9:101270719-101270720
2012-10-07 18:34:00,354 - DEBUG - Taking top 8 variants by coverage in window 9:101270751-101270752
2012-10-07 18:34:00,508 - DEBUG - Taking top 8 variants by coverage in window 9:101273064-101273065
2012-10-07 18:34:00,572 - DEBUG - Taking top 8 variants by coverage in window 9:101273797-101273798
2012-10-07 18:34:02,197 - DEBUG - Taking top 8 variants by coverage in window 9:101307878-101307879
2012-10-07 18:34:02,383 - DEBUG - Taking top 8 variants by coverage in window 9:101311294-101311295
2012-10-07 18:34:02,744 - DEBUG - Taking top 8 variants by coverage in window 9:101317125-101317126
2012-10-07 18:34:02,816 - DEBUG - Taking top 8 variants by coverage in window 9:101318213-101318219
2012-10-07 18:34:04,069 - DEBUG - Taking top 8 variants by coverage in window 9:101338589-101338590
2012-10-07 18:34:05,264 - DEBUG - Taking top 8 variants by coverage in window 9:101353349-101353350
2012-10-07 18:34:06,381 - DEBUG - Taking top 8 variants by coverage in window 9:101370296-101370297
2012-10-07 18:34:06,513 - DEBUG - Taking top 8 variants by coverage in window 9:101371241-101371242
2012-10-07 18:34:07,004 - DEBUG - Taking top 8 variants by coverage in window 9:101377811-101377812
2012-10-07 18:34:07,657 - DEBUG - Taking top 8 variants by coverage in window 9:101385766-101385767
2012-10-07 18:34:09,097 - DEBUG - Taking top 8 variants by coverage in window 9:101394339-101394340
2012-10-07 18:34:09,112 - DEBUG - Taking top 8 variants by coverage in window 9:101394345-101394346
2012-10-07 18:34:09,427 - DEBUG - Taking top 8 variants by coverage in window 9:101397070-101397076
2012-10-07 18:34:09,455 - DEBUG - Taking top 8 variants by coverage in window 9:101397080-101397081
2012-10-07 18:34:09,543 - DEBUG - Taking top 8 variants by coverage in window 9:101397100-101397102
2012-10-07 18:34:09,880 - DEBUG - Taking top 8 variants by coverage in window 9:101400095-101400096
2012-10-07 18:34:09,967 - DEBUG - Taking top 8 variants by coverage in window 9:101400874-101400877
2012-10-07 18:34:10,028 - DEBUG - Taking top 8 variants by coverage in window 9:101401454-101401455
2012-10-07 18:34:10,119 - DEBUG - Taking top 8 variants by coverage in window 9:101402419-101402428
2012-10-07 18:34:10,666 - DEBUG - Taking top 8 variants by coverage in window 9:101408708-101408728
2012-10-07 18:34:10,735 - DEBUG - Taking top 8 variants by coverage in window 9:101409161-101409163
2012-10-07 18:34:10,763 - DEBUG - Taking top 8 variants by coverage in window 9:101409184-101409185
2012-10-07 18:34:11,142 - DEBUG - Taking top 8 variants by coverage in window 9:101415192-101415193
2012-10-07 18:34:11,821 - DEBUG - Taking top 8 variants by coverage in window 9:101421857-101421858
2012-10-07 18:34:12,134 - DEBUG - Taking top 8 variants by coverage in window 9:101427480-101427482
2012-10-07 18:34:12,204 - DEBUG - Taking top 8 variants by coverage in window 9:101427707-101427708
2012-10-07 18:34:12,370 - DEBUG - Taking top 8 variants by coverage in window 9:101428825-101428827
2012-10-07 18:34:12,685 - DEBUG - Taking top 8 variants by coverage in window 9:101431207-101431208
2012-10-07 18:34:14,057 - DEBUG - Taking top 8 variants by coverage in window 9:101447855-101447856
2012-10-07 18:34:14,240 - DEBUG - Taking top 8 variants by coverage in window 9:101447956-101447957
2012-10-07 18:34:14,423 - DEBUG - Taking top 8 variants by coverage in window 9:101448208-101448214
2012-10-07 18:34:14,957 - DEBUG - Taking top 8 variants by coverage in window 9:101452733-101452742
2012-10-07 18:34:15,765 - DEBUG - Taking top 8 variants by coverage in window 9:101453839-101453840
2012-10-07 18:34:15,794 - DEBUG - Taking top 8 variants by coverage in window 9:101453873-101453874
2012-10-07 18:34:15,848 - DEBUG - Taking top 8 variants by coverage in window 9:101454428-101454448
2012-10-07 18:34:16,067 - DEBUG - Taking top 8 variants by coverage in window 9:101458126-101458127
2012-10-07 18:34:16,142 - DEBUG - Taking top 8 variants by coverage in window 9:101458185-101458188
2012-10-07 18:34:16,749 - DEBUG - Taking top 8 variants by coverage in window 9:101462572-101462573
2012-10-07 18:34:16,769 - DEBUG - Taking top 8 variants by coverage in window 9:101462601-101462602
2012-10-07 18:34:16,945 - DEBUG - Taking top 8 variants by coverage in window 9:101464305-101464306
2012-10-07 18:34:16,977 - DEBUG - Taking top 8 variants by coverage in window 9:101464530-101464532
2012-10-07 18:34:16,996 - DEBUG - Taking top 8 variants by coverage in window 9:101465157-101465158
2012-10-07 18:34:17,022 - DEBUG - Taking top 8 variants by coverage in window 9:101465182-101465183
2012-10-07 18:34:17,299 - DEBUG - Taking top 8 variants by coverage in window 9:101468896-101468897
2012-10-07 18:34:18,212 - DEBUG - Taking top 8 variants by coverage in window 9:101475967-101475968
2012-10-07 18:34:18,861 - DEBUG - Taking top 8 variants by coverage in window 9:101482504-101482505
2012-10-07 18:34:19,703 - DEBUG - Taking top 8 variants by coverage in window 9:101489863-101489864
2012-10-07 18:34:20,359 - DEBUG - Taking top 8 variants by coverage in window 9:101497053-101497056
2012-10-07 18:34:20,588 - DEBUG - Taking top 8 variants by coverage in window 9:101497461-101497467
2012-10-07 18:34:20,698 - DEBUG - Taking top 8 variants by coverage in window 9:101497499-101497500
2012-10-07 18:34:20,809 - DEBUG - Taking top 8 variants by coverage in window 9:101498027-101498028
2012-10-07 18:34:21,107 - DEBUG - Taking top 8 variants by coverage in window 9:101500670-101500671
2012-10-07 18:34:21,417 - DEBUG - Taking top 8 variants by coverage in window 9:101502441-101502442
2012-10-07 18:34:21,627 - DEBUG - Taking top 8 variants by coverage in window 9:101504891-101504896
2012-10-07 18:34:21,930 - DEBUG - Taking top 8 variants by coverage in window 9:101507450-101507451
2012-10-07 18:34:22,564 - DEBUG - Taking top 8 variants by coverage in window 9:101512585-101512589
2012-10-07 18:34:22,788 - DEBUG - Taking top 8 variants by coverage in window 9:101513770-101513774
2012-10-07 18:34:22,830 - DEBUG - Taking top 8 variants by coverage in window 9:101513791-101513792
2012-10-07 18:34:22,927 - DEBUG - Taking top 8 variants by coverage in window 9:101513938-101513939
2012-10-07 18:34:23,080 - DEBUG - Taking top 8 variants by coverage in window 9:101515171-101515172
2012-10-07 18:34:23,607 - DEBUG - Taking top 8 variants by coverage in window 9:101522790-101522792
2012-10-07 18:34:24,165 - DEBUG - Taking top 8 variants by coverage in window 9:101531758-101531759
2012-10-07 18:34:24,319 - DEBUG - Taking top 8 variants by coverage in window 9:101532740-101532741
2012-10-07 18:34:25,004 - DEBUG - Taking top 8 variants by coverage in window 9:101541882-101541891
2012-10-07 18:34:25,109 - DEBUG - Taking top 8 variants by coverage in window 9:101542881-101542882
2012-10-07 18:34:26,292 - DEBUG - Taking top 8 variants by coverage in window 9:101555699-101555700
2012-10-07 18:34:26,875 - DEBUG - Taking top 8 variants by coverage in window 9:101566320-101566321
2012-10-07 18:34:26,948 - DEBUG - Taking top 8 variants by coverage in window 9:101566980-101566991
2012-10-07 18:34:27,489 - DEBUG - Taking top 8 variants by coverage in window 9:101572026-101572027
2012-10-07 18:34:27,906 - DEBUG - Taking top 8 variants by coverage in window 9:101574462-101574465
2012-10-07 18:34:28,046 - DEBUG - Taking top 8 variants by coverage in window 9:101574629-101574630
2012-10-07 18:34:28,759 - DEBUG - Taking top 8 variants by coverage in window 9:101581925-101581926
2012-10-07 18:34:29,090 - DEBUG - Taking top 8 variants by coverage in window 9:101583448-101583450
2012-10-07 18:34:30,562 - DEBUG - Taking top 8 variants by coverage in window 9:101606301-101606307
2012-10-07 18:34:30,684 - DEBUG - Taking top 8 variants by coverage in window 9:101608228-101608229
2012-10-07 18:34:31,271 - DEBUG - Taking top 8 variants by coverage in window 9:101614735-101614736
2012-10-07 18:34:31,678 - DEBUG - Taking top 8 variants by coverage in window 9:101618608-101618609
2012-10-07 18:34:31,977 - DEBUG - Taking top 8 variants by coverage in window 9:101622159-101622160
2012-10-07 18:34:32,341 - DEBUG - Taking top 8 variants by coverage in window 9:101627210-101627211
2012-10-07 18:34:32,679 - DEBUG - Taking top 8 variants by coverage in window 9:101631183-101631193
2012-10-07 18:34:32,695 - DEBUG - Taking top 8 variants by coverage in window 9:101631195-101631207
2012-10-07 18:34:33,083 - DEBUG - Taking top 8 variants by coverage in window 9:101635189-101635190
2012-10-07 18:34:33,897 - DEBUG - Taking top 8 variants by coverage in window 9:101645890-101645891
2012-10-07 18:34:34,004 - DEBUG - Taking top 8 variants by coverage in window 9:101647183-101647184
2012-10-07 18:34:34,190 - DEBUG - Taking top 8 variants by coverage in window 9:101649475-101649476
2012-10-07 18:34:34,566 - DEBUG - Taking top 8 variants by coverage in window 9:101654247-101654248
2012-10-07 18:34:35,977 - DEBUG - Taking top 8 variants by coverage in window 9:101666757-101666760
2012-10-07 18:34:36,106 - DEBUG - Taking top 8 variants by coverage in window 9:101668106-101668107
2012-10-07 18:34:36,132 - DEBUG - Taking top 8 variants by coverage in window 9:101668135-101668136
2012-10-07 18:34:36,373 - DEBUG - Taking top 8 variants by coverage in window 9:101670870-101670871
2012-10-07 18:34:37,010 - DEBUG - Taking top 8 variants by coverage in window 9:101680290-101680293
2012-10-07 18:34:37,446 - DEBUG - Taking top 8 variants by coverage in window 9:101682975-101682983
2012-10-07 18:34:37,457 - DEBUG - Taking top 8 variants by coverage in window 9:101682984-101682985
2012-10-07 18:34:37,465 - DEBUG - Taking top 8 variants by coverage in window 9:101682985-101682986
2012-10-07 18:34:37,531 - DEBUG - Taking top 8 variants by coverage in window 9:101683104-101683105
2012-10-07 18:34:38,679 - DEBUG - Taking top 8 variants by coverage in window 9:101696188-101696189
2012-10-07 18:34:39,447 - DEBUG - Taking top 8 variants by coverage in window 9:101707686-101707687
2012-10-07 18:34:39,706 - DEBUG - Taking top 8 variants by coverage in window 9:101710160-101710167
2012-10-07 18:34:40,620 - DEBUG - Taking top 8 variants by coverage in window 9:101725980-101725981
2012-10-07 18:34:40,729 - DEBUG - Taking top 8 variants by coverage in window 9:101726552-101726553
2012-10-07 18:34:40,913 - DEBUG - Taking top 8 variants by coverage in window 9:101727759-101727760
2012-10-07 18:34:41,080 - DEBUG - Taking top 8 variants by coverage in window 9:101728853-101728854
2012-10-07 18:34:41,098 - DEBUG - Taking top 8 variants by coverage in window 9:101728901-101728914
2012-10-07 18:34:41,222 - DEBUG - Taking top 8 variants by coverage in window 9:101729783-101729784
2012-10-07 18:34:41,232 - DEBUG - Taking top 8 variants by coverage in window 9:101729785-101729786
2012-10-07 18:34:41,495 - DEBUG - Taking top 8 variants by coverage in window 9:101732614-101732615
2012-10-07 18:34:42,200 - DEBUG - Taking top 8 variants by coverage in window 9:101744015-101744016
2012-10-07 18:34:42,987 - DEBUG - Taking top 8 variants by coverage in window 9:101755624-101755625
2012-10-07 18:34:43,074 - DEBUG - Taking top 8 variants by coverage in window 9:101757078-101757079
2012-10-07 18:34:43,089 - DEBUG - Taking top 8 variants by coverage in window 9:101757094-101757095
2012-10-07 18:34:43,923 - DEBUG - Taking top 8 variants by coverage in window 9:101766427-101766428
2012-10-07 18:34:44,916 - DEBUG - Taking top 8 variants by coverage in window 9:101781666-101781670
2012-10-07 18:34:45,033 - DEBUG - Taking top 8 variants by coverage in window 9:101782502-101782503
2012-10-07 18:34:45,451 - DEBUG - Taking top 8 variants by coverage in window 9:101787093-101787094
2012-10-07 18:34:45,832 - DEBUG - Taking top 8 variants by coverage in window 9:101791812-101791818
2012-10-07 18:34:46,879 - DEBUG - Taking top 8 variants by coverage in window 9:101807440-101807441
2012-10-07 18:34:47,094 - DEBUG - Taking top 8 variants by coverage in window 9:101809908-101809916
2012-10-07 18:34:47,126 - DEBUG - Taking top 8 variants by coverage in window 9:101809939-101809940
2012-10-07 18:34:47,177 - DEBUG - Taking top 8 variants by coverage in window 9:101810024-101810025
2012-10-07 18:34:48,335 - DEBUG - Taking top 8 variants by coverage in window 9:101828442-101828443
2012-10-07 18:34:48,424 - DEBUG - Taking top 8 variants by coverage in window 9:101829594-101829595
2012-10-07 18:34:48,942 - DEBUG - Taking top 8 variants by coverage in window 9:101838291-101838296
2012-10-07 18:34:49,368 - DEBUG - Taking top 8 variants by coverage in window 9:101838317-101838318
2012-10-07 18:34:49,395 - DEBUG - Taking top 8 variants by coverage in window 9:101838327-101838328
2012-10-07 18:34:49,410 - DEBUG - Taking top 8 variants by coverage in window 9:101838328-101838329
2012-10-07 18:34:49,586 - DEBUG - Taking top 8 variants by coverage in window 9:101839153-101839159
2012-10-07 18:34:50,072 - DEBUG - Taking top 8 variants by coverage in window 9:101843339-101843340
2012-10-07 18:34:50,222 - DEBUG - Taking top 8 variants by coverage in window 9:101846310-101846311
2012-10-07 18:34:51,129 - DEBUG - Taking top 8 variants by coverage in window 9:101862342-101862344
2012-10-07 18:34:51,954 - DEBUG - Taking top 8 variants by coverage in window 9:101880864-101880865
2012-10-07 18:34:53,090 - DEBUG - Taking top 8 variants by coverage in window 9:101896150-101896151
2012-10-07 18:34:53,097 - DEBUG - Taking top 8 variants by coverage in window 9:101896156-101896157
2012-10-07 18:34:53,567 - DEBUG - Taking top 8 variants by coverage in window 9:101901600-101901601
2012-10-07 18:34:53,641 - DEBUG - Taking top 8 variants by coverage in window 9:101902477-101902478
2012-10-07 18:34:53,741 - DEBUG - Taking top 8 variants by coverage in window 9:101903656-101903657
2012-10-07 18:34:53,878 - DEBUG - Taking top 8 variants by coverage in window 9:101904009-101904010
2012-10-07 18:34:54,094 - DEBUG - Taking top 8 variants by coverage in window 9:101905908-101905909
2012-10-07 18:34:55,410 - DEBUG - Taking top 8 variants by coverage in window 9:101924799-101924800
2012-10-07 18:34:55,700 - DEBUG - Taking top 8 variants by coverage in window 9:101929781-101929786
2012-10-07 18:34:56,086 - DEBUG - Taking top 8 variants by coverage in window 9:101930534-101930540
2012-10-07 18:34:56,144 - DEBUG - Taking top 8 variants by coverage in window 9:101931330-101931331
2012-10-07 18:34:56,316 - DEBUG - Taking top 8 variants by coverage in window 9:101935219-101935220
2012-10-07 18:34:56,547 - DEBUG - Taking top 8 variants by coverage in window 9:101941888-101941898
2012-10-07 18:34:57,038 - DEBUG - Taking top 8 variants by coverage in window 9:101952598-101952599
2012-10-07 18:34:57,189 - DEBUG - Taking top 8 variants by coverage in window 9:101954133-101954134
2012-10-07 18:34:57,223 - DEBUG - Taking top 8 variants by coverage in window 9:101954141-101954142
2012-10-07 18:34:58,160 - DEBUG - Taking top 8 variants by coverage in window 9:101961779-101961780
2012-10-07 18:34:58,400 - DEBUG - Taking top 8 variants by coverage in window 9:101965840-101965841
2012-10-07 18:34:58,930 - DEBUG - Taking top 8 variants by coverage in window 9:101973884-101973885
2012-10-07 18:34:58,936 - DEBUG - Taking top 8 variants by coverage in window 9:101973886-101973890
2012-10-07 18:34:58,988 - DEBUG - Taking top 8 variants by coverage in window 9:101973923-101973927
2012-10-07 18:34:59,889 - DEBUG - Taking top 8 variants by coverage in window 9:101973957-101973958
2012-10-07 18:35:00,514 - DEBUG - Taking top 8 variants by coverage in window 9:101981031-101981036
2012-10-07 18:35:00,531 - DEBUG - Taking top 8 variants by coverage in window 9:101981037-101981038
2012-10-07 18:35:00,546 - DEBUG - Taking top 8 variants by coverage in window 9:101981061-101981062
2012-10-07 18:35:00,737 - DEBUG - Taking top 8 variants by coverage in window 9:101981952-101981953
2012-10-07 18:35:01,204 - DEBUG - Taking top 8 variants by coverage in window 9:101985235-101985236
2012-10-07 18:35:02,912 - DEBUG - Read 104927 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 18:35:03,185 - DEBUG - Read 113927 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 18:35:03,473 - DEBUG - Read 129811 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 18:35:03,794 - DEBUG - Read 131917 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 18:35:04,098 - DEBUG - Read 122620 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 18:35:04,406 - DEBUG - Read 118216 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 18:35:04,692 - DEBUG - Read 125009 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 18:35:04,975 - DEBUG - Read 115946 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 18:35:05,235 - DEBUG - Read 109743 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 18:35:05,495 - DEBUG - Read 106297 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 18:35:05,781 - DEBUG - Read 121355 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 18:35:06,037 - DEBUG - Read 111089 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 18:35:06,306 - DEBUG - Read 112409 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 18:35:06,572 - DEBUG - Read 122549 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 18:35:06,869 - DEBUG - Read 132342 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 18:35:07,117 - DEBUG - Read 102058 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 18:35:07,398 - DEBUG - Read 127348 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 18:35:07,679 - DEBUG - Read 119113 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 18:35:07,926 - DEBUG - Read 108289 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 18:35:08,181 - DEBUG - Read 103378 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 18:35:08,303 - DEBUG - Detected 26719 variants in 104927 reads
2012-10-07 18:35:08,521 - DEBUG - Detected 37124 variants in 113927 reads
2012-10-07 18:35:08,789 - DEBUG - Detected 47297 variants in 129811 reads
2012-10-07 18:35:09,107 - DEBUG - Detected 54366 variants in 131917 reads
2012-10-07 18:35:09,450 - DEBUG - Detected 60438 variants in 122620 reads
2012-10-07 18:35:09,820 - DEBUG - Detected 66968 variants in 118216 reads
2012-10-07 18:35:10,238 - DEBUG - Detected 80850 variants in 125009 reads
2012-10-07 18:35:10,756 - DEBUG - Detected 87508 variants in 115946 reads
2012-10-07 18:35:11,257 - DEBUG - Detected 94487 variants in 109743 reads
2012-10-07 18:35:11,791 - DEBUG - Detected 100259 variants in 106297 reads
2012-10-07 18:35:12,366 - DEBUG - Detected 105198 variants in 121355 reads
2012-10-07 18:35:12,956 - DEBUG - Detected 109892 variants in 111089 reads
2012-10-07 18:35:13,624 - DEBUG - Detected 114122 variants in 112409 reads
2012-10-07 18:35:14,273 - DEBUG - Detected 118625 variants in 122549 reads
2012-10-07 18:35:14,958 - DEBUG - Detected 126420 variants in 132342 reads
2012-10-07 18:35:15,648 - DEBUG - Detected 132318 variants in 102058 reads
2012-10-07 18:35:16,410 - DEBUG - Detected 136952 variants in 127348 reads
2012-10-07 18:35:17,169 - DEBUG - Detected 141814 variants in 119113 reads
2012-10-07 18:35:17,893 - DEBUG - Detected 146865 variants in 108289 reads
2012-10-07 18:35:18,622 - DEBUG - Detected 151811 variants in 103378 reads
2012-10-07 18:35:19,674 - DEBUG - Taking top 8 variants by coverage in window 9:102000101-102000102
2012-10-07 18:35:19,892 - DEBUG - Taking top 8 variants by coverage in window 9:102003604-102003605
2012-10-07 18:35:19,904 - DEBUG - Taking top 8 variants by coverage in window 9:102003621-102003622
2012-10-07 18:35:20,050 - DEBUG - Taking top 8 variants by coverage in window 9:102006034-102006035
2012-10-07 18:35:20,472 - DEBUG - Taking top 8 variants by coverage in window 9:102013009-102013010
2012-10-07 18:35:20,563 - DEBUG - Taking top 8 variants by coverage in window 9:102013215-102013216
2012-10-07 18:35:21,166 - DEBUG - Taking top 8 variants by coverage in window 9:102019114-102019115
2012-10-07 18:35:21,252 - DEBUG - Taking top 8 variants by coverage in window 9:102019734-102019735
2012-10-07 18:35:21,335 - DEBUG - Taking top 8 variants by coverage in window 9:102020019-102020020
2012-10-07 18:35:21,364 - DEBUG - Taking top 8 variants by coverage in window 9:102020043-102020044
2012-10-07 18:35:21,462 - DEBUG - Taking top 8 variants by coverage in window 9:102020975-102020999
2012-10-07 18:35:21,544 - DEBUG - Taking top 8 variants by coverage in window 9:102021411-102021412
2012-10-07 18:35:21,675 - DEBUG - Taking top 8 variants by coverage in window 9:102022529-102022531
2012-10-07 18:35:22,361 - DEBUG - Taking top 8 variants by coverage in window 9:102031286-102031287
2012-10-07 18:35:23,001 - DEBUG - Taking top 8 variants by coverage in window 9:102039439-102039440
2012-10-07 18:35:23,460 - DEBUG - Taking top 8 variants by coverage in window 9:102044466-102044467
2012-10-07 18:35:23,492 - DEBUG - Taking top 8 variants by coverage in window 9:102044481-102044482
2012-10-07 18:35:23,543 - DEBUG - Taking top 8 variants by coverage in window 9:102044487-102044488
2012-10-07 18:35:23,785 - DEBUG - Taking top 8 variants by coverage in window 9:102045749-102045750
2012-10-07 18:35:24,041 - DEBUG - Taking top 8 variants by coverage in window 9:102049115-102049116
2012-10-07 18:35:24,158 - DEBUG - Taking top 8 variants by coverage in window 9:102050924-102050925
2012-10-07 18:35:24,753 - DEBUG - Taking top 8 variants by coverage in window 9:102056828-102056829
2012-10-07 18:35:24,838 - DEBUG - Taking top 8 variants by coverage in window 9:102056963-102056964
2012-10-07 18:35:25,146 - DEBUG - Taking top 8 variants by coverage in window 9:102061446-102061447
2012-10-07 18:35:25,835 - DEBUG - Taking top 8 variants by coverage in window 9:102069235-102069236
2012-10-07 18:35:25,909 - DEBUG - Taking top 8 variants by coverage in window 9:102070582-102070583
2012-10-07 18:35:26,401 - DEBUG - Taking top 8 variants by coverage in window 9:102078113-102078122
2012-10-07 18:35:26,453 - DEBUG - Taking top 8 variants by coverage in window 9:102078130-102078131
2012-10-07 18:35:26,674 - DEBUG - Taking top 8 variants by coverage in window 9:102078564-102078565
2012-10-07 18:35:26,690 - DEBUG - Taking top 8 variants by coverage in window 9:102078565-102078566
2012-10-07 18:35:28,035 - DEBUG - Taking top 8 variants by coverage in window 9:102096802-102096803
2012-10-07 18:35:28,893 - DEBUG - Taking top 8 variants by coverage in window 9:102108265-102108266
2012-10-07 18:35:29,242 - DEBUG - Taking top 8 variants by coverage in window 9:102113440-102113441
2012-10-07 18:35:29,340 - DEBUG - Taking top 8 variants by coverage in window 9:102115360-102115361
2012-10-07 18:35:29,499 - DEBUG - Taking top 8 variants by coverage in window 9:102116594-102116596
2012-10-07 18:35:29,591 - DEBUG - Taking top 8 variants by coverage in window 9:102116624-102116625
2012-10-07 18:35:29,859 - DEBUG - Taking top 8 variants by coverage in window 9:102117582-102117583
2012-10-07 18:35:30,772 - DEBUG - Taking top 8 variants by coverage in window 9:102126837-102126838
2012-10-07 18:35:30,784 - DEBUG - Taking top 8 variants by coverage in window 9:102126861-102126862
2012-10-07 18:35:31,364 - DEBUG - Taking top 8 variants by coverage in window 9:102132123-102132134
2012-10-07 18:35:32,100 - DEBUG - Taking top 8 variants by coverage in window 9:102136875-102136880
2012-10-07 18:35:32,324 - DEBUG - Taking top 8 variants by coverage in window 9:102139232-102139241
2012-10-07 18:35:32,485 - DEBUG - Taking top 8 variants by coverage in window 9:102139250-102139255
2012-10-07 18:35:33,832 - DEBUG - Taking top 8 variants by coverage in window 9:102153185-102153205
2012-10-07 18:35:34,035 - DEBUG - Taking top 8 variants by coverage in window 9:102154504-102154505
2012-10-07 18:35:34,478 - DEBUG - Taking top 8 variants by coverage in window 9:102160201-102160205
2012-10-07 18:35:35,174 - DEBUG - Taking top 8 variants by coverage in window 9:102168469-102168470
2012-10-07 18:35:35,275 - DEBUG - Taking top 8 variants by coverage in window 9:102169041-102169043
2012-10-07 18:35:35,376 - DEBUG - Taking top 8 variants by coverage in window 9:102169072-102169073
2012-10-07 18:35:36,255 - DEBUG - Taking top 8 variants by coverage in window 9:102177355-102177356
2012-10-07 18:35:36,426 - DEBUG - Taking top 8 variants by coverage in window 9:102179703-102179706
2012-10-07 18:35:36,666 - DEBUG - Taking top 8 variants by coverage in window 9:102188818-102188836
2012-10-07 18:35:36,930 - DEBUG - Taking top 8 variants by coverage in window 9:102189931-102189932
2012-10-07 18:35:37,627 - DEBUG - Taking top 8 variants by coverage in window 9:102196351-102196352
2012-10-07 18:35:37,792 - DEBUG - Taking top 8 variants by coverage in window 9:102198466-102198469
2012-10-07 18:35:38,205 - DEBUG - Taking top 8 variants by coverage in window 9:102202403-102202405
2012-10-07 18:35:38,434 - DEBUG - Taking top 8 variants by coverage in window 9:102203822-102203823
2012-10-07 18:35:38,757 - DEBUG - Taking top 8 variants by coverage in window 9:102207256-102207257
2012-10-07 18:35:38,837 - DEBUG - Taking top 8 variants by coverage in window 9:102207284-102207285
2012-10-07 18:35:38,868 - DEBUG - Taking top 8 variants by coverage in window 9:102207613-102207618
2012-10-07 18:35:39,403 - DEBUG - Taking top 8 variants by coverage in window 9:102212131-102212134
2012-10-07 18:35:39,473 - DEBUG - Taking top 8 variants by coverage in window 9:102212154-102212162
2012-10-07 18:35:39,557 - DEBUG - Taking top 8 variants by coverage in window 9:102212178-102212186
2012-10-07 18:35:39,873 - DEBUG - Taking top 8 variants by coverage in window 9:102212236-102212239
2012-10-07 18:35:39,914 - DEBUG - Taking top 8 variants by coverage in window 9:102212248-102212255
2012-10-07 18:35:39,936 - DEBUG - Taking top 8 variants by coverage in window 9:102212267-102212274
2012-10-07 18:35:40,557 - DEBUG - Taking top 8 variants by coverage in window 9:102212301-102212307
2012-10-07 18:35:42,252 - DEBUG - Taking top 8 variants by coverage in window 9:102212309-102212314
2012-10-07 18:35:42,300 - DEBUG - Taking top 8 variants by coverage in window 9:102212315-102212319
2012-10-07 18:35:42,506 - DEBUG - Taking top 8 variants by coverage in window 9:102212339-102212341
2012-10-07 18:35:43,233 - DEBUG - Taking top 8 variants by coverage in window 9:102214968-102214969
2012-10-07 18:35:43,270 - DEBUG - Taking top 8 variants by coverage in window 9:102215059-102215060
2012-10-07 18:35:45,031 - DEBUG - Taking top 8 variants by coverage in window 9:102234127-102234129
2012-10-07 18:35:45,325 - DEBUG - Taking top 8 variants by coverage in window 9:102240279-102240280
2012-10-07 18:35:45,699 - DEBUG - Taking top 8 variants by coverage in window 9:102244738-102244739
2012-10-07 18:35:45,758 - DEBUG - Taking top 8 variants by coverage in window 9:102244750-102244751
2012-10-07 18:35:46,034 - DEBUG - Taking top 8 variants by coverage in window 9:102244788-102244790
2012-10-07 18:35:46,204 - DEBUG - Taking top 8 variants by coverage in window 9:102245162-102245163
2012-10-07 18:35:46,772 - DEBUG - Taking top 8 variants by coverage in window 9:102248967-102248968
2012-10-07 18:35:48,104 - DEBUG - Taking top 8 variants by coverage in window 9:102252941-102252942
2012-10-07 18:35:48,507 - DEBUG - Taking top 8 variants by coverage in window 9:102260910-102260911
2012-10-07 18:35:48,542 - DEBUG - Taking top 8 variants by coverage in window 9:102261438-102261439
2012-10-07 18:35:48,645 - DEBUG - Taking top 8 variants by coverage in window 9:102261897-102261901
2012-10-07 18:35:48,900 - DEBUG - Taking top 8 variants by coverage in window 9:102261946-102261947
2012-10-07 18:35:49,104 - DEBUG - Taking top 8 variants by coverage in window 9:102265910-102265917
2012-10-07 18:35:49,145 - DEBUG - Taking top 8 variants by coverage in window 9:102266027-102266028
2012-10-07 18:35:49,603 - DEBUG - Taking top 8 variants by coverage in window 9:102277325-102277326
2012-10-07 18:35:49,824 - DEBUG - Taking top 8 variants by coverage in window 9:102283040-102283041
2012-10-07 18:35:49,914 - DEBUG - Taking top 8 variants by coverage in window 9:102284192-102284201
2012-10-07 18:35:50,872 - DEBUG - Taking top 8 variants by coverage in window 9:102296332-102296342
2012-10-07 18:35:51,112 - DEBUG - Taking top 8 variants by coverage in window 9:102298232-102298233
2012-10-07 18:35:51,659 - DEBUG - Taking top 8 variants by coverage in window 9:102304518-102304534
2012-10-07 18:35:51,713 - DEBUG - Taking top 8 variants by coverage in window 9:102304645-102304651
2012-10-07 18:35:52,105 - DEBUG - Taking top 8 variants by coverage in window 9:102307658-102307662
2012-10-07 18:35:52,370 - DEBUG - Taking top 8 variants by coverage in window 9:102310070-102310076
2012-10-07 18:35:52,790 - DEBUG - Taking top 8 variants by coverage in window 9:102314675-102314676
2012-10-07 18:35:53,127 - DEBUG - Taking top 8 variants by coverage in window 9:102318649-102318650
2012-10-07 18:35:53,158 - DEBUG - Taking top 8 variants by coverage in window 9:102318678-102318679
2012-10-07 18:35:53,545 - DEBUG - Taking top 8 variants by coverage in window 9:102321825-102321826
2012-10-07 18:35:53,605 - DEBUG - Taking top 8 variants by coverage in window 9:102322444-102322450
2012-10-07 18:35:53,613 - DEBUG - Taking top 8 variants by coverage in window 9:102322453-102322454
2012-10-07 18:35:53,676 - DEBUG - Taking top 8 variants by coverage in window 9:102322461-102322462
2012-10-07 18:35:53,804 - DEBUG - Taking top 8 variants by coverage in window 9:102323660-102323668
2012-10-07 18:35:54,152 - DEBUG - Taking top 8 variants by coverage in window 9:102329206-102329207
2012-10-07 18:35:54,631 - DEBUG - Taking top 8 variants by coverage in window 9:102334021-102334022
2012-10-07 18:35:54,689 - DEBUG - Taking top 8 variants by coverage in window 9:102334236-102334239
2012-10-07 18:35:54,947 - DEBUG - Taking top 8 variants by coverage in window 9:102334427-102334428
2012-10-07 18:35:55,167 - DEBUG - Taking top 8 variants by coverage in window 9:102336548-102336550
2012-10-07 18:35:56,731 - DEBUG - Taking top 8 variants by coverage in window 9:102336582-102336583
2012-10-07 18:35:56,810 - DEBUG - Taking top 8 variants by coverage in window 9:102336590-102336591
2012-10-07 18:35:56,879 - DEBUG - Taking top 8 variants by coverage in window 9:102336592-102336593
2012-10-07 18:35:56,970 - DEBUG - Taking top 8 variants by coverage in window 9:102336621-102336622
2012-10-07 18:35:57,114 - DEBUG - Taking top 8 variants by coverage in window 9:102338832-102338834
2012-10-07 18:35:57,901 - DEBUG - Taking top 8 variants by coverage in window 9:102346931-102346933
2012-10-07 18:35:58,160 - DEBUG - Taking top 8 variants by coverage in window 9:102350650-102350651
2012-10-07 18:35:58,195 - DEBUG - Taking top 8 variants by coverage in window 9:102350662-102350663
2012-10-07 18:35:58,236 - DEBUG - Taking top 8 variants by coverage in window 9:102350700-102350701
2012-10-07 18:35:58,549 - DEBUG - Taking top 8 variants by coverage in window 9:102353512-102353513
2012-10-07 18:35:59,027 - DEBUG - Taking top 8 variants by coverage in window 9:102360092-102360099
2012-10-07 18:35:59,083 - DEBUG - Taking top 8 variants by coverage in window 9:102360136-102360137
2012-10-07 18:35:59,183 - DEBUG - Taking top 8 variants by coverage in window 9:102361004-102361005
2012-10-07 18:35:59,455 - DEBUG - Taking top 8 variants by coverage in window 9:102361014-102361020
2012-10-07 18:35:59,667 - DEBUG - Taking top 8 variants by coverage in window 9:102362474-102362476
2012-10-07 18:36:00,022 - DEBUG - Taking top 8 variants by coverage in window 9:102367471-102367491
2012-10-07 18:36:00,188 - DEBUG - Taking top 8 variants by coverage in window 9:102369166-102369175
2012-10-07 18:36:00,452 - DEBUG - Taking top 8 variants by coverage in window 9:102369706-102369707
2012-10-07 18:36:01,153 - DEBUG - Taking top 8 variants by coverage in window 9:102385705-102385706
2012-10-07 18:36:01,289 - DEBUG - Taking top 8 variants by coverage in window 9:102387792-102387793
2012-10-07 18:36:01,828 - DEBUG - Taking top 8 variants by coverage in window 9:102394446-102394450
2012-10-07 18:36:02,521 - DEBUG - Taking top 8 variants by coverage in window 9:102406191-102406192
2012-10-07 18:36:02,605 - DEBUG - Taking top 8 variants by coverage in window 9:102407073-102407081
2012-10-07 18:36:02,661 - DEBUG - Taking top 8 variants by coverage in window 9:102409225-102409226
2012-10-07 18:36:04,278 - DEBUG - Taking top 8 variants by coverage in window 9:102436090-102436095
2012-10-07 18:36:05,016 - DEBUG - Taking top 8 variants by coverage in window 9:102441743-102441744
2012-10-07 18:36:05,251 - DEBUG - Taking top 8 variants by coverage in window 9:102443676-102443677
2012-10-07 18:36:05,287 - DEBUG - Taking top 8 variants by coverage in window 9:102443680-102443681
2012-10-07 18:36:05,321 - DEBUG - Taking top 8 variants by coverage in window 9:102443690-102443692
2012-10-07 18:36:05,763 - DEBUG - Taking top 8 variants by coverage in window 9:102443761-102443762
2012-10-07 18:36:06,234 - DEBUG - Taking top 8 variants by coverage in window 9:102449677-102449678
2012-10-07 18:36:06,257 - DEBUG - Taking top 8 variants by coverage in window 9:102449681-102449685
2012-10-07 18:36:06,708 - DEBUG - Taking top 8 variants by coverage in window 9:102454659-102454660
2012-10-07 18:36:06,765 - DEBUG - Taking top 8 variants by coverage in window 9:102454727-102454728
2012-10-07 18:36:06,830 - DEBUG - Taking top 8 variants by coverage in window 9:102455009-102455013
2012-10-07 18:36:06,874 - DEBUG - Taking top 8 variants by coverage in window 9:102455051-102455052
2012-10-07 18:36:07,602 - DEBUG - Taking top 8 variants by coverage in window 9:102464201-102464205
2012-10-07 18:36:07,701 - DEBUG - Taking top 8 variants by coverage in window 9:102464613-102464623
2012-10-07 18:36:07,859 - DEBUG - Taking top 8 variants by coverage in window 9:102466218-102466221
2012-10-07 18:36:08,564 - DEBUG - Taking top 8 variants by coverage in window 9:102472856-102472857
2012-10-07 18:36:08,753 - DEBUG - Taking top 8 variants by coverage in window 9:102474547-102474548
2012-10-07 18:36:08,979 - DEBUG - Taking top 8 variants by coverage in window 9:102478413-102478415
2012-10-07 18:36:09,052 - DEBUG - Taking top 8 variants by coverage in window 9:102478451-102478457
2012-10-07 18:36:10,518 - DEBUG - Taking top 8 variants by coverage in window 9:102517506-102517507
2012-10-07 18:36:10,617 - DEBUG - Taking top 8 variants by coverage in window 9:102520720-102520723
2012-10-07 18:36:10,916 - DEBUG - Taking top 8 variants by coverage in window 9:102525513-102525514
2012-10-07 18:36:11,070 - DEBUG - Taking top 8 variants by coverage in window 9:102529229-102529230
2012-10-07 18:36:11,130 - DEBUG - Taking top 8 variants by coverage in window 9:102529642-102529643
2012-10-07 18:36:11,175 - DEBUG - Taking top 8 variants by coverage in window 9:102529775-102529776
2012-10-07 18:36:11,706 - DEBUG - Taking top 8 variants by coverage in window 9:102536253-102536254
2012-10-07 18:36:11,816 - DEBUG - Taking top 8 variants by coverage in window 9:102536861-102536862
2012-10-07 18:36:11,890 - DEBUG - Taking top 8 variants by coverage in window 9:102537340-102537341
2012-10-07 18:36:11,953 - DEBUG - Taking top 8 variants by coverage in window 9:102537647-102537648
2012-10-07 18:36:12,089 - DEBUG - Taking top 8 variants by coverage in window 9:102539301-102539302
2012-10-07 18:36:12,226 - DEBUG - Taking top 8 variants by coverage in window 9:102540786-102540787
2012-10-07 18:36:12,545 - DEBUG - Taking top 8 variants by coverage in window 9:102544183-102544192
2012-10-07 18:36:12,617 - DEBUG - Taking top 8 variants by coverage in window 9:102545010-102545011
2012-10-07 18:36:12,732 - DEBUG - Taking top 8 variants by coverage in window 9:102546751-102546761
2012-10-07 18:36:12,811 - DEBUG - Taking top 8 variants by coverage in window 9:102546779-102546780
2012-10-07 18:36:13,087 - DEBUG - Taking top 8 variants by coverage in window 9:102548657-102548658
2012-10-07 18:36:13,638 - DEBUG - Taking top 8 variants by coverage in window 9:102555451-102555452
2012-10-07 18:36:13,712 - DEBUG - Taking top 8 variants by coverage in window 9:102556093-102556097
2012-10-07 18:36:14,703 - DEBUG - Taking top 8 variants by coverage in window 9:102562761-102562764
2012-10-07 18:36:15,089 - DEBUG - Taking top 8 variants by coverage in window 9:102563259-102563260
2012-10-07 18:36:15,766 - DEBUG - Taking top 8 variants by coverage in window 9:102567706-102567710
2012-10-07 18:36:15,861 - DEBUG - Taking top 8 variants by coverage in window 9:102567952-102567953
2012-10-07 18:36:16,125 - DEBUG - Taking top 8 variants by coverage in window 9:102570523-102570524
2012-10-07 18:36:16,266 - DEBUG - Taking top 8 variants by coverage in window 9:102571700-102571701
2012-10-07 18:36:16,742 - DEBUG - Taking top 8 variants by coverage in window 9:102577342-102577343
2012-10-07 18:36:16,765 - DEBUG - Taking top 8 variants by coverage in window 9:102577357-102577358
2012-10-07 18:36:17,075 - DEBUG - Taking top 8 variants by coverage in window 9:102579143-102579144
2012-10-07 18:36:17,313 - DEBUG - Taking top 8 variants by coverage in window 9:102580981-102580982
2012-10-07 18:36:17,714 - DEBUG - Taking top 8 variants by coverage in window 9:102586153-102586154
2012-10-07 18:36:18,353 - DEBUG - Taking top 8 variants by coverage in window 9:102593356-102593359
2012-10-07 18:36:18,956 - DEBUG - Taking top 8 variants by coverage in window 9:102601816-102601817
2012-10-07 18:36:19,070 - DEBUG - Taking top 8 variants by coverage in window 9:102603874-102603875
2012-10-07 18:36:19,445 - DEBUG - Taking top 8 variants by coverage in window 9:102608029-102608030
2012-10-07 18:36:20,115 - DEBUG - Taking top 8 variants by coverage in window 9:102623853-102623854
2012-10-07 18:36:20,321 - DEBUG - Taking top 8 variants by coverage in window 9:102626302-102626303
2012-10-07 18:36:20,773 - DEBUG - Taking top 8 variants by coverage in window 9:102638702-102638703
2012-10-07 18:36:21,305 - DEBUG - Taking top 8 variants by coverage in window 9:102646784-102646785
2012-10-07 18:36:21,339 - DEBUG - Taking top 8 variants by coverage in window 9:102646977-102646978
2012-10-07 18:36:21,557 - DEBUG - Taking top 8 variants by coverage in window 9:102649426-102649427
2012-10-07 18:36:21,575 - DEBUG - Taking top 8 variants by coverage in window 9:102649440-102649441
2012-10-07 18:36:21,640 - DEBUG - Taking top 8 variants by coverage in window 9:102650084-102650085
2012-10-07 18:36:22,017 - DEBUG - Taking top 8 variants by coverage in window 9:102653894-102653895
2012-10-07 18:36:22,343 - DEBUG - Taking top 8 variants by coverage in window 9:102656509-102656510
2012-10-07 18:36:22,353 - DEBUG - Taking top 8 variants by coverage in window 9:102656538-102656539
2012-10-07 18:36:22,423 - DEBUG - Taking top 8 variants by coverage in window 9:102657897-102657898
2012-10-07 18:36:22,610 - DEBUG - Taking top 8 variants by coverage in window 9:102659843-102659844
2012-10-07 18:36:22,654 - DEBUG - Taking top 8 variants by coverage in window 9:102659851-102659852
2012-10-07 18:36:23,129 - DEBUG - Taking top 8 variants by coverage in window 9:102661077-102661078
2012-10-07 18:36:23,152 - DEBUG - Taking top 8 variants by coverage in window 9:102661087-102661088
2012-10-07 18:36:24,316 - DEBUG - Taking top 8 variants by coverage in window 9:102677226-102677227
2012-10-07 18:36:24,336 - DEBUG - Taking top 8 variants by coverage in window 9:102677244-102677245
2012-10-07 18:36:24,391 - DEBUG - Taking top 8 variants by coverage in window 9:102677554-102677555
2012-10-07 18:36:24,744 - DEBUG - Taking top 8 variants by coverage in window 9:102682910-102682919
2012-10-07 18:36:24,958 - DEBUG - Taking top 8 variants by coverage in window 9:102686562-102686563
2012-10-07 18:36:25,666 - DEBUG - Taking top 8 variants by coverage in window 9:102695205-102695206
2012-10-07 18:36:25,738 - DEBUG - Taking top 8 variants by coverage in window 9:102696242-102696243
2012-10-07 18:36:27,493 - DEBUG - Taking top 8 variants by coverage in window 9:102711464-102711465
2012-10-07 18:36:27,894 - DEBUG - Taking top 8 variants by coverage in window 9:102714318-102714319
2012-10-07 18:36:28,078 - DEBUG - Taking top 8 variants by coverage in window 9:102715264-102715265
2012-10-07 18:36:28,253 - DEBUG - Taking top 8 variants by coverage in window 9:102716025-102716026
2012-10-07 18:36:28,575 - DEBUG - Taking top 8 variants by coverage in window 9:102718469-102718470
2012-10-07 18:36:29,009 - DEBUG - Taking top 8 variants by coverage in window 9:102724485-102724499
2012-10-07 18:36:29,438 - DEBUG - Taking top 8 variants by coverage in window 9:102731420-102731421
2012-10-07 18:36:29,611 - DEBUG - Taking top 8 variants by coverage in window 9:102733557-102733558
2012-10-07 18:36:32,248 - DEBUG - Taking top 8 variants by coverage in window 9:102763441-102763442
2012-10-07 18:36:32,995 - DEBUG - Taking top 8 variants by coverage in window 9:102771153-102771155
2012-10-07 18:36:33,037 - DEBUG - Taking top 8 variants by coverage in window 9:102771419-102771420
2012-10-07 18:36:33,826 - DEBUG - Taking top 8 variants by coverage in window 9:102774851-102774852
2012-10-07 18:36:34,466 - DEBUG - Taking top 8 variants by coverage in window 9:102780462-102780463
2012-10-07 18:36:34,494 - DEBUG - Taking top 8 variants by coverage in window 9:102780464-102780465
2012-10-07 18:36:34,894 - DEBUG - Taking top 8 variants by coverage in window 9:102783446-102783447
2012-10-07 18:36:34,928 - DEBUG - Taking top 8 variants by coverage in window 9:102783472-102783473
2012-10-07 18:36:35,169 - DEBUG - Taking top 8 variants by coverage in window 9:102785574-102785575
2012-10-07 18:36:35,240 - DEBUG - Taking top 8 variants by coverage in window 9:102785828-102785829
2012-10-07 18:36:36,521 - DEBUG - Taking top 8 variants by coverage in window 9:102798950-102798951
2012-10-07 18:36:36,537 - DEBUG - Taking top 8 variants by coverage in window 9:102798963-102798964
2012-10-07 18:36:36,742 - DEBUG - Taking top 8 variants by coverage in window 9:102800116-102800117
2012-10-07 18:36:36,764 - DEBUG - Taking top 8 variants by coverage in window 9:102800122-102800123
2012-10-07 18:36:37,572 - DEBUG - Taking top 8 variants by coverage in window 9:102809237-102809238
2012-10-07 18:36:37,868 - DEBUG - Taking top 8 variants by coverage in window 9:102811992-102811998
2012-10-07 18:36:37,957 - DEBUG - Taking top 8 variants by coverage in window 9:102812205-102812206
2012-10-07 18:36:38,095 - DEBUG - Taking top 8 variants by coverage in window 9:102812901-102812902
2012-10-07 18:36:38,272 - DEBUG - Taking top 8 variants by coverage in window 9:102815653-102815655
2012-10-07 18:36:38,319 - DEBUG - Taking top 8 variants by coverage in window 9:102816049-102816050
2012-10-07 18:36:38,555 - DEBUG - Taking top 8 variants by coverage in window 9:102818755-102818756
2012-10-07 18:36:38,591 - DEBUG - Taking top 8 variants by coverage in window 9:102818772-102818773
2012-10-07 18:36:38,753 - DEBUG - Taking top 8 variants by coverage in window 9:102819862-102819863
2012-10-07 18:36:38,956 - DEBUG - Taking top 8 variants by coverage in window 9:102822105-102822110
2012-10-07 18:36:39,292 - DEBUG - Taking top 8 variants by coverage in window 9:102824440-102824441
2012-10-07 18:36:39,298 - DEBUG - Taking top 8 variants by coverage in window 9:102824441-102824442
2012-10-07 18:36:39,435 - DEBUG - Taking top 8 variants by coverage in window 9:102824459-102824460
2012-10-07 18:36:39,671 - DEBUG - Taking top 8 variants by coverage in window 9:102827678-102827679
2012-10-07 18:36:39,737 - DEBUG - Taking top 8 variants by coverage in window 9:102827838-102827839
2012-10-07 18:36:39,942 - DEBUG - Taking top 8 variants by coverage in window 9:102830362-102830366
2012-10-07 18:36:40,019 - DEBUG - Taking top 8 variants by coverage in window 9:102831680-102831681
2012-10-07 18:36:40,154 - DEBUG - Taking top 8 variants by coverage in window 9:102833088-102833089
2012-10-07 18:36:40,322 - DEBUG - Taking top 8 variants by coverage in window 9:102835005-102835006
2012-10-07 18:36:40,330 - DEBUG - Taking top 8 variants by coverage in window 9:102835007-102835010
2012-10-07 18:36:40,821 - DEBUG - Taking top 8 variants by coverage in window 9:102839176-102839177
2012-10-07 18:36:41,232 - DEBUG - Taking top 8 variants by coverage in window 9:102844451-102844452
2012-10-07 18:36:41,321 - DEBUG - Taking top 8 variants by coverage in window 9:102845047-102845048
2012-10-07 18:36:42,175 - DEBUG - Taking top 8 variants by coverage in window 9:102852620-102852621
2012-10-07 18:36:42,398 - DEBUG - Taking top 8 variants by coverage in window 9:102854785-102854786
2012-10-07 18:36:43,052 - DEBUG - Taking top 8 variants by coverage in window 9:102861511-102861514
2012-10-07 18:36:43,397 - DEBUG - Taking top 8 variants by coverage in window 9:102864639-102864640
2012-10-07 18:36:43,761 - DEBUG - Taking top 8 variants by coverage in window 9:102867485-102867486
2012-10-07 18:36:44,682 - DEBUG - Taking top 8 variants by coverage in window 9:102874585-102874586
2012-10-07 18:36:44,742 - DEBUG - Taking top 8 variants by coverage in window 9:102874606-102874607
2012-10-07 18:36:45,089 - DEBUG - Taking top 8 variants by coverage in window 9:102876907-102876912
2012-10-07 18:36:45,132 - DEBUG - Taking top 8 variants by coverage in window 9:102876925-102876926
2012-10-07 18:36:45,206 - DEBUG - Taking top 8 variants by coverage in window 9:102877994-102877995
2012-10-07 18:36:45,261 - DEBUG - Taking top 8 variants by coverage in window 9:102878628-102878640
2012-10-07 18:36:45,864 - DEBUG - Taking top 8 variants by coverage in window 9:102886095-102886096
2012-10-07 18:36:46,055 - DEBUG - Taking top 8 variants by coverage in window 9:102887366-102887367
2012-10-07 18:36:46,065 - DEBUG - Taking top 8 variants by coverage in window 9:102887368-102887369
2012-10-07 18:36:46,406 - DEBUG - Taking top 8 variants by coverage in window 9:102890699-102890700
2012-10-07 18:36:46,932 - DEBUG - Taking top 8 variants by coverage in window 9:102895542-102895544
2012-10-07 18:36:47,005 - DEBUG - Taking top 8 variants by coverage in window 9:102895866-102895868
2012-10-07 18:36:47,039 - DEBUG - Taking top 8 variants by coverage in window 9:102895898-102895899
2012-10-07 18:36:47,104 - DEBUG - Taking top 8 variants by coverage in window 9:102896097-102896098
2012-10-07 18:36:47,999 - DEBUG - Taking top 8 variants by coverage in window 9:102901300-102901302
2012-10-07 18:36:48,299 - DEBUG - Taking top 8 variants by coverage in window 9:102902303-102902315
2012-10-07 18:36:48,772 - DEBUG - Taking top 8 variants by coverage in window 9:102903113-102903114
2012-10-07 18:36:48,858 - DEBUG - Taking top 8 variants by coverage in window 9:102903275-102903276
2012-10-07 18:36:49,100 - DEBUG - Taking top 8 variants by coverage in window 9:102905844-102905845
2012-10-07 18:36:49,704 - DEBUG - Taking top 8 variants by coverage in window 9:102914181-102914182
2012-10-07 18:36:50,191 - DEBUG - Taking top 8 variants by coverage in window 9:102918141-102918142
2012-10-07 18:36:50,583 - DEBUG - Taking top 8 variants by coverage in window 9:102922789-102922790
2012-10-07 18:36:51,344 - DEBUG - Taking top 8 variants by coverage in window 9:102928857-102928859
2012-10-07 18:36:51,415 - DEBUG - Taking top 8 variants by coverage in window 9:102929041-102929046
2012-10-07 18:36:52,328 - DEBUG - Taking top 8 variants by coverage in window 9:102935608-102935618
2012-10-07 18:36:52,982 - DEBUG - Taking top 8 variants by coverage in window 9:102937753-102937754
2012-10-07 18:36:53,297 - DEBUG - Taking top 8 variants by coverage in window 9:102940384-102940389
2012-10-07 18:36:53,765 - DEBUG - Taking top 8 variants by coverage in window 9:102943969-102943977
2012-10-07 18:36:54,818 - DEBUG - Taking top 8 variants by coverage in window 9:102952074-102952075
2012-10-07 18:36:54,857 - DEBUG - Taking top 8 variants by coverage in window 9:102952141-102952142
2012-10-07 18:36:57,541 - DEBUG - Taking top 8 variants by coverage in window 9:102984733-102984734
2012-10-07 18:36:57,564 - DEBUG - Taking top 8 variants by coverage in window 9:102984734-102984735
2012-10-07 18:36:57,797 - DEBUG - Taking top 8 variants by coverage in window 9:102986996-102986997
2012-10-07 18:36:58,399 - DEBUG - Taking top 8 variants by coverage in window 9:102991686-102991690
2012-10-07 18:36:58,779 - DEBUG - Taking top 8 variants by coverage in window 9:102995625-102995626
2012-10-07 18:36:58,799 - DEBUG - Taking top 8 variants by coverage in window 9:102995627-102995629
2012-10-07 18:37:00,304 - DEBUG - Read 102691 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 18:37:00,684 - DEBUG - Read 111511 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 18:37:01,096 - DEBUG - Read 127748 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 18:37:01,504 - DEBUG - Read 130620 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 18:37:01,896 - DEBUG - Read 120795 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 18:37:02,253 - DEBUG - Read 115706 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 18:37:02,690 - DEBUG - Read 122237 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 18:37:03,101 - DEBUG - Read 111748 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 18:37:03,477 - DEBUG - Read 108408 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 18:37:03,851 - DEBUG - Read 105659 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 18:37:04,230 - DEBUG - Read 118617 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 18:37:04,593 - DEBUG - Read 107100 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 18:37:04,968 - DEBUG - Read 108502 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 18:37:05,336 - DEBUG - Read 120534 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 18:37:05,792 - DEBUG - Read 129810 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 18:37:06,115 - DEBUG - Read 99620 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 18:37:06,500 - DEBUG - Read 123434 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 18:37:06,869 - DEBUG - Read 117691 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 18:37:07,214 - DEBUG - Read 105457 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 18:37:07,576 - DEBUG - Read 101106 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 18:37:07,728 - DEBUG - Detected 27861 variants in 102691 reads
2012-10-07 18:37:07,941 - DEBUG - Detected 40743 variants in 111511 reads
2012-10-07 18:37:08,247 - DEBUG - Detected 50334 variants in 127748 reads
2012-10-07 18:37:08,583 - DEBUG - Detected 60883 variants in 130620 reads
2012-10-07 18:37:08,948 - DEBUG - Detected 68989 variants in 120795 reads
2012-10-07 18:37:09,351 - DEBUG - Detected 76728 variants in 115706 reads
2012-10-07 18:37:09,809 - DEBUG - Detected 91698 variants in 122237 reads
2012-10-07 18:37:10,313 - DEBUG - Detected 99429 variants in 111748 reads
2012-10-07 18:37:10,894 - DEBUG - Detected 106006 variants in 108408 reads
2012-10-07 18:37:11,475 - DEBUG - Detected 112115 variants in 105659 reads
2012-10-07 18:37:12,099 - DEBUG - Detected 117194 variants in 118617 reads
2012-10-07 18:37:12,729 - DEBUG - Detected 121444 variants in 107100 reads
2012-10-07 18:37:13,444 - DEBUG - Detected 126276 variants in 108502 reads
2012-10-07 18:37:14,134 - DEBUG - Detected 131207 variants in 120534 reads
2012-10-07 18:37:14,869 - DEBUG - Detected 139281 variants in 129810 reads
2012-10-07 18:37:15,615 - DEBUG - Detected 143607 variants in 99620 reads
2012-10-07 18:37:16,473 - DEBUG - Detected 147957 variants in 123434 reads
2012-10-07 18:37:17,274 - DEBUG - Detected 152081 variants in 117691 reads
2012-10-07 18:37:18,092 - DEBUG - Detected 157397 variants in 105457 reads
2012-10-07 18:37:18,926 - DEBUG - Detected 162110 variants in 101106 reads
2012-10-07 18:37:20,317 - DEBUG - Taking top 8 variants by coverage in window 9:103001148-103001149
2012-10-07 18:37:20,600 - DEBUG - Taking top 8 variants by coverage in window 9:103002766-103002767
2012-10-07 18:37:20,614 - DEBUG - Taking top 8 variants by coverage in window 9:103002771-103002773
2012-10-07 18:37:21,117 - DEBUG - Taking top 8 variants by coverage in window 9:103006213-103006215
2012-10-07 18:37:21,243 - DEBUG - Taking top 8 variants by coverage in window 9:103007029-103007030
2012-10-07 18:37:21,269 - DEBUG - Taking top 8 variants by coverage in window 9:103007061-103007062
2012-10-07 18:37:21,646 - DEBUG - Taking top 8 variants by coverage in window 9:103010930-103010931
2012-10-07 18:37:21,905 - DEBUG - Taking top 8 variants by coverage in window 9:103013879-103013883
2012-10-07 18:37:22,682 - DEBUG - Taking top 8 variants by coverage in window 9:103022548-103022550
2012-10-07 18:37:23,243 - DEBUG - Taking top 8 variants by coverage in window 9:103027397-103027399
2012-10-07 18:37:23,299 - DEBUG - Taking top 8 variants by coverage in window 9:103027589-103027590
2012-10-07 18:37:24,141 - DEBUG - Taking top 8 variants by coverage in window 9:103033180-103033189
2012-10-07 18:37:24,812 - DEBUG - Taking top 8 variants by coverage in window 9:103038811-103038812
2012-10-07 18:37:26,355 - DEBUG - Taking top 8 variants by coverage in window 9:103048178-103048179
2012-10-07 18:37:26,505 - DEBUG - Taking top 8 variants by coverage in window 9:103048575-103048576
2012-10-07 18:37:27,366 - DEBUG - Taking top 8 variants by coverage in window 9:103054356-103054372
2012-10-07 18:37:27,476 - DEBUG - Taking top 8 variants by coverage in window 9:103054551-103054553
2012-10-07 18:37:28,619 - DEBUG - Taking top 8 variants by coverage in window 9:103062411-103062417
2012-10-07 18:37:28,676 - DEBUG - Taking top 8 variants by coverage in window 9:103062440-103062441
2012-10-07 18:37:29,505 - DEBUG - Taking top 8 variants by coverage in window 9:103065870-103065871
2012-10-07 18:37:30,024 - DEBUG - Taking top 8 variants by coverage in window 9:103070831-103070832
2012-10-07 18:37:32,536 - DEBUG - Taking top 8 variants by coverage in window 9:103087179-103087180
2012-10-07 18:37:32,681 - DEBUG - Taking top 8 variants by coverage in window 9:103089023-103089035
2012-10-07 18:37:33,083 - DEBUG - Taking top 8 variants by coverage in window 9:103092028-103092029
2012-10-07 18:37:33,832 - DEBUG - Taking top 8 variants by coverage in window 9:103097757-103097759
2012-10-07 18:37:34,668 - DEBUG - Taking top 8 variants by coverage in window 9:103109688-103109689
2012-10-07 18:37:34,809 - DEBUG - Taking top 8 variants by coverage in window 9:103109794-103109802
2012-10-07 18:37:35,081 - DEBUG - Taking top 8 variants by coverage in window 9:103109814-103109817
2012-10-07 18:37:35,990 - DEBUG - Taking top 8 variants by coverage in window 9:103121381-103121382
2012-10-07 18:37:36,186 - DEBUG - Taking top 8 variants by coverage in window 9:103125011-103125013
2012-10-07 18:37:36,758 - DEBUG - Taking top 8 variants by coverage in window 9:103131336-103131337
2012-10-07 18:37:36,902 - DEBUG - Taking top 8 variants by coverage in window 9:103132795-103132796
2012-10-07 18:37:37,016 - DEBUG - Taking top 8 variants by coverage in window 9:103133741-103133742
2012-10-07 18:37:37,547 - DEBUG - Taking top 8 variants by coverage in window 9:103139690-103139691
2012-10-07 18:37:37,839 - DEBUG - Taking top 8 variants by coverage in window 9:103142938-103142939
2012-10-07 18:37:38,136 - DEBUG - Taking top 8 variants by coverage in window 9:103144909-103144921
2012-10-07 18:37:38,355 - DEBUG - Taking top 8 variants by coverage in window 9:103146842-103146846
2012-10-07 18:37:38,877 - DEBUG - Taking top 8 variants by coverage in window 9:103149906-103149907
2012-10-07 18:37:38,911 - DEBUG - Taking top 8 variants by coverage in window 9:103149910-103149911
2012-10-07 18:37:39,046 - DEBUG - Taking top 8 variants by coverage in window 9:103149949-103149950
2012-10-07 18:37:39,060 - DEBUG - Taking top 8 variants by coverage in window 9:103149950-103149951
2012-10-07 18:37:39,124 - DEBUG - Taking top 8 variants by coverage in window 9:103149954-103149955
2012-10-07 18:37:39,153 - DEBUG - Taking top 8 variants by coverage in window 9:103149955-103149960
2012-10-07 18:37:39,495 - DEBUG - Taking top 8 variants by coverage in window 9:103149968-103149969
2012-10-07 18:37:41,966 - DEBUG - Taking top 8 variants by coverage in window 9:103162612-103162614
2012-10-07 18:37:42,223 - DEBUG - Taking top 8 variants by coverage in window 9:103163903-103163906
2012-10-07 18:37:42,286 - DEBUG - Taking top 8 variants by coverage in window 9:103163907-103163908
2012-10-07 18:37:42,309 - DEBUG - Taking top 8 variants by coverage in window 9:103163910-103163911
2012-10-07 18:37:42,392 - DEBUG - Taking top 8 variants by coverage in window 9:103163931-103163932
2012-10-07 18:37:42,684 - DEBUG - Taking top 8 variants by coverage in window 9:103166089-103166090
2012-10-07 18:37:43,291 - DEBUG - Taking top 8 variants by coverage in window 9:103174213-103174214
2012-10-07 18:37:43,447 - DEBUG - Taking top 8 variants by coverage in window 9:103175999-103176011
2012-10-07 18:37:43,513 - DEBUG - Taking top 8 variants by coverage in window 9:103176030-103176036
2012-10-07 18:37:43,551 - DEBUG - Taking top 8 variants by coverage in window 9:103176038-103176041
2012-10-07 18:37:43,822 - DEBUG - Taking top 8 variants by coverage in window 9:103176058-103176059
2012-10-07 18:37:43,922 - DEBUG - Taking top 8 variants by coverage in window 9:103176064-103176065
2012-10-07 18:37:43,985 - DEBUG - Taking top 8 variants by coverage in window 9:103176066-103176067
2012-10-07 18:37:44,127 - DEBUG - Taking top 8 variants by coverage in window 9:103176076-103176077
2012-10-07 18:37:44,199 - DEBUG - Taking top 8 variants by coverage in window 9:103176080-103176082
2012-10-07 18:37:44,944 - DEBUG - Taking top 8 variants by coverage in window 9:103176114-103176115
2012-10-07 18:37:45,130 - DEBUG - Taking top 8 variants by coverage in window 9:103176116-103176117
2012-10-07 18:37:45,190 - DEBUG - Taking top 8 variants by coverage in window 9:103176118-103176119
2012-10-07 18:37:45,457 - DEBUG - Taking top 8 variants by coverage in window 9:103176132-103176133
2012-10-07 18:37:45,704 - DEBUG - Taking top 8 variants by coverage in window 9:103176162-103176166
2012-10-07 18:37:47,219 - DEBUG - Taking top 8 variants by coverage in window 9:103185968-103185969
2012-10-07 18:37:47,629 - DEBUG - Taking top 8 variants by coverage in window 9:103188611-103188617
2012-10-07 18:37:48,346 - DEBUG - Taking top 8 variants by coverage in window 9:103193290-103193291
2012-10-07 18:37:49,253 - DEBUG - Taking top 8 variants by coverage in window 9:103204301-103204311
2012-10-07 18:37:49,633 - DEBUG - Taking top 8 variants by coverage in window 9:103208951-103208955
2012-10-07 18:37:49,642 - DEBUG - Taking top 8 variants by coverage in window 9:103208956-103208957
2012-10-07 18:37:49,894 - DEBUG - Taking top 8 variants by coverage in window 9:103212339-103212340
2012-10-07 18:37:49,985 - DEBUG - Taking top 8 variants by coverage in window 9:103212400-103212401
2012-10-07 18:37:50,804 - DEBUG - Taking top 8 variants by coverage in window 9:103227786-103227787
2012-10-07 18:37:51,613 - DEBUG - Taking top 8 variants by coverage in window 9:103240737-103240739
2012-10-07 18:37:51,772 - DEBUG - Taking top 8 variants by coverage in window 9:103242682-103242685
2012-10-07 18:37:51,854 - DEBUG - Taking top 8 variants by coverage in window 9:103243250-103243251
2012-10-07 18:37:52,940 - DEBUG - Taking top 8 variants by coverage in window 9:103261257-103261260
2012-10-07 18:37:53,341 - DEBUG - Taking top 8 variants by coverage in window 9:103266750-103266758
2012-10-07 18:37:53,384 - DEBUG - Taking top 8 variants by coverage in window 9:103267460-103267461
2012-10-07 18:37:54,168 - DEBUG - Taking top 8 variants by coverage in window 9:103271937-103271957
2012-10-07 18:37:54,213 - DEBUG - Taking top 8 variants by coverage in window 9:103271996-103271997
2012-10-07 18:37:54,448 - DEBUG - Taking top 8 variants by coverage in window 9:103274244-103274249
2012-10-07 18:37:54,644 - DEBUG - Taking top 8 variants by coverage in window 9:103275455-103275461
2012-10-07 18:37:55,129 - DEBUG - Taking top 8 variants by coverage in window 9:103279568-103279587
2012-10-07 18:37:55,523 - DEBUG - Taking top 8 variants by coverage in window 9:103282459-103282460
2012-10-07 18:37:56,382 - DEBUG - Taking top 8 variants by coverage in window 9:103290494-103290495
2012-10-07 18:37:57,239 - DEBUG - Taking top 8 variants by coverage in window 9:103296352-103296353
2012-10-07 18:37:57,354 - DEBUG - Taking top 8 variants by coverage in window 9:103296461-103296462
2012-10-07 18:37:57,455 - DEBUG - Taking top 8 variants by coverage in window 9:103297337-103297338
2012-10-07 18:37:58,366 - DEBUG - Taking top 8 variants by coverage in window 9:103308741-103308742
2012-10-07 18:38:00,007 - DEBUG - Taking top 8 variants by coverage in window 9:103321703-103321705
2012-10-07 18:38:01,796 - DEBUG - Taking top 8 variants by coverage in window 9:103337599-103337609
2012-10-07 18:38:02,150 - DEBUG - Taking top 8 variants by coverage in window 9:103340444-103340447
2012-10-07 18:38:02,198 - DEBUG - Taking top 8 variants by coverage in window 9:103340459-103340460
2012-10-07 18:38:02,800 - DEBUG - Taking top 8 variants by coverage in window 9:103343967-103343977
2012-10-07 18:38:04,712 - DEBUG - Taking top 8 variants by coverage in window 9:103344599-103344602
2012-10-07 18:38:04,853 - DEBUG - Taking top 8 variants by coverage in window 9:103345349-103345350
2012-10-07 18:38:04,971 - DEBUG - Taking top 8 variants by coverage in window 9:103346482-103346485
2012-10-07 18:38:05,373 - DEBUG - Taking top 8 variants by coverage in window 9:103349131-103349133
2012-10-07 18:38:05,540 - DEBUG - Taking top 8 variants by coverage in window 9:103350365-103350367
2012-10-07 18:38:05,731 - DEBUG - Taking top 8 variants by coverage in window 9:103351344-103351346
2012-10-07 18:38:05,867 - DEBUG - Taking top 8 variants by coverage in window 9:103352783-103352784
2012-10-07 18:38:06,226 - DEBUG - Taking top 8 variants by coverage in window 9:103354891-103354892
2012-10-07 18:38:06,461 - DEBUG - Taking top 8 variants by coverage in window 9:103355296-103355297
2012-10-07 18:38:06,552 - DEBUG - Taking top 8 variants by coverage in window 9:103355940-103355942
2012-10-07 18:38:07,065 - DEBUG - Taking top 8 variants by coverage in window 9:103358462-103358463
2012-10-07 18:38:07,125 - DEBUG - Taking top 8 variants by coverage in window 9:103358743-103358745
2012-10-07 18:38:07,159 - DEBUG - Taking top 8 variants by coverage in window 9:103359325-103359326
2012-10-07 18:38:07,629 - DEBUG - Taking top 8 variants by coverage in window 9:103361433-103361443
2012-10-07 18:38:08,370 - DEBUG - Taking top 8 variants by coverage in window 9:103364733-103364734
2012-10-07 18:38:08,652 - DEBUG - Taking top 8 variants by coverage in window 9:103367793-103367794
2012-10-07 18:38:08,920 - DEBUG - Taking top 8 variants by coverage in window 9:103369239-103369246
2012-10-07 18:38:10,413 - DEBUG - Taking top 8 variants by coverage in window 9:103387168-103387169
2012-10-07 18:38:10,741 - DEBUG - Taking top 8 variants by coverage in window 9:103389699-103389700
2012-10-07 18:38:11,512 - DEBUG - Taking top 8 variants by coverage in window 9:103395895-103395897
2012-10-07 18:38:11,637 - DEBUG - Taking top 8 variants by coverage in window 9:103396435-103396436
2012-10-07 18:38:12,786 - DEBUG - Taking top 8 variants by coverage in window 9:103407358-103407359
2012-10-07 18:38:14,310 - DEBUG - Taking top 8 variants by coverage in window 9:103421752-103421753
2012-10-07 18:38:14,387 - DEBUG - Taking top 8 variants by coverage in window 9:103422711-103422713
2012-10-07 18:38:14,478 - DEBUG - Taking top 8 variants by coverage in window 9:103422945-103422946
2012-10-07 18:38:15,883 - DEBUG - Taking top 8 variants by coverage in window 9:103433614-103433615
2012-10-07 18:38:15,904 - DEBUG - Taking top 8 variants by coverage in window 9:103433621-103433622
2012-10-07 18:38:16,855 - DEBUG - Taking top 8 variants by coverage in window 9:103441400-103441401
2012-10-07 18:38:17,005 - DEBUG - Taking top 8 variants by coverage in window 9:103441841-103441849
2012-10-07 18:38:17,216 - DEBUG - Taking top 8 variants by coverage in window 9:103444927-103444928
2012-10-07 18:38:17,263 - DEBUG - Taking top 8 variants by coverage in window 9:103445017-103445018
2012-10-07 18:38:17,293 - DEBUG - Taking top 8 variants by coverage in window 9:103445267-103445268
2012-10-07 18:38:18,150 - DEBUG - Taking top 8 variants by coverage in window 9:103455556-103455557
2012-10-07 18:38:20,208 - DEBUG - Taking top 8 variants by coverage in window 9:103479129-103479130
2012-10-07 18:38:20,280 - DEBUG - Taking top 8 variants by coverage in window 9:103479980-103479981
2012-10-07 18:38:20,991 - DEBUG - Taking top 8 variants by coverage in window 9:103485308-103485309
2012-10-07 18:38:21,224 - DEBUG - Taking top 8 variants by coverage in window 9:103487827-103487830
2012-10-07 18:38:21,266 - DEBUG - Taking top 8 variants by coverage in window 9:103488120-103488123
2012-10-07 18:38:21,338 - DEBUG - Taking top 8 variants by coverage in window 9:103488161-103488162
2012-10-07 18:38:23,015 - DEBUG - Taking top 8 variants by coverage in window 9:103506374-103506375
2012-10-07 18:38:23,098 - DEBUG - Taking top 8 variants by coverage in window 9:103506526-103506527
2012-10-07 18:38:23,320 - DEBUG - Taking top 8 variants by coverage in window 9:103508601-103508602
2012-10-07 18:38:23,504 - DEBUG - Taking top 8 variants by coverage in window 9:103510289-103510291
2012-10-07 18:38:23,749 - DEBUG - Taking top 8 variants by coverage in window 9:103512227-103512229
2012-10-07 18:38:23,801 - DEBUG - Taking top 8 variants by coverage in window 9:103512255-103512256
2012-10-07 18:38:24,072 - DEBUG - Taking top 8 variants by coverage in window 9:103516893-103516894
2012-10-07 18:38:24,092 - DEBUG - Taking top 8 variants by coverage in window 9:103516915-103516916
2012-10-07 18:38:24,143 - DEBUG - Taking top 8 variants by coverage in window 9:103517026-103517029
2012-10-07 18:38:24,162 - DEBUG - Taking top 8 variants by coverage in window 9:103517031-103517032
2012-10-07 18:38:24,809 - DEBUG - Taking top 8 variants by coverage in window 9:103524195-103524196
2012-10-07 18:38:25,213 - DEBUG - Taking top 8 variants by coverage in window 9:103530620-103530621
2012-10-07 18:38:25,414 - DEBUG - Taking top 8 variants by coverage in window 9:103532878-103532890
2012-10-07 18:38:25,444 - DEBUG - Taking top 8 variants by coverage in window 9:103533018-103533019
2012-10-07 18:38:25,575 - DEBUG - Taking top 8 variants by coverage in window 9:103534210-103534211
2012-10-07 18:38:25,743 - DEBUG - Taking top 8 variants by coverage in window 9:103535512-103535513
2012-10-07 18:38:26,954 - DEBUG - Taking top 8 variants by coverage in window 9:103550669-103550670
2012-10-07 18:38:27,024 - DEBUG - Taking top 8 variants by coverage in window 9:103550934-103550935
2012-10-07 18:38:28,214 - DEBUG - Taking top 8 variants by coverage in window 9:103554020-103554021
2012-10-07 18:38:28,259 - DEBUG - Taking top 8 variants by coverage in window 9:103554196-103554197
2012-10-07 18:38:29,779 - DEBUG - Taking top 8 variants by coverage in window 9:103571938-103571939
2012-10-07 18:38:30,319 - DEBUG - Taking top 8 variants by coverage in window 9:103580549-103580558
2012-10-07 18:38:30,436 - DEBUG - Taking top 8 variants by coverage in window 9:103581997-103581999
2012-10-07 18:38:31,144 - DEBUG - Taking top 8 variants by coverage in window 9:103595811-103595812
2012-10-07 18:38:31,165 - DEBUG - Taking top 8 variants by coverage in window 9:103595819-103595820
2012-10-07 18:38:31,378 - DEBUG - Taking top 8 variants by coverage in window 9:103598712-103598715
2012-10-07 18:38:31,476 - DEBUG - Taking top 8 variants by coverage in window 9:103599746-103599749
2012-10-07 18:38:31,696 - DEBUG - Taking top 8 variants by coverage in window 9:103602992-103602994
2012-10-07 18:38:31,898 - DEBUG - Taking top 8 variants by coverage in window 9:103605328-103605329
2012-10-07 18:38:31,907 - DEBUG - Taking top 8 variants by coverage in window 9:103605333-103605334
2012-10-07 18:38:32,019 - DEBUG - Taking top 8 variants by coverage in window 9:103606176-103606177
2012-10-07 18:38:32,354 - DEBUG - Taking top 8 variants by coverage in window 9:103611914-103611915
2012-10-07 18:38:32,783 - DEBUG - Taking top 8 variants by coverage in window 9:103614862-103614863
2012-10-07 18:38:32,926 - DEBUG - Taking top 8 variants by coverage in window 9:103617230-103617231
2012-10-07 18:38:33,635 - DEBUG - Taking top 8 variants by coverage in window 9:103625820-103625821
2012-10-07 18:38:33,682 - DEBUG - Taking top 8 variants by coverage in window 9:103626736-103626737
2012-10-07 18:38:34,034 - DEBUG - Taking top 8 variants by coverage in window 9:103629845-103629846
2012-10-07 18:38:34,767 - DEBUG - Taking top 8 variants by coverage in window 9:103640552-103640553
2012-10-07 18:38:34,871 - DEBUG - Taking top 8 variants by coverage in window 9:103641877-103641889
2012-10-07 18:38:35,136 - DEBUG - Taking top 8 variants by coverage in window 9:103643033-103643034
2012-10-07 18:38:35,219 - DEBUG - Taking top 8 variants by coverage in window 9:103643094-103643095
2012-10-07 18:38:35,337 - DEBUG - Taking top 8 variants by coverage in window 9:103644853-103644854
2012-10-07 18:38:36,050 - DEBUG - Taking top 8 variants by coverage in window 9:103652459-103652460
2012-10-07 18:38:36,561 - DEBUG - Taking top 8 variants by coverage in window 9:103657811-103657821
2012-10-07 18:38:36,966 - DEBUG - Taking top 8 variants by coverage in window 9:103660491-103660494
2012-10-07 18:38:37,371 - DEBUG - Taking top 8 variants by coverage in window 9:103665412-103665413
2012-10-07 18:38:37,806 - DEBUG - Taking top 8 variants by coverage in window 9:103673165-103673179
2012-10-07 18:38:38,210 - DEBUG - Taking top 8 variants by coverage in window 9:103677799-103677800
2012-10-07 18:38:38,229 - DEBUG - Taking top 8 variants by coverage in window 9:103677802-103677803
2012-10-07 18:38:39,168 - DEBUG - Taking top 8 variants by coverage in window 9:103687638-103687639
2012-10-07 18:38:39,195 - DEBUG - Taking top 8 variants by coverage in window 9:103687921-103687922
2012-10-07 18:38:39,883 - DEBUG - Taking top 8 variants by coverage in window 9:103694371-103694378
2012-10-07 18:38:40,559 - DEBUG - Taking top 8 variants by coverage in window 9:103705528-103705533
2012-10-07 18:38:40,853 - DEBUG - Taking top 8 variants by coverage in window 9:103708809-103708810
2012-10-07 18:38:40,950 - DEBUG - Taking top 8 variants by coverage in window 9:103709489-103709490
2012-10-07 18:38:41,017 - DEBUG - Taking top 8 variants by coverage in window 9:103709887-103709889
2012-10-07 18:38:41,173 - DEBUG - Taking top 8 variants by coverage in window 9:103710573-103710575
2012-10-07 18:38:41,217 - DEBUG - Taking top 8 variants by coverage in window 9:103710681-103710682
2012-10-07 18:38:41,299 - DEBUG - Taking top 8 variants by coverage in window 9:103711288-103711292
2012-10-07 18:38:41,328 - DEBUG - Taking top 8 variants by coverage in window 9:103711339-103711340
2012-10-07 18:38:41,469 - DEBUG - Taking top 8 variants by coverage in window 9:103712133-103712136
2012-10-07 18:38:41,779 - DEBUG - Taking top 8 variants by coverage in window 9:103713872-103713873
2012-10-07 18:38:41,843 - DEBUG - Taking top 8 variants by coverage in window 9:103714277-103714278
2012-10-07 18:38:43,424 - DEBUG - Taking top 8 variants by coverage in window 9:103727806-103727820
2012-10-07 18:38:43,436 - DEBUG - Taking top 8 variants by coverage in window 9:103727821-103727822
2012-10-07 18:38:43,442 - DEBUG - Taking top 8 variants by coverage in window 9:103727822-103727823
2012-10-07 18:38:43,656 - DEBUG - Taking top 8 variants by coverage in window 9:103729339-103729340
2012-10-07 18:38:44,179 - DEBUG - Taking top 8 variants by coverage in window 9:103735189-103735190
2012-10-07 18:38:44,771 - DEBUG - Taking top 8 variants by coverage in window 9:103742659-103742660
2012-10-07 18:38:44,844 - DEBUG - Taking top 8 variants by coverage in window 9:103742823-103742824
2012-10-07 18:38:44,867 - DEBUG - Taking top 8 variants by coverage in window 9:103742844-103742849
2012-10-07 18:38:45,768 - DEBUG - Taking top 8 variants by coverage in window 9:103750083-103750087
2012-10-07 18:38:46,421 - DEBUG - Taking top 8 variants by coverage in window 9:103754448-103754449
2012-10-07 18:38:46,486 - DEBUG - Taking top 8 variants by coverage in window 9:103754948-103754949
2012-10-07 18:38:46,705 - DEBUG - Taking top 8 variants by coverage in window 9:103757428-103757429
2012-10-07 18:38:46,783 - DEBUG - Taking top 8 variants by coverage in window 9:103759197-103759198
2012-10-07 18:38:46,964 - DEBUG - Taking top 8 variants by coverage in window 9:103762780-103762781
2012-10-07 18:38:46,982 - DEBUG - Taking top 8 variants by coverage in window 9:103762793-103762794
2012-10-07 18:38:46,991 - DEBUG - Taking top 8 variants by coverage in window 9:103762794-103762795
2012-10-07 18:38:47,221 - DEBUG - Taking top 8 variants by coverage in window 9:103767293-103767294
2012-10-07 18:38:47,540 - DEBUG - Taking top 8 variants by coverage in window 9:103774868-103774869
2012-10-07 18:38:48,109 - DEBUG - Taking top 8 variants by coverage in window 9:103780631-103780632
2012-10-07 18:38:48,423 - DEBUG - Taking top 8 variants by coverage in window 9:103783123-103783124
2012-10-07 18:38:49,313 - DEBUG - Taking top 8 variants by coverage in window 9:103792048-103792049
2012-10-07 18:38:50,558 - DEBUG - Taking top 8 variants by coverage in window 9:103807843-103807847
2012-10-07 18:38:50,597 - DEBUG - Taking top 8 variants by coverage in window 9:103807919-103807920
2012-10-07 18:38:50,743 - DEBUG - Taking top 8 variants by coverage in window 9:103809958-103809959
2012-10-07 18:38:50,966 - DEBUG - Taking top 8 variants by coverage in window 9:103813146-103813147
2012-10-07 18:38:51,599 - DEBUG - Taking top 8 variants by coverage in window 9:103819183-103819184
2012-10-07 18:38:51,903 - DEBUG - Taking top 8 variants by coverage in window 9:103823665-103823666
2012-10-07 18:38:52,516 - DEBUG - Taking top 8 variants by coverage in window 9:103830911-103830912
2012-10-07 18:38:52,922 - DEBUG - Taking top 8 variants by coverage in window 9:103834821-103834822
2012-10-07 18:38:52,962 - DEBUG - Taking top 8 variants by coverage in window 9:103834827-103834828
2012-10-07 18:38:54,094 - DEBUG - Taking top 8 variants by coverage in window 9:103845255-103845256
2012-10-07 18:38:54,130 - DEBUG - Taking top 8 variants by coverage in window 9:103845294-103845296
2012-10-07 18:38:54,348 - DEBUG - Taking top 8 variants by coverage in window 9:103847211-103847212
2012-10-07 18:38:54,777 - DEBUG - Taking top 8 variants by coverage in window 9:103851087-103851088
2012-10-07 18:38:55,171 - DEBUG - Taking top 8 variants by coverage in window 9:103854608-103854609
2012-10-07 18:38:55,208 - DEBUG - Taking top 8 variants by coverage in window 9:103854697-103854708
2012-10-07 18:38:55,280 - DEBUG - Taking top 8 variants by coverage in window 9:103855064-103855065
2012-10-07 18:38:55,452 - DEBUG - Taking top 8 variants by coverage in window 9:103856024-103856025
2012-10-07 18:38:55,638 - DEBUG - Taking top 8 variants by coverage in window 9:103857086-103857096
2012-10-07 18:38:55,864 - DEBUG - Taking top 8 variants by coverage in window 9:103859017-103859018
2012-10-07 18:38:56,301 - DEBUG - Taking top 8 variants by coverage in window 9:103863374-103863378
2012-10-07 18:38:57,090 - DEBUG - Taking top 8 variants by coverage in window 9:103872880-103872883
2012-10-07 18:38:57,217 - DEBUG - Taking top 8 variants by coverage in window 9:103872910-103872911
2012-10-07 18:38:59,907 - DEBUG - Taking top 8 variants by coverage in window 9:103897223-103897224
2012-10-07 18:39:00,166 - DEBUG - Taking top 8 variants by coverage in window 9:103899982-103899983
2012-10-07 18:39:01,113 - DEBUG - Taking top 8 variants by coverage in window 9:103908284-103908286
2012-10-07 18:39:02,263 - DEBUG - Taking top 8 variants by coverage in window 9:103918159-103918167
2012-10-07 18:39:02,428 - DEBUG - Taking top 8 variants by coverage in window 9:103919144-103919146
2012-10-07 18:39:03,255 - DEBUG - Taking top 8 variants by coverage in window 9:103924835-103924849
2012-10-07 18:39:03,549 - DEBUG - Taking top 8 variants by coverage in window 9:103926817-103926818
2012-10-07 18:39:03,670 - DEBUG - Taking top 8 variants by coverage in window 9:103927341-103927342
2012-10-07 18:39:03,680 - DEBUG - Taking top 8 variants by coverage in window 9:103927356-103927357
2012-10-07 18:39:05,861 - DEBUG - Taking top 8 variants by coverage in window 9:103940213-103940216
2012-10-07 18:39:06,323 - DEBUG - Taking top 8 variants by coverage in window 9:103944988-103944989
2012-10-07 18:39:06,438 - DEBUG - Taking top 8 variants by coverage in window 9:103945513-103945523
2012-10-07 18:39:06,631 - DEBUG - Taking top 8 variants by coverage in window 9:103945578-103945579
2012-10-07 18:39:08,937 - DEBUG - Taking top 8 variants by coverage in window 9:103966801-103966805
2012-10-07 18:39:09,633 - DEBUG - Taking top 8 variants by coverage in window 9:103969618-103969619
2012-10-07 18:39:09,642 - DEBUG - Taking top 8 variants by coverage in window 9:103969621-103969624
2012-10-07 18:39:09,894 - DEBUG - Taking top 8 variants by coverage in window 9:103972686-103972688
2012-10-07 18:39:10,378 - DEBUG - Taking top 8 variants by coverage in window 9:103976432-103976438
2012-10-07 18:39:10,669 - DEBUG - Taking top 8 variants by coverage in window 9:103978983-103978984
2012-10-07 18:39:10,789 - DEBUG - Taking top 8 variants by coverage in window 9:103980246-103980254
2012-10-07 18:39:10,848 - DEBUG - Taking top 8 variants by coverage in window 9:103980280-103980281
2012-10-07 18:39:10,959 - DEBUG - Taking top 8 variants by coverage in window 9:103981114-103981116
2012-10-07 18:39:11,242 - DEBUG - Taking top 8 variants by coverage in window 9:103982586-103982587
2012-10-07 18:39:11,317 - DEBUG - Taking top 8 variants by coverage in window 9:103982602-103982603
2012-10-07 18:39:12,177 - DEBUG - Taking top 8 variants by coverage in window 9:103988330-103988331
2012-10-07 18:39:12,512 - DEBUG - Taking top 8 variants by coverage in window 9:103992495-103992496
2012-10-07 18:39:14,134 - DEBUG - Read 98041 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 18:39:14,491 - DEBUG - Read 106256 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 18:39:14,850 - DEBUG - Read 123240 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 18:39:15,239 - DEBUG - Read 122950 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 18:39:15,594 - DEBUG - Read 117027 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 18:39:15,907 - DEBUG - Read 112062 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 18:39:16,257 - DEBUG - Read 117988 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 18:39:16,623 - DEBUG - Read 106679 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 18:39:16,982 - DEBUG - Read 101597 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 18:39:17,327 - DEBUG - Read 103294 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 18:39:17,764 - DEBUG - Read 113195 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 18:39:18,102 - DEBUG - Read 102947 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 18:39:18,452 - DEBUG - Read 104042 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 18:39:18,821 - DEBUG - Read 113568 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 18:39:19,227 - DEBUG - Read 123270 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 18:39:19,567 - DEBUG - Read 95120 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 18:39:19,934 - DEBUG - Read 118244 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 18:39:20,320 - DEBUG - Read 113928 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 18:39:20,637 - DEBUG - Read 97795 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 18:39:20,991 - DEBUG - Read 98283 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 18:39:21,103 - DEBUG - Detected 25059 variants in 98041 reads
2012-10-07 18:39:21,283 - DEBUG - Detected 34456 variants in 106256 reads
2012-10-07 18:39:21,532 - DEBUG - Detected 43972 variants in 123240 reads
2012-10-07 18:39:21,809 - DEBUG - Detected 51893 variants in 122950 reads
2012-10-07 18:39:22,116 - DEBUG - Detected 58372 variants in 117027 reads
2012-10-07 18:39:22,445 - DEBUG - Detected 64181 variants in 112062 reads
2012-10-07 18:39:22,819 - DEBUG - Detected 77564 variants in 117988 reads
2012-10-07 18:39:23,242 - DEBUG - Detected 83522 variants in 106679 reads
2012-10-07 18:39:23,690 - DEBUG - Detected 89318 variants in 101597 reads
2012-10-07 18:39:24,211 - DEBUG - Detected 94318 variants in 103294 reads
2012-10-07 18:39:24,719 - DEBUG - Detected 99134 variants in 113195 reads
2012-10-07 18:39:25,243 - DEBUG - Detected 103216 variants in 102947 reads
2012-10-07 18:39:25,788 - DEBUG - Detected 107373 variants in 104042 reads
2012-10-07 18:39:26,358 - DEBUG - Detected 111502 variants in 113568 reads
2012-10-07 18:39:27,014 - DEBUG - Detected 118908 variants in 123270 reads
2012-10-07 18:39:27,629 - DEBUG - Detected 123227 variants in 95120 reads
2012-10-07 18:39:28,290 - DEBUG - Detected 127120 variants in 118244 reads
2012-10-07 18:39:28,969 - DEBUG - Detected 131420 variants in 113928 reads
2012-10-07 18:39:29,648 - DEBUG - Detected 135627 variants in 97795 reads
2012-10-07 18:39:30,414 - DEBUG - Detected 139833 variants in 98283 reads
2012-10-07 18:39:31,460 - DEBUG - Taking top 8 variants by coverage in window 9:104000949-104000950
2012-10-07 18:39:32,666 - DEBUG - Taking top 8 variants by coverage in window 9:104021905-104021906
2012-10-07 18:39:33,050 - DEBUG - Taking top 8 variants by coverage in window 9:104025127-104025128
2012-10-07 18:39:33,187 - DEBUG - Taking top 8 variants by coverage in window 9:104026894-104026896
2012-10-07 18:39:33,195 - DEBUG - Taking top 8 variants by coverage in window 9:104026897-104026907
2012-10-07 18:39:33,639 - DEBUG - Taking top 8 variants by coverage in window 9:104031926-104031928
2012-10-07 18:39:33,839 - DEBUG - Taking top 8 variants by coverage in window 9:104033342-104033343
2012-10-07 18:39:34,107 - DEBUG - Taking top 8 variants by coverage in window 9:104034654-104034655
2012-10-07 18:39:34,399 - DEBUG - Taking top 8 variants by coverage in window 9:104037860-104037861
2012-10-07 18:39:34,416 - DEBUG - Taking top 8 variants by coverage in window 9:104038060-104038061
2012-10-07 18:39:34,489 - DEBUG - Taking top 8 variants by coverage in window 9:104038326-104038327
2012-10-07 18:39:34,692 - DEBUG - Taking top 8 variants by coverage in window 9:104039515-104039538
2012-10-07 18:39:35,003 - DEBUG - Taking top 8 variants by coverage in window 9:104044500-104044501
2012-10-07 18:39:35,019 - DEBUG - Taking top 8 variants by coverage in window 9:104044505-104044506
2012-10-07 18:39:36,029 - DEBUG - Taking top 8 variants by coverage in window 9:104058231-104058232
2012-10-07 18:39:36,652 - DEBUG - Taking top 8 variants by coverage in window 9:104068624-104068625
2012-10-07 18:39:36,686 - DEBUG - Taking top 8 variants by coverage in window 9:104068627-104068628
2012-10-07 18:39:36,713 - DEBUG - Taking top 8 variants by coverage in window 9:104068628-104068629
2012-10-07 18:39:36,803 - DEBUG - Taking top 8 variants by coverage in window 9:104068647-104068648
2012-10-07 18:39:37,035 - DEBUG - Taking top 8 variants by coverage in window 9:104069694-104069695
2012-10-07 18:39:37,201 - DEBUG - Taking top 8 variants by coverage in window 9:104071164-104071165
2012-10-07 18:39:37,538 - DEBUG - Taking top 8 variants by coverage in window 9:104075962-104075966
2012-10-07 18:39:37,556 - DEBUG - Taking top 8 variants by coverage in window 9:104076010-104076014
2012-10-07 18:39:38,551 - DEBUG - Taking top 8 variants by coverage in window 9:104093367-104093368
2012-10-07 18:39:38,709 - DEBUG - Taking top 8 variants by coverage in window 9:104097635-104097636
2012-10-07 18:39:40,274 - DEBUG - Taking top 8 variants by coverage in window 9:104121950-104121951
2012-10-07 18:39:40,445 - DEBUG - Taking top 8 variants by coverage in window 9:104124368-104124373
2012-10-07 18:39:40,896 - DEBUG - Taking top 8 variants by coverage in window 9:104137442-104137443
2012-10-07 18:39:41,828 - DEBUG - Taking top 8 variants by coverage in window 9:104147539-104147540
2012-10-07 18:39:42,230 - DEBUG - Taking top 8 variants by coverage in window 9:104151804-104151812
2012-10-07 18:39:43,322 - DEBUG - Taking top 8 variants by coverage in window 9:104168418-104168419
2012-10-07 18:39:43,464 - DEBUG - Taking top 8 variants by coverage in window 9:104170164-104170165
2012-10-07 18:39:43,700 - DEBUG - Taking top 8 variants by coverage in window 9:104174414-104174415
2012-10-07 18:39:43,881 - DEBUG - Taking top 8 variants by coverage in window 9:104175324-104175325
2012-10-07 18:39:44,219 - DEBUG - Taking top 8 variants by coverage in window 9:104179072-104179073
2012-10-07 18:39:44,590 - DEBUG - Taking top 8 variants by coverage in window 9:104184406-104184407
2012-10-07 18:39:44,747 - DEBUG - Taking top 8 variants by coverage in window 9:104185615-104185616
2012-10-07 18:39:44,958 - DEBUG - Taking top 8 variants by coverage in window 9:104189099-104189101
2012-10-07 18:39:45,360 - DEBUG - Taking top 8 variants by coverage in window 9:104193314-104193315
2012-10-07 18:39:47,106 - DEBUG - Taking top 8 variants by coverage in window 9:104210062-104210063
2012-10-07 18:39:47,565 - DEBUG - Taking top 8 variants by coverage in window 9:104212484-104212485
2012-10-07 18:39:47,630 - DEBUG - Taking top 8 variants by coverage in window 9:104212574-104212575
2012-10-07 18:39:47,647 - DEBUG - Taking top 8 variants by coverage in window 9:104212595-104212599
2012-10-07 18:39:47,892 - DEBUG - Taking top 8 variants by coverage in window 9:104213546-104213547
2012-10-07 18:39:47,909 - DEBUG - Taking top 8 variants by coverage in window 9:104213550-104213551
2012-10-07 18:39:48,245 - DEBUG - Taking top 8 variants by coverage in window 9:104215319-104215320
2012-10-07 18:39:48,369 - DEBUG - Taking top 8 variants by coverage in window 9:104215583-104215584
2012-10-07 18:39:48,457 - DEBUG - Taking top 8 variants by coverage in window 9:104215853-104215857
2012-10-07 18:39:49,281 - DEBUG - Taking top 8 variants by coverage in window 9:104222030-104222031
2012-10-07 18:39:50,613 - DEBUG - Taking top 8 variants by coverage in window 9:104236777-104236783
2012-10-07 18:39:52,550 - DEBUG - Taking top 8 variants by coverage in window 9:104251461-104251465
2012-10-07 18:39:52,675 - DEBUG - Taking top 8 variants by coverage in window 9:104251957-104251958
2012-10-07 18:39:53,261 - DEBUG - Taking top 8 variants by coverage in window 9:104256529-104256530
2012-10-07 18:39:53,668 - DEBUG - Taking top 8 variants by coverage in window 9:104258954-104258955
2012-10-07 18:39:53,727 - DEBUG - Taking top 8 variants by coverage in window 9:104258966-104258969
2012-10-07 18:39:53,842 - DEBUG - Taking top 8 variants by coverage in window 9:104258980-104258982
2012-10-07 18:39:54,151 - DEBUG - Taking top 8 variants by coverage in window 9:104259885-104259886
2012-10-07 18:39:54,225 - DEBUG - Taking top 8 variants by coverage in window 9:104259993-104260002
2012-10-07 18:39:54,480 - DEBUG - Taking top 8 variants by coverage in window 9:104260051-104260052
2012-10-07 18:39:55,186 - DEBUG - Taking top 8 variants by coverage in window 9:104267169-104267173
2012-10-07 18:39:56,066 - DEBUG - Taking top 8 variants by coverage in window 9:104274048-104274049
2012-10-07 18:39:56,551 - DEBUG - Taking top 8 variants by coverage in window 9:104279845-104279846
2012-10-07 18:39:58,088 - DEBUG - Taking top 8 variants by coverage in window 9:104293804-104293809
2012-10-07 18:39:58,504 - DEBUG - Taking top 8 variants by coverage in window 9:104296636-104296658
2012-10-07 18:39:58,779 - DEBUG - Taking top 8 variants by coverage in window 9:104297720-104297721
2012-10-07 18:39:59,400 - DEBUG - Taking top 8 variants by coverage in window 9:104304489-104304490
2012-10-07 18:40:00,315 - DEBUG - Taking top 8 variants by coverage in window 9:104308837-104308838
2012-10-07 18:40:00,474 - DEBUG - Taking top 8 variants by coverage in window 9:104309972-104309973
2012-10-07 18:40:02,004 - DEBUG - Taking top 8 variants by coverage in window 9:104325266-104325275
2012-10-07 18:40:03,117 - DEBUG - Taking top 8 variants by coverage in window 9:104333899-104333900
2012-10-07 18:40:03,581 - DEBUG - Taking top 8 variants by coverage in window 9:104340169-104340170
2012-10-07 18:40:05,557 - DEBUG - Taking top 8 variants by coverage in window 9:104362562-104362564
2012-10-07 18:40:05,774 - DEBUG - Taking top 8 variants by coverage in window 9:104363512-104363514
2012-10-07 18:40:06,387 - DEBUG - Taking top 8 variants by coverage in window 9:104369489-104369490
2012-10-07 18:40:07,062 - DEBUG - Taking top 8 variants by coverage in window 9:104376362-104376363
2012-10-07 18:40:08,542 - DEBUG - Taking top 8 variants by coverage in window 9:104388571-104388572
2012-10-07 18:40:09,532 - DEBUG - Taking top 8 variants by coverage in window 9:104401553-104401554
2012-10-07 18:40:09,751 - DEBUG - Taking top 8 variants by coverage in window 9:104403270-104403271
2012-10-07 18:40:10,091 - DEBUG - Taking top 8 variants by coverage in window 9:104407189-104407190
2012-10-07 18:40:10,167 - DEBUG - Taking top 8 variants by coverage in window 9:104407529-104407530
2012-10-07 18:40:10,508 - DEBUG - Taking top 8 variants by coverage in window 9:104414861-104414863
2012-10-07 18:40:10,786 - DEBUG - Taking top 8 variants by coverage in window 9:104419927-104419934
2012-10-07 18:40:10,811 - DEBUG - Taking top 8 variants by coverage in window 9:104419948-104419949
2012-10-07 18:40:10,879 - DEBUG - Taking top 8 variants by coverage in window 9:104420586-104420589
2012-10-07 18:40:10,914 - DEBUG - Taking top 8 variants by coverage in window 9:104420605-104420608
2012-10-07 18:40:11,222 - DEBUG - Taking top 8 variants by coverage in window 9:104425017-104425018
2012-10-07 18:40:11,386 - DEBUG - Taking top 8 variants by coverage in window 9:104426791-104426795
2012-10-07 18:40:11,437 - DEBUG - Taking top 8 variants by coverage in window 9:104427995-104427996
2012-10-07 18:40:12,117 - DEBUG - Taking top 8 variants by coverage in window 9:104434204-104434205
2012-10-07 18:40:12,325 - DEBUG - Taking top 8 variants by coverage in window 9:104437178-104437181
2012-10-07 18:40:12,370 - DEBUG - Taking top 8 variants by coverage in window 9:104437207-104437208
2012-10-07 18:40:12,553 - DEBUG - Taking top 8 variants by coverage in window 9:104442980-104442981
2012-10-07 18:40:12,741 - DEBUG - Taking top 8 variants by coverage in window 9:104446055-104446056
2012-10-07 18:40:13,917 - DEBUG - Taking top 8 variants by coverage in window 9:104462071-104462074
2012-10-07 18:40:14,029 - DEBUG - Taking top 8 variants by coverage in window 9:104463943-104463944
2012-10-07 18:40:15,032 - DEBUG - Taking top 8 variants by coverage in window 9:104477539-104477540
2012-10-07 18:40:15,094 - DEBUG - Taking top 8 variants by coverage in window 9:104478153-104478154
2012-10-07 18:40:15,678 - DEBUG - Taking top 8 variants by coverage in window 9:104483832-104483833
2012-10-07 18:40:16,501 - DEBUG - Taking top 8 variants by coverage in window 9:104496000-104496001
2012-10-07 18:40:16,926 - DEBUG - Taking top 8 variants by coverage in window 9:104502568-104502569
2012-10-07 18:40:17,207 - DEBUG - Taking top 8 variants by coverage in window 9:104506359-104506364
2012-10-07 18:40:17,248 - DEBUG - Taking top 8 variants by coverage in window 9:104506455-104506456
2012-10-07 18:40:17,392 - DEBUG - Taking top 8 variants by coverage in window 9:104506842-104506843
2012-10-07 18:40:17,865 - DEBUG - Taking top 8 variants by coverage in window 9:104511210-104511211
2012-10-07 18:40:17,985 - DEBUG - Taking top 8 variants by coverage in window 9:104511961-104511963
2012-10-07 18:40:18,769 - DEBUG - Taking top 8 variants by coverage in window 9:104516470-104516471
2012-10-07 18:40:19,139 - DEBUG - Taking top 8 variants by coverage in window 9:104520075-104520076
2012-10-07 18:40:20,006 - DEBUG - Taking top 8 variants by coverage in window 9:104526836-104526840
2012-10-07 18:40:20,305 - DEBUG - Taking top 8 variants by coverage in window 9:104531534-104531535
2012-10-07 18:40:20,661 - DEBUG - Taking top 8 variants by coverage in window 9:104535122-104535123
2012-10-07 18:40:20,686 - DEBUG - Taking top 8 variants by coverage in window 9:104535253-104535254
2012-10-07 18:40:21,379 - DEBUG - Taking top 8 variants by coverage in window 9:104551239-104551240
2012-10-07 18:40:22,107 - DEBUG - Taking top 8 variants by coverage in window 9:104566238-104566239
2012-10-07 18:40:22,256 - DEBUG - Taking top 8 variants by coverage in window 9:104568968-104568974
2012-10-07 18:40:22,365 - DEBUG - Taking top 8 variants by coverage in window 9:104571804-104571805
2012-10-07 18:40:22,667 - DEBUG - Taking top 8 variants by coverage in window 9:104579103-104579104
2012-10-07 18:40:23,335 - DEBUG - Taking top 8 variants by coverage in window 9:104591754-104591755
2012-10-07 18:40:23,501 - DEBUG - Taking top 8 variants by coverage in window 9:104595080-104595082
2012-10-07 18:40:24,967 - DEBUG - Taking top 8 variants by coverage in window 9:104614430-104614431
2012-10-07 18:40:25,005 - DEBUG - Taking top 8 variants by coverage in window 9:104614501-104614502
2012-10-07 18:40:25,605 - DEBUG - Taking top 8 variants by coverage in window 9:104624150-104624153
2012-10-07 18:40:26,201 - DEBUG - Taking top 8 variants by coverage in window 9:104629999-104630000
2012-10-07 18:40:26,603 - DEBUG - Taking top 8 variants by coverage in window 9:104635210-104635211
2012-10-07 18:40:26,794 - DEBUG - Taking top 8 variants by coverage in window 9:104637035-104637036
2012-10-07 18:40:26,856 - DEBUG - Taking top 8 variants by coverage in window 9:104637113-104637114
2012-10-07 18:40:27,694 - DEBUG - Taking top 8 variants by coverage in window 9:104649098-104649099
2012-10-07 18:40:27,900 - DEBUG - Taking top 8 variants by coverage in window 9:104653062-104653063
2012-10-07 18:40:27,966 - DEBUG - Taking top 8 variants by coverage in window 9:104654009-104654010
2012-10-07 18:40:28,104 - DEBUG - Taking top 8 variants by coverage in window 9:104655281-104655282
2012-10-07 18:40:28,131 - DEBUG - Taking top 8 variants by coverage in window 9:104655310-104655311
2012-10-07 18:40:28,732 - DEBUG - Taking top 8 variants by coverage in window 9:104662725-104662726
2012-10-07 18:40:29,293 - DEBUG - Taking top 8 variants by coverage in window 9:104673049-104673050
2012-10-07 18:40:29,380 - DEBUG - Taking top 8 variants by coverage in window 9:104674486-104674487
2012-10-07 18:40:30,052 - DEBUG - Taking top 8 variants by coverage in window 9:104685381-104685383
2012-10-07 18:40:30,172 - DEBUG - Taking top 8 variants by coverage in window 9:104686372-104686373
2012-10-07 18:40:30,308 - DEBUG - Taking top 8 variants by coverage in window 9:104687996-104687997
2012-10-07 18:40:31,072 - DEBUG - Taking top 8 variants by coverage in window 9:104697241-104697242
2012-10-07 18:40:31,090 - DEBUG - Taking top 8 variants by coverage in window 9:104697243-104697244
2012-10-07 18:40:31,458 - DEBUG - Taking top 8 variants by coverage in window 9:104706115-104706116
2012-10-07 18:40:32,219 - DEBUG - Taking top 8 variants by coverage in window 9:104717707-104717710
2012-10-07 18:40:32,301 - DEBUG - Taking top 8 variants by coverage in window 9:104717719-104717721
2012-10-07 18:40:32,421 - DEBUG - Taking top 8 variants by coverage in window 9:104717737-104717741
2012-10-07 18:40:32,668 - DEBUG - Taking top 8 variants by coverage in window 9:104723962-104723963
2012-10-07 18:40:33,128 - DEBUG - Taking top 8 variants by coverage in window 9:104733296-104733297
2012-10-07 18:40:33,360 - DEBUG - Taking top 8 variants by coverage in window 9:104737898-104737899
2012-10-07 18:40:33,376 - DEBUG - Taking top 8 variants by coverage in window 9:104737899-104737900
2012-10-07 18:40:33,959 - DEBUG - Taking top 8 variants by coverage in window 9:104747398-104747401
2012-10-07 18:40:34,030 - DEBUG - Taking top 8 variants by coverage in window 9:104748165-104748166
2012-10-07 18:40:35,295 - DEBUG - Taking top 8 variants by coverage in window 9:104771592-104771595
2012-10-07 18:40:35,657 - DEBUG - Taking top 8 variants by coverage in window 9:104777454-104777455
2012-10-07 18:40:35,667 - DEBUG - Taking top 8 variants by coverage in window 9:104777463-104777464
2012-10-07 18:40:35,813 - DEBUG - Taking top 8 variants by coverage in window 9:104780027-104780028
2012-10-07 18:40:35,820 - DEBUG - Taking top 8 variants by coverage in window 9:104780032-104780035
2012-10-07 18:40:36,561 - DEBUG - Taking top 8 variants by coverage in window 9:104790939-104790940
2012-10-07 18:40:36,802 - DEBUG - Taking top 8 variants by coverage in window 9:104796310-104796311
2012-10-07 18:40:37,540 - DEBUG - Taking top 8 variants by coverage in window 9:104807936-104807937
2012-10-07 18:40:38,224 - DEBUG - Taking top 8 variants by coverage in window 9:104829512-104829525
2012-10-07 18:40:38,942 - DEBUG - Taking top 8 variants by coverage in window 9:104839447-104839448
2012-10-07 18:40:39,123 - DEBUG - Taking top 8 variants by coverage in window 9:104842022-104842023
2012-10-07 18:40:39,136 - DEBUG - Taking top 8 variants by coverage in window 9:104842030-104842031
2012-10-07 18:40:39,773 - DEBUG - Taking top 8 variants by coverage in window 9:104853698-104853699
2012-10-07 18:40:39,783 - DEBUG - Taking top 8 variants by coverage in window 9:104853726-104853727
2012-10-07 18:40:39,845 - DEBUG - Taking top 8 variants by coverage in window 9:104854203-104854204
2012-10-07 18:40:40,006 - DEBUG - Taking top 8 variants by coverage in window 9:104856207-104856208
2012-10-07 18:40:41,100 - DEBUG - Taking top 8 variants by coverage in window 9:104879456-104879459
2012-10-07 18:40:41,729 - DEBUG - Taking top 8 variants by coverage in window 9:104879574-104879576
2012-10-07 18:40:42,594 - DEBUG - Taking top 8 variants by coverage in window 9:104888430-104888440
2012-10-07 18:40:42,728 - DEBUG - Taking top 8 variants by coverage in window 9:104888446-104888449
2012-10-07 18:40:42,931 - DEBUG - Taking top 8 variants by coverage in window 9:104888503-104888507
2012-10-07 18:40:43,062 - DEBUG - Taking top 8 variants by coverage in window 9:104888526-104888534
2012-10-07 18:40:43,285 - DEBUG - Taking top 8 variants by coverage in window 9:104888543-104888550
2012-10-07 18:40:43,566 - DEBUG - Taking top 8 variants by coverage in window 9:104888653-104888654
2012-10-07 18:40:45,685 - DEBUG - Taking top 8 variants by coverage in window 9:104911968-104911969
2012-10-07 18:40:45,860 - DEBUG - Taking top 8 variants by coverage in window 9:104914820-104914821
2012-10-07 18:40:46,030 - DEBUG - Taking top 8 variants by coverage in window 9:104915444-104915450
2012-10-07 18:40:46,466 - DEBUG - Taking top 8 variants by coverage in window 9:104920426-104920427
2012-10-07 18:40:46,540 - DEBUG - Taking top 8 variants by coverage in window 9:104922275-104922276
2012-10-07 18:40:46,562 - DEBUG - Taking top 8 variants by coverage in window 9:104922289-104922291
2012-10-07 18:40:49,198 - DEBUG - Taking top 8 variants by coverage in window 9:104967504-104967505
2012-10-07 18:40:49,465 - DEBUG - Taking top 8 variants by coverage in window 9:104976240-104976241
2012-10-07 18:40:50,472 - DEBUG - Taking top 8 variants by coverage in window 9:104987721-104987722
2012-10-07 18:40:50,534 - DEBUG - Taking top 8 variants by coverage in window 9:104993925-104993926
2012-10-07 18:40:50,658 - DEBUG - Taking top 8 variants by coverage in window 9:104998435-104998436
2012-10-07 18:40:51,612 - INFO - Processing region 9:105000000-106000000
2012-10-07 18:40:51,875 - DEBUG - Read 98158 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 18:40:52,161 - DEBUG - Read 108149 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 18:40:52,470 - DEBUG - Read 124998 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 18:40:52,794 - DEBUG - Read 126078 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 18:40:53,104 - DEBUG - Read 118779 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 18:40:53,382 - DEBUG - Read 113742 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 18:40:53,673 - DEBUG - Read 119767 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 18:40:53,957 - DEBUG - Read 109377 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 18:40:54,222 - DEBUG - Read 103664 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 18:40:54,525 - DEBUG - Read 103485 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 18:40:54,815 - DEBUG - Read 114838 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 18:40:55,086 - DEBUG - Read 105978 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 18:40:55,368 - DEBUG - Read 107060 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 18:40:55,642 - DEBUG - Read 116893 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 18:40:55,943 - DEBUG - Read 125711 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 18:40:56,199 - DEBUG - Read 97123 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 18:40:56,509 - DEBUG - Read 121435 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 18:40:56,800 - DEBUG - Read 114904 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 18:40:57,052 - DEBUG - Read 101705 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 18:40:57,332 - DEBUG - Read 99598 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 18:40:57,454 - DEBUG - Detected 24864 variants in 98158 reads
2012-10-07 18:40:57,666 - DEBUG - Detected 37216 variants in 108149 reads
2012-10-07 18:40:57,955 - DEBUG - Detected 46509 variants in 124998 reads
2012-10-07 18:40:58,280 - DEBUG - Detected 54282 variants in 126078 reads
2012-10-07 18:40:58,674 - DEBUG - Detected 61374 variants in 118779 reads
2012-10-07 18:40:59,039 - DEBUG - Detected 67791 variants in 113742 reads
2012-10-07 18:40:59,444 - DEBUG - Detected 82333 variants in 119767 reads
2012-10-07 18:40:59,896 - DEBUG - Detected 88074 variants in 109377 reads
2012-10-07 18:41:00,392 - DEBUG - Detected 93990 variants in 103664 reads
2012-10-07 18:41:00,966 - DEBUG - Detected 100425 variants in 103485 reads
2012-10-07 18:41:01,536 - DEBUG - Detected 105458 variants in 114838 reads
2012-10-07 18:41:02,126 - DEBUG - Detected 109707 variants in 105978 reads
2012-10-07 18:41:02,740 - DEBUG - Detected 113837 variants in 107060 reads
2012-10-07 18:41:03,389 - DEBUG - Detected 118300 variants in 116893 reads
2012-10-07 18:41:04,201 - DEBUG - Detected 125815 variants in 125711 reads
2012-10-07 18:41:04,963 - DEBUG - Detected 129730 variants in 97123 reads
2012-10-07 18:41:05,776 - DEBUG - Detected 133650 variants in 121435 reads
2012-10-07 18:41:06,601 - DEBUG - Detected 138060 variants in 114904 reads
2012-10-07 18:41:07,439 - DEBUG - Detected 142558 variants in 101705 reads
2012-10-07 18:41:08,360 - DEBUG - Detected 147152 variants in 99598 reads
2012-10-07 18:41:09,656 - DEBUG - Taking top 8 variants by coverage in window 9:105001197-105001209
2012-10-07 18:41:09,855 - DEBUG - Taking top 8 variants by coverage in window 9:105002980-105002981
2012-10-07 18:41:10,355 - DEBUG - Taking top 8 variants by coverage in window 9:105007246-105007247
2012-10-07 18:41:10,735 - DEBUG - Taking top 8 variants by coverage in window 9:105010082-105010083
2012-10-07 18:41:10,856 - DEBUG - Taking top 8 variants by coverage in window 9:105010703-105010704
2012-10-07 18:41:11,385 - DEBUG - Taking top 8 variants by coverage in window 9:105017937-105017938
2012-10-07 18:41:11,503 - DEBUG - Taking top 8 variants by coverage in window 9:105018388-105018389
2012-10-07 18:41:11,797 - DEBUG - Taking top 8 variants by coverage in window 9:105021642-105021643
2012-10-07 18:41:12,663 - DEBUG - Taking top 8 variants by coverage in window 9:105030432-105030435
2012-10-07 18:41:13,250 - DEBUG - Taking top 8 variants by coverage in window 9:105035434-105035435
2012-10-07 18:41:13,279 - DEBUG - Taking top 8 variants by coverage in window 9:105035497-105035498
2012-10-07 18:41:13,687 - DEBUG - Taking top 8 variants by coverage in window 9:105040178-105040186
2012-10-07 18:41:14,243 - DEBUG - Taking top 8 variants by coverage in window 9:105042960-105042964
2012-10-07 18:41:15,916 - DEBUG - Taking top 8 variants by coverage in window 9:105065101-105065102
2012-10-07 18:41:15,948 - DEBUG - Taking top 8 variants by coverage in window 9:105065125-105065126
2012-10-07 18:41:16,292 - DEBUG - Taking top 8 variants by coverage in window 9:105067764-105067765
2012-10-07 18:41:16,583 - DEBUG - Taking top 8 variants by coverage in window 9:105070540-105070545
2012-10-07 18:41:16,987 - DEBUG - Taking top 8 variants by coverage in window 9:105073944-105073945
2012-10-07 18:41:17,352 - DEBUG - Taking top 8 variants by coverage in window 9:105075093-105075094
2012-10-07 18:41:17,543 - DEBUG - Taking top 8 variants by coverage in window 9:105075712-105075718
2012-10-07 18:41:18,755 - DEBUG - Taking top 8 variants by coverage in window 9:105082381-105082382
2012-10-07 18:41:19,534 - DEBUG - Taking top 8 variants by coverage in window 9:105093119-105093120
2012-10-07 18:41:19,764 - DEBUG - Taking top 8 variants by coverage in window 9:105094814-105094815
2012-10-07 18:41:19,935 - DEBUG - Taking top 8 variants by coverage in window 9:105095964-105095965
2012-10-07 18:41:19,974 - DEBUG - Taking top 8 variants by coverage in window 9:105096012-105096013
2012-10-07 18:41:20,091 - DEBUG - Taking top 8 variants by coverage in window 9:105096783-105096800
2012-10-07 18:41:20,384 - DEBUG - Taking top 8 variants by coverage in window 9:105100773-105100774
2012-10-07 18:41:20,418 - DEBUG - Taking top 8 variants by coverage in window 9:105100787-105100788
2012-10-07 18:41:21,046 - DEBUG - Taking top 8 variants by coverage in window 9:105105848-105105856
2012-10-07 18:41:21,281 - DEBUG - Taking top 8 variants by coverage in window 9:105106078-105106085
2012-10-07 18:41:21,511 - DEBUG - Taking top 8 variants by coverage in window 9:105106103-105106109
2012-10-07 18:41:21,570 - DEBUG - Taking top 8 variants by coverage in window 9:105106144-105106150
2012-10-07 18:41:22,014 - DEBUG - Taking top 8 variants by coverage in window 9:105109948-105109960
2012-10-07 18:41:22,585 - DEBUG - Taking top 8 variants by coverage in window 9:105121277-105121278
2012-10-07 18:41:22,831 - DEBUG - Taking top 8 variants by coverage in window 9:105127458-105127461
2012-10-07 18:41:23,041 - DEBUG - Taking top 8 variants by coverage in window 9:105127476-105127477
2012-10-07 18:41:23,926 - DEBUG - Taking top 8 variants by coverage in window 9:105137348-105137349
2012-10-07 18:41:23,948 - DEBUG - Taking top 8 variants by coverage in window 9:105137365-105137366
2012-10-07 18:41:24,557 - DEBUG - Taking top 8 variants by coverage in window 9:105145207-105145208
2012-10-07 18:41:25,485 - DEBUG - Taking top 8 variants by coverage in window 9:105152663-105152664
2012-10-07 18:41:25,575 - DEBUG - Taking top 8 variants by coverage in window 9:105153167-105153168
2012-10-07 18:41:25,820 - DEBUG - Taking top 8 variants by coverage in window 9:105155488-105155489
2012-10-07 18:41:26,134 - DEBUG - Taking top 8 variants by coverage in window 9:105158979-105158981
2012-10-07 18:41:26,522 - DEBUG - Taking top 8 variants by coverage in window 9:105160995-105160996
2012-10-07 18:41:26,545 - DEBUG - Taking top 8 variants by coverage in window 9:105161010-105161011
2012-10-07 18:41:26,619 - DEBUG - Taking top 8 variants by coverage in window 9:105161881-105161882
2012-10-07 18:41:26,967 - DEBUG - Taking top 8 variants by coverage in window 9:105168189-105168190
2012-10-07 18:41:27,023 - DEBUG - Taking top 8 variants by coverage in window 9:105168969-105168970
2012-10-07 18:41:27,319 - DEBUG - Taking top 8 variants by coverage in window 9:105172557-105172559
2012-10-07 18:41:28,226 - DEBUG - Taking top 8 variants by coverage in window 9:105183164-105183165
2012-10-07 18:41:28,249 - DEBUG - Taking top 8 variants by coverage in window 9:105183183-105183184
2012-10-07 18:41:28,419 - DEBUG - Taking top 8 variants by coverage in window 9:105185112-105185114
2012-10-07 18:41:28,886 - DEBUG - Taking top 8 variants by coverage in window 9:105190888-105190889
2012-10-07 18:41:29,480 - DEBUG - Taking top 8 variants by coverage in window 9:105198758-105198759
2012-10-07 18:41:30,212 - DEBUG - Taking top 8 variants by coverage in window 9:105204111-105204112
2012-10-07 18:41:30,927 - DEBUG - Taking top 8 variants by coverage in window 9:105210242-105210243
2012-10-07 18:41:31,148 - DEBUG - Taking top 8 variants by coverage in window 9:105212662-105212686
2012-10-07 18:41:31,508 - DEBUG - Taking top 8 variants by coverage in window 9:105217091-105217092
2012-10-07 18:41:31,844 - DEBUG - Taking top 8 variants by coverage in window 9:105221279-105221280
2012-10-07 18:41:31,866 - DEBUG - Taking top 8 variants by coverage in window 9:105221288-105221289
2012-10-07 18:41:32,125 - DEBUG - Taking top 8 variants by coverage in window 9:105224401-105224402
2012-10-07 18:41:32,217 - DEBUG - Taking top 8 variants by coverage in window 9:105224885-105224886
2012-10-07 18:41:32,259 - DEBUG - Taking top 8 variants by coverage in window 9:105224900-105224903
2012-10-07 18:41:32,960 - DEBUG - Taking top 8 variants by coverage in window 9:105234411-105234415
2012-10-07 18:41:32,988 - DEBUG - Taking top 8 variants by coverage in window 9:105234447-105234461
2012-10-07 18:41:33,192 - DEBUG - Taking top 8 variants by coverage in window 9:105243056-105243057
2012-10-07 18:41:34,100 - DEBUG - Taking top 8 variants by coverage in window 9:105250996-105251002
2012-10-07 18:41:34,331 - DEBUG - Taking top 8 variants by coverage in window 9:105252846-105252847
2012-10-07 18:41:34,405 - DEBUG - Taking top 8 variants by coverage in window 9:105252879-105252880
2012-10-07 18:41:34,419 - DEBUG - Taking top 8 variants by coverage in window 9:105252885-105252886
2012-10-07 18:41:34,880 - DEBUG - Taking top 8 variants by coverage in window 9:105255616-105255617
2012-10-07 18:41:35,044 - DEBUG - Taking top 8 variants by coverage in window 9:105256041-105256042
2012-10-07 18:41:35,073 - DEBUG - Taking top 8 variants by coverage in window 9:105256046-105256054
2012-10-07 18:41:35,779 - DEBUG - Taking top 8 variants by coverage in window 9:105259794-105259796
2012-10-07 18:41:35,829 - DEBUG - Taking top 8 variants by coverage in window 9:105259876-105259878
2012-10-07 18:41:36,074 - DEBUG - Taking top 8 variants by coverage in window 9:105262653-105262655
2012-10-07 18:41:36,446 - DEBUG - Taking top 8 variants by coverage in window 9:105266517-105266518
2012-10-07 18:41:37,318 - DEBUG - Taking top 8 variants by coverage in window 9:105277676-105277677
2012-10-07 18:41:37,678 - DEBUG - Taking top 8 variants by coverage in window 9:105282904-105282905
2012-10-07 18:41:37,696 - DEBUG - Taking top 8 variants by coverage in window 9:105282929-105282930
2012-10-07 18:41:37,726 - DEBUG - Taking top 8 variants by coverage in window 9:105282935-105282936
2012-10-07 18:41:37,830 - DEBUG - Taking top 8 variants by coverage in window 9:105283953-105283955
2012-10-07 18:41:38,210 - DEBUG - Taking top 8 variants by coverage in window 9:105288322-105288323
2012-10-07 18:41:38,318 - DEBUG - Taking top 8 variants by coverage in window 9:105288354-105288355
2012-10-07 18:41:38,395 - DEBUG - Taking top 8 variants by coverage in window 9:105288370-105288371
2012-10-07 18:41:38,463 - DEBUG - Taking top 8 variants by coverage in window 9:105288413-105288415
2012-10-07 18:41:39,090 - DEBUG - Taking top 8 variants by coverage in window 9:105293417-105293418
2012-10-07 18:41:39,924 - DEBUG - Taking top 8 variants by coverage in window 9:105310857-105310859
2012-10-07 18:41:40,113 - DEBUG - Taking top 8 variants by coverage in window 9:105311642-105311644
2012-10-07 18:41:40,193 - DEBUG - Taking top 8 variants by coverage in window 9:105311713-105311717
2012-10-07 18:41:40,559 - DEBUG - Taking top 8 variants by coverage in window 9:105317723-105317724
2012-10-07 18:41:41,943 - DEBUG - Taking top 8 variants by coverage in window 9:105348060-105348061
2012-10-07 18:41:42,127 - DEBUG - Taking top 8 variants by coverage in window 9:105351542-105351551
2012-10-07 18:41:42,314 - DEBUG - Taking top 8 variants by coverage in window 9:105354642-105354646
2012-10-07 18:41:42,403 - DEBUG - Taking top 8 variants by coverage in window 9:105354657-105354659
2012-10-07 18:41:42,765 - DEBUG - Taking top 8 variants by coverage in window 9:105361339-105361340
2012-10-07 18:41:42,799 - DEBUG - Taking top 8 variants by coverage in window 9:105361368-105361369
2012-10-07 18:41:43,004 - DEBUG - Taking top 8 variants by coverage in window 9:105363186-105363187
2012-10-07 18:41:43,300 - DEBUG - Taking top 8 variants by coverage in window 9:105372179-105372180
2012-10-07 18:41:43,316 - DEBUG - Taking top 8 variants by coverage in window 9:105372197-105372198
2012-10-07 18:41:43,500 - DEBUG - Taking top 8 variants by coverage in window 9:105375208-105375209
2012-10-07 18:41:43,831 - DEBUG - Taking top 8 variants by coverage in window 9:105386272-105386273
2012-10-07 18:41:44,474 - DEBUG - Taking top 8 variants by coverage in window 9:105402894-105402895
2012-10-07 18:41:44,582 - DEBUG - Taking top 8 variants by coverage in window 9:105404327-105404328
2012-10-07 18:41:45,216 - DEBUG - Taking top 8 variants by coverage in window 9:105415891-105415892
2012-10-07 18:41:45,241 - DEBUG - Taking top 8 variants by coverage in window 9:105415908-105415910
2012-10-07 18:41:45,268 - DEBUG - Taking top 8 variants by coverage in window 9:105416129-105416132
2012-10-07 18:41:45,286 - DEBUG - Taking top 8 variants by coverage in window 9:105416151-105416152
2012-10-07 18:41:45,757 - DEBUG - Taking top 8 variants by coverage in window 9:105424988-105424989
2012-10-07 18:41:45,920 - DEBUG - Taking top 8 variants by coverage in window 9:105429001-105429002
2012-10-07 18:41:46,492 - DEBUG - Taking top 8 variants by coverage in window 9:105439897-105439898
2012-10-07 18:41:46,561 - DEBUG - Taking top 8 variants by coverage in window 9:105440496-105440497
2012-10-07 18:41:46,579 - DEBUG - Taking top 8 variants by coverage in window 9:105440499-105440500
2012-10-07 18:41:46,667 - DEBUG - Taking top 8 variants by coverage in window 9:105441650-105441651
2012-10-07 18:41:46,770 - DEBUG - Taking top 8 variants by coverage in window 9:105441789-105441790
2012-10-07 18:41:47,045 - DEBUG - Taking top 8 variants by coverage in window 9:105449601-105449602
2012-10-07 18:41:47,310 - DEBUG - Taking top 8 variants by coverage in window 9:105452609-105452610
2012-10-07 18:41:47,644 - DEBUG - Taking top 8 variants by coverage in window 9:105453321-105453322
2012-10-07 18:41:48,017 - DEBUG - Taking top 8 variants by coverage in window 9:105458167-105458168
2012-10-07 18:41:48,091 - DEBUG - Taking top 8 variants by coverage in window 9:105458607-105458608
2012-10-07 18:41:48,369 - DEBUG - Taking top 8 variants by coverage in window 9:105464282-105464283
2012-10-07 18:41:48,459 - DEBUG - Taking top 8 variants by coverage in window 9:105466995-105466996
2012-10-07 18:41:48,573 - DEBUG - Taking top 8 variants by coverage in window 9:105468985-105468986
2012-10-07 18:41:48,585 - DEBUG - Taking top 8 variants by coverage in window 9:105468991-105469007
2012-10-07 18:41:49,600 - DEBUG - Taking top 8 variants by coverage in window 9:105478397-105478398
2012-10-07 18:41:49,636 - DEBUG - Taking top 8 variants by coverage in window 9:105478414-105478415
2012-10-07 18:41:50,004 - DEBUG - Taking top 8 variants by coverage in window 9:105480533-105480534
2012-10-07 18:41:50,164 - DEBUG - Taking top 8 variants by coverage in window 9:105480545-105480546
2012-10-07 18:41:51,060 - DEBUG - Taking top 8 variants by coverage in window 9:105492988-105492989
2012-10-07 18:41:51,226 - DEBUG - Taking top 8 variants by coverage in window 9:105495057-105495058
2012-10-07 18:41:51,355 - DEBUG - Taking top 8 variants by coverage in window 9:105495684-105495685
2012-10-07 18:41:51,380 - DEBUG - Taking top 8 variants by coverage in window 9:105495685-105495686
2012-10-07 18:41:51,399 - DEBUG - Taking top 8 variants by coverage in window 9:105495687-105495689
2012-10-07 18:41:52,164 - DEBUG - Taking top 8 variants by coverage in window 9:105505725-105505726
2012-10-07 18:41:52,439 - DEBUG - Taking top 8 variants by coverage in window 9:105509598-105509599
2012-10-07 18:41:52,775 - DEBUG - Taking top 8 variants by coverage in window 9:105513436-105513437
2012-10-07 18:41:52,817 - DEBUG - Taking top 8 variants by coverage in window 9:105513438-105513440
2012-10-07 18:41:52,969 - DEBUG - Taking top 8 variants by coverage in window 9:105513519-105513520
2012-10-07 18:41:53,630 - DEBUG - Taking top 8 variants by coverage in window 9:105522430-105522431
2012-10-07 18:41:53,650 - DEBUG - Taking top 8 variants by coverage in window 9:105522440-105522441
2012-10-07 18:41:54,107 - DEBUG - Taking top 8 variants by coverage in window 9:105534117-105534119
2012-10-07 18:41:55,147 - DEBUG - Taking top 8 variants by coverage in window 9:105543289-105543291
2012-10-07 18:41:55,759 - DEBUG - Taking top 8 variants by coverage in window 9:105552463-105552464
2012-10-07 18:41:56,129 - DEBUG - Taking top 8 variants by coverage in window 9:105558954-105558955
2012-10-07 18:41:56,294 - DEBUG - Taking top 8 variants by coverage in window 9:105559480-105559481
2012-10-07 18:41:56,441 - DEBUG - Taking top 8 variants by coverage in window 9:105559500-105559501
2012-10-07 18:41:56,633 - DEBUG - Taking top 8 variants by coverage in window 9:105559531-105559532
2012-10-07 18:41:56,745 - DEBUG - Taking top 8 variants by coverage in window 9:105559538-105559539
2012-10-07 18:41:56,773 - DEBUG - Taking top 8 variants by coverage in window 9:105559539-105559540
2012-10-07 18:41:56,863 - DEBUG - Taking top 8 variants by coverage in window 9:105559542-105559543
2012-10-07 18:41:57,875 - DEBUG - Taking top 8 variants by coverage in window 9:105567815-105567816
2012-10-07 18:41:58,567 - DEBUG - Taking top 8 variants by coverage in window 9:105575916-105575917
2012-10-07 18:41:58,778 - DEBUG - Taking top 8 variants by coverage in window 9:105577751-105577754
2012-10-07 18:42:00,186 - DEBUG - Taking top 8 variants by coverage in window 9:105579856-105579857
2012-10-07 18:42:01,832 - DEBUG - Taking top 8 variants by coverage in window 9:105600613-105600614
2012-10-07 18:42:02,275 - DEBUG - Taking top 8 variants by coverage in window 9:105605673-105605674
2012-10-07 18:42:02,294 - DEBUG - Taking top 8 variants by coverage in window 9:105605695-105605696
2012-10-07 18:42:02,615 - DEBUG - Taking top 8 variants by coverage in window 9:105609391-105609392
2012-10-07 18:42:03,113 - DEBUG - Taking top 8 variants by coverage in window 9:105617270-105617271
2012-10-07 18:42:03,696 - DEBUG - Taking top 8 variants by coverage in window 9:105625037-105625038
2012-10-07 18:42:03,731 - DEBUG - Taking top 8 variants by coverage in window 9:105625129-105625130
2012-10-07 18:42:03,744 - DEBUG - Taking top 8 variants by coverage in window 9:105625155-105625156
2012-10-07 18:42:03,930 - DEBUG - Taking top 8 variants by coverage in window 9:105627252-105627253
2012-10-07 18:42:04,588 - DEBUG - Taking top 8 variants by coverage in window 9:105632538-105632539
2012-10-07 18:42:04,677 - DEBUG - Taking top 8 variants by coverage in window 9:105632558-105632559
2012-10-07 18:42:06,182 - DEBUG - Taking top 8 variants by coverage in window 9:105646989-105646990
2012-10-07 18:42:06,654 - DEBUG - Taking top 8 variants by coverage in window 9:105650689-105650696
2012-10-07 18:42:07,046 - DEBUG - Taking top 8 variants by coverage in window 9:105652566-105652567
2012-10-07 18:42:07,144 - DEBUG - Taking top 8 variants by coverage in window 9:105653301-105653302
2012-10-07 18:42:08,193 - DEBUG - Taking top 8 variants by coverage in window 9:105666491-105666499
2012-10-07 18:42:08,572 - DEBUG - Taking top 8 variants by coverage in window 9:105671989-105671992
2012-10-07 18:42:08,962 - DEBUG - Taking top 8 variants by coverage in window 9:105675718-105675719
2012-10-07 18:42:09,075 - DEBUG - Taking top 8 variants by coverage in window 9:105677821-105677822
2012-10-07 18:42:09,142 - DEBUG - Taking top 8 variants by coverage in window 9:105677934-105677937
2012-10-07 18:42:09,725 - DEBUG - Taking top 8 variants by coverage in window 9:105685756-105685757
2012-10-07 18:42:10,056 - DEBUG - Taking top 8 variants by coverage in window 9:105689530-105689531
2012-10-07 18:42:11,018 - DEBUG - Taking top 8 variants by coverage in window 9:105696624-105696627
2012-10-07 18:42:11,415 - DEBUG - Taking top 8 variants by coverage in window 9:105699977-105699978
2012-10-07 18:42:11,837 - DEBUG - Taking top 8 variants by coverage in window 9:105703190-105703191
2012-10-07 18:42:12,079 - DEBUG - Taking top 8 variants by coverage in window 9:105705312-105705313
2012-10-07 18:42:12,090 - DEBUG - Taking top 8 variants by coverage in window 9:105705315-105705319
2012-10-07 18:42:12,392 - DEBUG - Taking top 8 variants by coverage in window 9:105706655-105706656
2012-10-07 18:42:12,802 - DEBUG - Taking top 8 variants by coverage in window 9:105709692-105709694
2012-10-07 18:42:12,923 - DEBUG - Taking top 8 variants by coverage in window 9:105710052-105710053
2012-10-07 18:42:13,232 - DEBUG - Taking top 8 variants by coverage in window 9:105714644-105714645
2012-10-07 18:42:13,252 - DEBUG - Taking top 8 variants by coverage in window 9:105714652-105714653
2012-10-07 18:42:13,281 - DEBUG - Taking top 8 variants by coverage in window 9:105714666-105714668
2012-10-07 18:42:13,349 - DEBUG - Taking top 8 variants by coverage in window 9:105715570-105715571
2012-10-07 18:42:13,900 - DEBUG - Taking top 8 variants by coverage in window 9:105724630-105724633
2012-10-07 18:42:13,973 - DEBUG - Taking top 8 variants by coverage in window 9:105725293-105725295
2012-10-07 18:42:13,998 - DEBUG - Taking top 8 variants by coverage in window 9:105725470-105725471
2012-10-07 18:42:14,276 - DEBUG - Taking top 8 variants by coverage in window 9:105727283-105727285
2012-10-07 18:42:14,369 - DEBUG - Taking top 8 variants by coverage in window 9:105727316-105727320
2012-10-07 18:42:15,210 - DEBUG - Taking top 8 variants by coverage in window 9:105734085-105734086
2012-10-07 18:42:15,243 - DEBUG - Taking top 8 variants by coverage in window 9:105734547-105734548
2012-10-07 18:42:15,526 - DEBUG - Taking top 8 variants by coverage in window 9:105736784-105736785
2012-10-07 18:42:15,900 - DEBUG - Taking top 8 variants by coverage in window 9:105742075-105742077
2012-10-07 18:42:15,958 - DEBUG - Taking top 8 variants by coverage in window 9:105742439-105742440
2012-10-07 18:42:15,978 - DEBUG - Taking top 8 variants by coverage in window 9:105742475-105742476
2012-10-07 18:42:16,192 - DEBUG - Taking top 8 variants by coverage in window 9:105744090-105744091
2012-10-07 18:42:16,211 - DEBUG - Taking top 8 variants by coverage in window 9:105744104-105744105
2012-10-07 18:42:17,037 - DEBUG - Taking top 8 variants by coverage in window 9:105752237-105752239
2012-10-07 18:42:17,458 - DEBUG - Taking top 8 variants by coverage in window 9:105756208-105756212
2012-10-07 18:42:17,500 - DEBUG - Taking top 8 variants by coverage in window 9:105756220-105756222
2012-10-07 18:42:17,605 - DEBUG - Taking top 8 variants by coverage in window 9:105756230-105756231
2012-10-07 18:42:17,630 - DEBUG - Taking top 8 variants by coverage in window 9:105756233-105756234
2012-10-07 18:42:18,322 - DEBUG - Taking top 8 variants by coverage in window 9:105760917-105760926
2012-10-07 18:42:18,629 - DEBUG - Taking top 8 variants by coverage in window 9:105761536-105761537
2012-10-07 18:42:18,754 - DEBUG - Taking top 8 variants by coverage in window 9:105763013-105763014
2012-10-07 18:42:19,107 - DEBUG - Taking top 8 variants by coverage in window 9:105769800-105769801
2012-10-07 18:42:19,136 - DEBUG - Taking top 8 variants by coverage in window 9:105770384-105770385
2012-10-07 18:42:19,319 - DEBUG - Taking top 8 variants by coverage in window 9:105773034-105773035
2012-10-07 18:42:20,206 - DEBUG - Taking top 8 variants by coverage in window 9:105785180-105785182
2012-10-07 18:42:20,597 - DEBUG - Taking top 8 variants by coverage in window 9:105788593-105788595
2012-10-07 18:42:20,847 - DEBUG - Taking top 8 variants by coverage in window 9:105789501-105789502
2012-10-07 18:42:20,877 - DEBUG - Taking top 8 variants by coverage in window 9:105789532-105789533
2012-10-07 18:42:21,102 - DEBUG - Taking top 8 variants by coverage in window 9:105791830-105791831
2012-10-07 18:42:21,421 - DEBUG - Taking top 8 variants by coverage in window 9:105795612-105795614
2012-10-07 18:42:21,540 - DEBUG - Taking top 8 variants by coverage in window 9:105795941-105795942
2012-10-07 18:42:21,557 - DEBUG - Taking top 8 variants by coverage in window 9:105795942-105795943
2012-10-07 18:42:21,751 - DEBUG - Taking top 8 variants by coverage in window 9:105797378-105797379
2012-10-07 18:42:21,974 - DEBUG - Taking top 8 variants by coverage in window 9:105801621-105801622
2012-10-07 18:42:22,010 - DEBUG - Taking top 8 variants by coverage in window 9:105801894-105801895
2012-10-07 18:42:22,200 - DEBUG - Taking top 8 variants by coverage in window 9:105803780-105803781
2012-10-07 18:42:22,214 - DEBUG - Taking top 8 variants by coverage in window 9:105803792-105803793
2012-10-07 18:42:22,721 - DEBUG - Taking top 8 variants by coverage in window 9:105811206-105811207
2012-10-07 18:42:23,084 - DEBUG - Taking top 8 variants by coverage in window 9:105816174-105816175
2012-10-07 18:42:23,251 - DEBUG - Taking top 8 variants by coverage in window 9:105818799-105818801
2012-10-07 18:42:23,543 - DEBUG - Taking top 8 variants by coverage in window 9:105820410-105820411
2012-10-07 18:42:24,104 - DEBUG - Taking top 8 variants by coverage in window 9:105825213-105825214
2012-10-07 18:42:24,142 - DEBUG - Taking top 8 variants by coverage in window 9:105825399-105825403
2012-10-07 18:42:25,450 - DEBUG - Taking top 8 variants by coverage in window 9:105846300-105846301
2012-10-07 18:42:25,520 - DEBUG - Taking top 8 variants by coverage in window 9:105846456-105846457
2012-10-07 18:42:26,267 - DEBUG - Taking top 8 variants by coverage in window 9:105854740-105854741
2012-10-07 18:42:26,313 - DEBUG - Taking top 8 variants by coverage in window 9:105854907-105854908
2012-10-07 18:42:26,892 - DEBUG - Taking top 8 variants by coverage in window 9:105860747-105860748
2012-10-07 18:42:26,909 - DEBUG - Taking top 8 variants by coverage in window 9:105861301-105861306
2012-10-07 18:42:27,024 - DEBUG - Taking top 8 variants by coverage in window 9:105861777-105861778
2012-10-07 18:42:27,174 - DEBUG - Taking top 8 variants by coverage in window 9:105863591-105863594
2012-10-07 18:42:27,525 - DEBUG - Taking top 8 variants by coverage in window 9:105867998-105867999
2012-10-07 18:42:27,541 - DEBUG - Taking top 8 variants by coverage in window 9:105868016-105868017
2012-10-07 18:42:27,741 - DEBUG - Taking top 8 variants by coverage in window 9:105870101-105870102
2012-10-07 18:42:28,251 - DEBUG - Taking top 8 variants by coverage in window 9:105874675-105874676
2012-10-07 18:42:28,346 - DEBUG - Taking top 8 variants by coverage in window 9:105875216-105875217
2012-10-07 18:42:28,795 - DEBUG - Taking top 8 variants by coverage in window 9:105881173-105881174
2012-10-07 18:42:29,290 - DEBUG - Taking top 8 variants by coverage in window 9:105884884-105884889
2012-10-07 18:42:29,843 - DEBUG - Taking top 8 variants by coverage in window 9:105888614-105888621
2012-10-07 18:42:32,765 - DEBUG - Taking top 8 variants by coverage in window 9:105925017-105925018
2012-10-07 18:42:33,062 - DEBUG - Taking top 8 variants by coverage in window 9:105927443-105927444
2012-10-07 18:42:33,619 - DEBUG - Taking top 8 variants by coverage in window 9:105932801-105932802
2012-10-07 18:42:33,646 - DEBUG - Taking top 8 variants by coverage in window 9:105932803-105932804
2012-10-07 18:42:33,723 - DEBUG - Taking top 8 variants by coverage in window 9:105932817-105932818
2012-10-07 18:42:33,836 - DEBUG - Taking top 8 variants by coverage in window 9:105932845-105932848
2012-10-07 18:42:33,965 - DEBUG - Taking top 8 variants by coverage in window 9:105932860-105932864
2012-10-07 18:42:34,214 - DEBUG - Taking top 8 variants by coverage in window 9:105932892-105932893
2012-10-07 18:42:34,250 - DEBUG - Taking top 8 variants by coverage in window 9:105932894-105932895
2012-10-07 18:42:34,364 - DEBUG - Taking top 8 variants by coverage in window 9:105932909-105932910
2012-10-07 18:42:34,901 - DEBUG - Taking top 8 variants by coverage in window 9:105936879-105936880
2012-10-07 18:42:35,082 - DEBUG - Taking top 8 variants by coverage in window 9:105938335-105938336
2012-10-07 18:42:35,965 - DEBUG - Taking top 8 variants by coverage in window 9:105949960-105949962
2012-10-07 18:42:36,209 - DEBUG - Taking top 8 variants by coverage in window 9:105952366-105952367
2012-10-07 18:42:36,325 - DEBUG - Taking top 8 variants by coverage in window 9:105953203-105953204
2012-10-07 18:42:36,578 - DEBUG - Taking top 8 variants by coverage in window 9:105955375-105955376
2012-10-07 18:42:36,681 - DEBUG - Taking top 8 variants by coverage in window 9:105956261-105956262
2012-10-07 18:42:38,018 - DEBUG - Taking top 8 variants by coverage in window 9:105972529-105972534
2012-10-07 18:42:38,078 - DEBUG - Taking top 8 variants by coverage in window 9:105972591-105972592
2012-10-07 18:42:38,908 - DEBUG - Taking top 8 variants by coverage in window 9:105981059-105981060
2012-10-07 18:42:39,229 - DEBUG - Taking top 8 variants by coverage in window 9:105983360-105983361
2012-10-07 18:42:39,816 - DEBUG - Taking top 8 variants by coverage in window 9:105989169-105989191
2012-10-07 18:42:39,934 - DEBUG - Taking top 8 variants by coverage in window 9:105989876-105989877
2012-10-07 18:42:39,955 - DEBUG - Taking top 8 variants by coverage in window 9:105989892-105989893
2012-10-07 18:42:40,346 - DEBUG - Taking top 8 variants by coverage in window 9:105994593-105994594
2012-10-07 18:42:40,497 - DEBUG - Taking top 8 variants by coverage in window 9:105996412-105996413
2012-10-07 18:42:40,538 - DEBUG - Taking top 8 variants by coverage in window 9:105996479-105996481
2012-10-07 18:42:40,639 - DEBUG - Taking top 8 variants by coverage in window 9:105996888-105996889
2012-10-07 18:42:40,698 - DEBUG - Taking top 8 variants by coverage in window 9:105997257-105997258
2012-10-07 18:42:41,908 - DEBUG - Read 100107 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 18:42:42,164 - DEBUG - Read 109110 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 18:42:42,434 - DEBUG - Read 124760 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 18:42:42,746 - DEBUG - Read 129300 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 18:42:43,036 - DEBUG - Read 118375 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 18:42:43,295 - DEBUG - Read 112824 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 18:42:43,565 - DEBUG - Read 120242 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 18:42:43,833 - DEBUG - Read 111068 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 18:42:44,082 - DEBUG - Read 105037 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 18:42:44,342 - DEBUG - Read 102845 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 18:42:44,616 - DEBUG - Read 116957 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 18:42:44,862 - DEBUG - Read 103874 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 18:42:45,117 - DEBUG - Read 107587 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 18:42:45,374 - DEBUG - Read 118339 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 18:42:45,751 - DEBUG - Read 126606 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 18:42:45,996 - DEBUG - Read 96717 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 18:42:46,262 - DEBUG - Read 121688 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 18:42:46,541 - DEBUG - Read 115826 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 18:42:46,792 - DEBUG - Read 104256 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 18:42:47,125 - DEBUG - Read 99053 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 18:42:47,215 - DEBUG - Detected 18178 variants in 100107 reads
2012-10-07 18:42:47,364 - DEBUG - Detected 27160 variants in 109110 reads
2012-10-07 18:42:47,568 - DEBUG - Detected 34616 variants in 124760 reads
2012-10-07 18:42:47,797 - DEBUG - Detected 42175 variants in 129300 reads
2012-10-07 18:42:48,048 - DEBUG - Detected 48866 variants in 118375 reads
2012-10-07 18:42:48,326 - DEBUG - Detected 54717 variants in 112824 reads
2012-10-07 18:42:48,641 - DEBUG - Detected 68048 variants in 120242 reads
2012-10-07 18:42:49,017 - DEBUG - Detected 73300 variants in 111068 reads
2012-10-07 18:42:49,408 - DEBUG - Detected 80490 variants in 105037 reads
2012-10-07 18:42:49,871 - DEBUG - Detected 85041 variants in 102845 reads
2012-10-07 18:42:50,324 - DEBUG - Detected 89620 variants in 116957 reads
2012-10-07 18:42:50,784 - DEBUG - Detected 93239 variants in 103874 reads
2012-10-07 18:42:51,262 - DEBUG - Detected 97164 variants in 107587 reads
2012-10-07 18:42:51,765 - DEBUG - Detected 101116 variants in 118339 reads
2012-10-07 18:42:52,301 - DEBUG - Detected 108292 variants in 126606 reads
2012-10-07 18:42:52,849 - DEBUG - Detected 112074 variants in 96717 reads
2012-10-07 18:42:53,481 - DEBUG - Detected 115832 variants in 121688 reads
2012-10-07 18:42:54,060 - DEBUG - Detected 119897 variants in 115826 reads
2012-10-07 18:42:54,664 - DEBUG - Detected 124235 variants in 104256 reads
2012-10-07 18:42:55,276 - DEBUG - Detected 128460 variants in 99053 reads
2012-10-07 18:42:56,177 - DEBUG - Taking top 8 variants by coverage in window 9:106000212-106000213
2012-10-07 18:42:56,703 - DEBUG - Taking top 8 variants by coverage in window 9:106003945-106003946
2012-10-07 18:42:57,191 - DEBUG - Taking top 8 variants by coverage in window 9:106007940-106007942
2012-10-07 18:42:57,219 - DEBUG - Taking top 8 variants by coverage in window 9:106008143-106008145
2012-10-07 18:42:57,322 - DEBUG - Taking top 8 variants by coverage in window 9:106008406-106008412
2012-10-07 18:42:57,631 - DEBUG - Taking top 8 variants by coverage in window 9:106010577-106010578
2012-10-07 18:42:59,150 - DEBUG - Taking top 8 variants by coverage in window 9:106023767-106023769
2012-10-07 18:42:59,404 - DEBUG - Taking top 8 variants by coverage in window 9:106025547-106025549
2012-10-07 18:42:59,615 - DEBUG - Taking top 8 variants by coverage in window 9:106026257-106026258
2012-10-07 18:43:00,749 - DEBUG - Taking top 8 variants by coverage in window 9:106035146-106035149
2012-10-07 18:43:01,066 - DEBUG - Taking top 8 variants by coverage in window 9:106039352-106039353
2012-10-07 18:43:01,180 - DEBUG - Taking top 8 variants by coverage in window 9:106039532-106039533
2012-10-07 18:43:01,613 - DEBUG - Taking top 8 variants by coverage in window 9:106045157-106045158
2012-10-07 18:43:01,659 - DEBUG - Taking top 8 variants by coverage in window 9:106045224-106045225
2012-10-07 18:43:01,675 - DEBUG - Taking top 8 variants by coverage in window 9:106045234-106045235
2012-10-07 18:43:01,758 - DEBUG - Taking top 8 variants by coverage in window 9:106045267-106045269
2012-10-07 18:43:01,955 - DEBUG - Taking top 8 variants by coverage in window 9:106046138-106046139
2012-10-07 18:43:01,964 - DEBUG - Taking top 8 variants by coverage in window 9:106046139-106046140
2012-10-07 18:43:02,117 - DEBUG - Taking top 8 variants by coverage in window 9:106047520-106047521
2012-10-07 18:43:02,129 - DEBUG - Taking top 8 variants by coverage in window 9:106047523-106047524
2012-10-07 18:43:02,145 - DEBUG - Taking top 8 variants by coverage in window 9:106047526-106047527
2012-10-07 18:43:02,601 - DEBUG - Taking top 8 variants by coverage in window 9:106053033-106053037
2012-10-07 18:43:03,513 - DEBUG - Taking top 8 variants by coverage in window 9:106063028-106063029
2012-10-07 18:43:04,297 - DEBUG - Taking top 8 variants by coverage in window 9:106071248-106071249
2012-10-07 18:43:04,313 - DEBUG - Taking top 8 variants by coverage in window 9:106071265-106071266
2012-10-07 18:43:04,783 - DEBUG - Taking top 8 variants by coverage in window 9:106079497-106079505
2012-10-07 18:43:04,839 - DEBUG - Taking top 8 variants by coverage in window 9:106080003-106080014
2012-10-07 18:43:05,224 - DEBUG - Taking top 8 variants by coverage in window 9:106085346-106085347
2012-10-07 18:43:05,370 - DEBUG - Taking top 8 variants by coverage in window 9:106087963-106087964
2012-10-07 18:43:05,393 - DEBUG - Taking top 8 variants by coverage in window 9:106088161-106088162
2012-10-07 18:43:06,222 - DEBUG - Taking top 8 variants by coverage in window 9:106100664-106100665
2012-10-07 18:43:06,729 - DEBUG - Taking top 8 variants by coverage in window 9:106107027-106107028
2012-10-07 18:43:07,959 - DEBUG - Taking top 8 variants by coverage in window 9:106113279-106113280
2012-10-07 18:43:08,440 - DEBUG - Taking top 8 variants by coverage in window 9:106120484-106120485
2012-10-07 18:43:08,660 - DEBUG - Taking top 8 variants by coverage in window 9:106122092-106122093
2012-10-07 18:43:09,105 - DEBUG - Taking top 8 variants by coverage in window 9:106129596-106129597
2012-10-07 18:43:09,569 - DEBUG - Taking top 8 variants by coverage in window 9:106132564-106132565
2012-10-07 18:43:09,599 - DEBUG - Taking top 8 variants by coverage in window 9:106132583-106132584
2012-10-07 18:43:09,936 - DEBUG - Taking top 8 variants by coverage in window 9:106136243-106136244
2012-10-07 18:43:10,122 - DEBUG - Taking top 8 variants by coverage in window 9:106140201-106140202
2012-10-07 18:43:10,278 - DEBUG - Taking top 8 variants by coverage in window 9:106142389-106142390
2012-10-07 18:43:10,688 - DEBUG - Taking top 8 variants by coverage in window 9:106150897-106150898
2012-10-07 18:43:10,785 - DEBUG - Taking top 8 variants by coverage in window 9:106154491-106154499
2012-10-07 18:43:11,426 - DEBUG - Taking top 8 variants by coverage in window 9:106161729-106161732
2012-10-07 18:43:12,034 - DEBUG - Taking top 8 variants by coverage in window 9:106170241-106170253
2012-10-07 18:43:12,471 - DEBUG - Taking top 8 variants by coverage in window 9:106173908-106173909
2012-10-07 18:43:12,567 - DEBUG - Taking top 8 variants by coverage in window 9:106174463-106174464
2012-10-07 18:43:13,061 - DEBUG - Taking top 8 variants by coverage in window 9:106178997-106178998
2012-10-07 18:43:13,669 - DEBUG - Taking top 8 variants by coverage in window 9:106190019-106190020
2012-10-07 18:43:13,953 - DEBUG - Taking top 8 variants by coverage in window 9:106194088-106194105
2012-10-07 18:43:15,175 - DEBUG - Taking top 8 variants by coverage in window 9:106215963-106215968
2012-10-07 18:43:15,561 - DEBUG - Taking top 8 variants by coverage in window 9:106219844-106219851
2012-10-07 18:43:16,039 - DEBUG - Taking top 8 variants by coverage in window 9:106222692-106222693
2012-10-07 18:43:16,137 - DEBUG - Taking top 8 variants by coverage in window 9:106223526-106223529
2012-10-07 18:43:16,654 - DEBUG - Taking top 8 variants by coverage in window 9:106226393-106226394
2012-10-07 18:43:16,674 - DEBUG - Taking top 8 variants by coverage in window 9:106226396-106226397
2012-10-07 18:43:17,780 - DEBUG - Taking top 8 variants by coverage in window 9:106246617-106246618
2012-10-07 18:43:18,333 - DEBUG - Taking top 8 variants by coverage in window 9:106255802-106255803
2012-10-07 18:43:18,472 - DEBUG - Taking top 8 variants by coverage in window 9:106258893-106258894
2012-10-07 18:43:18,528 - DEBUG - Taking top 8 variants by coverage in window 9:106259006-106259007
2012-10-07 18:43:18,833 - DEBUG - Taking top 8 variants by coverage in window 9:106266202-106266213
2012-10-07 18:43:18,899 - DEBUG - Taking top 8 variants by coverage in window 9:106266229-106266231
2012-10-07 18:43:18,925 - DEBUG - Taking top 8 variants by coverage in window 9:106266234-106266235
2012-10-07 18:43:18,948 - DEBUG - Taking top 8 variants by coverage in window 9:106266258-106266259
2012-10-07 18:43:19,324 - DEBUG - Taking top 8 variants by coverage in window 9:106276730-106276731
2012-10-07 18:43:19,448 - DEBUG - Taking top 8 variants by coverage in window 9:106278476-106278478
2012-10-07 18:43:19,460 - DEBUG - Taking top 8 variants by coverage in window 9:106278896-106278899
2012-10-07 18:43:20,294 - DEBUG - Taking top 8 variants by coverage in window 9:106288120-106288121
2012-10-07 18:43:20,310 - DEBUG - Taking top 8 variants by coverage in window 9:106288162-106288163
2012-10-07 18:43:20,421 - DEBUG - Taking top 8 variants by coverage in window 9:106289359-106289360
2012-10-07 18:43:20,542 - DEBUG - Taking top 8 variants by coverage in window 9:106291122-106291123
2012-10-07 18:43:22,262 - DEBUG - Taking top 8 variants by coverage in window 9:106318585-106318587
2012-10-07 18:43:22,320 - DEBUG - Taking top 8 variants by coverage in window 9:106318681-106318682
2012-10-07 18:43:22,633 - DEBUG - Taking top 8 variants by coverage in window 9:106322368-106322369
2012-10-07 18:43:22,882 - DEBUG - Taking top 8 variants by coverage in window 9:106326274-106326275
2012-10-07 18:43:23,453 - DEBUG - Taking top 8 variants by coverage in window 9:106332776-106332777
2012-10-07 18:43:23,487 - DEBUG - Taking top 8 variants by coverage in window 9:106332792-106332793
2012-10-07 18:43:23,497 - DEBUG - Taking top 8 variants by coverage in window 9:106332800-106332801
2012-10-07 18:43:23,797 - DEBUG - Taking top 8 variants by coverage in window 9:106335645-106335646
2012-10-07 18:43:24,592 - DEBUG - Taking top 8 variants by coverage in window 9:106346128-106346131
2012-10-07 18:43:24,759 - DEBUG - Taking top 8 variants by coverage in window 9:106347983-106347984
2012-10-07 18:43:25,077 - DEBUG - Taking top 8 variants by coverage in window 9:106353969-106353970
2012-10-07 18:43:25,343 - DEBUG - Taking top 8 variants by coverage in window 9:106363946-106363947
2012-10-07 18:43:26,156 - DEBUG - Taking top 8 variants by coverage in window 9:106381062-106381063
2012-10-07 18:43:26,416 - DEBUG - Taking top 8 variants by coverage in window 9:106384475-106384476
2012-10-07 18:43:26,639 - DEBUG - Taking top 8 variants by coverage in window 9:106384888-106384889
2012-10-07 18:43:27,805 - DEBUG - Taking top 8 variants by coverage in window 9:106407228-106407229
2012-10-07 18:43:27,899 - DEBUG - Taking top 8 variants by coverage in window 9:106408262-106408263
2012-10-07 18:43:28,188 - DEBUG - Taking top 8 variants by coverage in window 9:106411155-106411156
2012-10-07 18:43:28,216 - DEBUG - Taking top 8 variants by coverage in window 9:106411172-106411173
2012-10-07 18:43:28,376 - DEBUG - Taking top 8 variants by coverage in window 9:106412179-106412180
2012-10-07 18:43:28,487 - DEBUG - Taking top 8 variants by coverage in window 9:106413068-106413070
2012-10-07 18:43:28,536 - DEBUG - Taking top 8 variants by coverage in window 9:106413105-106413108
2012-10-07 18:43:28,645 - DEBUG - Taking top 8 variants by coverage in window 9:106414263-106414265
2012-10-07 18:43:28,947 - DEBUG - Taking top 8 variants by coverage in window 9:106417516-106417517
2012-10-07 18:43:28,952 - DEBUG - Taking top 8 variants by coverage in window 9:106417517-106417519
2012-10-07 18:43:30,332 - DEBUG - Taking top 8 variants by coverage in window 9:106435560-106435561
2012-10-07 18:43:30,788 - DEBUG - Taking top 8 variants by coverage in window 9:106439927-106439935
2012-10-07 18:43:31,008 - DEBUG - Taking top 8 variants by coverage in window 9:106440055-106440061
2012-10-07 18:43:31,575 - DEBUG - Taking top 8 variants by coverage in window 9:106440253-106440257
2012-10-07 18:43:31,707 - DEBUG - Taking top 8 variants by coverage in window 9:106440291-106440298
2012-10-07 18:43:32,791 - DEBUG - Taking top 8 variants by coverage in window 9:106441453-106441454
2012-10-07 18:43:32,827 - DEBUG - Taking top 8 variants by coverage in window 9:106441843-106441844
2012-10-07 18:43:33,903 - DEBUG - Taking top 8 variants by coverage in window 9:106455700-106455701
2012-10-07 18:43:34,221 - DEBUG - Taking top 8 variants by coverage in window 9:106460714-106460715
2012-10-07 18:43:34,428 - DEBUG - Taking top 8 variants by coverage in window 9:106462438-106462439
2012-10-07 18:43:34,896 - DEBUG - Taking top 8 variants by coverage in window 9:106471422-106471423
2012-10-07 18:43:35,048 - DEBUG - Taking top 8 variants by coverage in window 9:106473666-106473667
2012-10-07 18:43:36,159 - DEBUG - Taking top 8 variants by coverage in window 9:106486725-106486726
2012-10-07 18:43:36,710 - DEBUG - Taking top 8 variants by coverage in window 9:106498969-106498977
2012-10-07 18:43:36,845 - DEBUG - Taking top 8 variants by coverage in window 9:106500508-106500518
2012-10-07 18:43:37,228 - DEBUG - Taking top 8 variants by coverage in window 9:106504012-106504013
2012-10-07 18:43:37,422 - DEBUG - Taking top 8 variants by coverage in window 9:106505254-106505259
2012-10-07 18:43:38,759 - DEBUG - Taking top 8 variants by coverage in window 9:106517775-106517776
2012-10-07 18:43:39,273 - DEBUG - Taking top 8 variants by coverage in window 9:106524694-106524696
2012-10-07 18:43:39,724 - DEBUG - Taking top 8 variants by coverage in window 9:106530980-106530987
2012-10-07 18:43:40,028 - DEBUG - Taking top 8 variants by coverage in window 9:106531007-106531008
2012-10-07 18:43:40,098 - DEBUG - Taking top 8 variants by coverage in window 9:106531012-106531013
2012-10-07 18:43:40,229 - DEBUG - Taking top 8 variants by coverage in window 9:106531016-106531017
2012-10-07 18:43:40,275 - DEBUG - Taking top 8 variants by coverage in window 9:106531019-106531020
2012-10-07 18:43:40,337 - DEBUG - Taking top 8 variants by coverage in window 9:106531036-106531037
2012-10-07 18:43:40,460 - DEBUG - Taking top 8 variants by coverage in window 9:106531054-106531055
2012-10-07 18:43:41,381 - DEBUG - Taking top 8 variants by coverage in window 9:106537606-106537607
2012-10-07 18:43:43,723 - DEBUG - Taking top 8 variants by coverage in window 9:106573977-106573978
2012-10-07 18:43:43,845 - DEBUG - Taking top 8 variants by coverage in window 9:106577808-106577809
2012-10-07 18:43:43,858 - DEBUG - Taking top 8 variants by coverage in window 9:106577810-106577811
2012-10-07 18:43:44,009 - DEBUG - Taking top 8 variants by coverage in window 9:106580533-106580534
2012-10-07 18:43:44,930 - DEBUG - Taking top 8 variants by coverage in window 9:106599148-106599151
2012-10-07 18:43:45,836 - DEBUG - Taking top 8 variants by coverage in window 9:106622231-106622232
2012-10-07 18:43:45,862 - DEBUG - Taking top 8 variants by coverage in window 9:106622257-106622258
2012-10-07 18:43:46,409 - DEBUG - Taking top 8 variants by coverage in window 9:106639103-106639105
2012-10-07 18:43:46,571 - DEBUG - Taking top 8 variants by coverage in window 9:106642142-106642143
2012-10-07 18:43:46,859 - DEBUG - Taking top 8 variants by coverage in window 9:106651542-106651554
2012-10-07 18:43:46,879 - DEBUG - Taking top 8 variants by coverage in window 9:106651562-106651563
2012-10-07 18:43:46,987 - DEBUG - Taking top 8 variants by coverage in window 9:106654431-106654433
2012-10-07 18:43:48,018 - DEBUG - Taking top 8 variants by coverage in window 9:106675174-106675175
2012-10-07 18:43:48,071 - DEBUG - Taking top 8 variants by coverage in window 9:106675713-106675714
2012-10-07 18:43:49,046 - DEBUG - Taking top 8 variants by coverage in window 9:106697074-106697077
2012-10-07 18:43:49,138 - DEBUG - Taking top 8 variants by coverage in window 9:106697741-106697742
2012-10-07 18:43:49,153 - DEBUG - Taking top 8 variants by coverage in window 9:106697742-106697743
2012-10-07 18:43:49,852 - DEBUG - Taking top 8 variants by coverage in window 9:106706813-106706814
2012-10-07 18:43:49,961 - DEBUG - Taking top 8 variants by coverage in window 9:106707827-106707828
2012-10-07 18:43:50,024 - DEBUG - Taking top 8 variants by coverage in window 9:106708045-106708046
2012-10-07 18:43:50,103 - DEBUG - Taking top 8 variants by coverage in window 9:106709316-106709317
2012-10-07 18:43:50,715 - DEBUG - Taking top 8 variants by coverage in window 9:106720841-106720842
2012-10-07 18:43:50,782 - DEBUG - Taking top 8 variants by coverage in window 9:106721266-106721267
2012-10-07 18:43:51,330 - DEBUG - Taking top 8 variants by coverage in window 9:106735506-106735507
2012-10-07 18:43:51,485 - DEBUG - Taking top 8 variants by coverage in window 9:106738718-106738719
2012-10-07 18:43:51,816 - DEBUG - Taking top 8 variants by coverage in window 9:106748089-106748093
2012-10-07 18:43:52,335 - DEBUG - Taking top 8 variants by coverage in window 9:106760631-106760649
2012-10-07 18:43:52,434 - DEBUG - Taking top 8 variants by coverage in window 9:106761635-106761636
2012-10-07 18:43:52,745 - DEBUG - Taking top 8 variants by coverage in window 9:106772409-106772410
2012-10-07 18:43:52,825 - DEBUG - Taking top 8 variants by coverage in window 9:106773682-106773683
2012-10-07 18:43:53,321 - DEBUG - Taking top 8 variants by coverage in window 9:106780958-106780970
2012-10-07 18:43:54,308 - DEBUG - Taking top 8 variants by coverage in window 9:106806512-106806513
2012-10-07 18:43:54,331 - DEBUG - Taking top 8 variants by coverage in window 9:106806513-106806514
2012-10-07 18:43:54,595 - DEBUG - Taking top 8 variants by coverage in window 9:106807195-106807209
2012-10-07 18:43:55,547 - DEBUG - Taking top 8 variants by coverage in window 9:106812234-106812235
2012-10-07 18:43:55,800 - DEBUG - Taking top 8 variants by coverage in window 9:106819388-106819393
2012-10-07 18:43:55,842 - DEBUG - Taking top 8 variants by coverage in window 9:106819579-106819580
2012-10-07 18:43:55,905 - DEBUG - Taking top 8 variants by coverage in window 9:106820767-106820769
2012-10-07 18:43:56,283 - DEBUG - Taking top 8 variants by coverage in window 9:106831618-106831619
2012-10-07 18:43:56,689 - DEBUG - Taking top 8 variants by coverage in window 9:106842625-106842626
2012-10-07 18:43:57,173 - DEBUG - Taking top 8 variants by coverage in window 9:106855111-106855112
2012-10-07 18:43:57,617 - DEBUG - Taking top 8 variants by coverage in window 9:106862939-106862940
2012-10-07 18:43:58,315 - DEBUG - Taking top 8 variants by coverage in window 9:106878533-106878540
2012-10-07 18:43:59,612 - DEBUG - Taking top 8 variants by coverage in window 9:106898902-106898903
2012-10-07 18:43:59,657 - DEBUG - Taking top 8 variants by coverage in window 9:106898977-106898978
2012-10-07 18:44:01,120 - DEBUG - Taking top 8 variants by coverage in window 9:106928767-106928769
2012-10-07 18:44:02,141 - DEBUG - Taking top 8 variants by coverage in window 9:106953151-106953178
2012-10-07 18:44:05,055 - DEBUG - Read 104274 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 18:44:05,330 - DEBUG - Read 113325 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 18:44:05,619 - DEBUG - Read 129156 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 18:44:05,956 - DEBUG - Read 134120 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 18:44:06,270 - DEBUG - Read 121961 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 18:44:06,543 - DEBUG - Read 115325 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 18:44:06,829 - DEBUG - Read 124718 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 18:44:07,120 - DEBUG - Read 115784 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 18:44:07,391 - DEBUG - Read 108185 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 18:44:07,652 - DEBUG - Read 103361 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 18:44:07,944 - DEBUG - Read 121348 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 18:44:08,199 - DEBUG - Read 107815 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 18:44:08,471 - DEBUG - Read 110205 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 18:44:08,822 - DEBUG - Read 123289 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 18:44:09,129 - DEBUG - Read 132196 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 18:44:09,369 - DEBUG - Read 98639 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 18:44:09,647 - DEBUG - Read 125585 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 18:44:09,921 - DEBUG - Read 118036 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 18:44:10,166 - DEBUG - Read 109341 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 18:44:10,441 - DEBUG - Read 102883 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 18:44:10,554 - DEBUG - Detected 17001 variants in 104274 reads
2012-10-07 18:44:10,695 - DEBUG - Detected 24519 variants in 113325 reads
2012-10-07 18:44:10,874 - DEBUG - Detected 31635 variants in 129156 reads
2012-10-07 18:44:11,089 - DEBUG - Detected 38925 variants in 134120 reads
2012-10-07 18:44:11,321 - DEBUG - Detected 44772 variants in 121961 reads
2012-10-07 18:44:11,569 - DEBUG - Detected 49525 variants in 115325 reads
2012-10-07 18:44:11,856 - DEBUG - Detected 62560 variants in 124718 reads
2012-10-07 18:44:12,200 - DEBUG - Detected 67684 variants in 115784 reads
2012-10-07 18:44:12,559 - DEBUG - Detected 74328 variants in 108185 reads
2012-10-07 18:44:12,984 - DEBUG - Detected 78986 variants in 103361 reads
2012-10-07 18:44:13,404 - DEBUG - Detected 83752 variants in 121348 reads
2012-10-07 18:44:13,830 - DEBUG - Detected 87221 variants in 107815 reads
2012-10-07 18:44:14,280 - DEBUG - Detected 91063 variants in 110205 reads
2012-10-07 18:44:14,758 - DEBUG - Detected 95186 variants in 123289 reads
2012-10-07 18:44:15,267 - DEBUG - Detected 102268 variants in 132196 reads
2012-10-07 18:44:15,779 - DEBUG - Detected 105772 variants in 98639 reads
2012-10-07 18:44:16,379 - DEBUG - Detected 109167 variants in 125585 reads
2012-10-07 18:44:16,922 - DEBUG - Detected 113016 variants in 118036 reads
2012-10-07 18:44:17,490 - DEBUG - Detected 116935 variants in 109341 reads
2012-10-07 18:44:18,075 - DEBUG - Detected 121065 variants in 102883 reads
2012-10-07 18:44:19,276 - DEBUG - Taking top 8 variants by coverage in window 9:107010401-107010411
2012-10-07 18:44:21,343 - DEBUG - Taking top 8 variants by coverage in window 9:107063014-107063024
2012-10-07 18:44:21,369 - DEBUG - Taking top 8 variants by coverage in window 9:107063052-107063063
2012-10-07 18:44:21,474 - DEBUG - Taking top 8 variants by coverage in window 9:107065356-107065359
2012-10-07 18:44:21,570 - DEBUG - Taking top 8 variants by coverage in window 9:107065379-107065380
2012-10-07 18:44:21,819 - DEBUG - Taking top 8 variants by coverage in window 9:107067933-107067934
2012-10-07 18:44:22,140 - DEBUG - Taking top 8 variants by coverage in window 9:107071247-107071248
2012-10-07 18:44:22,169 - DEBUG - Taking top 8 variants by coverage in window 9:107071296-107071297
2012-10-07 18:44:22,366 - DEBUG - Taking top 8 variants by coverage in window 9:107076016-107076017
2012-10-07 18:44:22,380 - DEBUG - Taking top 8 variants by coverage in window 9:107076035-107076036
2012-10-07 18:44:23,489 - DEBUG - Taking top 8 variants by coverage in window 9:107114662-107114663
2012-10-07 18:44:23,644 - DEBUG - Taking top 8 variants by coverage in window 9:107115949-107115950
2012-10-07 18:44:23,684 - DEBUG - Taking top 8 variants by coverage in window 9:107122003-107122004
2012-10-07 18:44:23,816 - DEBUG - Taking top 8 variants by coverage in window 9:107122414-107122415
2012-10-07 18:44:24,029 - DEBUG - Taking top 8 variants by coverage in window 9:107123134-107123135
2012-10-07 18:44:24,587 - DEBUG - Taking top 8 variants by coverage in window 9:107135208-107135209
2012-10-07 18:44:24,728 - DEBUG - Taking top 8 variants by coverage in window 9:107138182-107138183
2012-10-07 18:44:25,165 - DEBUG - Taking top 8 variants by coverage in window 9:107144276-107144279
2012-10-07 18:44:25,206 - DEBUG - Taking top 8 variants by coverage in window 9:107144298-107144299
2012-10-07 18:44:25,730 - DEBUG - Taking top 8 variants by coverage in window 9:107151181-107151182
2012-10-07 18:44:26,038 - DEBUG - Taking top 8 variants by coverage in window 9:107154896-107154904
2012-10-07 18:44:26,247 - DEBUG - Taking top 8 variants by coverage in window 9:107157685-107157686
2012-10-07 18:44:26,258 - DEBUG - Taking top 8 variants by coverage in window 9:107157686-107157687
2012-10-07 18:44:26,712 - DEBUG - Taking top 8 variants by coverage in window 9:107166923-107166924
2012-10-07 18:44:27,788 - DEBUG - Taking top 8 variants by coverage in window 9:107177681-107177688
2012-10-07 18:44:27,874 - DEBUG - Taking top 8 variants by coverage in window 9:107177773-107177774
2012-10-07 18:44:28,031 - DEBUG - Taking top 8 variants by coverage in window 9:107179742-107179756
2012-10-07 18:44:28,043 - DEBUG - Taking top 8 variants by coverage in window 9:107179767-107179768
2012-10-07 18:44:28,049 - DEBUG - Taking top 8 variants by coverage in window 9:107179768-107179769
2012-10-07 18:44:28,354 - DEBUG - Taking top 8 variants by coverage in window 9:107184698-107184699
2012-10-07 18:44:28,363 - DEBUG - Taking top 8 variants by coverage in window 9:107184701-107184702
2012-10-07 18:44:28,439 - DEBUG - Taking top 8 variants by coverage in window 9:107185361-107185364
2012-10-07 18:44:29,151 - DEBUG - Taking top 8 variants by coverage in window 9:107191061-107191062
2012-10-07 18:44:30,069 - DEBUG - Taking top 8 variants by coverage in window 9:107197360-107197361
2012-10-07 18:44:30,207 - DEBUG - Taking top 8 variants by coverage in window 9:107200108-107200109
2012-10-07 18:44:30,967 - DEBUG - Taking top 8 variants by coverage in window 9:107209314-107209324
2012-10-07 18:44:31,173 - DEBUG - Taking top 8 variants by coverage in window 9:107209522-107209526
2012-10-07 18:44:32,564 - DEBUG - Taking top 8 variants by coverage in window 9:107224599-107224600
2012-10-07 18:44:32,578 - DEBUG - Taking top 8 variants by coverage in window 9:107224620-107224621
2012-10-07 18:44:32,746 - DEBUG - Taking top 8 variants by coverage in window 9:107226806-107226807
2012-10-07 18:44:33,439 - DEBUG - Taking top 8 variants by coverage in window 9:107237129-107237157
2012-10-07 18:44:33,701 - DEBUG - Taking top 8 variants by coverage in window 9:107241220-107241221
2012-10-07 18:44:33,804 - DEBUG - Taking top 8 variants by coverage in window 9:107242380-107242381
2012-10-07 18:44:34,902 - DEBUG - Taking top 8 variants by coverage in window 9:107256456-107256457
2012-10-07 18:44:35,002 - DEBUG - Taking top 8 variants by coverage in window 9:107259062-107259063
2012-10-07 18:44:35,036 - DEBUG - Taking top 8 variants by coverage in window 9:107259248-107259249
2012-10-07 18:44:35,798 - DEBUG - Taking top 8 variants by coverage in window 9:107267580-107267581
2012-10-07 18:44:35,840 - DEBUG - Taking top 8 variants by coverage in window 9:107267596-107267597
2012-10-07 18:44:35,940 - DEBUG - Taking top 8 variants by coverage in window 9:107268567-107268573
2012-10-07 18:44:37,419 - DEBUG - Taking top 8 variants by coverage in window 9:107293823-107293833
2012-10-07 18:44:38,137 - DEBUG - Taking top 8 variants by coverage in window 9:107304039-107304040
2012-10-07 18:44:38,161 - DEBUG - Taking top 8 variants by coverage in window 9:107304152-107304153
2012-10-07 18:44:39,263 - DEBUG - Taking top 8 variants by coverage in window 9:107316580-107316581
2012-10-07 18:44:39,274 - DEBUG - Taking top 8 variants by coverage in window 9:107316581-107316582
2012-10-07 18:44:39,318 - DEBUG - Taking top 8 variants by coverage in window 9:107316591-107316592
2012-10-07 18:44:40,617 - DEBUG - Taking top 8 variants by coverage in window 9:107327818-107327819
2012-10-07 18:44:41,209 - DEBUG - Taking top 8 variants by coverage in window 9:107338852-107338853
2012-10-07 18:44:42,337 - DEBUG - Taking top 8 variants by coverage in window 9:107358776-107358777
2012-10-07 18:44:43,300 - DEBUG - Taking top 8 variants by coverage in window 9:107371783-107371784
2012-10-07 18:44:43,727 - DEBUG - Taking top 8 variants by coverage in window 9:107374869-107374870
2012-10-07 18:44:44,929 - DEBUG - Taking top 8 variants by coverage in window 9:107389875-107389877
2012-10-07 18:44:45,233 - DEBUG - Taking top 8 variants by coverage in window 9:107392547-107392548
2012-10-07 18:44:45,343 - DEBUG - Taking top 8 variants by coverage in window 9:107393868-107393869
2012-10-07 18:44:45,770 - DEBUG - Taking top 8 variants by coverage in window 9:107393886-107393888
2012-10-07 18:44:45,805 - DEBUG - Taking top 8 variants by coverage in window 9:107393892-107393893
2012-10-07 18:44:47,545 - DEBUG - Taking top 8 variants by coverage in window 9:107420069-107420070
2012-10-07 18:44:48,179 - DEBUG - Taking top 8 variants by coverage in window 9:107432174-107432176
2012-10-07 18:44:48,217 - DEBUG - Taking top 8 variants by coverage in window 9:107432260-107432262
2012-10-07 18:44:48,784 - DEBUG - Taking top 8 variants by coverage in window 9:107438052-107438053
2012-10-07 18:44:50,808 - DEBUG - Taking top 8 variants by coverage in window 9:107478648-107478649
2012-10-07 18:44:50,887 - DEBUG - Taking top 8 variants by coverage in window 9:107478827-107478828
2012-10-07 18:44:51,871 - DEBUG - Taking top 8 variants by coverage in window 9:107497135-107497136
2012-10-07 18:44:53,122 - DEBUG - Taking top 8 variants by coverage in window 9:107518929-107518930
2012-10-07 18:44:53,156 - DEBUG - Taking top 8 variants by coverage in window 9:107519212-107519215
2012-10-07 18:44:53,738 - DEBUG - Taking top 8 variants by coverage in window 9:107523985-107523993
2012-10-07 18:44:54,801 - DEBUG - Taking top 8 variants by coverage in window 9:107539329-107539331
2012-10-07 18:44:55,002 - DEBUG - Taking top 8 variants by coverage in window 9:107541158-107541167
2012-10-07 18:44:55,223 - DEBUG - Taking top 8 variants by coverage in window 9:107541663-107541664
2012-10-07 18:44:55,269 - DEBUG - Taking top 8 variants by coverage in window 9:107541819-107541826
2012-10-07 18:44:55,360 - DEBUG - Taking top 8 variants by coverage in window 9:107542413-107542414
2012-10-07 18:44:55,779 - DEBUG - Taking top 8 variants by coverage in window 9:107548566-107548589
2012-10-07 18:44:55,803 - DEBUG - Taking top 8 variants by coverage in window 9:107548641-107548642
2012-10-07 18:44:56,428 - DEBUG - Taking top 8 variants by coverage in window 9:107555539-107555545
2012-10-07 18:44:57,289 - DEBUG - Taking top 8 variants by coverage in window 9:107568935-107568936
2012-10-07 18:44:58,089 - DEBUG - Taking top 8 variants by coverage in window 9:107580411-107580414
2012-10-07 18:44:58,105 - DEBUG - Taking top 8 variants by coverage in window 9:107580592-107580593
2012-10-07 18:44:59,706 - DEBUG - Taking top 8 variants by coverage in window 9:107617523-107617526
2012-10-07 18:44:59,819 - DEBUG - Taking top 8 variants by coverage in window 9:107617554-107617555
2012-10-07 18:45:00,291 - DEBUG - Taking top 8 variants by coverage in window 9:107622299-107622300
2012-10-07 18:45:00,580 - DEBUG - Taking top 8 variants by coverage in window 9:107626917-107626918
2012-10-07 18:45:00,970 - DEBUG - Taking top 8 variants by coverage in window 9:107633862-107633863
2012-10-07 18:45:01,163 - DEBUG - Taking top 8 variants by coverage in window 9:107634438-107634442
2012-10-07 18:45:01,210 - DEBUG - Taking top 8 variants by coverage in window 9:107634445-107634448
2012-10-07 18:45:01,590 - DEBUG - Taking top 8 variants by coverage in window 9:107639250-107639251
2012-10-07 18:45:02,040 - DEBUG - Taking top 8 variants by coverage in window 9:107646024-107646027
2012-10-07 18:45:02,396 - DEBUG - Taking top 8 variants by coverage in window 9:107655654-107655667
2012-10-07 18:45:02,879 - DEBUG - Taking top 8 variants by coverage in window 9:107656686-107656687
2012-10-07 18:45:03,284 - DEBUG - Taking top 8 variants by coverage in window 9:107664660-107664666
2012-10-07 18:45:03,666 - DEBUG - Taking top 8 variants by coverage in window 9:107669836-107669839
2012-10-07 18:45:04,973 - DEBUG - Taking top 8 variants by coverage in window 9:107690993-107690995
2012-10-07 18:45:05,008 - DEBUG - Taking top 8 variants by coverage in window 9:107691184-107691185
2012-10-07 18:45:05,353 - DEBUG - Taking top 8 variants by coverage in window 9:107695652-107695670
2012-10-07 18:45:05,378 - DEBUG - Taking top 8 variants by coverage in window 9:107696191-107696192
2012-10-07 18:45:05,480 - DEBUG - Taking top 8 variants by coverage in window 9:107697840-107697841
2012-10-07 18:45:05,576 - DEBUG - Taking top 8 variants by coverage in window 9:107699329-107699341
2012-10-07 18:45:05,988 - DEBUG - Taking top 8 variants by coverage in window 9:107708557-107708558
2012-10-07 18:45:06,035 - DEBUG - Taking top 8 variants by coverage in window 9:107709853-107709854
2012-10-07 18:45:06,718 - DEBUG - Taking top 8 variants by coverage in window 9:107723689-107723690
2012-10-07 18:45:06,738 - DEBUG - Taking top 8 variants by coverage in window 9:107723697-107723698
2012-10-07 18:45:06,770 - DEBUG - Taking top 8 variants by coverage in window 9:107723748-107723749
2012-10-07 18:45:06,977 - DEBUG - Taking top 8 variants by coverage in window 9:107728188-107728189
2012-10-07 18:45:07,136 - DEBUG - Taking top 8 variants by coverage in window 9:107730929-107730930
2012-10-07 18:45:07,384 - DEBUG - Taking top 8 variants by coverage in window 9:107736087-107736088
2012-10-07 18:45:08,840 - DEBUG - Taking top 8 variants by coverage in window 9:107770065-107770066
2012-10-07 18:45:09,172 - DEBUG - Taking top 8 variants by coverage in window 9:107777762-107777763
2012-10-07 18:45:09,421 - DEBUG - Taking top 8 variants by coverage in window 9:107779809-107779810
2012-10-07 18:45:10,819 - DEBUG - Taking top 8 variants by coverage in window 9:107800084-107800085
2012-10-07 18:45:11,155 - DEBUG - Taking top 8 variants by coverage in window 9:107805517-107805518
2012-10-07 18:45:11,223 - DEBUG - Taking top 8 variants by coverage in window 9:107805719-107805729
2012-10-07 18:45:12,619 - DEBUG - Taking top 8 variants by coverage in window 9:107835401-107835402
2012-10-07 18:45:12,673 - DEBUG - Taking top 8 variants by coverage in window 9:107835795-107835796
2012-10-07 18:45:14,139 - DEBUG - Taking top 8 variants by coverage in window 9:107866481-107866482
2012-10-07 18:45:14,195 - DEBUG - Taking top 8 variants by coverage in window 9:107866492-107866493
2012-10-07 18:45:16,644 - DEBUG - Taking top 8 variants by coverage in window 9:107903246-107903247
2012-10-07 18:45:16,996 - DEBUG - Taking top 8 variants by coverage in window 9:107911431-107911432
2012-10-07 18:45:17,223 - DEBUG - Taking top 8 variants by coverage in window 9:107914242-107914243
2012-10-07 18:45:17,277 - DEBUG - Taking top 8 variants by coverage in window 9:107914987-107914995
2012-10-07 18:45:17,298 - DEBUG - Taking top 8 variants by coverage in window 9:107915011-107915012
2012-10-07 18:45:17,315 - DEBUG - Taking top 8 variants by coverage in window 9:107915013-107915014
2012-10-07 18:45:17,607 - DEBUG - Taking top 8 variants by coverage in window 9:107920787-107920798
2012-10-07 18:45:17,683 - DEBUG - Taking top 8 variants by coverage in window 9:107920834-107920838
2012-10-07 18:45:18,020 - DEBUG - Taking top 8 variants by coverage in window 9:107922589-107922590
2012-10-07 18:45:18,134 - DEBUG - Taking top 8 variants by coverage in window 9:107924140-107924144
2012-10-07 18:45:18,548 - DEBUG - Taking top 8 variants by coverage in window 9:107928145-107928146
2012-10-07 18:45:19,202 - DEBUG - Taking top 8 variants by coverage in window 9:107939086-107939087
2012-10-07 18:45:19,210 - DEBUG - Taking top 8 variants by coverage in window 9:107939088-107939089
2012-10-07 18:45:19,416 - DEBUG - Taking top 8 variants by coverage in window 9:107939990-107939993
2012-10-07 18:45:19,511 - DEBUG - Taking top 8 variants by coverage in window 9:107940550-107940551
2012-10-07 18:45:19,569 - DEBUG - Taking top 8 variants by coverage in window 9:107941143-107941144
2012-10-07 18:45:19,736 - DEBUG - Taking top 8 variants by coverage in window 9:107942846-107942847
2012-10-07 18:45:20,539 - DEBUG - Taking top 8 variants by coverage in window 9:107961868-107961869
2012-10-07 18:45:21,380 - DEBUG - Taking top 8 variants by coverage in window 9:107977884-107977887
2012-10-07 18:45:21,908 - DEBUG - Taking top 8 variants by coverage in window 9:107980666-107980678
2012-10-07 18:45:24,323 - DEBUG - Read 99865 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 18:45:24,610 - DEBUG - Read 109876 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 18:45:24,899 - DEBUG - Read 123400 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 18:45:25,261 - DEBUG - Read 130252 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 18:45:25,590 - DEBUG - Read 116877 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 18:45:25,856 - DEBUG - Read 111001 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 18:45:26,135 - DEBUG - Read 119047 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 18:45:26,420 - DEBUG - Read 112392 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 18:45:26,680 - DEBUG - Read 105475 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 18:45:26,936 - DEBUG - Read 100593 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 18:45:27,222 - DEBUG - Read 116301 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 18:45:27,483 - DEBUG - Read 103977 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 18:45:27,746 - DEBUG - Read 106743 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 18:45:28,014 - DEBUG - Read 118780 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 18:45:28,307 - DEBUG - Read 127049 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 18:45:28,549 - DEBUG - Read 95850 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 18:45:28,822 - DEBUG - Read 120782 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 18:45:29,116 - DEBUG - Read 113291 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 18:45:29,372 - DEBUG - Read 105070 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 18:45:29,630 - DEBUG - Read 99299 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 18:45:29,720 - DEBUG - Detected 17140 variants in 99865 reads
2012-10-07 18:45:29,869 - DEBUG - Detected 26631 variants in 109876 reads
2012-10-07 18:45:30,067 - DEBUG - Detected 34447 variants in 123400 reads
2012-10-07 18:45:30,329 - DEBUG - Detected 41178 variants in 130252 reads
2012-10-07 18:45:30,589 - DEBUG - Detected 47001 variants in 116877 reads
2012-10-07 18:45:30,873 - DEBUG - Detected 52433 variants in 111001 reads
2012-10-07 18:45:31,196 - DEBUG - Detected 65035 variants in 119047 reads
2012-10-07 18:45:31,582 - DEBUG - Detected 70990 variants in 112392 reads
2012-10-07 18:45:31,990 - DEBUG - Detected 76419 variants in 105475 reads
2012-10-07 18:45:32,418 - DEBUG - Detected 80620 variants in 100593 reads
2012-10-07 18:45:32,925 - DEBUG - Detected 85255 variants in 116301 reads
2012-10-07 18:45:33,401 - DEBUG - Detected 89380 variants in 103977 reads
2012-10-07 18:45:33,901 - DEBUG - Detected 93191 variants in 106743 reads
2012-10-07 18:45:34,432 - DEBUG - Detected 97556 variants in 118780 reads
2012-10-07 18:45:34,987 - DEBUG - Detected 104444 variants in 127049 reads
2012-10-07 18:45:35,547 - DEBUG - Detected 108189 variants in 95850 reads
2012-10-07 18:45:36,156 - DEBUG - Detected 111690 variants in 120782 reads
2012-10-07 18:45:36,841 - DEBUG - Detected 115709 variants in 113291 reads
2012-10-07 18:45:37,475 - DEBUG - Detected 119988 variants in 105070 reads
2012-10-07 18:45:38,136 - DEBUG - Detected 123845 variants in 99299 reads
2012-10-07 18:45:39,483 - DEBUG - Taking top 8 variants by coverage in window 9:108006658-108006659
2012-10-07 18:45:39,878 - DEBUG - Taking top 8 variants by coverage in window 9:108020386-108020387
2012-10-07 18:45:41,227 - DEBUG - Taking top 8 variants by coverage in window 9:108037351-108037353
2012-10-07 18:45:43,467 - DEBUG - Taking top 8 variants by coverage in window 9:108058424-108058425
2012-10-07 18:45:43,724 - DEBUG - Taking top 8 variants by coverage in window 9:108061652-108061653
2012-10-07 18:45:43,754 - DEBUG - Taking top 8 variants by coverage in window 9:108061663-108061664
2012-10-07 18:45:43,894 - DEBUG - Taking top 8 variants by coverage in window 9:108062202-108062203
2012-10-07 18:45:44,051 - DEBUG - Taking top 8 variants by coverage in window 9:108062720-108062721
2012-10-07 18:45:44,214 - DEBUG - Taking top 8 variants by coverage in window 9:108064003-108064004
2012-10-07 18:45:44,248 - DEBUG - Taking top 8 variants by coverage in window 9:108064521-108064522
2012-10-07 18:45:45,430 - DEBUG - Taking top 8 variants by coverage in window 9:108081581-108081582
2012-10-07 18:45:48,410 - DEBUG - Taking top 8 variants by coverage in window 9:108118105-108118106
2012-10-07 18:45:48,492 - DEBUG - Taking top 8 variants by coverage in window 9:108118779-108118780
2012-10-07 18:45:48,789 - DEBUG - Taking top 8 variants by coverage in window 9:108120292-108120293
2012-10-07 18:45:48,850 - DEBUG - Taking top 8 variants by coverage in window 9:108120312-108120313
2012-10-07 18:45:48,937 - DEBUG - Taking top 8 variants by coverage in window 9:108121949-108121950
2012-10-07 18:45:49,623 - DEBUG - Taking top 8 variants by coverage in window 9:108133353-108133358
2012-10-07 18:45:49,664 - DEBUG - Taking top 8 variants by coverage in window 9:108133567-108133568
2012-10-07 18:45:50,831 - DEBUG - Taking top 8 variants by coverage in window 9:108149316-108149317
2012-10-07 18:45:50,849 - DEBUG - Taking top 8 variants by coverage in window 9:108149318-108149319
2012-10-07 18:45:51,100 - DEBUG - Taking top 8 variants by coverage in window 9:108150038-108150048
2012-10-07 18:45:51,359 - DEBUG - Taking top 8 variants by coverage in window 9:108151203-108151204
2012-10-07 18:45:51,430 - DEBUG - Taking top 8 variants by coverage in window 9:108152396-108152397
2012-10-07 18:45:51,682 - DEBUG - Taking top 8 variants by coverage in window 9:108157180-108157190
2012-10-07 18:45:51,764 - DEBUG - Taking top 8 variants by coverage in window 9:108158193-108158194
2012-10-07 18:45:51,781 - DEBUG - Taking top 8 variants by coverage in window 9:108158211-108158212
2012-10-07 18:45:51,797 - DEBUG - Taking top 8 variants by coverage in window 9:108158391-108158392
2012-10-07 18:45:52,571 - DEBUG - Taking top 8 variants by coverage in window 9:108176332-108176334
2012-10-07 18:45:52,962 - DEBUG - Taking top 8 variants by coverage in window 9:108181359-108181360
2012-10-07 18:45:53,387 - DEBUG - Taking top 8 variants by coverage in window 9:108183529-108183530
2012-10-07 18:45:53,549 - DEBUG - Taking top 8 variants by coverage in window 9:108183595-108183596
2012-10-07 18:45:53,884 - DEBUG - Taking top 8 variants by coverage in window 9:108188612-108188618
2012-10-07 18:45:54,030 - DEBUG - Taking top 8 variants by coverage in window 9:108190128-108190130
2012-10-07 18:45:54,806 - DEBUG - Taking top 8 variants by coverage in window 9:108207014-108207015
2012-10-07 18:45:54,857 - DEBUG - Taking top 8 variants by coverage in window 9:108210318-108210319
2012-10-07 18:45:54,997 - DEBUG - Taking top 8 variants by coverage in window 9:108211618-108211619
2012-10-07 18:45:55,569 - DEBUG - Taking top 8 variants by coverage in window 9:108222386-108222387
2012-10-07 18:45:55,849 - DEBUG - Taking top 8 variants by coverage in window 9:108229027-108229028
2012-10-07 18:45:55,901 - DEBUG - Taking top 8 variants by coverage in window 9:108229419-108229420
2012-10-07 18:45:55,914 - DEBUG - Taking top 8 variants by coverage in window 9:108229421-108229423
2012-10-07 18:45:56,112 - DEBUG - Taking top 8 variants by coverage in window 9:108233487-108233488
2012-10-07 18:45:56,644 - DEBUG - Taking top 8 variants by coverage in window 9:108244521-108244537
2012-10-07 18:45:56,748 - DEBUG - Taking top 8 variants by coverage in window 9:108244539-108244540
2012-10-07 18:45:56,770 - DEBUG - Taking top 8 variants by coverage in window 9:108244549-108244550
2012-10-07 18:45:56,975 - DEBUG - Taking top 8 variants by coverage in window 9:108245691-108245692
2012-10-07 18:45:56,985 - DEBUG - Taking top 8 variants by coverage in window 9:108245705-108245707
2012-10-07 18:45:57,057 - DEBUG - Taking top 8 variants by coverage in window 9:108246927-108246928
2012-10-07 18:45:57,118 - DEBUG - Taking top 8 variants by coverage in window 9:108247475-108247476
2012-10-07 18:45:57,669 - DEBUG - Taking top 8 variants by coverage in window 9:108259700-108259703
2012-10-07 18:45:57,689 - DEBUG - Taking top 8 variants by coverage in window 9:108259704-108259705
2012-10-07 18:45:57,841 - DEBUG - Taking top 8 variants by coverage in window 9:108260289-108260290
2012-10-07 18:45:58,667 - DEBUG - Taking top 8 variants by coverage in window 9:108277846-108277850
2012-10-07 18:45:58,749 - DEBUG - Taking top 8 variants by coverage in window 9:108278225-108278226
2012-10-07 18:45:59,590 - DEBUG - Taking top 8 variants by coverage in window 9:108297148-108297149
2012-10-07 18:45:59,678 - DEBUG - Taking top 8 variants by coverage in window 9:108298256-108298257
2012-10-07 18:45:59,711 - DEBUG - Taking top 8 variants by coverage in window 9:108298483-108298484
2012-10-07 18:46:00,239 - DEBUG - Taking top 8 variants by coverage in window 9:108306047-108306048
2012-10-07 18:46:01,033 - DEBUG - Taking top 8 variants by coverage in window 9:108317089-108317092
2012-10-07 18:46:03,088 - DEBUG - Taking top 8 variants by coverage in window 9:108345634-108345636
2012-10-07 18:46:03,303 - DEBUG - Taking top 8 variants by coverage in window 9:108346999-108347000
2012-10-07 18:46:04,007 - DEBUG - Taking top 8 variants by coverage in window 9:108360569-108360570
2012-10-07 18:46:04,360 - DEBUG - Taking top 8 variants by coverage in window 9:108366381-108366382
2012-10-07 18:46:04,664 - DEBUG - Taking top 8 variants by coverage in window 9:108370237-108370238
2012-10-07 18:46:05,059 - DEBUG - Taking top 8 variants by coverage in window 9:108375340-108375341
2012-10-07 18:46:05,128 - DEBUG - Taking top 8 variants by coverage in window 9:108376234-108376236
2012-10-07 18:46:05,569 - DEBUG - Taking top 8 variants by coverage in window 9:108387022-108387023
2012-10-07 18:46:07,061 - DEBUG - Taking top 8 variants by coverage in window 9:108428387-108428388
2012-10-07 18:46:07,441 - DEBUG - Taking top 8 variants by coverage in window 9:108437220-108437221
2012-10-07 18:46:07,524 - DEBUG - Taking top 8 variants by coverage in window 9:108439056-108439058
2012-10-07 18:46:07,733 - DEBUG - Taking top 8 variants by coverage in window 9:108440733-108440734
2012-10-07 18:46:07,823 - DEBUG - Taking top 8 variants by coverage in window 9:108441774-108441775
2012-10-07 18:46:08,085 - DEBUG - Taking top 8 variants by coverage in window 9:108446397-108446398
2012-10-07 18:46:08,104 - DEBUG - Taking top 8 variants by coverage in window 9:108446399-108446400
2012-10-07 18:46:08,486 - DEBUG - Taking top 8 variants by coverage in window 9:108448394-108448395
2012-10-07 18:46:08,643 - DEBUG - Taking top 8 variants by coverage in window 9:108450755-108450756
2012-10-07 18:46:09,087 - DEBUG - Taking top 8 variants by coverage in window 9:108459447-108459448
2012-10-07 18:46:10,335 - DEBUG - Taking top 8 variants by coverage in window 9:108486484-108486485
2012-10-07 18:46:10,449 - DEBUG - Taking top 8 variants by coverage in window 9:108487425-108487441
2012-10-07 18:46:10,611 - DEBUG - Taking top 8 variants by coverage in window 9:108488270-108488271
2012-10-07 18:46:10,672 - DEBUG - Taking top 8 variants by coverage in window 9:108488290-108488291
2012-10-07 18:46:11,082 - DEBUG - Taking top 8 variants by coverage in window 9:108494465-108494466
2012-10-07 18:46:11,122 - DEBUG - Taking top 8 variants by coverage in window 9:108495036-108495037
2012-10-07 18:46:11,292 - DEBUG - Taking top 8 variants by coverage in window 9:108497701-108497703
2012-10-07 18:46:11,301 - DEBUG - Taking top 8 variants by coverage in window 9:108497718-108497721
2012-10-07 18:46:12,135 - DEBUG - Taking top 8 variants by coverage in window 9:108514662-108514663
2012-10-07 18:46:12,194 - DEBUG - Taking top 8 variants by coverage in window 9:108515041-108515042
2012-10-07 18:46:12,327 - DEBUG - Taking top 8 variants by coverage in window 9:108515545-108515546
2012-10-07 18:46:12,580 - DEBUG - Taking top 8 variants by coverage in window 9:108519862-108519863
2012-10-07 18:46:12,614 - DEBUG - Taking top 8 variants by coverage in window 9:108519865-108519867
2012-10-07 18:46:13,031 - DEBUG - Taking top 8 variants by coverage in window 9:108524225-108524226
2012-10-07 18:46:13,066 - DEBUG - Taking top 8 variants by coverage in window 9:108524235-108524239
2012-10-07 18:46:14,044 - DEBUG - Taking top 8 variants by coverage in window 9:108543447-108543448
2012-10-07 18:46:14,786 - DEBUG - Taking top 8 variants by coverage in window 9:108561239-108561240
2012-10-07 18:46:14,796 - DEBUG - Taking top 8 variants by coverage in window 9:108561267-108561268
2012-10-07 18:46:15,000 - DEBUG - Taking top 8 variants by coverage in window 9:108564722-108564723
2012-10-07 18:46:15,488 - DEBUG - Taking top 8 variants by coverage in window 9:108570919-108570921
2012-10-07 18:46:15,811 - DEBUG - Taking top 8 variants by coverage in window 9:108574283-108574285
2012-10-07 18:46:15,952 - DEBUG - Taking top 8 variants by coverage in window 9:108576352-108576353
2012-10-07 18:46:16,110 - DEBUG - Taking top 8 variants by coverage in window 9:108577334-108577340
2012-10-07 18:46:16,878 - DEBUG - Taking top 8 variants by coverage in window 9:108590845-108590846
2012-10-07 18:46:16,900 - DEBUG - Taking top 8 variants by coverage in window 9:108590847-108590848
2012-10-07 18:46:17,128 - DEBUG - Taking top 8 variants by coverage in window 9:108598015-108598016
2012-10-07 18:46:17,859 - DEBUG - Taking top 8 variants by coverage in window 9:108610045-108610047
2012-10-07 18:46:18,077 - DEBUG - Taking top 8 variants by coverage in window 9:108613983-108613984
2012-10-07 18:46:18,344 - DEBUG - Taking top 8 variants by coverage in window 9:108619333-108619334
2012-10-07 18:46:18,414 - DEBUG - Taking top 8 variants by coverage in window 9:108620833-108620837
2012-10-07 18:46:19,733 - DEBUG - Taking top 8 variants by coverage in window 9:108646078-108646079
2012-10-07 18:46:20,078 - DEBUG - Taking top 8 variants by coverage in window 9:108654084-108654085
2012-10-07 18:46:20,300 - DEBUG - Taking top 8 variants by coverage in window 9:108657321-108657322
2012-10-07 18:46:20,636 - DEBUG - Taking top 8 variants by coverage in window 9:108660421-108660422
2012-10-07 18:46:20,650 - DEBUG - Taking top 8 variants by coverage in window 9:108660439-108660440
2012-10-07 18:46:20,669 - DEBUG - Taking top 8 variants by coverage in window 9:108660581-108660582
2012-10-07 18:46:20,841 - DEBUG - Taking top 8 variants by coverage in window 9:108661577-108661578
2012-10-07 18:46:21,541 - DEBUG - Taking top 8 variants by coverage in window 9:108670623-108670624
2012-10-07 18:46:21,964 - DEBUG - Taking top 8 variants by coverage in window 9:108675090-108675091
2012-10-07 18:46:22,668 - DEBUG - Taking top 8 variants by coverage in window 9:108687848-108687850
2012-10-07 18:46:23,092 - DEBUG - Taking top 8 variants by coverage in window 9:108694917-108694918
2012-10-07 18:46:23,574 - DEBUG - Taking top 8 variants by coverage in window 9:108709199-108709206
2012-10-07 18:46:24,008 - DEBUG - Taking top 8 variants by coverage in window 9:108718661-108718662
2012-10-07 18:46:24,775 - DEBUG - Taking top 8 variants by coverage in window 9:108741869-108741878
2012-10-07 18:46:25,331 - DEBUG - Taking top 8 variants by coverage in window 9:108750410-108750411
2012-10-07 18:46:25,429 - DEBUG - Taking top 8 variants by coverage in window 9:108752972-108752973
2012-10-07 18:46:25,739 - DEBUG - Taking top 8 variants by coverage in window 9:108764473-108764474
2012-10-07 18:46:25,758 - DEBUG - Taking top 8 variants by coverage in window 9:108814474-108814475
2012-10-07 18:46:25,788 - DEBUG - Taking top 8 variants by coverage in window 9:108814512-108814518
2012-10-07 18:46:26,347 - DEBUG - Taking top 8 variants by coverage in window 9:108814603-108814604
2012-10-07 18:46:26,555 - DEBUG - Taking top 8 variants by coverage in window 9:108818299-108818300
2012-10-07 18:46:27,022 - DEBUG - Taking top 8 variants by coverage in window 9:108829424-108829426
2012-10-07 18:46:27,038 - DEBUG - Taking top 8 variants by coverage in window 9:108829599-108829600
2012-10-07 18:46:27,047 - DEBUG - Taking top 8 variants by coverage in window 9:108829614-108829617
2012-10-07 18:46:27,129 - DEBUG - Taking top 8 variants by coverage in window 9:108830002-108830007
2012-10-07 18:46:28,007 - DEBUG - Taking top 8 variants by coverage in window 9:108848577-108848578
2012-10-07 18:46:28,039 - DEBUG - Taking top 8 variants by coverage in window 9:108848594-108848595
2012-10-07 18:46:28,325 - DEBUG - Taking top 8 variants by coverage in window 9:108854375-108854376
2012-10-07 18:46:28,971 - DEBUG - Taking top 8 variants by coverage in window 9:108866394-108866395
2012-10-07 18:46:29,204 - DEBUG - Taking top 8 variants by coverage in window 9:108868862-108868863
2012-10-07 18:46:29,760 - DEBUG - Taking top 8 variants by coverage in window 9:108881009-108881011
2012-10-07 18:46:30,006 - DEBUG - Taking top 8 variants by coverage in window 9:108881021-108881022
2012-10-07 18:46:31,220 - DEBUG - Taking top 8 variants by coverage in window 9:108902922-108902923
2012-10-07 18:46:31,479 - DEBUG - Taking top 8 variants by coverage in window 9:108905755-108905756
2012-10-07 18:46:31,605 - DEBUG - Taking top 8 variants by coverage in window 9:108907223-108907231
2012-10-07 18:46:32,029 - DEBUG - Taking top 8 variants by coverage in window 9:108910139-108910140
2012-10-07 18:46:32,222 - DEBUG - Taking top 8 variants by coverage in window 9:108912704-108912705
2012-10-07 18:46:32,576 - DEBUG - Taking top 8 variants by coverage in window 9:108915924-108915925
2012-10-07 18:46:32,644 - DEBUG - Taking top 8 variants by coverage in window 9:108916183-108916184
2012-10-07 18:46:32,848 - DEBUG - Taking top 8 variants by coverage in window 9:108919710-108919711
2012-10-07 18:46:32,996 - DEBUG - Taking top 8 variants by coverage in window 9:108920470-108920475
2012-10-07 18:46:33,349 - DEBUG - Taking top 8 variants by coverage in window 9:108923847-108923853
2012-10-07 18:46:33,533 - DEBUG - Taking top 8 variants by coverage in window 9:108926156-108926157
2012-10-07 18:46:33,569 - DEBUG - Taking top 8 variants by coverage in window 9:108926417-108926418
2012-10-07 18:46:34,259 - DEBUG - Taking top 8 variants by coverage in window 9:108932757-108932758
2012-10-07 18:46:34,302 - DEBUG - Taking top 8 variants by coverage in window 9:108932773-108932774
2012-10-07 18:46:35,596 - DEBUG - Taking top 8 variants by coverage in window 9:108947754-108947756
2012-10-07 18:46:35,804 - DEBUG - Taking top 8 variants by coverage in window 9:108950540-108950544
2012-10-07 18:46:36,041 - DEBUG - Taking top 8 variants by coverage in window 9:108950551-108950552
2012-10-07 18:46:38,550 - DEBUG - Taking top 8 variants by coverage in window 9:108987735-108987738
2012-10-07 18:46:38,646 - DEBUG - Taking top 8 variants by coverage in window 9:108987757-108987758
2012-10-07 18:46:38,696 - DEBUG - Taking top 8 variants by coverage in window 9:108987766-108987768
2012-10-07 18:46:38,871 - DEBUG - Taking top 8 variants by coverage in window 9:108988595-108988596
2012-10-07 18:46:38,988 - DEBUG - Taking top 8 variants by coverage in window 9:108991188-108991192
2012-10-07 18:46:39,222 - DEBUG - Taking top 8 variants by coverage in window 9:108993830-108993836
2012-10-07 18:46:40,455 - DEBUG - Read 83500 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 18:46:40,697 - DEBUG - Read 91821 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 18:46:40,978 - DEBUG - Read 110196 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 18:46:41,272 - DEBUG - Read 107720 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 18:46:41,559 - DEBUG - Read 101863 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 18:46:41,815 - DEBUG - Read 97743 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 18:46:42,082 - DEBUG - Read 102405 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 18:46:42,334 - DEBUG - Read 91115 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 18:46:42,570 - DEBUG - Read 87416 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 18:46:42,816 - DEBUG - Read 89781 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 18:46:43,094 - DEBUG - Read 101295 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 18:46:43,324 - DEBUG - Read 88645 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 18:46:43,566 - DEBUG - Read 89629 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 18:46:43,811 - DEBUG - Read 98581 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 18:46:44,081 - DEBUG - Read 106896 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 18:46:44,380 - DEBUG - Read 82443 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 18:46:44,635 - DEBUG - Read 102909 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 18:46:44,952 - DEBUG - Read 97870 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 18:46:45,234 - DEBUG - Read 85105 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 18:46:45,482 - DEBUG - Read 86441 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 18:46:45,570 - DEBUG - Detected 20778 variants in 83500 reads
2012-10-07 18:46:45,717 - DEBUG - Detected 28848 variants in 91821 reads
2012-10-07 18:46:45,911 - DEBUG - Detected 37752 variants in 110196 reads
2012-10-07 18:46:46,155 - DEBUG - Detected 45900 variants in 107720 reads
2012-10-07 18:46:46,410 - DEBUG - Detected 52466 variants in 101863 reads
2012-10-07 18:46:46,688 - DEBUG - Detected 57877 variants in 97743 reads
2012-10-07 18:46:47,006 - DEBUG - Detected 70178 variants in 102405 reads
2012-10-07 18:46:47,368 - DEBUG - Detected 75127 variants in 91115 reads
2012-10-07 18:46:47,749 - DEBUG - Detected 80457 variants in 87416 reads
2012-10-07 18:46:48,168 - DEBUG - Detected 84732 variants in 89781 reads
2012-10-07 18:46:48,602 - DEBUG - Detected 89263 variants in 101295 reads
2012-10-07 18:46:49,082 - DEBUG - Detected 93134 variants in 88645 reads
2012-10-07 18:46:49,540 - DEBUG - Detected 96821 variants in 89629 reads
2012-10-07 18:46:50,027 - DEBUG - Detected 100533 variants in 98581 reads
2012-10-07 18:46:50,542 - DEBUG - Detected 107035 variants in 106896 reads
2012-10-07 18:46:51,075 - DEBUG - Detected 110490 variants in 82443 reads
2012-10-07 18:46:51,645 - DEBUG - Detected 113880 variants in 102909 reads
2012-10-07 18:46:52,278 - DEBUG - Detected 117522 variants in 97870 reads
2012-10-07 18:46:52,870 - DEBUG - Detected 121192 variants in 85105 reads
2012-10-07 18:46:53,484 - DEBUG - Detected 125763 variants in 86441 reads
2012-10-07 18:46:54,913 - DEBUG - Taking top 8 variants by coverage in window 9:109010315-109010316
2012-10-07 18:46:54,962 - DEBUG - Taking top 8 variants by coverage in window 9:109010881-109010882
2012-10-07 18:46:55,405 - DEBUG - Taking top 8 variants by coverage in window 9:109018749-109018750
2012-10-07 18:46:55,637 - DEBUG - Taking top 8 variants by coverage in window 9:109020962-109020963
2012-10-07 18:46:55,965 - DEBUG - Taking top 8 variants by coverage in window 9:109024430-109024431
2012-10-07 18:46:56,515 - DEBUG - Taking top 8 variants by coverage in window 9:109029076-109029077
2012-10-07 18:46:56,577 - DEBUG - Taking top 8 variants by coverage in window 9:109029718-109029720
2012-10-07 18:46:57,640 - DEBUG - Taking top 8 variants by coverage in window 9:109043885-109043897
2012-10-07 18:46:57,680 - DEBUG - Taking top 8 variants by coverage in window 9:109044439-109044440
2012-10-07 18:46:59,469 - DEBUG - Taking top 8 variants by coverage in window 9:109074980-109074981
2012-10-07 18:46:59,877 - DEBUG - Taking top 8 variants by coverage in window 9:109080549-109080550
2012-10-07 18:47:00,273 - DEBUG - Taking top 8 variants by coverage in window 9:109088769-109088770
2012-10-07 18:47:00,802 - DEBUG - Taking top 8 variants by coverage in window 9:109096779-109096780
2012-10-07 18:47:02,615 - DEBUG - Taking top 8 variants by coverage in window 9:109118126-109118128
2012-10-07 18:47:02,649 - DEBUG - Taking top 8 variants by coverage in window 9:109118134-109118135
2012-10-07 18:47:04,250 - DEBUG - Taking top 8 variants by coverage in window 9:109135340-109135342
2012-10-07 18:47:05,321 - DEBUG - Taking top 8 variants by coverage in window 9:109162425-109162426
2012-10-07 18:47:09,115 - DEBUG - Taking top 8 variants by coverage in window 9:109308176-109308177
2012-10-07 18:47:09,378 - DEBUG - Taking top 8 variants by coverage in window 9:109311720-109311721
2012-10-07 18:47:10,465 - DEBUG - Taking top 8 variants by coverage in window 9:109333339-109333340
2012-10-07 18:47:11,119 - DEBUG - Taking top 8 variants by coverage in window 9:109342398-109342399
2012-10-07 18:47:14,063 - DEBUG - Taking top 8 variants by coverage in window 9:109387225-109387226
2012-10-07 18:47:15,283 - DEBUG - Taking top 8 variants by coverage in window 9:109412696-109412697
2012-10-07 18:47:16,528 - DEBUG - Taking top 8 variants by coverage in window 9:109427183-109427184
2012-10-07 18:47:16,561 - DEBUG - Taking top 8 variants by coverage in window 9:109427233-109427234
2012-10-07 18:47:16,615 - DEBUG - Taking top 8 variants by coverage in window 9:109427261-109427262
2012-10-07 18:47:16,685 - DEBUG - Taking top 8 variants by coverage in window 9:109427818-109427819
2012-10-07 18:47:17,377 - DEBUG - Taking top 8 variants by coverage in window 9:109435746-109435747
2012-10-07 18:47:17,416 - DEBUG - Taking top 8 variants by coverage in window 9:109435773-109435774
2012-10-07 18:47:17,432 - DEBUG - Taking top 8 variants by coverage in window 9:109435780-109435781
2012-10-07 18:47:17,848 - DEBUG - Taking top 8 variants by coverage in window 9:109438452-109438453
2012-10-07 18:47:19,567 - DEBUG - Taking top 8 variants by coverage in window 9:109455620-109455621
2012-10-07 18:47:19,669 - DEBUG - Taking top 8 variants by coverage in window 9:109455728-109455729
2012-10-07 18:47:20,009 - DEBUG - Taking top 8 variants by coverage in window 9:109461105-109461106
2012-10-07 18:47:22,149 - DEBUG - Taking top 8 variants by coverage in window 9:109480278-109480279
2012-10-07 18:47:23,189 - DEBUG - Taking top 8 variants by coverage in window 9:109500164-109500165
2012-10-07 18:47:24,182 - DEBUG - Taking top 8 variants by coverage in window 9:109514307-109514308
2012-10-07 18:47:24,698 - DEBUG - Taking top 8 variants by coverage in window 9:109523523-109523524
2012-10-07 18:47:24,722 - DEBUG - Taking top 8 variants by coverage in window 9:109523550-109523551
2012-10-07 18:47:25,281 - DEBUG - Taking top 8 variants by coverage in window 9:109531083-109531085
2012-10-07 18:47:25,753 - DEBUG - Taking top 8 variants by coverage in window 9:109537779-109537780
2012-10-07 18:47:27,186 - DEBUG - Taking top 8 variants by coverage in window 9:109548186-109548187
2012-10-07 18:47:27,471 - DEBUG - Taking top 8 variants by coverage in window 9:109553932-109553933
2012-10-07 18:47:28,820 - DEBUG - Taking top 8 variants by coverage in window 9:109565088-109565090
2012-10-07 18:47:28,938 - DEBUG - Taking top 8 variants by coverage in window 9:109565257-109565259
2012-10-07 18:47:29,180 - DEBUG - Taking top 8 variants by coverage in window 9:109569335-109569336
2012-10-07 18:47:29,408 - DEBUG - Taking top 8 variants by coverage in window 9:109572092-109572093
2012-10-07 18:47:30,379 - DEBUG - Taking top 8 variants by coverage in window 9:109588538-109588539
2012-10-07 18:47:31,472 - DEBUG - Taking top 8 variants by coverage in window 9:109603055-109603071
2012-10-07 18:47:31,518 - DEBUG - Taking top 8 variants by coverage in window 9:109603105-109603106
2012-10-07 18:47:31,534 - DEBUG - Taking top 8 variants by coverage in window 9:109603109-109603113
2012-10-07 18:47:31,655 - DEBUG - Taking top 8 variants by coverage in window 9:109603347-109603348
2012-10-07 18:47:31,946 - DEBUG - Taking top 8 variants by coverage in window 9:109606678-109606679
2012-10-07 18:47:32,775 - DEBUG - Taking top 8 variants by coverage in window 9:109620911-109620912
2012-10-07 18:47:33,342 - DEBUG - Taking top 8 variants by coverage in window 9:109627707-109627713
2012-10-07 18:47:34,210 - DEBUG - Taking top 8 variants by coverage in window 9:109636430-109636434
2012-10-07 18:47:36,641 - DEBUG - Taking top 8 variants by coverage in window 9:109669040-109669041
2012-10-07 18:47:37,475 - DEBUG - Taking top 8 variants by coverage in window 9:109679010-109679012
2012-10-07 18:47:38,799 - DEBUG - Taking top 8 variants by coverage in window 9:109691399-109691400
2012-10-07 18:47:39,841 - DEBUG - Taking top 8 variants by coverage in window 9:109701077-109701078
2012-10-07 18:47:39,911 - DEBUG - Taking top 8 variants by coverage in window 9:109701393-109701395
2012-10-07 18:47:41,797 - DEBUG - Taking top 8 variants by coverage in window 9:109714528-109714530
2012-10-07 18:47:42,479 - DEBUG - Taking top 8 variants by coverage in window 9:109721033-109721034
2012-10-07 18:47:42,860 - DEBUG - Taking top 8 variants by coverage in window 9:109726058-109726059
2012-10-07 18:47:42,878 - DEBUG - Taking top 8 variants by coverage in window 9:109726060-109726061
2012-10-07 18:47:43,047 - DEBUG - Taking top 8 variants by coverage in window 9:109726890-109726891
2012-10-07 18:47:43,564 - DEBUG - Taking top 8 variants by coverage in window 9:109732460-109732461
2012-10-07 18:47:43,643 - DEBUG - Taking top 8 variants by coverage in window 9:109732673-109732674
2012-10-07 18:47:44,702 - DEBUG - Taking top 8 variants by coverage in window 9:109744222-109744223
2012-10-07 18:47:45,048 - DEBUG - Taking top 8 variants by coverage in window 9:109746858-109746859
2012-10-07 18:47:45,858 - DEBUG - Taking top 8 variants by coverage in window 9:109754555-109754556
2012-10-07 18:47:45,874 - DEBUG - Taking top 8 variants by coverage in window 9:109754556-109754557
2012-10-07 18:47:45,992 - DEBUG - Taking top 8 variants by coverage in window 9:109754720-109754721
2012-10-07 18:47:46,012 - DEBUG - Taking top 8 variants by coverage in window 9:109754725-109754726
2012-10-07 18:47:46,126 - DEBUG - Taking top 8 variants by coverage in window 9:109755608-109755609
2012-10-07 18:47:46,236 - DEBUG - Taking top 8 variants by coverage in window 9:109756236-109756237
2012-10-07 18:47:46,413 - DEBUG - Taking top 8 variants by coverage in window 9:109757469-109757470
2012-10-07 18:47:47,461 - DEBUG - Taking top 8 variants by coverage in window 9:109767834-109767836
2012-10-07 18:47:47,499 - DEBUG - Taking top 8 variants by coverage in window 9:109768036-109768037
2012-10-07 18:47:48,128 - DEBUG - Taking top 8 variants by coverage in window 9:109776095-109776096
2012-10-07 18:47:48,203 - DEBUG - Taking top 8 variants by coverage in window 9:109776406-109776407
2012-10-07 18:47:48,566 - DEBUG - Taking top 8 variants by coverage in window 9:109781108-109781125
2012-10-07 18:47:48,639 - DEBUG - Taking top 8 variants by coverage in window 9:109781277-109781278
2012-10-07 18:47:50,483 - DEBUG - Taking top 8 variants by coverage in window 9:109801488-109801489
2012-10-07 18:47:50,715 - DEBUG - Taking top 8 variants by coverage in window 9:109804597-109804598
2012-10-07 18:47:51,004 - DEBUG - Taking top 8 variants by coverage in window 9:109807408-109807409
2012-10-07 18:47:51,033 - DEBUG - Taking top 8 variants by coverage in window 9:109807442-109807443
2012-10-07 18:47:51,165 - DEBUG - Taking top 8 variants by coverage in window 9:109809067-109809081
2012-10-07 18:47:51,361 - DEBUG - Taking top 8 variants by coverage in window 9:109810455-109810457
2012-10-07 18:47:51,706 - DEBUG - Taking top 8 variants by coverage in window 9:109811988-109811995
2012-10-07 18:47:52,537 - DEBUG - Taking top 8 variants by coverage in window 9:109818137-109818138
2012-10-07 18:47:52,558 - DEBUG - Taking top 8 variants by coverage in window 9:109818185-109818186
2012-10-07 18:47:52,666 - DEBUG - Taking top 8 variants by coverage in window 9:109819244-109819245
2012-10-07 18:47:53,061 - DEBUG - Taking top 8 variants by coverage in window 9:109821447-109821448
2012-10-07 18:47:53,146 - DEBUG - Taking top 8 variants by coverage in window 9:109822173-109822174
2012-10-07 18:47:53,698 - DEBUG - Taking top 8 variants by coverage in window 9:109825762-109825775
2012-10-07 18:47:53,807 - DEBUG - Taking top 8 variants by coverage in window 9:109825810-109825816
2012-10-07 18:47:54,138 - DEBUG - Taking top 8 variants by coverage in window 9:109825822-109825830
2012-10-07 18:47:56,734 - DEBUG - Taking top 8 variants by coverage in window 9:109843246-109843247
2012-10-07 18:47:57,406 - DEBUG - Taking top 8 variants by coverage in window 9:109852080-109852083
2012-10-07 18:47:57,442 - DEBUG - Taking top 8 variants by coverage in window 9:109852630-109852631
2012-10-07 18:47:58,586 - DEBUG - Taking top 8 variants by coverage in window 9:109870764-109870765
2012-10-07 18:47:59,066 - DEBUG - Taking top 8 variants by coverage in window 9:109878235-109878247
2012-10-07 18:47:59,293 - DEBUG - Taking top 8 variants by coverage in window 9:109882712-109882713
2012-10-07 18:47:59,484 - DEBUG - Taking top 8 variants by coverage in window 9:109886821-109886822
2012-10-07 18:47:59,785 - DEBUG - Taking top 8 variants by coverage in window 9:109892556-109892557
2012-10-07 18:48:00,907 - DEBUG - Taking top 8 variants by coverage in window 9:109909652-109909658
2012-10-07 18:48:01,145 - DEBUG - Taking top 8 variants by coverage in window 9:109912124-109912125
2012-10-07 18:48:01,163 - DEBUG - Taking top 8 variants by coverage in window 9:109912160-109912164
2012-10-07 18:48:01,276 - DEBUG - Taking top 8 variants by coverage in window 9:109912188-109912189
2012-10-07 18:48:01,311 - DEBUG - Taking top 8 variants by coverage in window 9:109912580-109912585
2012-10-07 18:48:01,464 - DEBUG - Taking top 8 variants by coverage in window 9:109914056-109914060
2012-10-07 18:48:02,191 - DEBUG - Taking top 8 variants by coverage in window 9:109930428-109930430
2012-10-07 18:48:02,469 - DEBUG - Taking top 8 variants by coverage in window 9:109935612-109935613
2012-10-07 18:48:03,388 - DEBUG - Taking top 8 variants by coverage in window 9:109967644-109967645
2012-10-07 18:48:03,571 - DEBUG - Taking top 8 variants by coverage in window 9:109970691-109970692
2012-10-07 18:48:03,780 - DEBUG - Taking top 8 variants by coverage in window 9:109978934-109978937
2012-10-07 18:48:03,903 - DEBUG - Taking top 8 variants by coverage in window 9:109979135-109979136
2012-10-07 18:48:04,071 - DEBUG - Taking top 8 variants by coverage in window 9:109980892-109980893
2012-10-07 18:48:04,079 - DEBUG - Taking top 8 variants by coverage in window 9:109980893-109980894
2012-10-07 18:48:04,104 - DEBUG - Taking top 8 variants by coverage in window 9:109980897-109980898
2012-10-07 18:48:05,865 - DEBUG - Read 101666 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 18:48:06,137 - DEBUG - Read 113193 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 18:48:06,418 - DEBUG - Read 127666 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 18:48:06,750 - DEBUG - Read 132930 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 18:48:07,050 - DEBUG - Read 121059 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 18:48:07,323 - DEBUG - Read 116066 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 18:48:07,608 - DEBUG - Read 123289 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 18:48:07,889 - DEBUG - Read 114238 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 18:48:08,148 - DEBUG - Read 108179 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 18:48:08,407 - DEBUG - Read 104454 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 18:48:08,691 - DEBUG - Read 119464 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 18:48:08,956 - DEBUG - Read 109986 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 18:48:09,224 - DEBUG - Read 110631 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 18:48:09,496 - DEBUG - Read 122541 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 18:48:09,791 - DEBUG - Read 130487 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 18:48:10,040 - DEBUG - Read 100350 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 18:48:10,318 - DEBUG - Read 125368 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 18:48:10,595 - DEBUG - Read 116930 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 18:48:10,858 - DEBUG - Read 108410 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 18:48:11,115 - DEBUG - Read 101636 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 18:48:11,222 - DEBUG - Detected 22571 variants in 101666 reads
2012-10-07 18:48:11,403 - DEBUG - Detected 34888 variants in 113193 reads
2012-10-07 18:48:11,673 - DEBUG - Detected 44784 variants in 127666 reads
2012-10-07 18:48:11,973 - DEBUG - Detected 53852 variants in 132930 reads
2012-10-07 18:48:12,287 - DEBUG - Detected 60669 variants in 121059 reads
2012-10-07 18:48:12,650 - DEBUG - Detected 67192 variants in 116066 reads
2012-10-07 18:48:13,061 - DEBUG - Detected 82389 variants in 123289 reads
2012-10-07 18:48:13,531 - DEBUG - Detected 89159 variants in 114238 reads
2012-10-07 18:48:14,051 - DEBUG - Detected 95291 variants in 108179 reads
2012-10-07 18:48:14,581 - DEBUG - Detected 100458 variants in 104454 reads
2012-10-07 18:48:15,150 - DEBUG - Detected 105789 variants in 119464 reads
2012-10-07 18:48:15,707 - DEBUG - Detected 110331 variants in 109986 reads
2012-10-07 18:48:16,322 - DEBUG - Detected 115058 variants in 110631 reads
2012-10-07 18:48:17,015 - DEBUG - Detected 120293 variants in 122541 reads
2012-10-07 18:48:17,681 - DEBUG - Detected 128625 variants in 130487 reads
2012-10-07 18:48:18,378 - DEBUG - Detected 132771 variants in 100350 reads
2012-10-07 18:48:19,137 - DEBUG - Detected 137115 variants in 125368 reads
2012-10-07 18:48:19,926 - DEBUG - Detected 141456 variants in 116930 reads
2012-10-07 18:48:20,709 - DEBUG - Detected 146108 variants in 108410 reads
2012-10-07 18:48:21,496 - DEBUG - Detected 150394 variants in 101636 reads
2012-10-07 18:48:23,397 - DEBUG - Taking top 8 variants by coverage in window 9:110014754-110014755
2012-10-07 18:48:23,864 - DEBUG - Taking top 8 variants by coverage in window 9:110026517-110026518
2012-10-07 18:48:23,878 - DEBUG - Taking top 8 variants by coverage in window 9:110026526-110026527
2012-10-07 18:48:24,223 - DEBUG - Taking top 8 variants by coverage in window 9:110029886-110029887
2012-10-07 18:48:24,501 - DEBUG - Taking top 8 variants by coverage in window 9:110037156-110037157
2012-10-07 18:48:24,999 - DEBUG - Taking top 8 variants by coverage in window 9:110044662-110044663
2012-10-07 18:48:25,053 - DEBUG - Taking top 8 variants by coverage in window 9:110045006-110045007
2012-10-07 18:48:25,137 - DEBUG - Taking top 8 variants by coverage in window 9:110045034-110045035
2012-10-07 18:48:25,264 - DEBUG - Taking top 8 variants by coverage in window 9:110045882-110045883
2012-10-07 18:48:25,479 - DEBUG - Taking top 8 variants by coverage in window 9:110048813-110048814
2012-10-07 18:48:25,513 - DEBUG - Taking top 8 variants by coverage in window 9:110048835-110048836
2012-10-07 18:48:25,664 - DEBUG - Taking top 8 variants by coverage in window 9:110050759-110050762
2012-10-07 18:48:25,678 - DEBUG - Taking top 8 variants by coverage in window 9:110050763-110050766
2012-10-07 18:48:26,243 - DEBUG - Taking top 8 variants by coverage in window 9:110056793-110056794
2012-10-07 18:48:27,186 - DEBUG - Taking top 8 variants by coverage in window 9:110071263-110071268
2012-10-07 18:48:27,681 - DEBUG - Taking top 8 variants by coverage in window 9:110075213-110075214
2012-10-07 18:48:27,794 - DEBUG - Taking top 8 variants by coverage in window 9:110076018-110076019
2012-10-07 18:48:28,432 - DEBUG - Taking top 8 variants by coverage in window 9:110089570-110089573
2012-10-07 18:48:28,448 - DEBUG - Taking top 8 variants by coverage in window 9:110089743-110089744
2012-10-07 18:48:28,474 - DEBUG - Taking top 8 variants by coverage in window 9:110089764-110089765
2012-10-07 18:48:28,792 - DEBUG - Taking top 8 variants by coverage in window 9:110097489-110097490
2012-10-07 18:48:29,319 - DEBUG - Taking top 8 variants by coverage in window 9:110107302-110107308
2012-10-07 18:48:29,344 - DEBUG - Taking top 8 variants by coverage in window 9:110107310-110107311
2012-10-07 18:48:29,682 - DEBUG - Taking top 8 variants by coverage in window 9:110111128-110111129
2012-10-07 18:48:29,854 - DEBUG - Taking top 8 variants by coverage in window 9:110115503-110115504
2012-10-07 18:48:29,925 - DEBUG - Taking top 8 variants by coverage in window 9:110117651-110117652
2012-10-07 18:48:30,891 - DEBUG - Taking top 8 variants by coverage in window 9:110138724-110138725
2012-10-07 18:48:30,904 - DEBUG - Taking top 8 variants by coverage in window 9:110138726-110138727
2012-10-07 18:48:31,002 - DEBUG - Taking top 8 variants by coverage in window 9:110138792-110138794
2012-10-07 18:48:31,057 - DEBUG - Taking top 8 variants by coverage in window 9:110138832-110138833
2012-10-07 18:48:31,425 - DEBUG - Taking top 8 variants by coverage in window 9:110146138-110146139
2012-10-07 18:48:32,039 - DEBUG - Taking top 8 variants by coverage in window 9:110159271-110159281
2012-10-07 18:48:32,062 - DEBUG - Taking top 8 variants by coverage in window 9:110159283-110159284
2012-10-07 18:48:32,723 - DEBUG - Taking top 8 variants by coverage in window 9:110169031-110169032
2012-10-07 18:48:33,590 - DEBUG - Taking top 8 variants by coverage in window 9:110176650-110176664
2012-10-07 18:48:33,663 - DEBUG - Taking top 8 variants by coverage in window 9:110176790-110176794
2012-10-07 18:48:34,299 - DEBUG - Taking top 8 variants by coverage in window 9:110180960-110180970
2012-10-07 18:48:34,534 - DEBUG - Taking top 8 variants by coverage in window 9:110181857-110181858
2012-10-07 18:48:34,838 - DEBUG - Taking top 8 variants by coverage in window 9:110183871-110183872
2012-10-07 18:48:35,517 - DEBUG - Taking top 8 variants by coverage in window 9:110189250-110189253
2012-10-07 18:48:36,373 - DEBUG - Taking top 8 variants by coverage in window 9:110199627-110199633
2012-10-07 18:48:37,262 - DEBUG - Taking top 8 variants by coverage in window 9:110206471-110206477
2012-10-07 18:48:37,491 - DEBUG - Taking top 8 variants by coverage in window 9:110208015-110208025
2012-10-07 18:48:37,904 - DEBUG - Taking top 8 variants by coverage in window 9:110211217-110211218
2012-10-07 18:48:37,947 - DEBUG - Taking top 8 variants by coverage in window 9:110211390-110211391
2012-10-07 18:48:38,026 - DEBUG - Taking top 8 variants by coverage in window 9:110211907-110211908
2012-10-07 18:48:38,999 - DEBUG - Taking top 8 variants by coverage in window 9:110220950-110220951
2012-10-07 18:48:39,008 - DEBUG - Taking top 8 variants by coverage in window 9:110220951-110220953
2012-10-07 18:48:39,066 - DEBUG - Taking top 8 variants by coverage in window 9:110220964-110220965
2012-10-07 18:48:39,284 - DEBUG - Taking top 8 variants by coverage in window 9:110223298-110223299
2012-10-07 18:48:39,602 - DEBUG - Taking top 8 variants by coverage in window 9:110226096-110226099
2012-10-07 18:48:39,633 - DEBUG - Taking top 8 variants by coverage in window 9:110226118-110226122
2012-10-07 18:48:40,032 - DEBUG - Taking top 8 variants by coverage in window 9:110229095-110229096
2012-10-07 18:48:40,389 - DEBUG - Taking top 8 variants by coverage in window 9:110232633-110232634
2012-10-07 18:48:42,236 - DEBUG - Taking top 8 variants by coverage in window 9:110258594-110258595
2012-10-07 18:48:43,009 - DEBUG - Taking top 8 variants by coverage in window 9:110269450-110269451
2012-10-07 18:48:43,263 - DEBUG - Taking top 8 variants by coverage in window 9:110271265-110271266
2012-10-07 18:48:43,282 - DEBUG - Taking top 8 variants by coverage in window 9:110271269-110271270
2012-10-07 18:48:43,499 - DEBUG - Taking top 8 variants by coverage in window 9:110272359-110272360
2012-10-07 18:48:44,495 - DEBUG - Taking top 8 variants by coverage in window 9:110297132-110297133
2012-10-07 18:48:44,571 - DEBUG - Taking top 8 variants by coverage in window 9:110297669-110297674
2012-10-07 18:48:45,720 - DEBUG - Taking top 8 variants by coverage in window 9:110313449-110313454
2012-10-07 18:48:45,922 - DEBUG - Taking top 8 variants by coverage in window 9:110314682-110314683
2012-10-07 18:48:46,440 - DEBUG - Taking top 8 variants by coverage in window 9:110316826-110316827
2012-10-07 18:48:47,096 - DEBUG - Taking top 8 variants by coverage in window 9:110321885-110321886
2012-10-07 18:48:47,764 - DEBUG - Taking top 8 variants by coverage in window 9:110333769-110333770
2012-10-07 18:48:48,318 - DEBUG - Taking top 8 variants by coverage in window 9:110341735-110341748
2012-10-07 18:48:48,706 - DEBUG - Taking top 8 variants by coverage in window 9:110344007-110344008
2012-10-07 18:48:50,387 - DEBUG - Taking top 8 variants by coverage in window 9:110351587-110351588
2012-10-07 18:48:50,473 - DEBUG - Taking top 8 variants by coverage in window 9:110351672-110351680
2012-10-07 18:48:50,575 - DEBUG - Taking top 8 variants by coverage in window 9:110351683-110351684
2012-10-07 18:48:50,646 - DEBUG - Taking top 8 variants by coverage in window 9:110352550-110352551
2012-10-07 18:48:51,009 - DEBUG - Taking top 8 variants by coverage in window 9:110357586-110357587
2012-10-07 18:48:51,221 - DEBUG - Taking top 8 variants by coverage in window 9:110358735-110358736
2012-10-07 18:48:51,449 - DEBUG - Taking top 8 variants by coverage in window 9:110360435-110360440
2012-10-07 18:48:51,678 - DEBUG - Taking top 8 variants by coverage in window 9:110361174-110361177
2012-10-07 18:48:51,722 - DEBUG - Taking top 8 variants by coverage in window 9:110361178-110361179
2012-10-07 18:48:52,029 - DEBUG - Taking top 8 variants by coverage in window 9:110363992-110363995
2012-10-07 18:48:52,218 - DEBUG - Taking top 8 variants by coverage in window 9:110365685-110365686
2012-10-07 18:48:53,259 - DEBUG - Taking top 8 variants by coverage in window 9:110384522-110384523
2012-10-07 18:48:53,500 - DEBUG - Taking top 8 variants by coverage in window 9:110385892-110385893
2012-10-07 18:48:53,537 - DEBUG - Taking top 8 variants by coverage in window 9:110386873-110386874
2012-10-07 18:48:53,607 - DEBUG - Taking top 8 variants by coverage in window 9:110387058-110387063
2012-10-07 18:48:53,701 - DEBUG - Taking top 8 variants by coverage in window 9:110387085-110387089
2012-10-07 18:48:53,949 - DEBUG - Taking top 8 variants by coverage in window 9:110390296-110390297
2012-10-07 18:48:53,994 - DEBUG - Taking top 8 variants by coverage in window 9:110392046-110392047
2012-10-07 18:48:54,470 - DEBUG - Taking top 8 variants by coverage in window 9:110401803-110401804
2012-10-07 18:48:54,744 - DEBUG - Taking top 8 variants by coverage in window 9:110405551-110405552
2012-10-07 18:48:54,758 - DEBUG - Taking top 8 variants by coverage in window 9:110405567-110405569
2012-10-07 18:48:54,939 - DEBUG - Taking top 8 variants by coverage in window 9:110408065-110408069
2012-10-07 18:48:55,494 - DEBUG - Taking top 8 variants by coverage in window 9:110417130-110417131
2012-10-07 18:48:55,771 - DEBUG - Taking top 8 variants by coverage in window 9:110422779-110422780
2012-10-07 18:48:56,784 - DEBUG - Taking top 8 variants by coverage in window 9:110454684-110454685
2012-10-07 18:48:56,807 - DEBUG - Taking top 8 variants by coverage in window 9:110454689-110454690
2012-10-07 18:48:56,834 - DEBUG - Taking top 8 variants by coverage in window 9:110454722-110454723
2012-10-07 18:48:56,946 - DEBUG - Taking top 8 variants by coverage in window 9:110455149-110455155
2012-10-07 18:48:57,165 - DEBUG - Taking top 8 variants by coverage in window 9:110458600-110458601
2012-10-07 18:48:57,407 - DEBUG - Taking top 8 variants by coverage in window 9:110461690-110461691
2012-10-07 18:48:57,470 - DEBUG - Taking top 8 variants by coverage in window 9:110462642-110462645
2012-10-07 18:48:57,710 - DEBUG - Taking top 8 variants by coverage in window 9:110466618-110466619
2012-10-07 18:48:57,821 - DEBUG - Taking top 8 variants by coverage in window 9:110467869-110467870
2012-10-07 18:48:58,173 - DEBUG - Taking top 8 variants by coverage in window 9:110472737-110472738
2012-10-07 18:48:58,230 - DEBUG - Taking top 8 variants by coverage in window 9:110473768-110473776
2012-10-07 18:48:58,560 - DEBUG - Taking top 8 variants by coverage in window 9:110478818-110478821
2012-10-07 18:48:58,793 - DEBUG - Taking top 8 variants by coverage in window 9:110484064-110484065
2012-10-07 18:48:58,866 - DEBUG - Taking top 8 variants by coverage in window 9:110484600-110484601
2012-10-07 18:48:58,977 - DEBUG - Taking top 8 variants by coverage in window 9:110486421-110486423
2012-10-07 18:48:59,278 - DEBUG - Taking top 8 variants by coverage in window 9:110489281-110489282
2012-10-07 18:49:00,189 - DEBUG - Taking top 8 variants by coverage in window 9:110512157-110512158
2012-10-07 18:49:01,159 - DEBUG - Taking top 8 variants by coverage in window 9:110533702-110533705
2012-10-07 18:49:01,299 - DEBUG - Taking top 8 variants by coverage in window 9:110533706-110533707
2012-10-07 18:49:02,724 - DEBUG - Taking top 8 variants by coverage in window 9:110561110-110561116
2012-10-07 18:49:03,041 - DEBUG - Taking top 8 variants by coverage in window 9:110567211-110567212
2012-10-07 18:49:03,203 - DEBUG - Taking top 8 variants by coverage in window 9:110569283-110569284
2012-10-07 18:49:03,326 - DEBUG - Taking top 8 variants by coverage in window 9:110569537-110569539
2012-10-07 18:49:03,373 - DEBUG - Taking top 8 variants by coverage in window 9:110569540-110569541
2012-10-07 18:49:03,536 - DEBUG - Taking top 8 variants by coverage in window 9:110571868-110571869
2012-10-07 18:49:03,570 - DEBUG - Taking top 8 variants by coverage in window 9:110571892-110571893
2012-10-07 18:49:04,436 - DEBUG - Taking top 8 variants by coverage in window 9:110579889-110579891
2012-10-07 18:49:05,067 - DEBUG - Taking top 8 variants by coverage in window 9:110586496-110586499
2012-10-07 18:49:05,887 - DEBUG - Taking top 8 variants by coverage in window 9:110594137-110594138
2012-10-07 18:49:06,281 - DEBUG - Taking top 8 variants by coverage in window 9:110600861-110600862
2012-10-07 18:49:06,290 - DEBUG - Taking top 8 variants by coverage in window 9:110600882-110600883
2012-10-07 18:49:06,336 - DEBUG - Taking top 8 variants by coverage in window 9:110601513-110601520
2012-10-07 18:49:08,029 - DEBUG - Taking top 8 variants by coverage in window 9:110619235-110619236
2012-10-07 18:49:08,155 - DEBUG - Taking top 8 variants by coverage in window 9:110620807-110620821
2012-10-07 18:49:09,258 - DEBUG - Taking top 8 variants by coverage in window 9:110637833-110637836
2012-10-07 18:49:10,165 - DEBUG - Taking top 8 variants by coverage in window 9:110654055-110654056
2012-10-07 18:49:10,177 - DEBUG - Taking top 8 variants by coverage in window 9:110654060-110654061
2012-10-07 18:49:10,530 - DEBUG - Taking top 8 variants by coverage in window 9:110657046-110657047
2012-10-07 18:49:10,913 - DEBUG - Taking top 8 variants by coverage in window 9:110657751-110657761
2012-10-07 18:49:10,979 - DEBUG - Taking top 8 variants by coverage in window 9:110658376-110658377
2012-10-07 18:49:11,285 - DEBUG - Taking top 8 variants by coverage in window 9:110662458-110662459
2012-10-07 18:49:11,654 - DEBUG - Taking top 8 variants by coverage in window 9:110671044-110671045
2012-10-07 18:49:11,770 - DEBUG - Taking top 8 variants by coverage in window 9:110673152-110673153
2012-10-07 18:49:12,893 - DEBUG - Taking top 8 variants by coverage in window 9:110692292-110692293
2012-10-07 18:49:13,240 - DEBUG - Taking top 8 variants by coverage in window 9:110694633-110694634
2012-10-07 18:49:13,320 - DEBUG - Taking top 8 variants by coverage in window 9:110694784-110694785
2012-10-07 18:49:13,534 - DEBUG - Taking top 8 variants by coverage in window 9:110695931-110695936
2012-10-07 18:49:13,931 - DEBUG - Taking top 8 variants by coverage in window 9:110697329-110697330
2012-10-07 18:49:14,259 - DEBUG - Taking top 8 variants by coverage in window 9:110701116-110701117
2012-10-07 18:49:14,490 - DEBUG - Taking top 8 variants by coverage in window 9:110706119-110706120
2012-10-07 18:49:14,791 - DEBUG - Taking top 8 variants by coverage in window 9:110709181-110709182
2012-10-07 18:49:15,341 - DEBUG - Taking top 8 variants by coverage in window 9:110714212-110714224
2012-10-07 18:49:15,410 - DEBUG - Taking top 8 variants by coverage in window 9:110714248-110714249
2012-10-07 18:49:15,426 - DEBUG - Taking top 8 variants by coverage in window 9:110714252-110714253
2012-10-07 18:49:15,441 - DEBUG - Taking top 8 variants by coverage in window 9:110714256-110714277
2012-10-07 18:49:16,320 - DEBUG - Taking top 8 variants by coverage in window 9:110723749-110723751
2012-10-07 18:49:17,901 - DEBUG - Taking top 8 variants by coverage in window 9:110752943-110752944
2012-10-07 18:49:18,031 - DEBUG - Taking top 8 variants by coverage in window 9:110753124-110753125
2012-10-07 18:49:18,060 - DEBUG - Taking top 8 variants by coverage in window 9:110753126-110753127
2012-10-07 18:49:18,096 - DEBUG - Taking top 8 variants by coverage in window 9:110753157-110753158
2012-10-07 18:49:18,114 - DEBUG - Taking top 8 variants by coverage in window 9:110753159-110753164
2012-10-07 18:49:18,259 - DEBUG - Taking top 8 variants by coverage in window 9:110753243-110753244
2012-10-07 18:49:18,701 - DEBUG - Taking top 8 variants by coverage in window 9:110759931-110759944
2012-10-07 18:49:19,058 - DEBUG - Taking top 8 variants by coverage in window 9:110767768-110767769
2012-10-07 18:49:19,400 - DEBUG - Taking top 8 variants by coverage in window 9:110771118-110771120
2012-10-07 18:49:19,858 - DEBUG - Taking top 8 variants by coverage in window 9:110779791-110779792
2012-10-07 18:49:19,917 - DEBUG - Taking top 8 variants by coverage in window 9:110781443-110781444
2012-10-07 18:49:20,440 - DEBUG - Taking top 8 variants by coverage in window 9:110789651-110789653
2012-10-07 18:49:20,644 - DEBUG - Taking top 8 variants by coverage in window 9:110791810-110791811
2012-10-07 18:49:20,676 - DEBUG - Taking top 8 variants by coverage in window 9:110791842-110791843
2012-10-07 18:49:20,912 - DEBUG - Taking top 8 variants by coverage in window 9:110795444-110795445
2012-10-07 18:49:21,082 - DEBUG - Taking top 8 variants by coverage in window 9:110795669-110795670
2012-10-07 18:49:21,266 - DEBUG - Taking top 8 variants by coverage in window 9:110798152-110798153
2012-10-07 18:49:21,284 - DEBUG - Taking top 8 variants by coverage in window 9:110798153-110798154
2012-10-07 18:49:21,335 - DEBUG - Taking top 8 variants by coverage in window 9:110798498-110798499
2012-10-07 18:49:21,344 - DEBUG - Taking top 8 variants by coverage in window 9:110798500-110798502
2012-10-07 18:49:21,368 - DEBUG - Taking top 8 variants by coverage in window 9:110798517-110798522
2012-10-07 18:49:21,397 - DEBUG - Taking top 8 variants by coverage in window 9:110798673-110798674
2012-10-07 18:49:21,910 - DEBUG - Taking top 8 variants by coverage in window 9:110802918-110802920
2012-10-07 18:49:22,251 - DEBUG - Taking top 8 variants by coverage in window 9:110805269-110805278
2012-10-07 18:49:22,346 - DEBUG - Taking top 8 variants by coverage in window 9:110805719-110805720
2012-10-07 18:49:23,458 - DEBUG - Taking top 8 variants by coverage in window 9:110812948-110812954
2012-10-07 18:49:24,054 - DEBUG - Taking top 8 variants by coverage in window 9:110818688-110818689
2012-10-07 18:49:24,549 - DEBUG - Taking top 8 variants by coverage in window 9:110824753-110824758
2012-10-07 18:49:24,625 - DEBUG - Taking top 8 variants by coverage in window 9:110824767-110824770
2012-10-07 18:49:25,060 - DEBUG - Taking top 8 variants by coverage in window 9:110824949-110824950
2012-10-07 18:49:25,306 - DEBUG - Taking top 8 variants by coverage in window 9:110826349-110826350
2012-10-07 18:49:25,749 - DEBUG - Taking top 8 variants by coverage in window 9:110831895-110831910
2012-10-07 18:49:26,558 - DEBUG - Taking top 8 variants by coverage in window 9:110841555-110841556
2012-10-07 18:49:26,737 - DEBUG - Taking top 8 variants by coverage in window 9:110842748-110842749
2012-10-07 18:49:26,979 - DEBUG - Taking top 8 variants by coverage in window 9:110845393-110845402
2012-10-07 18:49:27,012 - DEBUG - Taking top 8 variants by coverage in window 9:110845438-110845439
2012-10-07 18:49:27,492 - DEBUG - Taking top 8 variants by coverage in window 9:110852236-110852237
2012-10-07 18:49:28,377 - DEBUG - Taking top 8 variants by coverage in window 9:110858783-110858788
2012-10-07 18:49:28,506 - DEBUG - Taking top 8 variants by coverage in window 9:110859497-110859514
2012-10-07 18:49:28,819 - DEBUG - Taking top 8 variants by coverage in window 9:110860069-110860070
2012-10-07 18:49:28,901 - DEBUG - Taking top 8 variants by coverage in window 9:110860093-110860094
2012-10-07 18:49:29,030 - DEBUG - Taking top 8 variants by coverage in window 9:110860121-110860123
2012-10-07 18:49:29,153 - DEBUG - Taking top 8 variants by coverage in window 9:110860127-110860129
2012-10-07 18:49:29,346 - DEBUG - Taking top 8 variants by coverage in window 9:110860144-110860145
2012-10-07 18:49:29,562 - DEBUG - Taking top 8 variants by coverage in window 9:110860188-110860190
2012-10-07 18:49:29,699 - DEBUG - Taking top 8 variants by coverage in window 9:110860210-110860211
2012-10-07 18:49:29,766 - DEBUG - Taking top 8 variants by coverage in window 9:110860222-110860223
2012-10-07 18:49:30,004 - DEBUG - Taking top 8 variants by coverage in window 9:110861099-110861100
2012-10-07 18:49:30,013 - DEBUG - Taking top 8 variants by coverage in window 9:110861103-110861104
2012-10-07 18:49:30,024 - DEBUG - Taking top 8 variants by coverage in window 9:110861116-110861117
2012-10-07 18:49:30,201 - DEBUG - Taking top 8 variants by coverage in window 9:110862062-110862064
2012-10-07 18:49:30,232 - DEBUG - Taking top 8 variants by coverage in window 9:110862065-110862070
2012-10-07 18:49:31,582 - DEBUG - Taking top 8 variants by coverage in window 9:110871704-110871705
2012-10-07 18:49:31,616 - DEBUG - Taking top 8 variants by coverage in window 9:110871742-110871743
2012-10-07 18:49:31,838 - DEBUG - Taking top 8 variants by coverage in window 9:110878369-110878370
2012-10-07 18:49:31,846 - DEBUG - Taking top 8 variants by coverage in window 9:110878377-110878378
2012-10-07 18:49:31,919 - DEBUG - Taking top 8 variants by coverage in window 9:110878586-110878587
2012-10-07 18:49:32,805 - DEBUG - Taking top 8 variants by coverage in window 9:110886073-110886074
2012-10-07 18:49:33,530 - DEBUG - Taking top 8 variants by coverage in window 9:110893844-110893845
2012-10-07 18:49:33,543 - DEBUG - Taking top 8 variants by coverage in window 9:110894041-110894042
2012-10-07 18:49:34,013 - DEBUG - Taking top 8 variants by coverage in window 9:110898938-110898939
2012-10-07 18:49:34,759 - DEBUG - Taking top 8 variants by coverage in window 9:110906459-110906460
2012-10-07 18:49:34,776 - DEBUG - Taking top 8 variants by coverage in window 9:110906461-110906462
2012-10-07 18:49:35,249 - DEBUG - Taking top 8 variants by coverage in window 9:110916342-110916343
2012-10-07 18:49:35,783 - DEBUG - Taking top 8 variants by coverage in window 9:110924087-110924088
2012-10-07 18:49:36,980 - DEBUG - Taking top 8 variants by coverage in window 9:110939479-110939484
2012-10-07 18:49:37,180 - DEBUG - Taking top 8 variants by coverage in window 9:110940611-110940612
2012-10-07 18:49:38,661 - DEBUG - Taking top 8 variants by coverage in window 9:110961838-110961839
2012-10-07 18:49:39,262 - DEBUG - Taking top 8 variants by coverage in window 9:110971199-110971200
2012-10-07 18:49:39,278 - DEBUG - Taking top 8 variants by coverage in window 9:110971238-110971239
2012-10-07 18:49:39,434 - DEBUG - Taking top 8 variants by coverage in window 9:110973444-110973445
2012-10-07 18:49:39,668 - DEBUG - Taking top 8 variants by coverage in window 9:110974917-110974920
2012-10-07 18:49:40,470 - DEBUG - Taking top 8 variants by coverage in window 9:110976503-110976507
2012-10-07 18:49:40,715 - DEBUG - Taking top 8 variants by coverage in window 9:110978369-110978370
2012-10-07 18:49:40,839 - DEBUG - Taking top 8 variants by coverage in window 9:110979896-110979897
2012-10-07 18:49:40,952 - DEBUG - Taking top 8 variants by coverage in window 9:110981307-110981308
2012-10-07 18:49:40,963 - DEBUG - Taking top 8 variants by coverage in window 9:110981308-110981309
2012-10-07 18:49:41,105 - DEBUG - Taking top 8 variants by coverage in window 9:110982346-110982347
2012-10-07 18:49:41,114 - DEBUG - Taking top 8 variants by coverage in window 9:110982347-110982348
2012-10-07 18:49:41,226 - DEBUG - Taking top 8 variants by coverage in window 9:110983304-110983305
2012-10-07 18:49:41,421 - DEBUG - Taking top 8 variants by coverage in window 9:110984901-110984902
2012-10-07 18:49:41,544 - DEBUG - Taking top 8 variants by coverage in window 9:110985779-110985780
2012-10-07 18:49:41,583 - DEBUG - Taking top 8 variants by coverage in window 9:110985836-110985837
2012-10-07 18:49:41,929 - DEBUG - Taking top 8 variants by coverage in window 9:110988130-110988133
2012-10-07 18:49:42,511 - DEBUG - Taking top 8 variants by coverage in window 9:110996572-110996574
2012-10-07 18:49:42,612 - DEBUG - Taking top 8 variants by coverage in window 9:110998063-110998064
2012-10-07 18:49:42,808 - DEBUG - Taking top 8 variants by coverage in window 9:110998131-110998132
2012-10-07 18:49:43,084 - DEBUG - Taking top 8 variants by coverage in window 9:110999138-110999139
2012-10-07 18:49:44,149 - DEBUG - Read 95112 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 18:49:44,402 - DEBUG - Read 106719 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 18:49:44,671 - DEBUG - Read 123088 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 18:49:45,002 - DEBUG - Read 123853 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 18:49:45,289 - DEBUG - Read 116280 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 18:49:45,548 - DEBUG - Read 112664 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 18:49:45,817 - DEBUG - Read 118311 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 18:49:46,081 - DEBUG - Read 107014 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 18:49:46,327 - DEBUG - Read 103075 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 18:49:46,580 - DEBUG - Read 103732 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 18:49:46,849 - DEBUG - Read 114440 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 18:49:47,092 - DEBUG - Read 104639 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 18:49:47,344 - DEBUG - Read 105739 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 18:49:47,598 - DEBUG - Read 114865 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 18:49:47,881 - DEBUG - Read 125496 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 18:49:48,123 - DEBUG - Read 96883 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 18:49:48,387 - DEBUG - Read 119945 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 18:49:48,655 - DEBUG - Read 114008 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 18:49:48,887 - DEBUG - Read 98976 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 18:49:49,134 - DEBUG - Read 98895 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 18:49:49,254 - DEBUG - Detected 25916 variants in 95112 reads
2012-10-07 18:49:49,447 - DEBUG - Detected 37185 variants in 106719 reads
2012-10-07 18:49:49,704 - DEBUG - Detected 46776 variants in 123088 reads
2012-10-07 18:49:50,001 - DEBUG - Detected 55783 variants in 123853 reads
2012-10-07 18:49:50,334 - DEBUG - Detected 63591 variants in 116280 reads
2012-10-07 18:49:50,700 - DEBUG - Detected 70897 variants in 112664 reads
2012-10-07 18:49:51,143 - DEBUG - Detected 85532 variants in 118311 reads
2012-10-07 18:49:51,616 - DEBUG - Detected 91532 variants in 107014 reads
2012-10-07 18:49:52,112 - DEBUG - Detected 97541 variants in 103075 reads
2012-10-07 18:49:52,638 - DEBUG - Detected 102739 variants in 103732 reads
2012-10-07 18:49:53,195 - DEBUG - Detected 107468 variants in 114440 reads
2012-10-07 18:49:53,823 - DEBUG - Detected 112135 variants in 104639 reads
2012-10-07 18:49:54,420 - DEBUG - Detected 116502 variants in 105739 reads
2012-10-07 18:49:55,051 - DEBUG - Detected 121256 variants in 114865 reads
2012-10-07 18:49:55,721 - DEBUG - Detected 129520 variants in 125496 reads
2012-10-07 18:49:56,396 - DEBUG - Detected 133969 variants in 96883 reads
2012-10-07 18:49:57,185 - DEBUG - Detected 138121 variants in 119945 reads
2012-10-07 18:49:57,919 - DEBUG - Detected 142293 variants in 114008 reads
2012-10-07 18:49:58,652 - DEBUG - Detected 146949 variants in 98976 reads
2012-10-07 18:49:59,413 - DEBUG - Detected 151588 variants in 98895 reads
2012-10-07 18:50:01,060 - DEBUG - Taking top 8 variants by coverage in window 9:111005759-111005760
2012-10-07 18:50:01,098 - DEBUG - Taking top 8 variants by coverage in window 9:111005778-111005779
2012-10-07 18:50:01,978 - DEBUG - Taking top 8 variants by coverage in window 9:111025507-111025508
2012-10-07 18:50:02,184 - DEBUG - Taking top 8 variants by coverage in window 9:111028353-111028356
2012-10-07 18:50:02,219 - DEBUG - Taking top 8 variants by coverage in window 9:111028369-111028370
2012-10-07 18:50:02,227 - DEBUG - Taking top 8 variants by coverage in window 9:111028371-111028373
2012-10-07 18:50:02,900 - DEBUG - Taking top 8 variants by coverage in window 9:111046474-111046475
2012-10-07 18:50:03,653 - DEBUG - Taking top 8 variants by coverage in window 9:111062450-111062451
2012-10-07 18:50:03,847 - DEBUG - Taking top 8 variants by coverage in window 9:111071414-111071415
2012-10-07 18:50:04,020 - DEBUG - Taking top 8 variants by coverage in window 9:111081485-111081486
2012-10-07 18:50:04,170 - DEBUG - Taking top 8 variants by coverage in window 9:111087249-111087264
2012-10-07 18:50:04,181 - DEBUG - Taking top 8 variants by coverage in window 9:111087275-111087276
2012-10-07 18:50:04,319 - DEBUG - Taking top 8 variants by coverage in window 9:111089665-111089666
2012-10-07 18:50:04,762 - DEBUG - Taking top 8 variants by coverage in window 9:111094330-111094331
2012-10-07 18:50:04,809 - DEBUG - Taking top 8 variants by coverage in window 9:111094352-111094353
2012-10-07 18:50:04,909 - DEBUG - Taking top 8 variants by coverage in window 9:111096362-111096363
2012-10-07 18:50:04,920 - DEBUG - Taking top 8 variants by coverage in window 9:111096365-111096374
2012-10-07 18:50:05,236 - DEBUG - Taking top 8 variants by coverage in window 9:111110692-111110693
2012-10-07 18:50:05,420 - DEBUG - Taking top 8 variants by coverage in window 9:111112575-111112586
2012-10-07 18:50:06,411 - DEBUG - Taking top 8 variants by coverage in window 9:111139187-111139188
2012-10-07 18:50:06,511 - DEBUG - Taking top 8 variants by coverage in window 9:111140822-111140823
2012-10-07 18:50:06,707 - DEBUG - Taking top 8 variants by coverage in window 9:111144933-111144934
2012-10-07 18:50:06,993 - DEBUG - Taking top 8 variants by coverage in window 9:111148496-111148506
2012-10-07 18:50:07,135 - DEBUG - Taking top 8 variants by coverage in window 9:111148552-111148572
2012-10-07 18:50:07,417 - DEBUG - Taking top 8 variants by coverage in window 9:111150187-111150191
2012-10-07 18:50:07,518 - DEBUG - Taking top 8 variants by coverage in window 9:111150197-111150198
2012-10-07 18:50:08,122 - DEBUG - Taking top 8 variants by coverage in window 9:111161120-111161121
2012-10-07 18:50:08,473 - DEBUG - Taking top 8 variants by coverage in window 9:111167899-111167902
2012-10-07 18:50:08,520 - DEBUG - Taking top 8 variants by coverage in window 9:111168458-111168459
2012-10-07 18:50:09,142 - DEBUG - Taking top 8 variants by coverage in window 9:111184188-111184192
2012-10-07 18:50:09,507 - DEBUG - Taking top 8 variants by coverage in window 9:111185436-111185437
2012-10-07 18:50:09,775 - DEBUG - Taking top 8 variants by coverage in window 9:111187320-111187321
2012-10-07 18:50:09,986 - DEBUG - Taking top 8 variants by coverage in window 9:111190040-111190052
2012-10-07 18:50:10,017 - DEBUG - Taking top 8 variants by coverage in window 9:111190082-111190083
2012-10-07 18:50:10,327 - DEBUG - Taking top 8 variants by coverage in window 9:111195100-111195101
2012-10-07 18:50:10,714 - DEBUG - Taking top 8 variants by coverage in window 9:111201601-111201620
2012-10-07 18:50:10,754 - DEBUG - Taking top 8 variants by coverage in window 9:111201662-111201663
2012-10-07 18:50:11,034 - DEBUG - Taking top 8 variants by coverage in window 9:111204415-111204418
2012-10-07 18:50:11,104 - DEBUG - Taking top 8 variants by coverage in window 9:111205031-111205032
2012-10-07 18:50:11,273 - DEBUG - Taking top 8 variants by coverage in window 9:111207891-111207892
2012-10-07 18:50:11,305 - DEBUG - Taking top 8 variants by coverage in window 9:111207935-111207936
2012-10-07 18:50:11,588 - DEBUG - Taking top 8 variants by coverage in window 9:111211463-111211464
2012-10-07 18:50:12,242 - DEBUG - Taking top 8 variants by coverage in window 9:111218542-111218543
2012-10-07 18:50:12,510 - DEBUG - Taking top 8 variants by coverage in window 9:111222039-111222040
2012-10-07 18:50:12,601 - DEBUG - Taking top 8 variants by coverage in window 9:111222668-111222670
2012-10-07 18:50:12,653 - DEBUG - Taking top 8 variants by coverage in window 9:111222691-111222692
2012-10-07 18:50:12,742 - DEBUG - Taking top 8 variants by coverage in window 9:111224084-111224088
2012-10-07 18:50:12,941 - DEBUG - Taking top 8 variants by coverage in window 9:111227721-111227722
2012-10-07 18:50:12,957 - DEBUG - Taking top 8 variants by coverage in window 9:111227757-111227758
2012-10-07 18:50:13,273 - DEBUG - Taking top 8 variants by coverage in window 9:111231854-111231855
2012-10-07 18:50:13,564 - DEBUG - Taking top 8 variants by coverage in window 9:111235621-111235629
2012-10-07 18:50:14,455 - DEBUG - Taking top 8 variants by coverage in window 9:111245389-111245390
2012-10-07 18:50:14,964 - DEBUG - Taking top 8 variants by coverage in window 9:111254166-111254167
2012-10-07 18:50:15,235 - DEBUG - Taking top 8 variants by coverage in window 9:111258557-111258558
2012-10-07 18:50:15,289 - DEBUG - Taking top 8 variants by coverage in window 9:111258651-111258652
2012-10-07 18:50:15,506 - DEBUG - Taking top 8 variants by coverage in window 9:111260283-111260284
2012-10-07 18:50:15,586 - DEBUG - Taking top 8 variants by coverage in window 9:111261332-111261333
2012-10-07 18:50:15,965 - DEBUG - Taking top 8 variants by coverage in window 9:111266794-111266795
2012-10-07 18:50:16,348 - DEBUG - Taking top 8 variants by coverage in window 9:111274610-111274611
2012-10-07 18:50:17,475 - DEBUG - Taking top 8 variants by coverage in window 9:111301690-111301691
2012-10-07 18:50:17,554 - DEBUG - Taking top 8 variants by coverage in window 9:111301838-111301839
2012-10-07 18:50:17,623 - DEBUG - Taking top 8 variants by coverage in window 9:111301874-111301875
2012-10-07 18:50:17,684 - DEBUG - Taking top 8 variants by coverage in window 9:111302122-111302124
2012-10-07 18:50:17,848 - DEBUG - Taking top 8 variants by coverage in window 9:111303174-111303175
2012-10-07 18:50:18,037 - DEBUG - Taking top 8 variants by coverage in window 9:111305383-111305384
2012-10-07 18:50:18,062 - DEBUG - Taking top 8 variants by coverage in window 9:111305405-111305406
2012-10-07 18:50:18,400 - DEBUG - Taking top 8 variants by coverage in window 9:111308945-111308946
2012-10-07 18:50:18,777 - DEBUG - Taking top 8 variants by coverage in window 9:111313086-111313087
2012-10-07 18:50:18,817 - DEBUG - Taking top 8 variants by coverage in window 9:111313121-111313122
2012-10-07 18:50:19,110 - DEBUG - Taking top 8 variants by coverage in window 9:111314758-111314759
2012-10-07 18:50:19,810 - DEBUG - Taking top 8 variants by coverage in window 9:111321649-111321652
2012-10-07 18:50:20,027 - DEBUG - Taking top 8 variants by coverage in window 9:111323053-111323054
2012-10-07 18:50:20,570 - DEBUG - Taking top 8 variants by coverage in window 9:111330050-111330051
2012-10-07 18:50:20,854 - DEBUG - Taking top 8 variants by coverage in window 9:111333454-111333455
2012-10-07 18:50:21,110 - DEBUG - Taking top 8 variants by coverage in window 9:111336316-111336317
2012-10-07 18:50:21,266 - DEBUG - Taking top 8 variants by coverage in window 9:111337640-111337641
2012-10-07 18:50:21,511 - DEBUG - Taking top 8 variants by coverage in window 9:111341939-111341940
2012-10-07 18:50:22,036 - DEBUG - Taking top 8 variants by coverage in window 9:111349876-111349877
2012-10-07 18:50:22,122 - DEBUG - Taking top 8 variants by coverage in window 9:111350143-111350149
2012-10-07 18:50:22,252 - DEBUG - Taking top 8 variants by coverage in window 9:111351346-111351347
2012-10-07 18:50:22,456 - DEBUG - Taking top 8 variants by coverage in window 9:111353185-111353186
2012-10-07 18:50:22,703 - DEBUG - Taking top 8 variants by coverage in window 9:111355300-111355301
2012-10-07 18:50:22,928 - DEBUG - Taking top 8 variants by coverage in window 9:111357227-111357228
2012-10-07 18:50:23,451 - DEBUG - Taking top 8 variants by coverage in window 9:111361872-111361873
2012-10-07 18:50:23,514 - DEBUG - Taking top 8 variants by coverage in window 9:111361895-111361896
2012-10-07 18:50:24,206 - DEBUG - Taking top 8 variants by coverage in window 9:111368844-111368845
2012-10-07 18:50:24,568 - DEBUG - Taking top 8 variants by coverage in window 9:111373921-111373922
2012-10-07 18:50:24,979 - DEBUG - Taking top 8 variants by coverage in window 9:111377509-111377510
2012-10-07 18:50:25,556 - DEBUG - Taking top 8 variants by coverage in window 9:111382940-111382942
2012-10-07 18:50:25,592 - DEBUG - Taking top 8 variants by coverage in window 9:111382964-111382965
2012-10-07 18:50:25,631 - DEBUG - Taking top 8 variants by coverage in window 9:111383116-111383117
2012-10-07 18:50:25,765 - DEBUG - Taking top 8 variants by coverage in window 9:111383197-111383198
2012-10-07 18:50:25,958 - DEBUG - Taking top 8 variants by coverage in window 9:111384917-111384918
2012-10-07 18:50:25,973 - DEBUG - Taking top 8 variants by coverage in window 9:111384937-111384938
2012-10-07 18:50:26,055 - DEBUG - Taking top 8 variants by coverage in window 9:111385509-111385510
2012-10-07 18:50:26,339 - DEBUG - Taking top 8 variants by coverage in window 9:111388026-111388027
2012-10-07 18:50:26,789 - DEBUG - Taking top 8 variants by coverage in window 9:111390229-111390230
2012-10-07 18:50:26,811 - DEBUG - Taking top 8 variants by coverage in window 9:111390234-111390235
2012-10-07 18:50:26,939 - DEBUG - Taking top 8 variants by coverage in window 9:111390701-111390702
2012-10-07 18:50:27,748 - DEBUG - Taking top 8 variants by coverage in window 9:111396705-111396706
2012-10-07 18:50:28,074 - DEBUG - Taking top 8 variants by coverage in window 9:111398565-111398566
2012-10-07 18:50:28,727 - DEBUG - Taking top 8 variants by coverage in window 9:111401944-111401945
2012-10-07 18:50:29,161 - DEBUG - Taking top 8 variants by coverage in window 9:111405472-111405475
2012-10-07 18:50:29,503 - DEBUG - Taking top 8 variants by coverage in window 9:111407213-111407214
2012-10-07 18:50:30,009 - DEBUG - Taking top 8 variants by coverage in window 9:111412614-111412615
2012-10-07 18:50:30,238 - DEBUG - Taking top 8 variants by coverage in window 9:111413672-111413673
2012-10-07 18:50:30,554 - DEBUG - Taking top 8 variants by coverage in window 9:111415328-111415329
2012-10-07 18:50:30,561 - DEBUG - Taking top 8 variants by coverage in window 9:111415331-111415332
2012-10-07 18:50:30,576 - DEBUG - Taking top 8 variants by coverage in window 9:111415343-111415344
2012-10-07 18:50:30,583 - DEBUG - Taking top 8 variants by coverage in window 9:111415344-111415345
2012-10-07 18:50:30,730 - DEBUG - Taking top 8 variants by coverage in window 9:111416476-111416477
2012-10-07 18:50:31,198 - DEBUG - Taking top 8 variants by coverage in window 9:111418553-111418559
2012-10-07 18:50:31,591 - DEBUG - Taking top 8 variants by coverage in window 9:111419558-111419560
2012-10-07 18:50:32,010 - DEBUG - Taking top 8 variants by coverage in window 9:111422791-111422794
2012-10-07 18:50:32,093 - DEBUG - Taking top 8 variants by coverage in window 9:111422817-111422818
2012-10-07 18:50:32,804 - DEBUG - Taking top 8 variants by coverage in window 9:111431381-111431382
2012-10-07 18:50:33,588 - DEBUG - Taking top 8 variants by coverage in window 9:111440145-111440146
2012-10-07 18:50:34,540 - DEBUG - Taking top 8 variants by coverage in window 9:111451907-111451917
2012-10-07 18:50:35,490 - DEBUG - Taking top 8 variants by coverage in window 9:111462419-111462420
2012-10-07 18:50:35,529 - DEBUG - Taking top 8 variants by coverage in window 9:111462903-111462907
2012-10-07 18:50:35,795 - DEBUG - Taking top 8 variants by coverage in window 9:111462926-111462927
2012-10-07 18:50:35,823 - DEBUG - Taking top 8 variants by coverage in window 9:111462928-111462929
2012-10-07 18:50:36,449 - DEBUG - Taking top 8 variants by coverage in window 9:111473693-111473695
2012-10-07 18:50:36,489 - DEBUG - Taking top 8 variants by coverage in window 9:111473703-111473704
2012-10-07 18:50:37,010 - DEBUG - Taking top 8 variants by coverage in window 9:111478879-111478880
2012-10-07 18:50:37,253 - DEBUG - Taking top 8 variants by coverage in window 9:111481849-111481850
2012-10-07 18:50:37,533 - DEBUG - Taking top 8 variants by coverage in window 9:111481905-111481909
2012-10-07 18:50:37,581 - DEBUG - Taking top 8 variants by coverage in window 9:111481915-111481916
2012-10-07 18:50:37,643 - DEBUG - Taking top 8 variants by coverage in window 9:111481927-111481929
2012-10-07 18:50:37,707 - DEBUG - Taking top 8 variants by coverage in window 9:111481933-111481934
2012-10-07 18:50:38,039 - DEBUG - Taking top 8 variants by coverage in window 9:111482082-111482083
2012-10-07 18:50:38,072 - DEBUG - Taking top 8 variants by coverage in window 9:111482143-111482147
2012-10-07 18:50:38,105 - DEBUG - Taking top 8 variants by coverage in window 9:111482171-111482175
2012-10-07 18:50:38,200 - DEBUG - Taking top 8 variants by coverage in window 9:111483951-111483952
2012-10-07 18:50:38,528 - DEBUG - Taking top 8 variants by coverage in window 9:111488684-111488685
2012-10-07 18:50:38,633 - DEBUG - Taking top 8 variants by coverage in window 9:111491265-111491266
2012-10-07 18:50:38,823 - DEBUG - Taking top 8 variants by coverage in window 9:111493617-111493618
2012-10-07 18:50:38,834 - DEBUG - Taking top 8 variants by coverage in window 9:111493631-111493632
2012-10-07 18:50:39,057 - DEBUG - Taking top 8 variants by coverage in window 9:111497455-111497456
2012-10-07 18:50:39,076 - DEBUG - Taking top 8 variants by coverage in window 9:111497460-111497461
2012-10-07 18:50:39,816 - DEBUG - Taking top 8 variants by coverage in window 9:111507302-111507303
2012-10-07 18:50:39,858 - DEBUG - Taking top 8 variants by coverage in window 9:111507365-111507366
2012-10-07 18:50:40,166 - DEBUG - Taking top 8 variants by coverage in window 9:111511161-111511162
2012-10-07 18:50:40,248 - DEBUG - Taking top 8 variants by coverage in window 9:111514661-111514664
2012-10-07 18:50:40,589 - DEBUG - Taking top 8 variants by coverage in window 9:111519676-111519680
2012-10-07 18:50:40,765 - DEBUG - Taking top 8 variants by coverage in window 9:111522810-111522811
2012-10-07 18:50:40,924 - DEBUG - Taking top 8 variants by coverage in window 9:111526234-111526235
2012-10-07 18:50:40,941 - DEBUG - Taking top 8 variants by coverage in window 9:111526264-111526265
2012-10-07 18:50:40,998 - DEBUG - Taking top 8 variants by coverage in window 9:111527416-111527417
2012-10-07 18:50:41,127 - DEBUG - Taking top 8 variants by coverage in window 9:111531182-111531187
2012-10-07 18:50:41,328 - DEBUG - Taking top 8 variants by coverage in window 9:111531197-111531198
2012-10-07 18:50:41,483 - DEBUG - Taking top 8 variants by coverage in window 9:111531256-111531258
2012-10-07 18:50:41,727 - DEBUG - Taking top 8 variants by coverage in window 9:111535071-111535072
2012-10-07 18:50:42,276 - DEBUG - Taking top 8 variants by coverage in window 9:111539688-111539689
2012-10-07 18:50:43,059 - DEBUG - Taking top 8 variants by coverage in window 9:111545672-111545673
2012-10-07 18:50:43,089 - DEBUG - Taking top 8 variants by coverage in window 9:111545880-111545881
2012-10-07 18:50:43,863 - DEBUG - Taking top 8 variants by coverage in window 9:111555083-111555084
2012-10-07 18:50:44,382 - DEBUG - Taking top 8 variants by coverage in window 9:111559474-111559475
2012-10-07 18:50:44,823 - DEBUG - Taking top 8 variants by coverage in window 9:111563949-111563950
2012-10-07 18:50:45,328 - DEBUG - Taking top 8 variants by coverage in window 9:111569284-111569287
2012-10-07 18:50:45,641 - DEBUG - Taking top 8 variants by coverage in window 9:111573193-111573194
2012-10-07 18:50:45,678 - DEBUG - Taking top 8 variants by coverage in window 9:111573412-111573413
2012-10-07 18:50:45,727 - DEBUG - Taking top 8 variants by coverage in window 9:111573720-111573721
2012-10-07 18:50:45,864 - DEBUG - Taking top 8 variants by coverage in window 9:111574749-111574750
2012-10-07 18:50:46,048 - DEBUG - Taking top 8 variants by coverage in window 9:111575747-111575748
2012-10-07 18:50:46,077 - DEBUG - Taking top 8 variants by coverage in window 9:111575797-111575798
2012-10-07 18:50:46,407 - DEBUG - Taking top 8 variants by coverage in window 9:111579210-111579211
2012-10-07 18:50:46,628 - DEBUG - Taking top 8 variants by coverage in window 9:111582113-111582115
2012-10-07 18:50:46,794 - DEBUG - Taking top 8 variants by coverage in window 9:111582127-111582128
2012-10-07 18:50:47,775 - DEBUG - Taking top 8 variants by coverage in window 9:111594355-111594356
2012-10-07 18:50:47,886 - DEBUG - Taking top 8 variants by coverage in window 9:111595396-111595401
2012-10-07 18:50:48,078 - DEBUG - Taking top 8 variants by coverage in window 9:111595439-111595445
2012-10-07 18:50:48,639 - DEBUG - Taking top 8 variants by coverage in window 9:111595471-111595480
2012-10-07 18:50:49,563 - DEBUG - Taking top 8 variants by coverage in window 9:111595483-111595484
2012-10-07 18:50:49,749 - DEBUG - Taking top 8 variants by coverage in window 9:111595502-111595510
2012-10-07 18:50:51,101 - DEBUG - Taking top 8 variants by coverage in window 9:111595522-111595530
2012-10-07 18:50:51,667 - DEBUG - Taking top 8 variants by coverage in window 9:111595562-111595567
2012-10-07 18:50:51,880 - DEBUG - Taking top 8 variants by coverage in window 9:111595580-111595585
2012-10-07 18:50:52,054 - DEBUG - Taking top 8 variants by coverage in window 9:111595672-111595673
2012-10-07 18:50:52,905 - DEBUG - Taking top 8 variants by coverage in window 9:111602082-111602088
2012-10-07 18:50:53,229 - DEBUG - Taking top 8 variants by coverage in window 9:111603594-111603595
2012-10-07 18:50:53,312 - DEBUG - Taking top 8 variants by coverage in window 9:111606670-111606674
2012-10-07 18:50:54,023 - DEBUG - Taking top 8 variants by coverage in window 9:111614219-111614220
2012-10-07 18:50:54,474 - DEBUG - Taking top 8 variants by coverage in window 9:111620110-111620111
2012-10-07 18:50:56,267 - DEBUG - Taking top 8 variants by coverage in window 9:111634047-111634048
2012-10-07 18:50:57,681 - DEBUG - Taking top 8 variants by coverage in window 9:111648372-111648373
2012-10-07 18:50:58,152 - DEBUG - Taking top 8 variants by coverage in window 9:111652944-111652945
2012-10-07 18:50:58,458 - DEBUG - Taking top 8 variants by coverage in window 9:111655287-111655309
2012-10-07 18:50:58,634 - DEBUG - Taking top 8 variants by coverage in window 9:111655312-111655313
2012-10-07 18:50:59,121 - DEBUG - Taking top 8 variants by coverage in window 9:111659301-111659302
2012-10-07 18:50:59,167 - DEBUG - Taking top 8 variants by coverage in window 9:111659333-111659334
2012-10-07 18:50:59,178 - DEBUG - Taking top 8 variants by coverage in window 9:111659334-111659335
2012-10-07 18:50:59,458 - DEBUG - Taking top 8 variants by coverage in window 9:111662356-111662357
2012-10-07 18:50:59,991 - DEBUG - Taking top 8 variants by coverage in window 9:111669266-111669287
2012-10-07 18:51:00,413 - DEBUG - Taking top 8 variants by coverage in window 9:111672770-111672771
2012-10-07 18:51:00,900 - DEBUG - Taking top 8 variants by coverage in window 9:111676632-111676633
2012-10-07 18:51:01,000 - DEBUG - Taking top 8 variants by coverage in window 9:111677320-111677321
2012-10-07 18:51:01,744 - DEBUG - Taking top 8 variants by coverage in window 9:111685871-111685875
2012-10-07 18:51:02,520 - DEBUG - Taking top 8 variants by coverage in window 9:111694221-111694222
2012-10-07 18:51:02,684 - DEBUG - Taking top 8 variants by coverage in window 9:111695114-111695118
2012-10-07 18:51:02,741 - DEBUG - Taking top 8 variants by coverage in window 9:111695164-111695165
2012-10-07 18:51:02,769 - DEBUG - Taking top 8 variants by coverage in window 9:111695181-111695182
2012-10-07 18:51:02,923 - DEBUG - Taking top 8 variants by coverage in window 9:111695282-111695284
2012-10-07 18:51:03,233 - DEBUG - Taking top 8 variants by coverage in window 9:111695310-111695311
2012-10-07 18:51:03,313 - DEBUG - Taking top 8 variants by coverage in window 9:111695312-111695313
2012-10-07 18:51:03,444 - DEBUG - Taking top 8 variants by coverage in window 9:111695318-111695319
2012-10-07 18:51:03,502 - DEBUG - Taking top 8 variants by coverage in window 9:111695319-111695320
2012-10-07 18:51:03,846 - DEBUG - Taking top 8 variants by coverage in window 9:111695329-111695330
2012-10-07 18:51:03,996 - DEBUG - Taking top 8 variants by coverage in window 9:111695439-111695440
2012-10-07 18:51:04,006 - DEBUG - Taking top 8 variants by coverage in window 9:111695440-111695442
2012-10-07 18:51:04,316 - DEBUG - Taking top 8 variants by coverage in window 9:111696665-111696675
2012-10-07 18:51:04,354 - DEBUG - Taking top 8 variants by coverage in window 9:111696676-111696677
2012-10-07 18:51:04,376 - DEBUG - Taking top 8 variants by coverage in window 9:111696679-111696680
2012-10-07 18:51:04,560 - DEBUG - Taking top 8 variants by coverage in window 9:111697981-111697984
2012-10-07 18:51:05,190 - DEBUG - Taking top 8 variants by coverage in window 9:111702055-111702057
2012-10-07 18:51:05,694 - DEBUG - Taking top 8 variants by coverage in window 9:111707824-111707825
2012-10-07 18:51:05,900 - DEBUG - Taking top 8 variants by coverage in window 9:111715304-111715306
2012-10-07 18:51:06,285 - DEBUG - Taking top 8 variants by coverage in window 9:111719947-111719948
2012-10-07 18:51:07,125 - DEBUG - Taking top 8 variants by coverage in window 9:111730619-111730620
2012-10-07 18:51:08,139 - DEBUG - Taking top 8 variants by coverage in window 9:111741528-111741529
2012-10-07 18:51:08,282 - DEBUG - Taking top 8 variants by coverage in window 9:111742074-111742075
2012-10-07 18:51:09,519 - DEBUG - Taking top 8 variants by coverage in window 9:111757187-111757188
2012-10-07 18:51:09,716 - DEBUG - Taking top 8 variants by coverage in window 9:111758838-111758839
2012-10-07 18:51:10,136 - DEBUG - Taking top 8 variants by coverage in window 9:111763738-111763747
2012-10-07 18:51:10,162 - DEBUG - Taking top 8 variants by coverage in window 9:111763757-111763758
2012-10-07 18:51:10,244 - DEBUG - Taking top 8 variants by coverage in window 9:111763791-111763792
2012-10-07 18:51:10,300 - DEBUG - Taking top 8 variants by coverage in window 9:111763905-111763906
2012-10-07 18:51:10,697 - DEBUG - Taking top 8 variants by coverage in window 9:111767580-111767581
2012-10-07 18:51:11,371 - DEBUG - Taking top 8 variants by coverage in window 9:111771712-111771713
2012-10-07 18:51:11,433 - DEBUG - Taking top 8 variants by coverage in window 9:111771799-111771800
2012-10-07 18:51:12,491 - DEBUG - Taking top 8 variants by coverage in window 9:111778563-111778571
2012-10-07 18:51:12,530 - DEBUG - Taking top 8 variants by coverage in window 9:111778785-111778786
2012-10-07 18:51:12,570 - DEBUG - Taking top 8 variants by coverage in window 9:111778880-111778881
2012-10-07 18:51:13,280 - DEBUG - Taking top 8 variants by coverage in window 9:111784856-111784857
2012-10-07 18:51:14,925 - DEBUG - Taking top 8 variants by coverage in window 9:111799250-111799251
2012-10-07 18:51:15,046 - DEBUG - Taking top 8 variants by coverage in window 9:111800147-111800148
2012-10-07 18:51:15,543 - DEBUG - Taking top 8 variants by coverage in window 9:111805379-111805380
2012-10-07 18:51:15,816 - DEBUG - Taking top 8 variants by coverage in window 9:111808198-111808199
2012-10-07 18:51:16,350 - DEBUG - Taking top 8 variants by coverage in window 9:111813887-111813892
2012-10-07 18:51:17,008 - DEBUG - Taking top 8 variants by coverage in window 9:111819336-111819340
2012-10-07 18:51:17,147 - DEBUG - Taking top 8 variants by coverage in window 9:111819363-111819364
2012-10-07 18:51:17,387 - DEBUG - Taking top 8 variants by coverage in window 9:111820307-111820319
2012-10-07 18:51:17,542 - DEBUG - Taking top 8 variants by coverage in window 9:111820626-111820631
2012-10-07 18:51:18,030 - DEBUG - Taking top 8 variants by coverage in window 9:111825577-111825578
2012-10-07 18:51:18,048 - DEBUG - Taking top 8 variants by coverage in window 9:111825687-111825688
2012-10-07 18:51:19,404 - DEBUG - Taking top 8 variants by coverage in window 9:111835515-111835517
2012-10-07 18:51:19,832 - DEBUG - Taking top 8 variants by coverage in window 9:111836190-111836194
2012-10-07 18:51:22,667 - DEBUG - Taking top 8 variants by coverage in window 9:111862132-111862155
2012-10-07 18:51:23,007 - DEBUG - Taking top 8 variants by coverage in window 9:111865012-111865015
2012-10-07 18:51:23,249 - DEBUG - Taking top 8 variants by coverage in window 9:111866573-111866574
2012-10-07 18:51:23,275 - DEBUG - Taking top 8 variants by coverage in window 9:111866594-111866595
2012-10-07 18:51:23,941 - DEBUG - Taking top 8 variants by coverage in window 9:111876552-111876554
2012-10-07 18:51:24,866 - DEBUG - Taking top 8 variants by coverage in window 9:111884298-111884300
2012-10-07 18:51:25,128 - DEBUG - Taking top 8 variants by coverage in window 9:111885474-111885475
2012-10-07 18:51:25,227 - DEBUG - Taking top 8 variants by coverage in window 9:111885549-111885553
2012-10-07 18:51:25,953 - DEBUG - Taking top 8 variants by coverage in window 9:111890335-111890336
2012-10-07 18:51:26,035 - DEBUG - Taking top 8 variants by coverage in window 9:111890667-111890668
2012-10-07 18:51:27,339 - DEBUG - Taking top 8 variants by coverage in window 9:111901873-111901874
2012-10-07 18:51:28,257 - DEBUG - Taking top 8 variants by coverage in window 9:111912319-111912320
2012-10-07 18:51:28,723 - DEBUG - Taking top 8 variants by coverage in window 9:111916445-111916446
2012-10-07 18:51:28,744 - DEBUG - Taking top 8 variants by coverage in window 9:111916488-111916489
2012-10-07 18:51:28,831 - DEBUG - Taking top 8 variants by coverage in window 9:111917980-111917981
2012-10-07 18:51:29,035 - DEBUG - Taking top 8 variants by coverage in window 9:111919341-111919342
2012-10-07 18:51:29,055 - DEBUG - Taking top 8 variants by coverage in window 9:111919344-111919345
2012-10-07 18:51:29,652 - DEBUG - Taking top 8 variants by coverage in window 9:111924412-111924413
2012-10-07 18:51:29,714 - DEBUG - Taking top 8 variants by coverage in window 9:111924477-111924478
2012-10-07 18:51:29,887 - DEBUG - Taking top 8 variants by coverage in window 9:111925894-111925895
2012-10-07 18:51:30,733 - DEBUG - Taking top 8 variants by coverage in window 9:111931836-111931837
2012-10-07 18:51:31,169 - DEBUG - Taking top 8 variants by coverage in window 9:111936504-111936505
2012-10-07 18:51:31,204 - DEBUG - Taking top 8 variants by coverage in window 9:111937426-111937431
2012-10-07 18:51:31,561 - DEBUG - Taking top 8 variants by coverage in window 9:111941192-111941199
2012-10-07 18:51:31,822 - DEBUG - Taking top 8 variants by coverage in window 9:111943408-111943410
2012-10-07 18:51:31,974 - DEBUG - Taking top 8 variants by coverage in window 9:111945278-111945279
2012-10-07 18:51:32,395 - DEBUG - Taking top 8 variants by coverage in window 9:111951456-111951457
2012-10-07 18:51:33,513 - DEBUG - Taking top 8 variants by coverage in window 9:111962552-111962553
2012-10-07 18:51:34,348 - DEBUG - Taking top 8 variants by coverage in window 9:111974467-111974468
2012-10-07 18:51:35,602 - DEBUG - Taking top 8 variants by coverage in window 9:111987894-111987895
2012-10-07 18:51:36,094 - DEBUG - Taking top 8 variants by coverage in window 9:111990666-111990667
2012-10-07 18:51:36,443 - DEBUG - Taking top 8 variants by coverage in window 9:111993748-111993749
2012-10-07 18:51:37,006 - DEBUG - Taking top 8 variants by coverage in window 9:111998182-111998184
2012-10-07 18:51:37,026 - DEBUG - Taking top 8 variants by coverage in window 9:111998188-111998189
2012-10-07 18:51:38,324 - DEBUG - Read 90828 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 18:51:38,560 - DEBUG - Read 99538 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 18:51:38,813 - DEBUG - Read 115588 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 18:51:39,106 - DEBUG - Read 116191 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 18:51:39,376 - DEBUG - Read 110990 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 18:51:39,618 - DEBUG - Read 106825 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 18:51:39,872 - DEBUG - Read 112084 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 18:51:40,113 - DEBUG - Read 98976 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 18:51:40,342 - DEBUG - Read 95401 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 18:51:40,580 - DEBUG - Read 98338 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 18:51:40,833 - DEBUG - Read 107890 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 18:51:41,059 - DEBUG - Read 97479 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 18:51:41,292 - DEBUG - Read 97308 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 18:51:41,532 - DEBUG - Read 106815 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 18:51:41,790 - DEBUG - Read 115076 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 18:51:42,010 - DEBUG - Read 90261 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 18:51:42,254 - DEBUG - Read 110988 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 18:51:42,504 - DEBUG - Read 106861 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 18:51:42,715 - DEBUG - Read 90176 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 18:51:42,947 - DEBUG - Read 92819 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 18:51:43,055 - DEBUG - Detected 25069 variants in 90828 reads
2012-10-07 18:51:43,235 - DEBUG - Detected 35740 variants in 99538 reads
2012-10-07 18:51:43,486 - DEBUG - Detected 43441 variants in 115588 reads
2012-10-07 18:51:43,757 - DEBUG - Detected 50748 variants in 116191 reads
2012-10-07 18:51:44,050 - DEBUG - Detected 57280 variants in 110990 reads
2012-10-07 18:51:44,376 - DEBUG - Detected 63300 variants in 106825 reads
2012-10-07 18:51:44,743 - DEBUG - Detected 75803 variants in 112084 reads
2012-10-07 18:51:45,151 - DEBUG - Detected 80512 variants in 98976 reads
2012-10-07 18:51:45,577 - DEBUG - Detected 85635 variants in 95401 reads
2012-10-07 18:51:46,073 - DEBUG - Detected 90290 variants in 98338 reads
2012-10-07 18:51:46,555 - DEBUG - Detected 94446 variants in 107890 reads
2012-10-07 18:51:47,043 - DEBUG - Detected 98096 variants in 97479 reads
2012-10-07 18:51:47,553 - DEBUG - Detected 102078 variants in 97308 reads
2012-10-07 18:51:48,101 - DEBUG - Detected 108060 variants in 106815 reads
2012-10-07 18:51:48,682 - DEBUG - Detected 114930 variants in 115076 reads
2012-10-07 18:51:49,321 - DEBUG - Detected 118812 variants in 90261 reads
2012-10-07 18:51:49,955 - DEBUG - Detected 122852 variants in 110988 reads
2012-10-07 18:51:50,610 - DEBUG - Detected 127086 variants in 106861 reads
2012-10-07 18:51:51,269 - DEBUG - Detected 131055 variants in 90176 reads
2012-10-07 18:51:51,946 - DEBUG - Detected 134930 variants in 92819 reads
2012-10-07 18:51:53,475 - DEBUG - Taking top 8 variants by coverage in window 9:112007158-112007165
2012-10-07 18:51:53,899 - DEBUG - Taking top 8 variants by coverage in window 9:112010135-112010136
2012-10-07 18:51:55,397 - DEBUG - Taking top 8 variants by coverage in window 9:112030801-112030802
2012-10-07 18:51:56,362 - DEBUG - Taking top 8 variants by coverage in window 9:112040475-112040476
2012-10-07 18:51:56,423 - DEBUG - Taking top 8 variants by coverage in window 9:112040495-112040496
2012-10-07 18:51:56,886 - DEBUG - Taking top 8 variants by coverage in window 9:112049122-112049123
2012-10-07 18:51:56,986 - DEBUG - Taking top 8 variants by coverage in window 9:112051264-112051268
2012-10-07 18:51:57,127 - DEBUG - Taking top 8 variants by coverage in window 9:112052931-112052932
2012-10-07 18:51:57,394 - DEBUG - Taking top 8 variants by coverage in window 9:112058433-112058434
2012-10-07 18:51:57,437 - DEBUG - Taking top 8 variants by coverage in window 9:112058450-112058451
2012-10-07 18:51:57,606 - DEBUG - Taking top 8 variants by coverage in window 9:112060650-112060651
2012-10-07 18:51:57,910 - DEBUG - Taking top 8 variants by coverage in window 9:112066627-112066628
2012-10-07 18:51:58,845 - DEBUG - Taking top 8 variants by coverage in window 9:112082505-112082520
2012-10-07 18:51:59,806 - DEBUG - Taking top 8 variants by coverage in window 9:112098417-112098418
2012-10-07 18:52:00,056 - DEBUG - Taking top 8 variants by coverage in window 9:112102315-112102321
2012-10-07 18:52:00,256 - DEBUG - Taking top 8 variants by coverage in window 9:112104511-112104517
2012-10-07 18:52:00,290 - DEBUG - Taking top 8 variants by coverage in window 9:112104541-112104542
2012-10-07 18:52:00,552 - DEBUG - Taking top 8 variants by coverage in window 9:112108189-112108190
2012-10-07 18:52:00,843 - DEBUG - Taking top 8 variants by coverage in window 9:112110244-112110245
2012-10-07 18:52:00,931 - DEBUG - Taking top 8 variants by coverage in window 9:112111855-112111856
2012-10-07 18:52:01,187 - DEBUG - Taking top 8 variants by coverage in window 9:112114171-112114172
2012-10-07 18:52:01,301 - DEBUG - Taking top 8 variants by coverage in window 9:112117710-112117711
2012-10-07 18:52:02,213 - DEBUG - Taking top 8 variants by coverage in window 9:112129588-112129594
2012-10-07 18:52:02,845 - DEBUG - Taking top 8 variants by coverage in window 9:112142279-112142280
2012-10-07 18:52:02,881 - DEBUG - Taking top 8 variants by coverage in window 9:112143381-112143382
2012-10-07 18:52:03,134 - DEBUG - Taking top 8 variants by coverage in window 9:112152253-112152254
2012-10-07 18:52:03,423 - DEBUG - Taking top 8 variants by coverage in window 9:112154740-112154741
2012-10-07 18:52:03,641 - DEBUG - Taking top 8 variants by coverage in window 9:112157124-112157137
2012-10-07 18:52:04,496 - DEBUG - Taking top 8 variants by coverage in window 9:112172628-112172629
2012-10-07 18:52:04,531 - DEBUG - Taking top 8 variants by coverage in window 9:112172651-112172655
2012-10-07 18:52:04,669 - DEBUG - Taking top 8 variants by coverage in window 9:112173739-112173740
2012-10-07 18:52:05,070 - DEBUG - Taking top 8 variants by coverage in window 9:112177591-112177592
2012-10-07 18:52:05,083 - DEBUG - Taking top 8 variants by coverage in window 9:112177675-112177689
2012-10-07 18:52:05,661 - DEBUG - Taking top 8 variants by coverage in window 9:112188054-112188055
2012-10-07 18:52:06,157 - DEBUG - Taking top 8 variants by coverage in window 9:112193888-112193908
2012-10-07 18:52:06,906 - DEBUG - Taking top 8 variants by coverage in window 9:112200194-112200203
2012-10-07 18:52:07,593 - DEBUG - Taking top 8 variants by coverage in window 9:112206475-112206476
2012-10-07 18:52:08,489 - DEBUG - Taking top 8 variants by coverage in window 9:112222350-112222351
2012-10-07 18:52:08,765 - DEBUG - Taking top 8 variants by coverage in window 9:112225545-112225546
2012-10-07 18:52:09,316 - DEBUG - Taking top 8 variants by coverage in window 9:112230522-112230523
2012-10-07 18:52:09,530 - DEBUG - Taking top 8 variants by coverage in window 9:112239019-112239020
2012-10-07 18:52:10,532 - DEBUG - Taking top 8 variants by coverage in window 9:112248838-112248839
2012-10-07 18:52:10,871 - DEBUG - Taking top 8 variants by coverage in window 9:112252358-112252359
2012-10-07 18:52:11,016 - DEBUG - Taking top 8 variants by coverage in window 9:112253676-112253677
2012-10-07 18:52:11,173 - DEBUG - Taking top 8 variants by coverage in window 9:112254680-112254682
2012-10-07 18:52:11,216 - DEBUG - Taking top 8 variants by coverage in window 9:112254706-112254707
2012-10-07 18:52:11,461 - DEBUG - Taking top 8 variants by coverage in window 9:112259286-112259293
2012-10-07 18:52:11,745 - DEBUG - Taking top 8 variants by coverage in window 9:112261935-112261939
2012-10-07 18:52:12,192 - DEBUG - Taking top 8 variants by coverage in window 9:112270522-112270523
2012-10-07 18:52:12,434 - DEBUG - Taking top 8 variants by coverage in window 9:112272544-112272545
2012-10-07 18:52:13,398 - DEBUG - Taking top 8 variants by coverage in window 9:112288691-112288692
2012-10-07 18:52:14,177 - DEBUG - Taking top 8 variants by coverage in window 9:112299308-112299309
2012-10-07 18:52:14,291 - DEBUG - Taking top 8 variants by coverage in window 9:112299421-112299422
2012-10-07 18:52:14,382 - DEBUG - Taking top 8 variants by coverage in window 9:112300644-112300645
2012-10-07 18:52:14,767 - DEBUG - Taking top 8 variants by coverage in window 9:112304987-112304988
2012-10-07 18:52:15,254 - DEBUG - Taking top 8 variants by coverage in window 9:112309164-112309165
2012-10-07 18:52:15,463 - DEBUG - Taking top 8 variants by coverage in window 9:112311409-112311410
2012-10-07 18:52:16,116 - DEBUG - Taking top 8 variants by coverage in window 9:112322399-112322401
2012-10-07 18:52:16,197 - DEBUG - Taking top 8 variants by coverage in window 9:112322408-112322409
2012-10-07 18:52:16,468 - DEBUG - Taking top 8 variants by coverage in window 9:112325668-112325669
2012-10-07 18:52:17,113 - DEBUG - Taking top 8 variants by coverage in window 9:112332855-112332864
2012-10-07 18:52:18,305 - DEBUG - Taking top 8 variants by coverage in window 9:112344107-112344108
2012-10-07 18:52:19,088 - DEBUG - Taking top 8 variants by coverage in window 9:112350366-112350367
2012-10-07 18:52:19,520 - DEBUG - Taking top 8 variants by coverage in window 9:112355095-112355096
2012-10-07 18:52:20,439 - DEBUG - Taking top 8 variants by coverage in window 9:112366762-112366769
2012-10-07 18:52:21,492 - DEBUG - Taking top 8 variants by coverage in window 9:112382182-112382183
2012-10-07 18:52:21,670 - DEBUG - Taking top 8 variants by coverage in window 9:112385252-112385261
2012-10-07 18:52:21,766 - DEBUG - Taking top 8 variants by coverage in window 9:112386001-112386002
2012-10-07 18:52:21,810 - DEBUG - Taking top 8 variants by coverage in window 9:112392584-112392585
2012-10-07 18:52:21,827 - DEBUG - Taking top 8 variants by coverage in window 9:112392610-112392611
2012-10-07 18:52:22,250 - DEBUG - Taking top 8 variants by coverage in window 9:112397055-112397057
2012-10-07 18:52:22,388 - DEBUG - Taking top 8 variants by coverage in window 9:112397111-112397112
2012-10-07 18:52:22,465 - DEBUG - Taking top 8 variants by coverage in window 9:112397346-112397348
2012-10-07 18:52:22,549 - DEBUG - Taking top 8 variants by coverage in window 9:112397378-112397379
2012-10-07 18:52:22,642 - DEBUG - Taking top 8 variants by coverage in window 9:112397663-112397664
2012-10-07 18:52:22,939 - DEBUG - Taking top 8 variants by coverage in window 9:112399939-112399940
2012-10-07 18:52:23,082 - DEBUG - Taking top 8 variants by coverage in window 9:112400246-112400247
2012-10-07 18:52:23,144 - DEBUG - Taking top 8 variants by coverage in window 9:112400291-112400292
2012-10-07 18:52:24,102 - DEBUG - Taking top 8 variants by coverage in window 9:112418198-112418199
2012-10-07 18:52:24,126 - DEBUG - Taking top 8 variants by coverage in window 9:112418212-112418213
2012-10-07 18:52:24,478 - DEBUG - Taking top 8 variants by coverage in window 9:112422419-112422420
2012-10-07 18:52:25,075 - DEBUG - Taking top 8 variants by coverage in window 9:112430268-112430270
2012-10-07 18:52:26,037 - DEBUG - Taking top 8 variants by coverage in window 9:112440120-112440121
2012-10-07 18:52:27,330 - DEBUG - Taking top 8 variants by coverage in window 9:112461434-112461435
2012-10-07 18:52:27,531 - DEBUG - Taking top 8 variants by coverage in window 9:112463590-112463591
2012-10-07 18:52:27,654 - DEBUG - Taking top 8 variants by coverage in window 9:112464536-112464537
2012-10-07 18:52:28,666 - DEBUG - Taking top 8 variants by coverage in window 9:112475312-112475313
2012-10-07 18:52:28,784 - DEBUG - Taking top 8 variants by coverage in window 9:112476280-112476282
2012-10-07 18:52:29,317 - DEBUG - Taking top 8 variants by coverage in window 9:112482697-112482709
2012-10-07 18:52:29,389 - DEBUG - Taking top 8 variants by coverage in window 9:112482719-112482723
2012-10-07 18:52:29,873 - DEBUG - Taking top 8 variants by coverage in window 9:112485585-112485586
2012-10-07 18:52:29,998 - DEBUG - Taking top 8 variants by coverage in window 9:112487340-112487341
2012-10-07 18:52:30,309 - DEBUG - Taking top 8 variants by coverage in window 9:112492156-112492157
2012-10-07 18:52:31,124 - DEBUG - Taking top 8 variants by coverage in window 9:112502520-112502521
2012-10-07 18:52:32,831 - DEBUG - Taking top 8 variants by coverage in window 9:112536998-112536999
2012-10-07 18:52:32,929 - DEBUG - Taking top 8 variants by coverage in window 9:112537254-112537258
2012-10-07 18:52:33,401 - DEBUG - Taking top 8 variants by coverage in window 9:112541048-112541049
2012-10-07 18:52:33,918 - DEBUG - Taking top 8 variants by coverage in window 9:112545205-112545210
2012-10-07 18:52:34,366 - DEBUG - Taking top 8 variants by coverage in window 9:112551949-112551951
2012-10-07 18:52:34,430 - DEBUG - Taking top 8 variants by coverage in window 9:112553207-112553208
2012-10-07 18:52:34,572 - DEBUG - Taking top 8 variants by coverage in window 9:112555470-112555471
2012-10-07 18:52:34,904 - DEBUG - Taking top 8 variants by coverage in window 9:112559534-112559535
2012-10-07 18:52:35,133 - DEBUG - Taking top 8 variants by coverage in window 9:112563121-112563122
2012-10-07 18:52:35,265 - DEBUG - Taking top 8 variants by coverage in window 9:112563718-112563719
2012-10-07 18:52:35,336 - DEBUG - Taking top 8 variants by coverage in window 9:112570043-112570044
2012-10-07 18:52:35,468 - DEBUG - Taking top 8 variants by coverage in window 9:112571067-112571071
2012-10-07 18:52:35,959 - DEBUG - Taking top 8 variants by coverage in window 9:112575874-112575875
2012-10-07 18:52:36,022 - DEBUG - Taking top 8 variants by coverage in window 9:112577645-112577647
2012-10-07 18:52:36,352 - DEBUG - Taking top 8 variants by coverage in window 9:112582534-112582535
2012-10-07 18:52:36,593 - DEBUG - Taking top 8 variants by coverage in window 9:112586485-112586486
2012-10-07 18:52:36,882 - DEBUG - Taking top 8 variants by coverage in window 9:112588438-112588444
2012-10-07 18:52:36,922 - DEBUG - Taking top 8 variants by coverage in window 9:112588998-112588999
2012-10-07 18:52:37,000 - DEBUG - Taking top 8 variants by coverage in window 9:112590429-112590446
2012-10-07 18:52:37,008 - DEBUG - Taking top 8 variants by coverage in window 9:112590479-112590480
2012-10-07 18:52:37,252 - DEBUG - Taking top 8 variants by coverage in window 9:112593732-112593733
2012-10-07 18:52:37,797 - DEBUG - Taking top 8 variants by coverage in window 9:112599674-112599683
2012-10-07 18:52:38,218 - DEBUG - Taking top 8 variants by coverage in window 9:112603060-112603061
2012-10-07 18:52:38,348 - DEBUG - Taking top 8 variants by coverage in window 9:112604165-112604169
2012-10-07 18:52:38,377 - DEBUG - Taking top 8 variants by coverage in window 9:112604187-112604189
2012-10-07 18:52:40,604 - DEBUG - Taking top 8 variants by coverage in window 9:112627069-112627070
2012-10-07 18:52:40,663 - DEBUG - Taking top 8 variants by coverage in window 9:112627392-112627393
2012-10-07 18:52:41,214 - DEBUG - Taking top 8 variants by coverage in window 9:112633881-112633882
2012-10-07 18:52:41,532 - DEBUG - Taking top 8 variants by coverage in window 9:112638963-112638967
2012-10-07 18:52:42,366 - DEBUG - Taking top 8 variants by coverage in window 9:112651717-112651718
2012-10-07 18:52:43,445 - DEBUG - Taking top 8 variants by coverage in window 9:112667003-112667004
2012-10-07 18:52:43,649 - DEBUG - Taking top 8 variants by coverage in window 9:112669646-112669648
2012-10-07 18:52:44,719 - DEBUG - Taking top 8 variants by coverage in window 9:112681537-112681538
2012-10-07 18:52:44,875 - DEBUG - Taking top 8 variants by coverage in window 9:112681551-112681553
2012-10-07 18:52:45,030 - DEBUG - Taking top 8 variants by coverage in window 9:112681562-112681563
2012-10-07 18:52:47,582 - DEBUG - Taking top 8 variants by coverage in window 9:112708833-112708834
2012-10-07 18:52:47,777 - DEBUG - Taking top 8 variants by coverage in window 9:112709804-112709805
2012-10-07 18:52:48,348 - DEBUG - Taking top 8 variants by coverage in window 9:112715338-112715339
2012-10-07 18:52:48,471 - DEBUG - Taking top 8 variants by coverage in window 9:112715556-112715557
2012-10-07 18:52:49,849 - DEBUG - Taking top 8 variants by coverage in window 9:112730164-112730165
2012-10-07 18:52:49,875 - DEBUG - Taking top 8 variants by coverage in window 9:112730170-112730171
2012-10-07 18:52:51,195 - DEBUG - Taking top 8 variants by coverage in window 9:112747163-112747164
2012-10-07 18:52:51,342 - DEBUG - Taking top 8 variants by coverage in window 9:112750781-112750782
2012-10-07 18:52:51,368 - DEBUG - Taking top 8 variants by coverage in window 9:112750815-112750816
2012-10-07 18:52:51,394 - DEBUG - Taking top 8 variants by coverage in window 9:112750829-112750831
2012-10-07 18:52:51,878 - DEBUG - Taking top 8 variants by coverage in window 9:112752298-112752299
2012-10-07 18:52:52,284 - DEBUG - Taking top 8 variants by coverage in window 9:112757028-112757036
2012-10-07 18:52:52,614 - DEBUG - Taking top 8 variants by coverage in window 9:112758582-112758583
2012-10-07 18:52:53,402 - DEBUG - Taking top 8 variants by coverage in window 9:112767188-112767190
2012-10-07 18:52:53,491 - DEBUG - Taking top 8 variants by coverage in window 9:112767440-112767441
2012-10-07 18:52:53,528 - DEBUG - Taking top 8 variants by coverage in window 9:112767471-112767472
2012-10-07 18:52:54,719 - DEBUG - Taking top 8 variants by coverage in window 9:112777537-112777542
2012-10-07 18:52:54,839 - DEBUG - Taking top 8 variants by coverage in window 9:112778417-112778418
2012-10-07 18:52:55,671 - DEBUG - Taking top 8 variants by coverage in window 9:112785052-112785053
2012-10-07 18:52:55,684 - DEBUG - Taking top 8 variants by coverage in window 9:112785067-112785070
2012-10-07 18:52:56,783 - DEBUG - Taking top 8 variants by coverage in window 9:112795629-112795630
2012-10-07 18:52:57,219 - DEBUG - Taking top 8 variants by coverage in window 9:112798833-112798839
2012-10-07 18:52:57,299 - DEBUG - Taking top 8 variants by coverage in window 9:112798868-112798869
2012-10-07 18:52:58,498 - DEBUG - Taking top 8 variants by coverage in window 9:112815820-112815821
2012-10-07 18:52:59,529 - DEBUG - Taking top 8 variants by coverage in window 9:112826738-112826739
2012-10-07 18:52:59,634 - DEBUG - Taking top 8 variants by coverage in window 9:112827050-112827051
2012-10-07 18:53:00,005 - DEBUG - Taking top 8 variants by coverage in window 9:112831249-112831250
2012-10-07 18:53:00,109 - DEBUG - Taking top 8 variants by coverage in window 9:112832344-112832345
2012-10-07 18:53:00,135 - DEBUG - Taking top 8 variants by coverage in window 9:112832363-112832364
2012-10-07 18:53:00,760 - DEBUG - Taking top 8 variants by coverage in window 9:112837991-112837992
2012-10-07 18:53:00,775 - DEBUG - Taking top 8 variants by coverage in window 9:112838010-112838011
2012-10-07 18:53:00,880 - DEBUG - Taking top 8 variants by coverage in window 9:112838566-112838571
2012-10-07 18:53:01,346 - DEBUG - Taking top 8 variants by coverage in window 9:112842016-112842017
2012-10-07 18:53:01,362 - DEBUG - Taking top 8 variants by coverage in window 9:112842021-112842023
2012-10-07 18:53:01,415 - DEBUG - Taking top 8 variants by coverage in window 9:112842024-112842025
2012-10-07 18:53:01,880 - DEBUG - Taking top 8 variants by coverage in window 9:112846563-112846564
2012-10-07 18:53:01,893 - DEBUG - Taking top 8 variants by coverage in window 9:112846579-112846582
2012-10-07 18:53:02,661 - DEBUG - Taking top 8 variants by coverage in window 9:112857976-112857977
2012-10-07 18:53:02,677 - DEBUG - Taking top 8 variants by coverage in window 9:112857977-112857978
2012-10-07 18:53:03,665 - DEBUG - Taking top 8 variants by coverage in window 9:112888567-112888568
2012-10-07 18:53:03,931 - DEBUG - Taking top 8 variants by coverage in window 9:112890466-112890467
2012-10-07 18:53:03,962 - DEBUG - Taking top 8 variants by coverage in window 9:112890747-112890750
2012-10-07 18:53:04,157 - DEBUG - Taking top 8 variants by coverage in window 9:112892592-112892593
2012-10-07 18:53:04,455 - DEBUG - Taking top 8 variants by coverage in window 9:112900716-112900717
2012-10-07 18:53:04,497 - DEBUG - Taking top 8 variants by coverage in window 9:112901507-112901508
2012-10-07 18:53:04,592 - DEBUG - Taking top 8 variants by coverage in window 9:112901843-112901844
2012-10-07 18:53:04,633 - DEBUG - Taking top 8 variants by coverage in window 9:112902090-112902091
2012-10-07 18:53:05,427 - DEBUG - Taking top 8 variants by coverage in window 9:112914667-112914668
2012-10-07 18:53:06,118 - DEBUG - Taking top 8 variants by coverage in window 9:112923856-112923858
2012-10-07 18:53:06,378 - DEBUG - Taking top 8 variants by coverage in window 9:112924770-112924771
2012-10-07 18:53:07,502 - DEBUG - Taking top 8 variants by coverage in window 9:112936867-112936868
2012-10-07 18:53:07,525 - DEBUG - Taking top 8 variants by coverage in window 9:112936871-112936873
2012-10-07 18:53:07,968 - DEBUG - Taking top 8 variants by coverage in window 9:112943530-112943531
2012-10-07 18:53:08,199 - DEBUG - Taking top 8 variants by coverage in window 9:112946738-112946739
2012-10-07 18:53:08,557 - DEBUG - Taking top 8 variants by coverage in window 9:112949548-112949552
2012-10-07 18:53:08,920 - DEBUG - Taking top 8 variants by coverage in window 9:112954440-112954441
2012-10-07 18:53:09,948 - DEBUG - Taking top 8 variants by coverage in window 9:112965931-112965932
2012-10-07 18:53:10,041 - DEBUG - Taking top 8 variants by coverage in window 9:112966321-112966322
2012-10-07 18:53:12,233 - DEBUG - Taking top 8 variants by coverage in window 9:112992725-112992726
2012-10-07 18:53:12,245 - DEBUG - Taking top 8 variants by coverage in window 9:112992727-112992730
2012-10-07 18:53:12,415 - DEBUG - Taking top 8 variants by coverage in window 9:112992755-112992756
2012-10-07 18:53:13,861 - DEBUG - Read 99893 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 18:53:14,119 - DEBUG - Read 109075 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 18:53:14,393 - DEBUG - Read 125422 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 18:53:14,703 - DEBUG - Read 127015 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 18:53:14,996 - DEBUG - Read 119039 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 18:53:15,264 - DEBUG - Read 115001 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 18:53:15,539 - DEBUG - Read 120672 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 18:53:15,807 - DEBUG - Read 108646 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 18:53:16,072 - DEBUG - Read 105874 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 18:53:16,328 - DEBUG - Read 104751 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 18:53:16,607 - DEBUG - Read 117487 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 18:53:16,857 - DEBUG - Read 106949 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 18:53:17,117 - DEBUG - Read 108229 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 18:53:17,377 - DEBUG - Read 118210 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 18:53:17,660 - DEBUG - Read 126221 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 18:53:17,904 - DEBUG - Read 99114 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 18:53:18,173 - DEBUG - Read 122388 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 18:53:18,444 - DEBUG - Read 115371 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 18:53:18,682 - DEBUG - Read 102654 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 18:53:18,936 - DEBUG - Read 100154 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 18:53:19,053 - DEBUG - Detected 27746 variants in 99893 reads
2012-10-07 18:53:19,249 - DEBUG - Detected 39520 variants in 109075 reads
2012-10-07 18:53:19,509 - DEBUG - Detected 48424 variants in 125422 reads
2012-10-07 18:53:19,810 - DEBUG - Detected 55546 variants in 127015 reads
2012-10-07 18:53:20,161 - DEBUG - Detected 62330 variants in 119039 reads
2012-10-07 18:53:20,516 - DEBUG - Detected 69647 variants in 115001 reads
2012-10-07 18:53:20,916 - DEBUG - Detected 84339 variants in 120672 reads
2012-10-07 18:53:21,369 - DEBUG - Detected 91090 variants in 108646 reads
2012-10-07 18:53:21,847 - DEBUG - Detected 98168 variants in 105874 reads
2012-10-07 18:53:22,405 - DEBUG - Detected 104068 variants in 104751 reads
2012-10-07 18:53:22,984 - DEBUG - Detected 109329 variants in 117487 reads
2012-10-07 18:53:23,581 - DEBUG - Detected 113898 variants in 106949 reads
2012-10-07 18:53:24,200 - DEBUG - Detected 118254 variants in 108229 reads
2012-10-07 18:53:24,859 - DEBUG - Detected 123285 variants in 118210 reads
2012-10-07 18:53:25,604 - DEBUG - Detected 131087 variants in 126221 reads
2012-10-07 18:53:26,311 - DEBUG - Detected 135709 variants in 99114 reads
2012-10-07 18:53:27,054 - DEBUG - Detected 140183 variants in 122388 reads
2012-10-07 18:53:27,819 - DEBUG - Detected 144256 variants in 115371 reads
2012-10-07 18:53:28,666 - DEBUG - Detected 148874 variants in 102654 reads
2012-10-07 18:53:29,459 - DEBUG - Detected 153060 variants in 100154 reads
2012-10-07 18:53:30,679 - DEBUG - Taking top 8 variants by coverage in window 9:113000686-113000687
2012-10-07 18:53:30,724 - DEBUG - Taking top 8 variants by coverage in window 9:113000710-113000711
2012-10-07 18:53:31,499 - DEBUG - Taking top 8 variants by coverage in window 9:113009161-113009162
2012-10-07 18:53:31,640 - DEBUG - Taking top 8 variants by coverage in window 9:113010741-113010742
2012-10-07 18:53:31,992 - DEBUG - Taking top 8 variants by coverage in window 9:113014440-113014441
2012-10-07 18:53:32,036 - DEBUG - Taking top 8 variants by coverage in window 9:113014624-113014625
2012-10-07 18:53:33,091 - DEBUG - Taking top 8 variants by coverage in window 9:113028206-113028207
2012-10-07 18:53:33,129 - DEBUG - Taking top 8 variants by coverage in window 9:113028208-113028209
2012-10-07 18:53:33,355 - DEBUG - Taking top 8 variants by coverage in window 9:113029353-113029354
2012-10-07 18:53:33,704 - DEBUG - Taking top 8 variants by coverage in window 9:113030576-113030577
2012-10-07 18:53:34,268 - DEBUG - Taking top 8 variants by coverage in window 9:113035277-113035278
2012-10-07 18:53:34,585 - DEBUG - Taking top 8 variants by coverage in window 9:113035570-113035583
2012-10-07 18:53:34,689 - DEBUG - Taking top 8 variants by coverage in window 9:113036690-113036691
2012-10-07 18:53:34,773 - DEBUG - Taking top 8 variants by coverage in window 9:113037233-113037234
2012-10-07 18:53:35,106 - DEBUG - Taking top 8 variants by coverage in window 9:113041608-113041609
2012-10-07 18:53:36,328 - DEBUG - Taking top 8 variants by coverage in window 9:113055192-113055193
2012-10-07 18:53:36,435 - DEBUG - Taking top 8 variants by coverage in window 9:113055574-113055575
2012-10-07 18:53:36,447 - DEBUG - Taking top 8 variants by coverage in window 9:113055575-113055576
2012-10-07 18:53:36,911 - DEBUG - Taking top 8 variants by coverage in window 9:113061479-113061490
2012-10-07 18:53:36,984 - DEBUG - Taking top 8 variants by coverage in window 9:113061501-113061502
2012-10-07 18:53:37,112 - DEBUG - Taking top 8 variants by coverage in window 9:113061543-113061544
2012-10-07 18:53:37,149 - DEBUG - Taking top 8 variants by coverage in window 9:113061546-113061547
2012-10-07 18:53:37,641 - DEBUG - Taking top 8 variants by coverage in window 9:113067967-113067968
2012-10-07 18:53:38,133 - DEBUG - Taking top 8 variants by coverage in window 9:113068981-113068982
2012-10-07 18:53:39,012 - DEBUG - Taking top 8 variants by coverage in window 9:113078544-113078545
2012-10-07 18:53:39,106 - DEBUG - Taking top 8 variants by coverage in window 9:113079339-113079341
2012-10-07 18:53:39,276 - DEBUG - Taking top 8 variants by coverage in window 9:113080894-113080895
2012-10-07 18:53:39,539 - DEBUG - Taking top 8 variants by coverage in window 9:113085088-113085089
2012-10-07 18:53:39,557 - DEBUG - Taking top 8 variants by coverage in window 9:113085103-113085104
2012-10-07 18:53:39,978 - DEBUG - Taking top 8 variants by coverage in window 9:113090099-113090100
2012-10-07 18:53:40,048 - DEBUG - Taking top 8 variants by coverage in window 9:113092372-113092373
2012-10-07 18:53:40,072 - DEBUG - Taking top 8 variants by coverage in window 9:113092392-113092393
2012-10-07 18:53:40,250 - DEBUG - Taking top 8 variants by coverage in window 9:113095541-113095557
2012-10-07 18:53:41,067 - DEBUG - Taking top 8 variants by coverage in window 9:113103204-113103205
2012-10-07 18:53:41,264 - DEBUG - Taking top 8 variants by coverage in window 9:113105579-113105580
2012-10-07 18:53:42,262 - DEBUG - Taking top 8 variants by coverage in window 9:113118293-113118294
2012-10-07 18:53:42,287 - DEBUG - Taking top 8 variants by coverage in window 9:113118294-113118296
2012-10-07 18:53:42,818 - DEBUG - Taking top 8 variants by coverage in window 9:113121575-113121587
2012-10-07 18:53:43,190 - DEBUG - Taking top 8 variants by coverage in window 9:113125904-113125912
2012-10-07 18:53:44,228 - DEBUG - Taking top 8 variants by coverage in window 9:113138858-113138859
2012-10-07 18:53:44,511 - DEBUG - Taking top 8 variants by coverage in window 9:113139019-113139022
2012-10-07 18:53:44,554 - DEBUG - Taking top 8 variants by coverage in window 9:113139023-113139027
2012-10-07 18:53:44,712 - DEBUG - Taking top 8 variants by coverage in window 9:113139074-113139075
2012-10-07 18:53:44,803 - DEBUG - Taking top 8 variants by coverage in window 9:113139086-113139088
2012-10-07 18:53:45,057 - DEBUG - Taking top 8 variants by coverage in window 9:113139123-113139124
2012-10-07 18:53:45,284 - DEBUG - Taking top 8 variants by coverage in window 9:113139348-113139349
2012-10-07 18:53:46,691 - DEBUG - Taking top 8 variants by coverage in window 9:113155494-113155495
2012-10-07 18:53:47,548 - DEBUG - Taking top 8 variants by coverage in window 9:113164744-113164747
2012-10-07 18:53:47,582 - DEBUG - Taking top 8 variants by coverage in window 9:113164759-113164760
2012-10-07 18:53:47,712 - DEBUG - Taking top 8 variants by coverage in window 9:113166373-113166391
2012-10-07 18:53:47,998 - DEBUG - Taking top 8 variants by coverage in window 9:113166797-113166798
2012-10-07 18:53:48,096 - DEBUG - Taking top 8 variants by coverage in window 9:113166871-113166872
2012-10-07 18:53:48,574 - DEBUG - Taking top 8 variants by coverage in window 9:113172319-113172320
2012-10-07 18:53:51,492 - DEBUG - Taking top 8 variants by coverage in window 9:113196502-113196503
2012-10-07 18:53:51,661 - DEBUG - Taking top 8 variants by coverage in window 9:113197721-113197722
2012-10-07 18:53:51,805 - DEBUG - Taking top 8 variants by coverage in window 9:113198651-113198666
2012-10-07 18:53:51,830 - DEBUG - Taking top 8 variants by coverage in window 9:113198674-113198677
2012-10-07 18:53:51,916 - DEBUG - Taking top 8 variants by coverage in window 9:113199523-113199524
2012-10-07 18:53:52,638 - DEBUG - Taking top 8 variants by coverage in window 9:113211473-113211474
2012-10-07 18:53:52,692 - DEBUG - Taking top 8 variants by coverage in window 9:113211540-113211541
2012-10-07 18:53:53,491 - DEBUG - Taking top 8 variants by coverage in window 9:113221181-113221182
2012-10-07 18:53:53,634 - DEBUG - Taking top 8 variants by coverage in window 9:113221813-113221814
2012-10-07 18:53:54,706 - DEBUG - Taking top 8 variants by coverage in window 9:113236971-113236975
2012-10-07 18:53:55,723 - DEBUG - Taking top 8 variants by coverage in window 9:113251562-113251563
2012-10-07 18:53:56,203 - DEBUG - Taking top 8 variants by coverage in window 9:113261664-113261665
2012-10-07 18:53:56,433 - DEBUG - Taking top 8 variants by coverage in window 9:113263707-113263708
2012-10-07 18:53:56,458 - DEBUG - Taking top 8 variants by coverage in window 9:113263844-113263845
2012-10-07 18:53:56,477 - DEBUG - Taking top 8 variants by coverage in window 9:113263853-113263854
2012-10-07 18:53:56,546 - DEBUG - Taking top 8 variants by coverage in window 9:113263921-113263922
2012-10-07 18:53:56,812 - DEBUG - Taking top 8 variants by coverage in window 9:113266218-113266219
2012-10-07 18:53:57,196 - DEBUG - Taking top 8 variants by coverage in window 9:113268973-113268976
2012-10-07 18:53:57,421 - DEBUG - Taking top 8 variants by coverage in window 9:113270247-113270248
2012-10-07 18:53:57,584 - DEBUG - Taking top 8 variants by coverage in window 9:113276469-113276470
2012-10-07 18:53:58,133 - DEBUG - Taking top 8 variants by coverage in window 9:113283245-113283246
2012-10-07 18:53:58,144 - DEBUG - Taking top 8 variants by coverage in window 9:113283273-113283274
2012-10-07 18:53:58,351 - DEBUG - Taking top 8 variants by coverage in window 9:113285039-113285040
2012-10-07 18:53:58,644 - DEBUG - Taking top 8 variants by coverage in window 9:113289115-113289118
2012-10-07 18:53:58,666 - DEBUG - Taking top 8 variants by coverage in window 9:113289148-113289149
2012-10-07 18:53:58,699 - DEBUG - Taking top 8 variants by coverage in window 9:113289185-113289186
2012-10-07 18:53:58,706 - DEBUG - Taking top 8 variants by coverage in window 9:113289186-113289188
2012-10-07 18:53:58,925 - DEBUG - Taking top 8 variants by coverage in window 9:113292004-113292005
2012-10-07 18:53:59,089 - DEBUG - Taking top 8 variants by coverage in window 9:113293895-113293900
2012-10-07 18:53:59,302 - DEBUG - Taking top 8 variants by coverage in window 9:113295733-113295734
2012-10-07 18:53:59,522 - DEBUG - Taking top 8 variants by coverage in window 9:113295953-113295954
2012-10-07 18:53:59,978 - DEBUG - Taking top 8 variants by coverage in window 9:113299527-113299528
2012-10-07 18:54:00,136 - DEBUG - Taking top 8 variants by coverage in window 9:113301897-113301912
2012-10-07 18:54:00,822 - DEBUG - Taking top 8 variants by coverage in window 9:113304431-113304433
2012-10-07 18:54:00,958 - DEBUG - Taking top 8 variants by coverage in window 9:113304812-113304813
2012-10-07 18:54:00,982 - DEBUG - Taking top 8 variants by coverage in window 9:113304821-113304822
2012-10-07 18:54:01,098 - DEBUG - Taking top 8 variants by coverage in window 9:113305163-113305164
2012-10-07 18:54:01,372 - DEBUG - Taking top 8 variants by coverage in window 9:113305836-113305842
2012-10-07 18:54:01,776 - DEBUG - Taking top 8 variants by coverage in window 9:113308287-113308288
2012-10-07 18:54:02,795 - DEBUG - Taking top 8 variants by coverage in window 9:113322652-113322653
2012-10-07 18:54:03,824 - DEBUG - Taking top 8 variants by coverage in window 9:113334450-113334453
2012-10-07 18:54:03,869 - DEBUG - Taking top 8 variants by coverage in window 9:113335424-113335430
2012-10-07 18:54:04,884 - DEBUG - Taking top 8 variants by coverage in window 9:113344075-113344081
2012-10-07 18:54:05,076 - DEBUG - Taking top 8 variants by coverage in window 9:113345340-113345345
2012-10-07 18:54:05,288 - DEBUG - Taking top 8 variants by coverage in window 9:113345649-113345650
2012-10-07 18:54:05,306 - DEBUG - Taking top 8 variants by coverage in window 9:113345650-113345651
2012-10-07 18:54:05,384 - DEBUG - Taking top 8 variants by coverage in window 9:113346005-113346012
2012-10-07 18:54:06,113 - DEBUG - Taking top 8 variants by coverage in window 9:113351590-113351599
2012-10-07 18:54:06,175 - DEBUG - Taking top 8 variants by coverage in window 9:113351624-113351625
2012-10-07 18:54:06,188 - DEBUG - Taking top 8 variants by coverage in window 9:113351625-113351627
2012-10-07 18:54:06,232 - DEBUG - Taking top 8 variants by coverage in window 9:113351632-113351641
2012-10-07 18:54:06,660 - DEBUG - Taking top 8 variants by coverage in window 9:113353607-113353608
2012-10-07 18:54:06,683 - DEBUG - Taking top 8 variants by coverage in window 9:113353610-113353611
2012-10-07 18:54:06,858 - DEBUG - Taking top 8 variants by coverage in window 9:113354269-113354271
2012-10-07 18:54:07,032 - DEBUG - Taking top 8 variants by coverage in window 9:113354285-113354286
2012-10-07 18:54:07,214 - DEBUG - Taking top 8 variants by coverage in window 9:113355008-113355009
2012-10-07 18:54:08,104 - DEBUG - Taking top 8 variants by coverage in window 9:113361407-113361414
2012-10-07 18:54:08,126 - DEBUG - Taking top 8 variants by coverage in window 9:113361479-113361480
2012-10-07 18:54:08,363 - DEBUG - Taking top 8 variants by coverage in window 9:113363520-113363521
2012-10-07 18:54:08,929 - DEBUG - Taking top 8 variants by coverage in window 9:113368027-113368028
2012-10-07 18:54:09,946 - DEBUG - Taking top 8 variants by coverage in window 9:113374972-113374973
2012-10-07 18:54:11,186 - DEBUG - Taking top 8 variants by coverage in window 9:113390354-113390356
2012-10-07 18:54:11,317 - DEBUG - Taking top 8 variants by coverage in window 9:113390491-113390492
2012-10-07 18:54:11,522 - DEBUG - Taking top 8 variants by coverage in window 9:113391659-113391667
2012-10-07 18:54:11,939 - DEBUG - Taking top 8 variants by coverage in window 9:113391763-113391765
2012-10-07 18:54:12,363 - DEBUG - Taking top 8 variants by coverage in window 9:113391958-113391960
2012-10-07 18:54:12,486 - DEBUG - Taking top 8 variants by coverage in window 9:113391976-113391977
2012-10-07 18:54:13,125 - DEBUG - Taking top 8 variants by coverage in window 9:113392436-113392437
2012-10-07 18:54:13,301 - DEBUG - Taking top 8 variants by coverage in window 9:113392510-113392511
2012-10-07 18:54:13,648 - DEBUG - Taking top 8 variants by coverage in window 9:113396533-113396539
2012-10-07 18:54:14,100 - DEBUG - Taking top 8 variants by coverage in window 9:113400719-113400720
2012-10-07 18:54:14,648 - DEBUG - Taking top 8 variants by coverage in window 9:113403434-113403435
2012-10-07 18:54:15,815 - DEBUG - Taking top 8 variants by coverage in window 9:113407971-113407975
2012-10-07 18:54:17,558 - DEBUG - Taking top 8 variants by coverage in window 9:113422804-113422810
2012-10-07 18:54:17,638 - DEBUG - Taking top 8 variants by coverage in window 9:113423841-113423842
2012-10-07 18:54:17,979 - DEBUG - Taking top 8 variants by coverage in window 9:113427331-113427338
2012-10-07 18:54:19,040 - DEBUG - Taking top 8 variants by coverage in window 9:113436396-113436397
2012-10-07 18:54:19,771 - DEBUG - Taking top 8 variants by coverage in window 9:113439487-113439497
2012-10-07 18:54:20,336 - DEBUG - Taking top 8 variants by coverage in window 9:113443444-113443455
2012-10-07 18:54:21,169 - DEBUG - Taking top 8 variants by coverage in window 9:113455975-113455976
2012-10-07 18:54:21,312 - DEBUG - Taking top 8 variants by coverage in window 9:113457999-113458000
2012-10-07 18:54:22,670 - DEBUG - Taking top 8 variants by coverage in window 9:113468618-113468629
2012-10-07 18:54:23,118 - DEBUG - Taking top 8 variants by coverage in window 9:113472524-113472526
2012-10-07 18:54:23,818 - DEBUG - Taking top 8 variants by coverage in window 9:113475364-113475365
2012-10-07 18:54:24,304 - DEBUG - Taking top 8 variants by coverage in window 9:113479496-113479498
2012-10-07 18:54:24,387 - DEBUG - Taking top 8 variants by coverage in window 9:113479680-113479687
2012-10-07 18:54:24,980 - DEBUG - Taking top 8 variants by coverage in window 9:113486636-113486637
2012-10-07 18:54:25,203 - DEBUG - Taking top 8 variants by coverage in window 9:113488928-113488929
2012-10-07 18:54:25,223 - DEBUG - Taking top 8 variants by coverage in window 9:113488945-113488946
2012-10-07 18:54:25,657 - DEBUG - Taking top 8 variants by coverage in window 9:113491088-113491089
2012-10-07 18:54:26,044 - DEBUG - Taking top 8 variants by coverage in window 9:113493318-113493319
2012-10-07 18:54:26,363 - DEBUG - Taking top 8 variants by coverage in window 9:113494898-113494913
2012-10-07 18:54:26,907 - DEBUG - Taking top 8 variants by coverage in window 9:113498854-113498856
2012-10-07 18:54:26,928 - DEBUG - Taking top 8 variants by coverage in window 9:113498861-113498862
2012-10-07 18:54:27,628 - DEBUG - Taking top 8 variants by coverage in window 9:113510053-113510054
2012-10-07 18:54:27,671 - DEBUG - Taking top 8 variants by coverage in window 9:113510125-113510126
2012-10-07 18:54:27,727 - DEBUG - Taking top 8 variants by coverage in window 9:113510955-113510956
2012-10-07 18:54:28,113 - DEBUG - Taking top 8 variants by coverage in window 9:113518653-113518654
2012-10-07 18:54:28,558 - DEBUG - Taking top 8 variants by coverage in window 9:113523416-113523417
2012-10-07 18:54:29,868 - DEBUG - Taking top 8 variants by coverage in window 9:113529859-113529860
2012-10-07 18:54:29,971 - DEBUG - Taking top 8 variants by coverage in window 9:113529894-113529895
2012-10-07 18:54:30,721 - DEBUG - Taking top 8 variants by coverage in window 9:113539410-113539411
2012-10-07 18:54:31,369 - DEBUG - Taking top 8 variants by coverage in window 9:113545023-113545024
2012-10-07 18:54:32,116 - DEBUG - Taking top 8 variants by coverage in window 9:113556746-113556749
2012-10-07 18:54:32,448 - DEBUG - Taking top 8 variants by coverage in window 9:113556854-113556862
2012-10-07 18:54:32,509 - DEBUG - Taking top 8 variants by coverage in window 9:113556867-113556871
2012-10-07 18:54:32,659 - DEBUG - Taking top 8 variants by coverage in window 9:113556889-113556895
2012-10-07 18:54:32,954 - DEBUG - Taking top 8 variants by coverage in window 9:113556965-113556971
2012-10-07 18:54:33,176 - DEBUG - Taking top 8 variants by coverage in window 9:113557059-113557069
2012-10-07 18:54:33,302 - DEBUG - Taking top 8 variants by coverage in window 9:113557091-113557098
2012-10-07 18:54:33,820 - DEBUG - Taking top 8 variants by coverage in window 9:113561353-113561354
2012-10-07 18:54:33,835 - DEBUG - Taking top 8 variants by coverage in window 9:113561357-113561358
2012-10-07 18:54:34,188 - DEBUG - Taking top 8 variants by coverage in window 9:113568415-113568416
2012-10-07 18:54:34,697 - DEBUG - Taking top 8 variants by coverage in window 9:113576866-113576867
2012-10-07 18:54:36,359 - DEBUG - Taking top 8 variants by coverage in window 9:113593995-113593996
2012-10-07 18:54:36,889 - DEBUG - Taking top 8 variants by coverage in window 9:113599942-113599943
2012-10-07 18:54:37,001 - DEBUG - Taking top 8 variants by coverage in window 9:113601020-113601021
2012-10-07 18:54:37,426 - DEBUG - Taking top 8 variants by coverage in window 9:113603893-113603894
2012-10-07 18:54:38,692 - DEBUG - Taking top 8 variants by coverage in window 9:113621484-113621487
2012-10-07 18:54:38,742 - DEBUG - Taking top 8 variants by coverage in window 9:113621570-113621572
2012-10-07 18:54:38,752 - DEBUG - Taking top 8 variants by coverage in window 9:113621580-113621581
2012-10-07 18:54:38,802 - DEBUG - Taking top 8 variants by coverage in window 9:113621837-113621838
2012-10-07 18:54:38,916 - DEBUG - Taking top 8 variants by coverage in window 9:113622201-113622203
2012-10-07 18:54:39,441 - DEBUG - Taking top 8 variants by coverage in window 9:113625482-113625483
2012-10-07 18:54:39,517 - DEBUG - Taking top 8 variants by coverage in window 9:113625837-113625839
2012-10-07 18:54:39,927 - DEBUG - Taking top 8 variants by coverage in window 9:113626868-113626876
2012-10-07 18:54:40,379 - DEBUG - Taking top 8 variants by coverage in window 9:113632618-113632638
2012-10-07 18:54:40,620 - DEBUG - Taking top 8 variants by coverage in window 9:113634176-113634179
2012-10-07 18:54:40,657 - DEBUG - Taking top 8 variants by coverage in window 9:113634207-113634208
2012-10-07 18:54:41,233 - DEBUG - Taking top 8 variants by coverage in window 9:113643523-113643524
2012-10-07 18:54:41,364 - DEBUG - Taking top 8 variants by coverage in window 9:113645075-113645076
2012-10-07 18:54:41,418 - DEBUG - Taking top 8 variants by coverage in window 9:113647499-113647500
2012-10-07 18:54:41,678 - DEBUG - Taking top 8 variants by coverage in window 9:113653922-113653923
2012-10-07 18:54:41,981 - DEBUG - Taking top 8 variants by coverage in window 9:113664082-113664084
2012-10-07 18:54:42,326 - DEBUG - Taking top 8 variants by coverage in window 9:113671915-113671916
2012-10-07 18:54:42,438 - DEBUG - Taking top 8 variants by coverage in window 9:113674266-113674267
2012-10-07 18:54:42,503 - DEBUG - Taking top 8 variants by coverage in window 9:113675957-113675958
2012-10-07 18:54:42,511 - DEBUG - Taking top 8 variants by coverage in window 9:113675960-113675961
2012-10-07 18:54:42,605 - DEBUG - Taking top 8 variants by coverage in window 9:113678344-113678345
2012-10-07 18:54:42,708 - DEBUG - Taking top 8 variants by coverage in window 9:113679146-113679147
2012-10-07 18:54:43,311 - DEBUG - Taking top 8 variants by coverage in window 9:113689957-113689958
2012-10-07 18:54:44,138 - DEBUG - Taking top 8 variants by coverage in window 9:113707583-113707584
2012-10-07 18:54:44,501 - DEBUG - Taking top 8 variants by coverage in window 9:113712159-113712160
2012-10-07 18:54:44,883 - DEBUG - Taking top 8 variants by coverage in window 9:113718337-113718338
2012-10-07 18:54:44,940 - DEBUG - Taking top 8 variants by coverage in window 9:113718419-113718420
2012-10-07 18:54:45,307 - DEBUG - Taking top 8 variants by coverage in window 9:113726357-113726358
2012-10-07 18:54:45,722 - DEBUG - Taking top 8 variants by coverage in window 9:113735312-113735313
2012-10-07 18:54:45,804 - DEBUG - Taking top 8 variants by coverage in window 9:113735337-113735338
2012-10-07 18:54:45,898 - DEBUG - Taking top 8 variants by coverage in window 9:113737674-113737675
2012-10-07 18:54:45,913 - DEBUG - Taking top 8 variants by coverage in window 9:113737718-113737719
2012-10-07 18:54:46,333 - DEBUG - Taking top 8 variants by coverage in window 9:113748758-113748759
2012-10-07 18:54:46,681 - DEBUG - Taking top 8 variants by coverage in window 9:113764774-113764775
2012-10-07 18:54:47,223 - DEBUG - Taking top 8 variants by coverage in window 9:113779870-113779875
2012-10-07 18:54:47,300 - DEBUG - Taking top 8 variants by coverage in window 9:113781230-113781231
2012-10-07 18:54:47,753 - DEBUG - Taking top 8 variants by coverage in window 9:113792220-113792221
2012-10-07 18:54:47,791 - DEBUG - Taking top 8 variants by coverage in window 9:113792985-113792986
2012-10-07 18:54:48,169 - DEBUG - Taking top 8 variants by coverage in window 9:113800578-113800579
2012-10-07 18:54:48,465 - DEBUG - Taking top 8 variants by coverage in window 9:113803633-113803641
2012-10-07 18:54:49,573 - DEBUG - Taking top 8 variants by coverage in window 9:113806136-113806137
2012-10-07 18:54:49,922 - DEBUG - Taking top 8 variants by coverage in window 9:113811837-113811838
2012-10-07 18:54:50,025 - DEBUG - Taking top 8 variants by coverage in window 9:113813714-113813716
2012-10-07 18:54:51,080 - DEBUG - Taking top 8 variants by coverage in window 9:113827058-113827059
2012-10-07 18:54:51,092 - DEBUG - Taking top 8 variants by coverage in window 9:113827059-113827060
2012-10-07 18:54:51,861 - DEBUG - Taking top 8 variants by coverage in window 9:113837241-113837243
2012-10-07 18:54:52,288 - DEBUG - Taking top 8 variants by coverage in window 9:113843389-113843391
2012-10-07 18:54:52,332 - DEBUG - Taking top 8 variants by coverage in window 9:113843399-113843400
2012-10-07 18:54:52,569 - DEBUG - Taking top 8 variants by coverage in window 9:113846699-113846700
2012-10-07 18:54:52,996 - DEBUG - Taking top 8 variants by coverage in window 9:113855791-113855792
2012-10-07 18:54:53,347 - DEBUG - Taking top 8 variants by coverage in window 9:113862738-113862739
2012-10-07 18:54:54,162 - DEBUG - Taking top 8 variants by coverage in window 9:113884003-113884005
2012-10-07 18:54:54,383 - DEBUG - Taking top 8 variants by coverage in window 9:113885577-113885578
2012-10-07 18:54:56,045 - DEBUG - Taking top 8 variants by coverage in window 9:113906735-113906738
2012-10-07 18:54:56,227 - DEBUG - Taking top 8 variants by coverage in window 9:113908145-113908146
2012-10-07 18:54:56,438 - DEBUG - Taking top 8 variants by coverage in window 9:113909759-113909761
2012-10-07 18:54:56,473 - DEBUG - Taking top 8 variants by coverage in window 9:113909945-113909946
2012-10-07 18:54:56,521 - DEBUG - Taking top 8 variants by coverage in window 9:113910420-113910421
2012-10-07 18:54:56,558 - DEBUG - Taking top 8 variants by coverage in window 9:113910693-113910694
2012-10-07 18:54:56,586 - DEBUG - Taking top 8 variants by coverage in window 9:113910721-113910722
2012-10-07 18:54:56,939 - DEBUG - Taking top 8 variants by coverage in window 9:113915069-113915071
2012-10-07 18:54:56,987 - DEBUG - Taking top 8 variants by coverage in window 9:113915119-113915120
2012-10-07 18:54:57,084 - DEBUG - Taking top 8 variants by coverage in window 9:113915463-113915464
2012-10-07 18:54:57,493 - DEBUG - Taking top 8 variants by coverage in window 9:113918834-113918835
2012-10-07 18:54:57,783 - DEBUG - Taking top 8 variants by coverage in window 9:113920627-113920628
2012-10-07 18:54:57,813 - DEBUG - Taking top 8 variants by coverage in window 9:113921771-113921772
2012-10-07 18:54:57,935 - DEBUG - Taking top 8 variants by coverage in window 9:113923286-113923292
2012-10-07 18:54:58,335 - DEBUG - Taking top 8 variants by coverage in window 9:113927707-113927708
2012-10-07 18:54:58,418 - DEBUG - Taking top 8 variants by coverage in window 9:113928344-113928345
2012-10-07 18:54:59,025 - DEBUG - Taking top 8 variants by coverage in window 9:113935977-113935980
2012-10-07 18:54:59,740 - DEBUG - Taking top 8 variants by coverage in window 9:113942242-113942243
2012-10-07 18:54:59,850 - DEBUG - Taking top 8 variants by coverage in window 9:113943114-113943115
2012-10-07 18:54:59,890 - DEBUG - Taking top 8 variants by coverage in window 9:113943454-113943455
2012-10-07 18:54:59,994 - DEBUG - Taking top 8 variants by coverage in window 9:113944375-113944376
2012-10-07 18:55:00,021 - DEBUG - Taking top 8 variants by coverage in window 9:113944825-113944826
2012-10-07 18:55:00,307 - DEBUG - Taking top 8 variants by coverage in window 9:113946145-113946146
2012-10-07 18:55:00,355 - DEBUG - Taking top 8 variants by coverage in window 9:113946390-113946392
2012-10-07 18:55:00,675 - DEBUG - Taking top 8 variants by coverage in window 9:113949604-113949607
2012-10-07 18:55:00,868 - DEBUG - Taking top 8 variants by coverage in window 9:113952805-113952806
2012-10-07 18:55:01,137 - DEBUG - Taking top 8 variants by coverage in window 9:113953201-113953210
2012-10-07 18:55:01,457 - DEBUG - Taking top 8 variants by coverage in window 9:113956473-113956476
2012-10-07 18:55:01,513 - DEBUG - Taking top 8 variants by coverage in window 9:113956713-113956715
2012-10-07 18:55:01,665 - DEBUG - Taking top 8 variants by coverage in window 9:113958151-113958152
2012-10-07 18:55:01,699 - DEBUG - Taking top 8 variants by coverage in window 9:113958166-113958167
2012-10-07 18:55:01,891 - DEBUG - Taking top 8 variants by coverage in window 9:113959806-113959808
2012-10-07 18:55:01,953 - DEBUG - Taking top 8 variants by coverage in window 9:113960417-113960425
2012-10-07 18:55:02,139 - DEBUG - Taking top 8 variants by coverage in window 9:113962012-113962013
2012-10-07 18:55:02,243 - DEBUG - Taking top 8 variants by coverage in window 9:113963504-113963506
2012-10-07 18:55:02,258 - DEBUG - Taking top 8 variants by coverage in window 9:113963510-113963511
2012-10-07 18:55:02,464 - DEBUG - Taking top 8 variants by coverage in window 9:113967122-113967123
2012-10-07 18:55:02,640 - DEBUG - Taking top 8 variants by coverage in window 9:113971950-113971951
2012-10-07 18:55:03,585 - DEBUG - Taking top 8 variants by coverage in window 9:113981234-113981235
2012-10-07 18:55:03,930 - DEBUG - Taking top 8 variants by coverage in window 9:113984966-113984967
2012-10-07 18:55:04,291 - DEBUG - Taking top 8 variants by coverage in window 9:113990126-113990127
2012-10-07 18:55:04,761 - DEBUG - Taking top 8 variants by coverage in window 9:113994262-113994263
2012-10-07 18:55:06,222 - DEBUG - Read 90762 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 18:55:06,521 - DEBUG - Read 100266 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 18:55:06,795 - DEBUG - Read 112628 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 18:55:07,108 - DEBUG - Read 114230 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 18:55:07,402 - DEBUG - Read 106912 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 18:55:07,664 - DEBUG - Read 103367 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 18:55:07,935 - DEBUG - Read 108202 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 18:55:08,208 - DEBUG - Read 99657 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 18:55:08,461 - DEBUG - Read 95786 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 18:55:08,726 - DEBUG - Read 93864 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 18:55:09,005 - DEBUG - Read 105776 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 18:55:09,270 - DEBUG - Read 96796 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 18:55:09,528 - DEBUG - Read 97888 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 18:55:09,795 - DEBUG - Read 108429 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 18:55:10,081 - DEBUG - Read 114813 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 18:55:10,326 - DEBUG - Read 89343 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 18:55:10,596 - DEBUG - Read 111654 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 18:55:10,872 - DEBUG - Read 103535 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 18:55:11,112 - DEBUG - Read 94238 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 18:55:11,362 - DEBUG - Read 89867 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 18:55:11,493 - DEBUG - Detected 29268 variants in 90762 reads
2012-10-07 18:55:11,707 - DEBUG - Detected 43017 variants in 100266 reads
2012-10-07 18:55:12,002 - DEBUG - Detected 54175 variants in 112628 reads
2012-10-07 18:55:12,352 - DEBUG - Detected 63718 variants in 114230 reads
2012-10-07 18:55:12,738 - DEBUG - Detected 70668 variants in 106912 reads
2012-10-07 18:55:13,144 - DEBUG - Detected 77655 variants in 103367 reads
2012-10-07 18:55:13,651 - DEBUG - Detected 91126 variants in 108202 reads
2012-10-07 18:55:14,180 - DEBUG - Detected 97414 variants in 99657 reads
2012-10-07 18:55:14,740 - DEBUG - Detected 104020 variants in 95786 reads
2012-10-07 18:55:15,340 - DEBUG - Detected 110082 variants in 93864 reads
2012-10-07 18:55:15,982 - DEBUG - Detected 115274 variants in 105776 reads
2012-10-07 18:55:16,699 - DEBUG - Detected 121605 variants in 96796 reads
2012-10-07 18:55:17,392 - DEBUG - Detected 126331 variants in 97888 reads
2012-10-07 18:55:18,140 - DEBUG - Detected 131824 variants in 108429 reads
2012-10-07 18:55:18,929 - DEBUG - Detected 140015 variants in 114813 reads
2012-10-07 18:55:19,708 - DEBUG - Detected 144201 variants in 89343 reads
2012-10-07 18:55:20,597 - DEBUG - Detected 149096 variants in 111654 reads
2012-10-07 18:55:21,395 - DEBUG - Detected 153277 variants in 103535 reads
2012-10-07 18:55:22,218 - DEBUG - Detected 158430 variants in 94238 reads
2012-10-07 18:55:22,997 - DEBUG - Detected 162787 variants in 89867 reads
2012-10-07 18:55:24,294 - DEBUG - Taking top 8 variants by coverage in window 9:114001344-114001345
2012-10-07 18:55:24,372 - DEBUG - Taking top 8 variants by coverage in window 9:114001826-114001827
2012-10-07 18:55:24,974 - DEBUG - Taking top 8 variants by coverage in window 9:114008314-114008321
2012-10-07 18:55:25,466 - DEBUG - Taking top 8 variants by coverage in window 9:114009014-114009015
2012-10-07 18:55:25,487 - DEBUG - Taking top 8 variants by coverage in window 9:114009021-114009022
2012-10-07 18:55:25,683 - DEBUG - Taking top 8 variants by coverage in window 9:114010676-114010677
2012-10-07 18:55:25,761 - DEBUG - Taking top 8 variants by coverage in window 9:114018799-114018800
2012-10-07 18:55:26,125 - DEBUG - Taking top 8 variants by coverage in window 9:114022156-114022157
2012-10-07 18:55:26,138 - DEBUG - Taking top 8 variants by coverage in window 9:114022196-114022197
2012-10-07 18:55:27,204 - DEBUG - Taking top 8 variants by coverage in window 9:114034138-114034139
2012-10-07 18:55:27,224 - DEBUG - Taking top 8 variants by coverage in window 9:114034209-114034213
2012-10-07 18:55:27,565 - DEBUG - Taking top 8 variants by coverage in window 9:114037191-114037213
2012-10-07 18:55:27,888 - DEBUG - Taking top 8 variants by coverage in window 9:114039275-114039279
2012-10-07 18:55:29,961 - DEBUG - Taking top 8 variants by coverage in window 9:114077338-114077342
2012-10-07 18:55:30,564 - DEBUG - Taking top 8 variants by coverage in window 9:114096959-114096965
2012-10-07 18:55:31,937 - DEBUG - Taking top 8 variants by coverage in window 9:114120038-114120039
2012-10-07 18:55:32,483 - DEBUG - Taking top 8 variants by coverage in window 9:114128162-114128163
2012-10-07 18:55:32,549 - DEBUG - Taking top 8 variants by coverage in window 9:114134603-114134609
2012-10-07 18:55:32,712 - DEBUG - Taking top 8 variants by coverage in window 9:114138195-114138205
2012-10-07 18:55:33,969 - DEBUG - Taking top 8 variants by coverage in window 9:114156028-114156033
2012-10-07 18:55:34,803 - DEBUG - Taking top 8 variants by coverage in window 9:114174766-114174767
2012-10-07 18:55:34,920 - DEBUG - Taking top 8 variants by coverage in window 9:114175654-114175659
2012-10-07 18:55:35,169 - DEBUG - Taking top 8 variants by coverage in window 9:114175684-114175686
2012-10-07 18:55:35,363 - DEBUG - Taking top 8 variants by coverage in window 9:114176924-114176925
2012-10-07 18:55:37,002 - DEBUG - Taking top 8 variants by coverage in window 9:114203947-114203949
2012-10-07 18:55:39,932 - DEBUG - Taking top 8 variants by coverage in window 9:114249617-114249618
2012-10-07 18:55:40,228 - DEBUG - Taking top 8 variants by coverage in window 9:114254871-114254883
2012-10-07 18:55:41,140 - DEBUG - Taking top 8 variants by coverage in window 9:114271629-114271630
2012-10-07 18:55:41,243 - DEBUG - Taking top 8 variants by coverage in window 9:114272303-114272304
2012-10-07 18:55:42,041 - DEBUG - Taking top 8 variants by coverage in window 9:114281877-114281878
2012-10-07 18:55:43,279 - DEBUG - Taking top 8 variants by coverage in window 9:114294285-114294286
2012-10-07 18:55:43,287 - DEBUG - Taking top 8 variants by coverage in window 9:114294306-114294307
2012-10-07 18:55:43,417 - DEBUG - Taking top 8 variants by coverage in window 9:114295933-114295934
2012-10-07 18:55:43,853 - DEBUG - Taking top 8 variants by coverage in window 9:114301597-114301601
2012-10-07 18:55:44,478 - DEBUG - Taking top 8 variants by coverage in window 9:114309380-114309381
2012-10-07 18:55:44,941 - DEBUG - Taking top 8 variants by coverage in window 9:114316547-114316549
2012-10-07 18:55:45,541 - DEBUG - Taking top 8 variants by coverage in window 9:114325309-114325310
2012-10-07 18:55:45,856 - DEBUG - Taking top 8 variants by coverage in window 9:114329221-114329222
2012-10-07 18:55:46,154 - DEBUG - Taking top 8 variants by coverage in window 9:114333451-114333459
2012-10-07 18:55:46,719 - DEBUG - Taking top 8 variants by coverage in window 9:114337355-114337356
2012-10-07 18:55:47,134 - DEBUG - Taking top 8 variants by coverage in window 9:114341102-114341114
2012-10-07 18:55:47,142 - DEBUG - Taking top 8 variants by coverage in window 9:114341126-114341127
2012-10-07 18:55:47,681 - DEBUG - Taking top 8 variants by coverage in window 9:114348165-114348166
2012-10-07 18:55:47,746 - DEBUG - Taking top 8 variants by coverage in window 9:114349129-114349130
2012-10-07 18:55:47,852 - DEBUG - Taking top 8 variants by coverage in window 9:114350160-114350161
2012-10-07 18:55:47,917 - DEBUG - Taking top 8 variants by coverage in window 9:114350448-114350449
2012-10-07 18:55:48,598 - DEBUG - Taking top 8 variants by coverage in window 9:114357948-114357951
2012-10-07 18:55:49,348 - DEBUG - Taking top 8 variants by coverage in window 9:114365275-114365276
2012-10-07 18:55:49,510 - DEBUG - Taking top 8 variants by coverage in window 9:114368047-114368048
2012-10-07 18:55:50,140 - DEBUG - Taking top 8 variants by coverage in window 9:114374107-114374110
2012-10-07 18:55:50,515 - DEBUG - Taking top 8 variants by coverage in window 9:114378270-114378273
2012-10-07 18:55:51,026 - DEBUG - Taking top 8 variants by coverage in window 9:114383844-114383845
2012-10-07 18:55:51,098 - DEBUG - Taking top 8 variants by coverage in window 9:114384547-114384548
2012-10-07 18:55:51,363 - DEBUG - Taking top 8 variants by coverage in window 9:114386598-114386601
2012-10-07 18:55:51,666 - DEBUG - Taking top 8 variants by coverage in window 9:114388681-114388682
2012-10-07 18:55:51,740 - DEBUG - Taking top 8 variants by coverage in window 9:114389730-114389741
2012-10-07 18:55:52,037 - DEBUG - Taking top 8 variants by coverage in window 9:114390286-114390287
2012-10-07 18:55:52,048 - DEBUG - Taking top 8 variants by coverage in window 9:114390290-114390291
2012-10-07 18:55:52,067 - DEBUG - Taking top 8 variants by coverage in window 9:114390455-114390456
2012-10-07 18:55:52,584 - DEBUG - Taking top 8 variants by coverage in window 9:114394989-114394997
2012-10-07 18:55:53,975 - DEBUG - Taking top 8 variants by coverage in window 9:114398179-114398180
2012-10-07 18:55:54,212 - DEBUG - Taking top 8 variants by coverage in window 9:114400106-114400107
2012-10-07 18:55:54,258 - DEBUG - Taking top 8 variants by coverage in window 9:114400216-114400217
2012-10-07 18:55:54,528 - DEBUG - Taking top 8 variants by coverage in window 9:114403845-114403846
2012-10-07 18:55:55,289 - DEBUG - Taking top 8 variants by coverage in window 9:114411774-114411775
2012-10-07 18:55:55,716 - DEBUG - Taking top 8 variants by coverage in window 9:114416791-114416792
2012-10-07 18:55:56,298 - DEBUG - Taking top 8 variants by coverage in window 9:114426336-114426345
2012-10-07 18:55:56,731 - DEBUG - Taking top 8 variants by coverage in window 9:114430212-114430213
2012-10-07 18:55:57,090 - DEBUG - Taking top 8 variants by coverage in window 9:114433743-114433744
2012-10-07 18:55:57,114 - DEBUG - Taking top 8 variants by coverage in window 9:114433764-114433765
2012-10-07 18:55:57,642 - DEBUG - Taking top 8 variants by coverage in window 9:114438477-114438486
2012-10-07 18:55:57,715 - DEBUG - Taking top 8 variants by coverage in window 9:114438566-114438569
2012-10-07 18:55:57,978 - DEBUG - Taking top 8 variants by coverage in window 9:114439631-114439632
2012-10-07 18:55:58,069 - DEBUG - Taking top 8 variants by coverage in window 9:114439637-114439638
2012-10-07 18:55:58,304 - DEBUG - Taking top 8 variants by coverage in window 9:114440449-114440451
2012-10-07 18:55:58,575 - DEBUG - Taking top 8 variants by coverage in window 9:114442596-114442597
2012-10-07 18:55:58,594 - DEBUG - Taking top 8 variants by coverage in window 9:114442775-114442776
2012-10-07 18:55:58,611 - DEBUG - Taking top 8 variants by coverage in window 9:114442793-114442794
2012-10-07 18:55:58,845 - DEBUG - Taking top 8 variants by coverage in window 9:114445664-114445665
2012-10-07 18:55:59,016 - DEBUG - Taking top 8 variants by coverage in window 9:114448594-114448597
2012-10-07 18:55:59,066 - DEBUG - Taking top 8 variants by coverage in window 9:114448669-114448670
2012-10-07 18:55:59,364 - DEBUG - Taking top 8 variants by coverage in window 9:114451184-114451185
2012-10-07 18:55:59,404 - DEBUG - Taking top 8 variants by coverage in window 9:114451200-114451204
2012-10-07 18:55:59,927 - DEBUG - Taking top 8 variants by coverage in window 9:114454416-114454419
2012-10-07 18:56:00,690 - DEBUG - Taking top 8 variants by coverage in window 9:114465344-114465346
2012-10-07 18:56:01,358 - DEBUG - Taking top 8 variants by coverage in window 9:114475416-114475417
2012-10-07 18:56:01,423 - DEBUG - Taking top 8 variants by coverage in window 9:114477075-114477084
2012-10-07 18:56:01,461 - DEBUG - Taking top 8 variants by coverage in window 9:114477087-114477088
2012-10-07 18:56:01,541 - DEBUG - Taking top 8 variants by coverage in window 9:114477687-114477688
2012-10-07 18:56:01,582 - DEBUG - Taking top 8 variants by coverage in window 9:114477878-114477879
2012-10-07 18:56:01,833 - DEBUG - Taking top 8 variants by coverage in window 9:114480536-114480537
2012-10-07 18:56:02,551 - DEBUG - Taking top 8 variants by coverage in window 9:114487392-114487393
2012-10-07 18:56:02,635 - DEBUG - Taking top 8 variants by coverage in window 9:114489090-114489091
2012-10-07 18:56:02,698 - DEBUG - Taking top 8 variants by coverage in window 9:114489526-114489527
2012-10-07 18:56:02,748 - DEBUG - Taking top 8 variants by coverage in window 9:114489910-114489911
2012-10-07 18:56:03,029 - DEBUG - Taking top 8 variants by coverage in window 9:114493964-114493965
2012-10-07 18:56:03,337 - DEBUG - Taking top 8 variants by coverage in window 9:114498596-114498597
2012-10-07 18:56:03,356 - DEBUG - Taking top 8 variants by coverage in window 9:114498610-114498611
2012-10-07 18:56:03,601 - DEBUG - Taking top 8 variants by coverage in window 9:114501369-114501371
2012-10-07 18:56:04,105 - DEBUG - Taking top 8 variants by coverage in window 9:114514328-114514329
2012-10-07 18:56:04,797 - DEBUG - Taking top 8 variants by coverage in window 9:114522277-114522278
2012-10-07 18:56:05,987 - DEBUG - Taking top 8 variants by coverage in window 9:114536192-114536193
2012-10-07 18:56:06,270 - DEBUG - Taking top 8 variants by coverage in window 9:114542561-114542562
2012-10-07 18:56:06,335 - DEBUG - Taking top 8 variants by coverage in window 9:114543316-114543317
2012-10-07 18:56:06,378 - DEBUG - Taking top 8 variants by coverage in window 9:114543870-114543871
2012-10-07 18:56:06,529 - DEBUG - Taking top 8 variants by coverage in window 9:114545089-114545090
2012-10-07 18:56:06,537 - DEBUG - Taking top 8 variants by coverage in window 9:114545092-114545100
2012-10-07 18:56:06,643 - DEBUG - Taking top 8 variants by coverage in window 9:114545830-114545839
2012-10-07 18:56:06,736 - DEBUG - Taking top 8 variants by coverage in window 9:114545950-114545953
2012-10-07 18:56:06,765 - DEBUG - Taking top 8 variants by coverage in window 9:114546136-114546141
2012-10-07 18:56:06,786 - DEBUG - Taking top 8 variants by coverage in window 9:114546156-114546157
2012-10-07 18:56:07,603 - DEBUG - Taking top 8 variants by coverage in window 9:114557513-114557514
2012-10-07 18:56:07,640 - DEBUG - Taking top 8 variants by coverage in window 9:114557523-114557524
2012-10-07 18:56:08,157 - DEBUG - Taking top 8 variants by coverage in window 9:114561453-114561454
2012-10-07 18:56:09,091 - DEBUG - Taking top 8 variants by coverage in window 9:114574952-114574953
2012-10-07 18:56:09,108 - DEBUG - Taking top 8 variants by coverage in window 9:114574966-114574967
2012-10-07 18:56:09,443 - DEBUG - Taking top 8 variants by coverage in window 9:114577859-114577860
2012-10-07 18:56:09,466 - DEBUG - Taking top 8 variants by coverage in window 9:114577877-114577878
2012-10-07 18:56:10,244 - DEBUG - Taking top 8 variants by coverage in window 9:114585484-114585485
2012-10-07 18:56:10,331 - DEBUG - Taking top 8 variants by coverage in window 9:114586056-114586057
2012-10-07 18:56:10,504 - DEBUG - Taking top 8 variants by coverage in window 9:114587374-114587375
2012-10-07 18:56:10,512 - DEBUG - Taking top 8 variants by coverage in window 9:114587404-114587411
2012-10-07 18:56:10,570 - DEBUG - Taking top 8 variants by coverage in window 9:114588087-114588089
2012-10-07 18:56:10,624 - DEBUG - Taking top 8 variants by coverage in window 9:114588196-114588197
2012-10-07 18:56:11,267 - DEBUG - Taking top 8 variants by coverage in window 9:114596178-114596179
2012-10-07 18:56:11,455 - DEBUG - Taking top 8 variants by coverage in window 9:114599331-114599332
2012-10-07 18:56:12,347 - DEBUG - Taking top 8 variants by coverage in window 9:114609105-114609106
2012-10-07 18:56:12,361 - DEBUG - Taking top 8 variants by coverage in window 9:114609115-114609116
2012-10-07 18:56:13,063 - DEBUG - Taking top 8 variants by coverage in window 9:114616228-114616229
2012-10-07 18:56:13,206 - DEBUG - Taking top 8 variants by coverage in window 9:114617365-114617366
2012-10-07 18:56:13,231 - DEBUG - Taking top 8 variants by coverage in window 9:114617380-114617381
2012-10-07 18:56:13,326 - DEBUG - Taking top 8 variants by coverage in window 9:114617917-114617918
2012-10-07 18:56:14,004 - DEBUG - Taking top 8 variants by coverage in window 9:114623706-114623709
2012-10-07 18:56:14,067 - DEBUG - Taking top 8 variants by coverage in window 9:114623784-114623785
2012-10-07 18:56:14,142 - DEBUG - Taking top 8 variants by coverage in window 9:114624505-114624507
2012-10-07 18:56:14,483 - DEBUG - Taking top 8 variants by coverage in window 9:114627927-114627929
2012-10-07 18:56:14,634 - DEBUG - Taking top 8 variants by coverage in window 9:114629293-114629294
2012-10-07 18:56:14,655 - DEBUG - Taking top 8 variants by coverage in window 9:114629301-114629302
2012-10-07 18:56:14,716 - DEBUG - Taking top 8 variants by coverage in window 9:114629816-114629817
2012-10-07 18:56:14,746 - DEBUG - Taking top 8 variants by coverage in window 9:114630112-114630113
2012-10-07 18:56:14,902 - DEBUG - Taking top 8 variants by coverage in window 9:114631919-114631920
2012-10-07 18:56:16,129 - DEBUG - Taking top 8 variants by coverage in window 9:114647336-114647337
2012-10-07 18:56:16,304 - DEBUG - Taking top 8 variants by coverage in window 9:114650046-114650047
2012-10-07 18:56:16,313 - DEBUG - Taking top 8 variants by coverage in window 9:114650048-114650049
2012-10-07 18:56:16,450 - DEBUG - Taking top 8 variants by coverage in window 9:114651247-114651249
2012-10-07 18:56:16,540 - DEBUG - Taking top 8 variants by coverage in window 9:114652706-114652707
2012-10-07 18:56:16,617 - DEBUG - Taking top 8 variants by coverage in window 9:114652820-114652821
2012-10-07 18:56:16,798 - DEBUG - Taking top 8 variants by coverage in window 9:114654593-114654598
2012-10-07 18:56:16,832 - DEBUG - Taking top 8 variants by coverage in window 9:114654828-114654829
2012-10-07 18:56:16,855 - DEBUG - Taking top 8 variants by coverage in window 9:114654992-114654993
2012-10-07 18:56:17,126 - DEBUG - Taking top 8 variants by coverage in window 9:114659427-114659428
2012-10-07 18:56:18,315 - DEBUG - Taking top 8 variants by coverage in window 9:114669443-114669444
2012-10-07 18:56:18,344 - DEBUG - Taking top 8 variants by coverage in window 9:114669461-114669462
2012-10-07 18:56:18,812 - DEBUG - Taking top 8 variants by coverage in window 9:114672324-114672334
2012-10-07 18:56:19,513 - DEBUG - Taking top 8 variants by coverage in window 9:114676030-114676031
2012-10-07 18:56:19,579 - DEBUG - Taking top 8 variants by coverage in window 9:114676586-114676587
2012-10-07 18:56:19,614 - DEBUG - Taking top 8 variants by coverage in window 9:114676653-114676663
2012-10-07 18:56:20,223 - DEBUG - Taking top 8 variants by coverage in window 9:114678849-114678850
2012-10-07 18:56:20,649 - DEBUG - Taking top 8 variants by coverage in window 9:114682468-114682469
2012-10-07 18:56:20,756 - DEBUG - Taking top 8 variants by coverage in window 9:114682796-114682797
2012-10-07 18:56:21,300 - DEBUG - Taking top 8 variants by coverage in window 9:114686712-114686714
2012-10-07 18:56:22,373 - DEBUG - Taking top 8 variants by coverage in window 9:114694052-114694053
2012-10-07 18:56:22,391 - DEBUG - Taking top 8 variants by coverage in window 9:114694075-114694076
2012-10-07 18:56:22,811 - DEBUG - Taking top 8 variants by coverage in window 9:114698181-114698182
2012-10-07 18:56:22,963 - DEBUG - Taking top 8 variants by coverage in window 9:114698342-114698343
2012-10-07 18:56:23,100 - DEBUG - Taking top 8 variants by coverage in window 9:114698389-114698390
2012-10-07 18:56:23,126 - DEBUG - Taking top 8 variants by coverage in window 9:114698391-114698393
2012-10-07 18:56:24,012 - DEBUG - Taking top 8 variants by coverage in window 9:114703978-114703979
2012-10-07 18:56:24,403 - DEBUG - Taking top 8 variants by coverage in window 9:114707345-114707358
2012-10-07 18:56:24,717 - DEBUG - Taking top 8 variants by coverage in window 9:114707375-114707376
2012-10-07 18:56:24,843 - DEBUG - Taking top 8 variants by coverage in window 9:114707402-114707409
2012-10-07 18:56:25,042 - DEBUG - Taking top 8 variants by coverage in window 9:114709082-114709089
2012-10-07 18:56:25,988 - DEBUG - Taking top 8 variants by coverage in window 9:114718974-114718975
2012-10-07 18:56:26,052 - DEBUG - Taking top 8 variants by coverage in window 9:114719402-114719404
2012-10-07 18:56:26,144 - DEBUG - Taking top 8 variants by coverage in window 9:114719643-114719644
2012-10-07 18:56:26,605 - DEBUG - Taking top 8 variants by coverage in window 9:114722949-114722951
2012-10-07 18:56:28,164 - DEBUG - Taking top 8 variants by coverage in window 9:114736235-114736236
2012-10-07 18:56:28,316 - DEBUG - Taking top 8 variants by coverage in window 9:114737553-114737554
2012-10-07 18:56:28,456 - DEBUG - Taking top 8 variants by coverage in window 9:114738570-114738571
2012-10-07 18:56:29,287 - DEBUG - Taking top 8 variants by coverage in window 9:114744892-114744893
2012-10-07 18:56:29,397 - DEBUG - Taking top 8 variants by coverage in window 9:114745036-114745038
2012-10-07 18:56:29,681 - DEBUG - Taking top 8 variants by coverage in window 9:114748705-114748709
2012-10-07 18:56:29,786 - DEBUG - Taking top 8 variants by coverage in window 9:114748776-114748777
2012-10-07 18:56:30,028 - DEBUG - Taking top 8 variants by coverage in window 9:114751032-114751033
2012-10-07 18:56:30,181 - DEBUG - Taking top 8 variants by coverage in window 9:114751211-114751212
2012-10-07 18:56:30,859 - DEBUG - Taking top 8 variants by coverage in window 9:114755282-114755283
2012-10-07 18:56:30,945 - DEBUG - Taking top 8 variants by coverage in window 9:114755349-114755351
2012-10-07 18:56:31,074 - DEBUG - Taking top 8 variants by coverage in window 9:114756934-114756935
2012-10-07 18:56:31,636 - DEBUG - Taking top 8 variants by coverage in window 9:114763288-114763294
2012-10-07 18:56:31,961 - DEBUG - Taking top 8 variants by coverage in window 9:114765523-114765524
2012-10-07 18:56:32,191 - DEBUG - Taking top 8 variants by coverage in window 9:114766167-114766168
2012-10-07 18:56:32,820 - DEBUG - Taking top 8 variants by coverage in window 9:114769366-114769367
2012-10-07 18:56:33,960 - DEBUG - Taking top 8 variants by coverage in window 9:114775094-114775096
2012-10-07 18:56:34,590 - DEBUG - Taking top 8 variants by coverage in window 9:114775218-114775223
2012-10-07 18:56:34,970 - DEBUG - Taking top 8 variants by coverage in window 9:114776158-114776166
2012-10-07 18:56:35,142 - DEBUG - Taking top 8 variants by coverage in window 9:114776698-114776699
2012-10-07 18:56:35,792 - DEBUG - Taking top 8 variants by coverage in window 9:114783218-114783222
2012-10-07 18:56:35,844 - DEBUG - Taking top 8 variants by coverage in window 9:114788164-114788165
2012-10-07 18:56:36,508 - DEBUG - Taking top 8 variants by coverage in window 9:114791866-114791867
2012-10-07 18:56:37,045 - DEBUG - Taking top 8 variants by coverage in window 9:114794965-114794966
2012-10-07 18:56:37,547 - DEBUG - Taking top 8 variants by coverage in window 9:114799181-114799183
2012-10-07 18:56:38,179 - DEBUG - Taking top 8 variants by coverage in window 9:114805541-114805542
2012-10-07 18:56:40,231 - DEBUG - Taking top 8 variants by coverage in window 9:114819586-114819588
2012-10-07 18:56:40,261 - DEBUG - Taking top 8 variants by coverage in window 9:114819621-114819622
2012-10-07 18:56:40,401 - DEBUG - Taking top 8 variants by coverage in window 9:114820341-114820342
2012-10-07 18:56:41,030 - DEBUG - Taking top 8 variants by coverage in window 9:114826415-114826418
2012-10-07 18:56:41,977 - DEBUG - Taking top 8 variants by coverage in window 9:114831408-114831410
2012-10-07 18:56:42,422 - DEBUG - Taking top 8 variants by coverage in window 9:114832852-114832853
2012-10-07 18:56:42,803 - DEBUG - Taking top 8 variants by coverage in window 9:114835665-114835666
2012-10-07 18:56:43,102 - DEBUG - Taking top 8 variants by coverage in window 9:114837536-114837537
2012-10-07 18:56:43,194 - DEBUG - Taking top 8 variants by coverage in window 9:114838262-114838263
2012-10-07 18:56:43,603 - DEBUG - Taking top 8 variants by coverage in window 9:114840621-114840622
2012-10-07 18:56:43,709 - DEBUG - Taking top 8 variants by coverage in window 9:114841848-114841849
2012-10-07 18:56:44,037 - DEBUG - Taking top 8 variants by coverage in window 9:114845208-114845210
2012-10-07 18:56:44,071 - DEBUG - Taking top 8 variants by coverage in window 9:114845391-114845392
2012-10-07 18:56:44,154 - DEBUG - Taking top 8 variants by coverage in window 9:114846129-114846130
2012-10-07 18:56:45,446 - DEBUG - Taking top 8 variants by coverage in window 9:114856401-114856402
2012-10-07 18:56:45,783 - DEBUG - Taking top 8 variants by coverage in window 9:114858868-114858869
2012-10-07 18:56:46,004 - DEBUG - Taking top 8 variants by coverage in window 9:114859679-114859680
2012-10-07 18:56:46,425 - DEBUG - Taking top 8 variants by coverage in window 9:114862579-114862582
2012-10-07 18:56:46,656 - DEBUG - Taking top 8 variants by coverage in window 9:114863586-114863587
2012-10-07 18:56:46,762 - DEBUG - Taking top 8 variants by coverage in window 9:114863659-114863660
2012-10-07 18:56:48,250 - DEBUG - Taking top 8 variants by coverage in window 9:114866427-114866434
2012-10-07 18:56:49,558 - DEBUG - Taking top 8 variants by coverage in window 9:114876157-114876158
2012-10-07 18:56:50,006 - DEBUG - Taking top 8 variants by coverage in window 9:114879245-114879246
2012-10-07 18:56:50,152 - DEBUG - Taking top 8 variants by coverage in window 9:114884687-114884694
2012-10-07 18:56:50,472 - DEBUG - Taking top 8 variants by coverage in window 9:114886529-114886530
2012-10-07 18:56:50,920 - DEBUG - Taking top 8 variants by coverage in window 9:114891482-114891484
2012-10-07 18:56:50,958 - DEBUG - Taking top 8 variants by coverage in window 9:114891856-114891857
2012-10-07 18:56:51,015 - DEBUG - Taking top 8 variants by coverage in window 9:114892706-114892720
2012-10-07 18:56:53,178 - DEBUG - Taking top 8 variants by coverage in window 9:114900023-114900030
2012-10-07 18:56:53,256 - DEBUG - Taking top 8 variants by coverage in window 9:114900107-114900115
2012-10-07 18:56:53,508 - DEBUG - Taking top 8 variants by coverage in window 9:114900680-114900685
2012-10-07 18:56:53,533 - DEBUG - Taking top 8 variants by coverage in window 9:114900898-114900899
2012-10-07 18:56:54,692 - DEBUG - Taking top 8 variants by coverage in window 9:114910000-114910001
2012-10-07 18:56:55,366 - DEBUG - Taking top 8 variants by coverage in window 9:114911316-114911317
2012-10-07 18:56:56,264 - DEBUG - Taking top 8 variants by coverage in window 9:114913572-114913573
2012-10-07 18:56:56,284 - DEBUG - Taking top 8 variants by coverage in window 9:114913575-114913576
2012-10-07 18:56:57,175 - DEBUG - Taking top 8 variants by coverage in window 9:114919974-114919975
2012-10-07 18:56:57,189 - DEBUG - Taking top 8 variants by coverage in window 9:114919989-114919990
2012-10-07 18:56:57,261 - DEBUG - Taking top 8 variants by coverage in window 9:114920674-114920675
2012-10-07 18:56:58,186 - DEBUG - Taking top 8 variants by coverage in window 9:114929503-114929504
2012-10-07 18:56:58,884 - DEBUG - Taking top 8 variants by coverage in window 9:114933927-114933928
2012-10-07 18:56:59,093 - DEBUG - Taking top 8 variants by coverage in window 9:114934890-114934891
2012-10-07 18:56:59,667 - DEBUG - Taking top 8 variants by coverage in window 9:114944324-114944327
2012-10-07 18:56:59,793 - DEBUG - Taking top 8 variants by coverage in window 9:114944948-114944949
2012-10-07 18:57:00,317 - DEBUG - Taking top 8 variants by coverage in window 9:114948750-114948754
2012-10-07 18:57:00,581 - DEBUG - Taking top 8 variants by coverage in window 9:114950060-114950061
2012-10-07 18:57:01,010 - DEBUG - Taking top 8 variants by coverage in window 9:114952973-114952974
2012-10-07 18:57:01,391 - DEBUG - Taking top 8 variants by coverage in window 9:114955490-114955491
2012-10-07 18:57:02,311 - DEBUG - Taking top 8 variants by coverage in window 9:114962936-114962937
2012-10-07 18:57:02,325 - DEBUG - Taking top 8 variants by coverage in window 9:114962969-114962970
2012-10-07 18:57:02,335 - DEBUG - Taking top 8 variants by coverage in window 9:114962970-114962971
2012-10-07 18:57:02,395 - DEBUG - Taking top 8 variants by coverage in window 9:114963030-114963031
2012-10-07 18:57:02,696 - DEBUG - Taking top 8 variants by coverage in window 9:114965513-114965514
2012-10-07 18:57:02,803 - DEBUG - Taking top 8 variants by coverage in window 9:114966736-114966737
2012-10-07 18:57:02,855 - DEBUG - Taking top 8 variants by coverage in window 9:114967022-114967035
2012-10-07 18:57:04,196 - DEBUG - Taking top 8 variants by coverage in window 9:114970353-114970354
2012-10-07 18:57:04,622 - DEBUG - Taking top 8 variants by coverage in window 9:114971389-114971390
2012-10-07 18:57:04,661 - DEBUG - Taking top 8 variants by coverage in window 9:114971414-114971418
2012-10-07 18:57:04,850 - DEBUG - Taking top 8 variants by coverage in window 9:114971453-114971459
2012-10-07 18:57:05,034 - DEBUG - Taking top 8 variants by coverage in window 9:114971463-114971471
2012-10-07 18:57:05,241 - DEBUG - Taking top 8 variants by coverage in window 9:114971501-114971509
2012-10-07 18:57:05,631 - DEBUG - Taking top 8 variants by coverage in window 9:114972826-114972827
2012-10-07 18:57:05,881 - DEBUG - Taking top 8 variants by coverage in window 9:114974318-114974319
2012-10-07 18:57:05,927 - DEBUG - Taking top 8 variants by coverage in window 9:114974667-114974668
2012-10-07 18:57:06,063 - DEBUG - Taking top 8 variants by coverage in window 9:114975185-114975186
2012-10-07 18:57:06,141 - DEBUG - Taking top 8 variants by coverage in window 9:114975368-114975369
2012-10-07 18:57:06,611 - DEBUG - Taking top 8 variants by coverage in window 9:114979527-114979528
2012-10-07 18:57:06,824 - DEBUG - Taking top 8 variants by coverage in window 9:114981403-114981404
2012-10-07 18:57:06,901 - DEBUG - Taking top 8 variants by coverage in window 9:114981861-114981865
2012-10-07 18:57:07,286 - DEBUG - Taking top 8 variants by coverage in window 9:114983837-114983838
2012-10-07 18:57:07,499 - DEBUG - Taking top 8 variants by coverage in window 9:114987141-114987143
2012-10-07 18:57:07,563 - DEBUG - Taking top 8 variants by coverage in window 9:114994315-114994316
2012-10-07 18:57:07,773 - DEBUG - Taking top 8 variants by coverage in window 9:114995770-114995771
2012-10-07 18:57:07,784 - DEBUG - Taking top 8 variants by coverage in window 9:114995771-114995772
2012-10-07 18:57:07,849 - DEBUG - Taking top 8 variants by coverage in window 9:114995828-114995829
2012-10-07 18:57:08,156 - DEBUG - Taking top 8 variants by coverage in window 9:114999581-114999589
2012-10-07 18:57:08,191 - DEBUG - Taking top 8 variants by coverage in window 9:114999789-114999790
2012-10-07 18:57:09,050 - INFO - Processing region 9:115000000-116000000
2012-10-07 18:57:09,293 - DEBUG - Read 104009 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 18:57:09,567 - DEBUG - Read 115529 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 18:57:09,854 - DEBUG - Read 130462 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 18:57:10,178 - DEBUG - Read 132651 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 18:57:10,482 - DEBUG - Read 124613 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 18:57:10,755 - DEBUG - Read 119436 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 18:57:11,037 - DEBUG - Read 125035 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 18:57:11,322 - DEBUG - Read 115338 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 18:57:11,586 - DEBUG - Read 110270 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 18:57:11,853 - DEBUG - Read 108967 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 18:57:12,141 - DEBUG - Read 122460 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 18:57:12,401 - DEBUG - Read 113338 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 18:57:12,673 - DEBUG - Read 114810 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 18:57:12,947 - DEBUG - Read 125141 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 18:57:13,247 - DEBUG - Read 133369 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 18:57:13,507 - DEBUG - Read 106075 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 18:57:13,792 - DEBUG - Read 128802 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 18:57:14,071 - DEBUG - Read 119981 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 18:57:14,324 - DEBUG - Read 109905 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 18:57:14,582 - DEBUG - Read 103679 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 18:57:14,695 - DEBUG - Detected 28999 variants in 104009 reads
2012-10-07 18:57:14,880 - DEBUG - Detected 40659 variants in 115529 reads
2012-10-07 18:57:15,148 - DEBUG - Detected 53958 variants in 130462 reads
2012-10-07 18:57:15,467 - DEBUG - Detected 64802 variants in 132651 reads
2012-10-07 18:57:15,818 - DEBUG - Detected 71466 variants in 124613 reads
2012-10-07 18:57:16,187 - DEBUG - Detected 78346 variants in 119436 reads
2012-10-07 18:57:16,609 - DEBUG - Detected 94292 variants in 125035 reads
2012-10-07 18:57:17,093 - DEBUG - Detected 100923 variants in 115338 reads
2012-10-07 18:57:17,594 - DEBUG - Detected 107879 variants in 110270 reads
2012-10-07 18:57:18,162 - DEBUG - Detected 114325 variants in 108967 reads
2012-10-07 18:57:18,722 - DEBUG - Detected 120517 variants in 122460 reads
2012-10-07 18:57:19,314 - DEBUG - Detected 125818 variants in 113338 reads
2012-10-07 18:57:19,934 - DEBUG - Detected 130898 variants in 114810 reads
2012-10-07 18:57:20,584 - DEBUG - Detected 136181 variants in 125141 reads
2012-10-07 18:57:21,313 - DEBUG - Detected 145423 variants in 133369 reads
2012-10-07 18:57:22,002 - DEBUG - Detected 149901 variants in 106075 reads
2012-10-07 18:57:22,758 - DEBUG - Detected 158024 variants in 128802 reads
2012-10-07 18:57:23,516 - DEBUG - Detected 162786 variants in 119981 reads
2012-10-07 18:57:24,374 - DEBUG - Detected 168249 variants in 109905 reads
2012-10-07 18:57:25,184 - DEBUG - Detected 173806 variants in 103679 reads
2012-10-07 18:57:27,091 - DEBUG - Taking top 8 variants by coverage in window 9:115006271-115006275
2012-10-07 18:57:28,533 - DEBUG - Taking top 8 variants by coverage in window 9:115021056-115021058
2012-10-07 18:57:31,219 - DEBUG - Taking top 8 variants by coverage in window 9:115045694-115045699
2012-10-07 18:57:32,678 - DEBUG - Taking top 8 variants by coverage in window 9:115051741-115051749
2012-10-07 18:57:33,071 - DEBUG - Taking top 8 variants by coverage in window 9:115052673-115052676
2012-10-07 18:57:35,006 - DEBUG - Taking top 8 variants by coverage in window 9:115066849-115066852
2012-10-07 18:57:35,414 - DEBUG - Taking top 8 variants by coverage in window 9:115069871-115069872
2012-10-07 18:57:35,436 - DEBUG - Taking top 8 variants by coverage in window 9:115069875-115069879
2012-10-07 18:57:35,493 - DEBUG - Taking top 8 variants by coverage in window 9:115069889-115069890
2012-10-07 18:57:36,308 - DEBUG - Taking top 8 variants by coverage in window 9:115074183-115074184
2012-10-07 18:57:37,227 - DEBUG - Taking top 8 variants by coverage in window 9:115083620-115083621
2012-10-07 18:57:37,630 - DEBUG - Taking top 8 variants by coverage in window 9:115088432-115088433
2012-10-07 18:57:38,184 - DEBUG - Taking top 8 variants by coverage in window 9:115093733-115093734
2012-10-07 18:57:40,505 - DEBUG - Taking top 8 variants by coverage in window 9:115108146-115108156
2012-10-07 18:57:40,913 - DEBUG - Taking top 8 variants by coverage in window 9:115108734-115108735
2012-10-07 18:57:42,410 - DEBUG - Taking top 8 variants by coverage in window 9:115119172-115119173
2012-10-07 18:57:42,442 - DEBUG - Taking top 8 variants by coverage in window 9:115119362-115119363
2012-10-07 18:57:43,360 - DEBUG - Taking top 8 variants by coverage in window 9:115127658-115127660
2012-10-07 18:57:43,640 - DEBUG - Taking top 8 variants by coverage in window 9:115129860-115129863
2012-10-07 18:57:44,448 - DEBUG - Taking top 8 variants by coverage in window 9:115134880-115134881
2012-10-07 18:57:45,929 - DEBUG - Taking top 8 variants by coverage in window 9:115149745-115149752
2012-10-07 18:57:46,389 - DEBUG - Taking top 8 variants by coverage in window 9:115156757-115156760
2012-10-07 18:57:46,442 - DEBUG - Taking top 8 variants by coverage in window 9:115156801-115156802
2012-10-07 18:57:47,183 - DEBUG - Taking top 8 variants by coverage in window 9:115172670-115172671
2012-10-07 18:57:47,218 - DEBUG - Taking top 8 variants by coverage in window 9:115172864-115172865
2012-10-07 18:57:48,104 - DEBUG - Taking top 8 variants by coverage in window 9:115188939-115188940
2012-10-07 18:57:50,287 - DEBUG - Taking top 8 variants by coverage in window 9:115223817-115223820
2012-10-07 18:57:50,461 - DEBUG - Taking top 8 variants by coverage in window 9:115224630-115224631
2012-10-07 18:57:50,820 - DEBUG - Taking top 8 variants by coverage in window 9:115228504-115228505
2012-10-07 18:57:51,385 - DEBUG - Taking top 8 variants by coverage in window 9:115234869-115234870
2012-10-07 18:57:51,398 - DEBUG - Taking top 8 variants by coverage in window 9:115234870-115234871
2012-10-07 18:57:51,532 - DEBUG - Taking top 8 variants by coverage in window 9:115236597-115236598
2012-10-07 18:57:52,652 - DEBUG - Taking top 8 variants by coverage in window 9:115251301-115251309
2012-10-07 18:57:53,264 - DEBUG - Taking top 8 variants by coverage in window 9:115258923-115258928
2012-10-07 18:57:54,308 - DEBUG - Taking top 8 variants by coverage in window 9:115265358-115265359
2012-10-07 18:57:55,014 - DEBUG - Taking top 8 variants by coverage in window 9:115273994-115273995
2012-10-07 18:57:55,031 - DEBUG - Taking top 8 variants by coverage in window 9:115273997-115273998
2012-10-07 18:57:55,869 - DEBUG - Taking top 8 variants by coverage in window 9:115284793-115284794
2012-10-07 18:57:56,060 - DEBUG - Taking top 8 variants by coverage in window 9:115287449-115287457
2012-10-07 18:57:57,014 - DEBUG - Taking top 8 variants by coverage in window 9:115298573-115298574
2012-10-07 18:57:57,224 - DEBUG - Taking top 8 variants by coverage in window 9:115298972-115298974
2012-10-07 18:57:59,148 - DEBUG - Taking top 8 variants by coverage in window 9:115311295-115311296
2012-10-07 18:57:59,721 - DEBUG - Taking top 8 variants by coverage in window 9:115316142-115316143
2012-10-07 18:58:00,050 - DEBUG - Taking top 8 variants by coverage in window 9:115319639-115319644
2012-10-07 18:58:01,392 - DEBUG - Taking top 8 variants by coverage in window 9:115320891-115320892
2012-10-07 18:58:01,947 - DEBUG - Taking top 8 variants by coverage in window 9:115325553-115325555
2012-10-07 18:58:02,166 - DEBUG - Taking top 8 variants by coverage in window 9:115326844-115326849
2012-10-07 18:58:02,506 - DEBUG - Taking top 8 variants by coverage in window 9:115329442-115329443
2012-10-07 18:58:03,289 - DEBUG - Taking top 8 variants by coverage in window 9:115334818-115334819
2012-10-07 18:58:03,374 - DEBUG - Taking top 8 variants by coverage in window 9:115335231-115335240
2012-10-07 18:58:06,659 - DEBUG - Taking top 8 variants by coverage in window 9:115366963-115366964
2012-10-07 18:58:06,794 - DEBUG - Taking top 8 variants by coverage in window 9:115367870-115367871
2012-10-07 18:58:08,497 - DEBUG - Taking top 8 variants by coverage in window 9:115386266-115386269
2012-10-07 18:58:08,560 - DEBUG - Taking top 8 variants by coverage in window 9:115386293-115386300
2012-10-07 18:58:09,081 - DEBUG - Taking top 8 variants by coverage in window 9:115389008-115389011
2012-10-07 18:58:10,535 - DEBUG - Taking top 8 variants by coverage in window 9:115404479-115404480
2012-10-07 18:58:11,816 - DEBUG - Taking top 8 variants by coverage in window 9:115417004-115417008
2012-10-07 18:58:12,899 - DEBUG - Taking top 8 variants by coverage in window 9:115426131-115426137
2012-10-07 18:58:13,298 - DEBUG - Taking top 8 variants by coverage in window 9:115428918-115428925
2012-10-07 18:58:13,447 - DEBUG - Taking top 8 variants by coverage in window 9:115430896-115430897
2012-10-07 18:58:13,680 - DEBUG - Taking top 8 variants by coverage in window 9:115435235-115435237
2012-10-07 18:58:14,415 - DEBUG - Taking top 8 variants by coverage in window 9:115441618-115441622
2012-10-07 18:58:14,588 - DEBUG - Taking top 8 variants by coverage in window 9:115442713-115442725
2012-10-07 18:58:14,670 - DEBUG - Taking top 8 variants by coverage in window 9:115442910-115442911
2012-10-07 18:58:14,848 - DEBUG - Taking top 8 variants by coverage in window 9:115444242-115444248
2012-10-07 18:58:14,878 - DEBUG - Taking top 8 variants by coverage in window 9:115444334-115444338
2012-10-07 18:58:15,302 - DEBUG - Taking top 8 variants by coverage in window 9:115450286-115450287
2012-10-07 18:58:15,312 - DEBUG - Taking top 8 variants by coverage in window 9:115450287-115450288
2012-10-07 18:58:15,695 - DEBUG - Taking top 8 variants by coverage in window 9:115452446-115452453
2012-10-07 18:58:16,191 - DEBUG - Taking top 8 variants by coverage in window 9:115455859-115455862
2012-10-07 18:58:16,368 - DEBUG - Taking top 8 variants by coverage in window 9:115457231-115457232
2012-10-07 18:58:16,980 - DEBUG - Taking top 8 variants by coverage in window 9:115461217-115461219
2012-10-07 18:58:17,094 - DEBUG - Taking top 8 variants by coverage in window 9:115462300-115462301
2012-10-07 18:58:17,146 - DEBUG - Taking top 8 variants by coverage in window 9:115462586-115462588
2012-10-07 18:58:17,502 - DEBUG - Taking top 8 variants by coverage in window 9:115465984-115465989
2012-10-07 18:58:18,332 - DEBUG - Taking top 8 variants by coverage in window 9:115470012-115470022
2012-10-07 18:58:19,632 - DEBUG - Taking top 8 variants by coverage in window 9:115482607-115482608
2012-10-07 18:58:19,823 - DEBUG - Taking top 8 variants by coverage in window 9:115484032-115484035
2012-10-07 18:58:22,025 - DEBUG - Taking top 8 variants by coverage in window 9:115506153-115506154
2012-10-07 18:58:22,686 - DEBUG - Taking top 8 variants by coverage in window 9:115514080-115514081
2012-10-07 18:58:23,865 - DEBUG - Taking top 8 variants by coverage in window 9:115531414-115531416
2012-10-07 18:58:24,114 - DEBUG - Taking top 8 variants by coverage in window 9:115534877-115534878
2012-10-07 18:58:24,587 - DEBUG - Taking top 8 variants by coverage in window 9:115540184-115540185
2012-10-07 18:58:24,622 - DEBUG - Taking top 8 variants by coverage in window 9:115540203-115540204
2012-10-07 18:58:24,885 - DEBUG - Taking top 8 variants by coverage in window 9:115543418-115543419
2012-10-07 18:58:24,898 - DEBUG - Taking top 8 variants by coverage in window 9:115543448-115543449
2012-10-07 18:58:25,125 - DEBUG - Taking top 8 variants by coverage in window 9:115544853-115544855
2012-10-07 18:58:25,163 - DEBUG - Taking top 8 variants by coverage in window 9:115544921-115544924
2012-10-07 18:58:25,247 - DEBUG - Taking top 8 variants by coverage in window 9:115545502-115545506
2012-10-07 18:58:25,306 - DEBUG - Taking top 8 variants by coverage in window 9:115545917-115545918
2012-10-07 18:58:25,313 - DEBUG - Taking top 8 variants by coverage in window 9:115545925-115545926
2012-10-07 18:58:25,370 - DEBUG - Taking top 8 variants by coverage in window 9:115546097-115546108
2012-10-07 18:58:28,692 - DEBUG - Taking top 8 variants by coverage in window 9:115552490-115552491
2012-10-07 18:58:28,717 - DEBUG - Taking top 8 variants by coverage in window 9:115552497-115552498
2012-10-07 18:58:28,774 - DEBUG - Taking top 8 variants by coverage in window 9:115552974-115552975
2012-10-07 18:58:29,311 - DEBUG - Taking top 8 variants by coverage in window 9:115557820-115557821
2012-10-07 18:58:29,643 - DEBUG - Taking top 8 variants by coverage in window 9:115561147-115561148
2012-10-07 18:58:29,671 - DEBUG - Taking top 8 variants by coverage in window 9:115561150-115561151
2012-10-07 18:58:29,854 - DEBUG - Taking top 8 variants by coverage in window 9:115561674-115561691
2012-10-07 18:58:29,874 - DEBUG - Taking top 8 variants by coverage in window 9:115561692-115561694
2012-10-07 18:58:30,738 - DEBUG - Taking top 8 variants by coverage in window 9:115569497-115569498
2012-10-07 18:58:30,822 - DEBUG - Taking top 8 variants by coverage in window 9:115570382-115570384
2012-10-07 18:58:31,205 - DEBUG - Taking top 8 variants by coverage in window 9:115573243-115573244
2012-10-07 18:58:32,984 - DEBUG - Taking top 8 variants by coverage in window 9:115593715-115593718
2012-10-07 18:58:33,954 - DEBUG - Taking top 8 variants by coverage in window 9:115603850-115603856
2012-10-07 18:58:34,219 - DEBUG - Taking top 8 variants by coverage in window 9:115604987-115604988
2012-10-07 18:58:34,429 - DEBUG - Taking top 8 variants by coverage in window 9:115606721-115606738
2012-10-07 18:58:35,169 - DEBUG - Taking top 8 variants by coverage in window 9:115615964-115615971
2012-10-07 18:58:35,604 - DEBUG - Taking top 8 variants by coverage in window 9:115616991-115616992
2012-10-07 18:58:35,640 - DEBUG - Taking top 8 variants by coverage in window 9:115616993-115616994
2012-10-07 18:58:35,693 - DEBUG - Taking top 8 variants by coverage in window 9:115617001-115617003
2012-10-07 18:58:36,195 - DEBUG - Taking top 8 variants by coverage in window 9:115621088-115621089
2012-10-07 18:58:36,484 - DEBUG - Taking top 8 variants by coverage in window 9:115622656-115622664
2012-10-07 18:58:36,503 - DEBUG - Taking top 8 variants by coverage in window 9:115622671-115622672
2012-10-07 18:58:36,680 - DEBUG - Taking top 8 variants by coverage in window 9:115623579-115623583
2012-10-07 18:58:37,511 - DEBUG - Taking top 8 variants by coverage in window 9:115630269-115630270
2012-10-07 18:58:37,520 - DEBUG - Taking top 8 variants by coverage in window 9:115630272-115630275
2012-10-07 18:58:37,637 - DEBUG - Taking top 8 variants by coverage in window 9:115630448-115630454
2012-10-07 18:58:39,123 - DEBUG - Taking top 8 variants by coverage in window 9:115649098-115649115
2012-10-07 18:58:39,139 - DEBUG - Taking top 8 variants by coverage in window 9:115649118-115649119
2012-10-07 18:58:39,176 - DEBUG - Taking top 8 variants by coverage in window 9:115649132-115649133
2012-10-07 18:58:39,208 - DEBUG - Taking top 8 variants by coverage in window 9:115649164-115649165
2012-10-07 18:58:39,847 - DEBUG - Taking top 8 variants by coverage in window 9:115654038-115654039
2012-10-07 18:58:40,380 - DEBUG - Taking top 8 variants by coverage in window 9:115657571-115657572
2012-10-07 18:58:40,966 - DEBUG - Taking top 8 variants by coverage in window 9:115659148-115659149
2012-10-07 18:58:41,500 - DEBUG - Taking top 8 variants by coverage in window 9:115662979-115662982
2012-10-07 18:58:41,654 - DEBUG - Taking top 8 variants by coverage in window 9:115664584-115664585
2012-10-07 18:58:41,721 - DEBUG - Taking top 8 variants by coverage in window 9:115664621-115664622
2012-10-07 18:58:42,366 - DEBUG - Taking top 8 variants by coverage in window 9:115672693-115672694
2012-10-07 18:58:42,902 - DEBUG - Taking top 8 variants by coverage in window 9:115674498-115674499
2012-10-07 18:58:43,402 - DEBUG - Taking top 8 variants by coverage in window 9:115674583-115674586
2012-10-07 18:58:43,797 - DEBUG - Taking top 8 variants by coverage in window 9:115674751-115674753
2012-10-07 18:58:43,953 - DEBUG - Taking top 8 variants by coverage in window 9:115674755-115674756
2012-10-07 18:58:44,161 - DEBUG - Taking top 8 variants by coverage in window 9:115674772-115674775
2012-10-07 18:58:44,869 - DEBUG - Taking top 8 variants by coverage in window 9:115674819-115674820
2012-10-07 18:58:44,987 - DEBUG - Taking top 8 variants by coverage in window 9:115674822-115674823
2012-10-07 18:58:45,281 - DEBUG - Taking top 8 variants by coverage in window 9:115674859-115674860
2012-10-07 18:58:45,551 - DEBUG - Taking top 8 variants by coverage in window 9:115676709-115676716
2012-10-07 18:58:46,235 - DEBUG - Taking top 8 variants by coverage in window 9:115681413-115681414
2012-10-07 18:58:46,540 - DEBUG - Taking top 8 variants by coverage in window 9:115684521-115684522
2012-10-07 18:58:46,596 - DEBUG - Taking top 8 variants by coverage in window 9:115685477-115685478
2012-10-07 18:58:46,922 - DEBUG - Taking top 8 variants by coverage in window 9:115690218-115690219
2012-10-07 18:58:47,645 - DEBUG - Taking top 8 variants by coverage in window 9:115696260-115696261
2012-10-07 18:58:47,684 - DEBUG - Taking top 8 variants by coverage in window 9:115696294-115696295
2012-10-07 18:58:48,083 - DEBUG - Taking top 8 variants by coverage in window 9:115700014-115700015
2012-10-07 18:58:48,232 - DEBUG - Taking top 8 variants by coverage in window 9:115706278-115706279
2012-10-07 18:58:48,320 - DEBUG - Taking top 8 variants by coverage in window 9:115706758-115706759
2012-10-07 18:58:48,331 - DEBUG - Taking top 8 variants by coverage in window 9:115706759-115706760
2012-10-07 18:58:48,454 - DEBUG - Taking top 8 variants by coverage in window 9:115707517-115707521
2012-10-07 18:58:48,582 - DEBUG - Taking top 8 variants by coverage in window 9:115708280-115708282
2012-10-07 18:58:49,062 - DEBUG - Taking top 8 variants by coverage in window 9:115713457-115713458
2012-10-07 18:58:49,118 - DEBUG - Taking top 8 variants by coverage in window 9:115713459-115713460
2012-10-07 18:58:49,336 - DEBUG - Taking top 8 variants by coverage in window 9:115715274-115715275
2012-10-07 18:58:49,594 - DEBUG - Taking top 8 variants by coverage in window 9:115717867-115717868
2012-10-07 18:58:49,977 - DEBUG - Taking top 8 variants by coverage in window 9:115722527-115722536
2012-10-07 18:58:51,482 - DEBUG - Taking top 8 variants by coverage in window 9:115739616-115739617
2012-10-07 18:58:52,131 - DEBUG - Taking top 8 variants by coverage in window 9:115745297-115745298
2012-10-07 18:58:52,273 - DEBUG - Taking top 8 variants by coverage in window 9:115745925-115745929
2012-10-07 18:58:52,431 - DEBUG - Taking top 8 variants by coverage in window 9:115746085-115746087
2012-10-07 18:58:52,516 - DEBUG - Taking top 8 variants by coverage in window 9:115746117-115746123
2012-10-07 18:58:52,966 - DEBUG - Taking top 8 variants by coverage in window 9:115748260-115748261
2012-10-07 18:58:53,136 - DEBUG - Taking top 8 variants by coverage in window 9:115749195-115749196
2012-10-07 18:58:53,209 - DEBUG - Taking top 8 variants by coverage in window 9:115749499-115749501
2012-10-07 18:58:53,470 - DEBUG - Taking top 8 variants by coverage in window 9:115750647-115750650
2012-10-07 18:58:53,497 - DEBUG - Taking top 8 variants by coverage in window 9:115750661-115750664
2012-10-07 18:58:54,107 - DEBUG - Taking top 8 variants by coverage in window 9:115756433-115756436
2012-10-07 18:58:54,757 - DEBUG - Taking top 8 variants by coverage in window 9:115758547-115758548
2012-10-07 18:58:55,072 - DEBUG - Taking top 8 variants by coverage in window 9:115761046-115761047
2012-10-07 18:58:55,360 - DEBUG - Taking top 8 variants by coverage in window 9:115763103-115763105
2012-10-07 18:58:55,553 - DEBUG - Taking top 8 variants by coverage in window 9:115764777-115764781
2012-10-07 18:58:55,577 - DEBUG - Taking top 8 variants by coverage in window 9:115764783-115764784
2012-10-07 18:58:55,952 - DEBUG - Taking top 8 variants by coverage in window 9:115770805-115770806
2012-10-07 18:58:56,447 - DEBUG - Taking top 8 variants by coverage in window 9:115774240-115774241
2012-10-07 18:58:56,511 - DEBUG - Taking top 8 variants by coverage in window 9:115774293-115774294
2012-10-07 18:58:56,755 - DEBUG - Taking top 8 variants by coverage in window 9:115774440-115774441
2012-10-07 18:58:56,965 - DEBUG - Taking top 8 variants by coverage in window 9:115775118-115775119
2012-10-07 18:58:57,174 - DEBUG - Taking top 8 variants by coverage in window 9:115777419-115777425
2012-10-07 18:58:57,358 - DEBUG - Taking top 8 variants by coverage in window 9:115777845-115777854
2012-10-07 18:58:57,429 - DEBUG - Taking top 8 variants by coverage in window 9:115778207-115778210
2012-10-07 18:58:57,844 - DEBUG - Taking top 8 variants by coverage in window 9:115781268-115781271
2012-10-07 18:58:58,368 - DEBUG - Taking top 8 variants by coverage in window 9:115786535-115786537
2012-10-07 18:58:59,355 - DEBUG - Taking top 8 variants by coverage in window 9:115794091-115794110
2012-10-07 18:58:59,411 - DEBUG - Taking top 8 variants by coverage in window 9:115794620-115794622
2012-10-07 18:58:59,485 - DEBUG - Taking top 8 variants by coverage in window 9:115794635-115794636
2012-10-07 18:58:59,627 - DEBUG - Taking top 8 variants by coverage in window 9:115795779-115795780
2012-10-07 18:58:59,642 - DEBUG - Taking top 8 variants by coverage in window 9:115795783-115795784
2012-10-07 18:58:59,727 - DEBUG - Taking top 8 variants by coverage in window 9:115796055-115796056
2012-10-07 18:59:00,604 - DEBUG - Taking top 8 variants by coverage in window 9:115804478-115804479
2012-10-07 18:59:00,635 - DEBUG - Taking top 8 variants by coverage in window 9:115804508-115804510
2012-10-07 18:59:01,671 - DEBUG - Taking top 8 variants by coverage in window 9:115815073-115815074
2012-10-07 18:59:01,695 - DEBUG - Taking top 8 variants by coverage in window 9:115815075-115815076
2012-10-07 18:59:02,099 - DEBUG - Taking top 8 variants by coverage in window 9:115818033-115818035
2012-10-07 18:59:02,160 - DEBUG - Taking top 8 variants by coverage in window 9:115818040-115818043
2012-10-07 18:59:02,351 - DEBUG - Taking top 8 variants by coverage in window 9:115818716-115818720
2012-10-07 18:59:02,798 - DEBUG - Taking top 8 variants by coverage in window 9:115821711-115821712
2012-10-07 18:59:02,985 - DEBUG - Taking top 8 variants by coverage in window 9:115822676-115822677
2012-10-07 18:59:04,125 - DEBUG - Taking top 8 variants by coverage in window 9:115834541-115834542
2012-10-07 18:59:04,780 - DEBUG - Taking top 8 variants by coverage in window 9:115840162-115840163
2012-10-07 18:59:05,380 - DEBUG - Taking top 8 variants by coverage in window 9:115845524-115845525
2012-10-07 18:59:05,525 - DEBUG - Taking top 8 variants by coverage in window 9:115846504-115846505
2012-10-07 18:59:05,668 - DEBUG - Taking top 8 variants by coverage in window 9:115847559-115847560
2012-10-07 18:59:05,834 - DEBUG - Taking top 8 variants by coverage in window 9:115848916-115848920
2012-10-07 18:59:06,456 - DEBUG - Taking top 8 variants by coverage in window 9:115853588-115853589
2012-10-07 18:59:06,869 - DEBUG - Taking top 8 variants by coverage in window 9:115859389-115859393
2012-10-07 18:59:06,910 - DEBUG - Taking top 8 variants by coverage in window 9:115859699-115859701
2012-10-07 18:59:09,063 - DEBUG - Taking top 8 variants by coverage in window 9:115884593-115884594
2012-10-07 18:59:09,456 - DEBUG - Taking top 8 variants by coverage in window 9:115887533-115887546
2012-10-07 18:59:10,525 - DEBUG - Taking top 8 variants by coverage in window 9:115896012-115896013
2012-10-07 18:59:10,944 - DEBUG - Taking top 8 variants by coverage in window 9:115899484-115899490
2012-10-07 18:59:11,158 - DEBUG - Taking top 8 variants by coverage in window 9:115900466-115900467
2012-10-07 18:59:11,204 - DEBUG - Taking top 8 variants by coverage in window 9:115900511-115900515
2012-10-07 18:59:11,410 - DEBUG - Taking top 8 variants by coverage in window 9:115901253-115901254
2012-10-07 18:59:11,478 - DEBUG - Taking top 8 variants by coverage in window 9:115901271-115901279
2012-10-07 18:59:12,744 - DEBUG - Taking top 8 variants by coverage in window 9:115910787-115910788
2012-10-07 18:59:13,291 - DEBUG - Taking top 8 variants by coverage in window 9:115914599-115914601
2012-10-07 18:59:13,308 - DEBUG - Taking top 8 variants by coverage in window 9:115914619-115914620
2012-10-07 18:59:13,330 - DEBUG - Taking top 8 variants by coverage in window 9:115914838-115914839
2012-10-07 18:59:13,429 - DEBUG - Taking top 8 variants by coverage in window 9:115915827-115915845
2012-10-07 18:59:14,101 - DEBUG - Taking top 8 variants by coverage in window 9:115918531-115918532
2012-10-07 18:59:14,494 - DEBUG - Taking top 8 variants by coverage in window 9:115922333-115922334
2012-10-07 18:59:14,743 - DEBUG - Taking top 8 variants by coverage in window 9:115923526-115923527
2012-10-07 18:59:14,788 - DEBUG - Taking top 8 variants by coverage in window 9:115923536-115923537
2012-10-07 18:59:14,836 - DEBUG - Taking top 8 variants by coverage in window 9:115923568-115923569
2012-10-07 18:59:14,936 - DEBUG - Taking top 8 variants by coverage in window 9:115923671-115923679
2012-10-07 18:59:15,523 - DEBUG - Taking top 8 variants by coverage in window 9:115924572-115924573
2012-10-07 18:59:16,577 - DEBUG - Taking top 8 variants by coverage in window 9:115931490-115931491
2012-10-07 18:59:17,033 - DEBUG - Taking top 8 variants by coverage in window 9:115936464-115936465
2012-10-07 18:59:17,880 - DEBUG - Taking top 8 variants by coverage in window 9:115942862-115942863
2012-10-07 18:59:18,244 - DEBUG - Taking top 8 variants by coverage in window 9:115945374-115945375
2012-10-07 18:59:18,696 - DEBUG - Taking top 8 variants by coverage in window 9:115949510-115949514
2012-10-07 18:59:19,029 - DEBUG - Taking top 8 variants by coverage in window 9:115951259-115951260
2012-10-07 18:59:19,808 - DEBUG - Taking top 8 variants by coverage in window 9:115952184-115952185
2012-10-07 18:59:19,998 - DEBUG - Taking top 8 variants by coverage in window 9:115953286-115953296
2012-10-07 18:59:20,276 - DEBUG - Taking top 8 variants by coverage in window 9:115955678-115955679
2012-10-07 18:59:20,495 - DEBUG - Taking top 8 variants by coverage in window 9:115957862-115957863
2012-10-07 18:59:20,538 - DEBUG - Taking top 8 variants by coverage in window 9:115957883-115957886
2012-10-07 18:59:20,708 - DEBUG - Taking top 8 variants by coverage in window 9:115957904-115957905
2012-10-07 18:59:20,742 - DEBUG - Taking top 8 variants by coverage in window 9:115957994-115957995
2012-10-07 18:59:20,756 - DEBUG - Taking top 8 variants by coverage in window 9:115958011-115958012
2012-10-07 18:59:20,894 - DEBUG - Taking top 8 variants by coverage in window 9:115958867-115958868
2012-10-07 18:59:21,270 - DEBUG - Taking top 8 variants by coverage in window 9:115961618-115961621
2012-10-07 18:59:21,634 - DEBUG - Taking top 8 variants by coverage in window 9:115962688-115962689
2012-10-07 18:59:21,645 - DEBUG - Taking top 8 variants by coverage in window 9:115962690-115962691
2012-10-07 18:59:22,541 - DEBUG - Taking top 8 variants by coverage in window 9:115968394-115968395
2012-10-07 18:59:22,553 - DEBUG - Taking top 8 variants by coverage in window 9:115968395-115968396
2012-10-07 18:59:22,748 - DEBUG - Taking top 8 variants by coverage in window 9:115968716-115968721
2012-10-07 18:59:23,435 - DEBUG - Taking top 8 variants by coverage in window 9:115971569-115971570
2012-10-07 18:59:23,456 - DEBUG - Taking top 8 variants by coverage in window 9:115971599-115971600
2012-10-07 18:59:24,767 - DEBUG - Taking top 8 variants by coverage in window 9:115981062-115981064
2012-10-07 18:59:25,108 - DEBUG - Taking top 8 variants by coverage in window 9:115984291-115984299
2012-10-07 18:59:28,151 - DEBUG - Read 102551 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 18:59:28,424 - DEBUG - Read 112783 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 18:59:28,702 - DEBUG - Read 129600 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 18:59:29,014 - DEBUG - Read 130948 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 18:59:29,309 - DEBUG - Read 123104 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 18:59:29,575 - DEBUG - Read 118513 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 18:59:29,852 - DEBUG - Read 124957 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 18:59:30,125 - DEBUG - Read 114060 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 18:59:30,381 - DEBUG - Read 108388 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 18:59:30,637 - DEBUG - Read 107507 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 18:59:30,917 - DEBUG - Read 120659 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 18:59:31,166 - DEBUG - Read 109532 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 18:59:31,425 - DEBUG - Read 111269 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 18:59:31,683 - DEBUG - Read 120272 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 18:59:31,973 - DEBUG - Read 131411 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 18:59:32,216 - DEBUG - Read 101092 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 18:59:32,489 - DEBUG - Read 125106 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 18:59:32,761 - DEBUG - Read 117124 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 18:59:33,020 - DEBUG - Read 105902 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 18:59:33,356 - DEBUG - Read 101435 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 18:59:33,486 - DEBUG - Detected 30389 variants in 102551 reads
2012-10-07 18:59:33,704 - DEBUG - Detected 40949 variants in 112783 reads
2012-10-07 18:59:33,988 - DEBUG - Detected 50473 variants in 129600 reads
2012-10-07 18:59:34,335 - DEBUG - Detected 60361 variants in 130948 reads
2012-10-07 18:59:34,694 - DEBUG - Detected 68528 variants in 123104 reads
2012-10-07 18:59:35,074 - DEBUG - Detected 76467 variants in 118513 reads
2012-10-07 18:59:35,511 - DEBUG - Detected 92057 variants in 124957 reads
2012-10-07 18:59:36,017 - DEBUG - Detected 99177 variants in 114060 reads
2012-10-07 18:59:36,680 - DEBUG - Detected 106198 variants in 108388 reads
2012-10-07 18:59:37,317 - DEBUG - Detected 112413 variants in 107507 reads
2012-10-07 18:59:38,000 - DEBUG - Detected 117562 variants in 120659 reads
2012-10-07 18:59:38,698 - DEBUG - Detected 122637 variants in 109532 reads
2012-10-07 18:59:39,433 - DEBUG - Detected 127715 variants in 111269 reads
2012-10-07 18:59:40,268 - DEBUG - Detected 133032 variants in 120272 reads
2012-10-07 18:59:41,083 - DEBUG - Detected 142614 variants in 131411 reads
2012-10-07 18:59:41,907 - DEBUG - Detected 147420 variants in 101092 reads
2012-10-07 18:59:42,794 - DEBUG - Detected 152451 variants in 125106 reads
2012-10-07 18:59:43,773 - DEBUG - Detected 157041 variants in 117124 reads
2012-10-07 18:59:44,693 - DEBUG - Detected 162135 variants in 105902 reads
2012-10-07 18:59:45,626 - DEBUG - Detected 166444 variants in 101435 reads
2012-10-07 18:59:47,368 - DEBUG - Taking top 8 variants by coverage in window 9:116003539-116003540
2012-10-07 18:59:47,678 - DEBUG - Taking top 8 variants by coverage in window 9:116006339-116006340
2012-10-07 18:59:47,904 - DEBUG - Taking top 8 variants by coverage in window 9:116007145-116007148
2012-10-07 18:59:48,123 - DEBUG - Taking top 8 variants by coverage in window 9:116008476-116008477
2012-10-07 18:59:48,249 - DEBUG - Taking top 8 variants by coverage in window 9:116008613-116008614
2012-10-07 18:59:48,911 - DEBUG - Taking top 8 variants by coverage in window 9:116012452-116012457
2012-10-07 18:59:49,012 - DEBUG - Taking top 8 variants by coverage in window 9:116012647-116012648
2012-10-07 18:59:50,086 - DEBUG - Taking top 8 variants by coverage in window 9:116024761-116024762
2012-10-07 18:59:50,839 - DEBUG - Taking top 8 variants by coverage in window 9:116028995-116028999
2012-10-07 18:59:51,187 - DEBUG - Taking top 8 variants by coverage in window 9:116032698-116032699
2012-10-07 18:59:51,870 - DEBUG - Taking top 8 variants by coverage in window 9:116038069-116038076
2012-10-07 18:59:53,713 - DEBUG - Taking top 8 variants by coverage in window 9:116059584-116059585
2012-10-07 18:59:54,262 - DEBUG - Taking top 8 variants by coverage in window 9:116065245-116065246
2012-10-07 18:59:55,548 - DEBUG - Taking top 8 variants by coverage in window 9:116079104-116079108
2012-10-07 18:59:55,595 - DEBUG - Taking top 8 variants by coverage in window 9:116079138-116079139
2012-10-07 18:59:55,992 - DEBUG - Taking top 8 variants by coverage in window 9:116085510-116085511
2012-10-07 18:59:56,142 - DEBUG - Taking top 8 variants by coverage in window 9:116086178-116086179
2012-10-07 18:59:56,163 - DEBUG - Taking top 8 variants by coverage in window 9:116086181-116086184
2012-10-07 18:59:56,744 - DEBUG - Taking top 8 variants by coverage in window 9:116091616-116091617
2012-10-07 18:59:56,890 - DEBUG - Taking top 8 variants by coverage in window 9:116092846-116092847
2012-10-07 18:59:56,985 - DEBUG - Taking top 8 variants by coverage in window 9:116093383-116093399
2012-10-07 18:59:57,247 - DEBUG - Taking top 8 variants by coverage in window 9:116095525-116095526
2012-10-07 18:59:58,035 - DEBUG - Taking top 8 variants by coverage in window 9:116106912-116106927
2012-10-07 18:59:58,229 - DEBUG - Taking top 8 variants by coverage in window 9:116109536-116109537
2012-10-07 18:59:58,250 - DEBUG - Taking top 8 variants by coverage in window 9:116109557-116109564
2012-10-07 18:59:59,274 - DEBUG - Taking top 8 variants by coverage in window 9:116113774-116113775
2012-10-07 18:59:59,299 - DEBUG - Taking top 8 variants by coverage in window 9:116113798-116113799
2012-10-07 18:59:59,473 - DEBUG - Taking top 8 variants by coverage in window 9:116116471-116116472
2012-10-07 18:59:59,555 - DEBUG - Taking top 8 variants by coverage in window 9:116116734-116116735
2012-10-07 18:59:59,894 - DEBUG - Taking top 8 variants by coverage in window 9:116118447-116118448
2012-10-07 18:59:59,972 - DEBUG - Taking top 8 variants by coverage in window 9:116118631-116118632
2012-10-07 19:00:00,338 - DEBUG - Taking top 8 variants by coverage in window 9:116122241-116122242
2012-10-07 19:00:00,599 - DEBUG - Taking top 8 variants by coverage in window 9:116124410-116124416
2012-10-07 19:00:00,613 - DEBUG - Taking top 8 variants by coverage in window 9:116124420-116124424
2012-10-07 19:00:00,822 - DEBUG - Taking top 8 variants by coverage in window 9:116124505-116124508
2012-10-07 19:00:01,013 - DEBUG - Taking top 8 variants by coverage in window 9:116125379-116125381
2012-10-07 19:00:01,068 - DEBUG - Taking top 8 variants by coverage in window 9:116125660-116125661
2012-10-07 19:00:01,159 - DEBUG - Taking top 8 variants by coverage in window 9:116126715-116126716
2012-10-07 19:00:01,322 - DEBUG - Taking top 8 variants by coverage in window 9:116128364-116128365
2012-10-07 19:00:01,774 - DEBUG - Taking top 8 variants by coverage in window 9:116132948-116132959
2012-10-07 19:00:02,104 - DEBUG - Taking top 8 variants by coverage in window 9:116134365-116134366
2012-10-07 19:00:02,150 - DEBUG - Taking top 8 variants by coverage in window 9:116134371-116134372
2012-10-07 19:00:03,069 - DEBUG - Taking top 8 variants by coverage in window 9:116143147-116143148
2012-10-07 19:00:03,424 - DEBUG - Taking top 8 variants by coverage in window 9:116148638-116148639
2012-10-07 19:00:03,848 - DEBUG - Taking top 8 variants by coverage in window 9:116150329-116150333
2012-10-07 19:00:04,666 - DEBUG - Taking top 8 variants by coverage in window 9:116158536-116158537
2012-10-07 19:00:04,719 - DEBUG - Taking top 8 variants by coverage in window 9:116158560-116158561
2012-10-07 19:00:05,031 - DEBUG - Taking top 8 variants by coverage in window 9:116160651-116160652
2012-10-07 19:00:06,253 - DEBUG - Taking top 8 variants by coverage in window 9:116171896-116171897
2012-10-07 19:00:06,313 - DEBUG - Taking top 8 variants by coverage in window 9:116171926-116171927
2012-10-07 19:00:07,186 - DEBUG - Taking top 8 variants by coverage in window 9:116178969-116178970
2012-10-07 19:00:07,557 - DEBUG - Taking top 8 variants by coverage in window 9:116182744-116182754
2012-10-07 19:00:07,814 - DEBUG - Taking top 8 variants by coverage in window 9:116184736-116184737
2012-10-07 19:00:07,968 - DEBUG - Taking top 8 variants by coverage in window 9:116184874-116184875
2012-10-07 19:00:09,915 - DEBUG - Taking top 8 variants by coverage in window 9:116201537-116201538
2012-10-07 19:00:09,934 - DEBUG - Taking top 8 variants by coverage in window 9:116201541-116201542
2012-10-07 19:00:09,959 - DEBUG - Taking top 8 variants by coverage in window 9:116201543-116201544
2012-10-07 19:00:10,130 - DEBUG - Taking top 8 variants by coverage in window 9:116202981-116202982
2012-10-07 19:00:10,192 - DEBUG - Taking top 8 variants by coverage in window 9:116203635-116203636
2012-10-07 19:00:10,574 - DEBUG - Taking top 8 variants by coverage in window 9:116206157-116206158
2012-10-07 19:00:10,945 - DEBUG - Taking top 8 variants by coverage in window 9:116209384-116209390
2012-10-07 19:00:11,431 - DEBUG - Taking top 8 variants by coverage in window 9:116209870-116209871
2012-10-07 19:00:11,578 - DEBUG - Taking top 8 variants by coverage in window 9:116210027-116210028
2012-10-07 19:00:11,795 - DEBUG - Taking top 8 variants by coverage in window 9:116210368-116210370
2012-10-07 19:00:13,520 - DEBUG - Taking top 8 variants by coverage in window 9:116224463-116224464
2012-10-07 19:00:14,496 - DEBUG - Taking top 8 variants by coverage in window 9:116235541-116235542
2012-10-07 19:00:14,750 - DEBUG - Taking top 8 variants by coverage in window 9:116237850-116237851
2012-10-07 19:00:14,984 - DEBUG - Taking top 8 variants by coverage in window 9:116240263-116240264
2012-10-07 19:00:15,717 - DEBUG - Taking top 8 variants by coverage in window 9:116250853-116250854
2012-10-07 19:00:15,887 - DEBUG - Taking top 8 variants by coverage in window 9:116252794-116252800
2012-10-07 19:00:16,391 - DEBUG - Taking top 8 variants by coverage in window 9:116252918-116252926
2012-10-07 19:00:16,552 - DEBUG - Taking top 8 variants by coverage in window 9:116252954-116252962
2012-10-07 19:00:17,791 - DEBUG - Taking top 8 variants by coverage in window 9:116261499-116261500
2012-10-07 19:00:17,846 - DEBUG - Taking top 8 variants by coverage in window 9:116262197-116262198
2012-10-07 19:00:17,855 - DEBUG - Taking top 8 variants by coverage in window 9:116262222-116262223
2012-10-07 19:00:18,320 - DEBUG - Taking top 8 variants by coverage in window 9:116267999-116268000
2012-10-07 19:00:18,345 - DEBUG - Taking top 8 variants by coverage in window 9:116268022-116268023
2012-10-07 19:00:19,412 - DEBUG - Taking top 8 variants by coverage in window 9:116276478-116276479
2012-10-07 19:00:19,706 - DEBUG - Taking top 8 variants by coverage in window 9:116277889-116277890
2012-10-07 19:00:20,001 - DEBUG - Taking top 8 variants by coverage in window 9:116281225-116281226
2012-10-07 19:00:20,879 - DEBUG - Taking top 8 variants by coverage in window 9:116289696-116289697
2012-10-07 19:00:20,995 - DEBUG - Taking top 8 variants by coverage in window 9:116290753-116290754
2012-10-07 19:00:21,012 - DEBUG - Taking top 8 variants by coverage in window 9:116290765-116290766
2012-10-07 19:00:21,411 - DEBUG - Taking top 8 variants by coverage in window 9:116295082-116295083
2012-10-07 19:00:21,717 - DEBUG - Taking top 8 variants by coverage in window 9:116297511-116297512
2012-10-07 19:00:22,811 - DEBUG - Taking top 8 variants by coverage in window 9:116307170-116307177
2012-10-07 19:00:22,986 - DEBUG - Taking top 8 variants by coverage in window 9:116307200-116307204
2012-10-07 19:00:23,072 - DEBUG - Taking top 8 variants by coverage in window 9:116307242-116307249
2012-10-07 19:00:23,117 - DEBUG - Taking top 8 variants by coverage in window 9:116307250-116307252
2012-10-07 19:00:23,458 - DEBUG - Taking top 8 variants by coverage in window 9:116309004-116309005
2012-10-07 19:00:25,123 - DEBUG - Taking top 8 variants by coverage in window 9:116322960-116322961
2012-10-07 19:00:25,145 - DEBUG - Taking top 8 variants by coverage in window 9:116322965-116322967
2012-10-07 19:00:25,585 - DEBUG - Taking top 8 variants by coverage in window 9:116326148-116326149
2012-10-07 19:00:26,234 - DEBUG - Taking top 8 variants by coverage in window 9:116331650-116331652
2012-10-07 19:00:27,083 - DEBUG - Taking top 8 variants by coverage in window 9:116339365-116339366
2012-10-07 19:00:27,117 - DEBUG - Taking top 8 variants by coverage in window 9:116339373-116339374
2012-10-07 19:00:27,712 - DEBUG - Taking top 8 variants by coverage in window 9:116343011-116343012
2012-10-07 19:00:27,792 - DEBUG - Taking top 8 variants by coverage in window 9:116343789-116343790
2012-10-07 19:00:27,827 - DEBUG - Taking top 8 variants by coverage in window 9:116343819-116343820
2012-10-07 19:00:28,571 - DEBUG - Taking top 8 variants by coverage in window 9:116355275-116355276
2012-10-07 19:00:29,217 - DEBUG - Taking top 8 variants by coverage in window 9:116360429-116360430
2012-10-07 19:00:30,971 - DEBUG - Taking top 8 variants by coverage in window 9:116374156-116374163
2012-10-07 19:00:31,006 - DEBUG - Taking top 8 variants by coverage in window 9:116374194-116374195
2012-10-07 19:00:31,463 - DEBUG - Taking top 8 variants by coverage in window 9:116380133-116380137
2012-10-07 19:00:31,744 - DEBUG - Taking top 8 variants by coverage in window 9:116380295-116380296
2012-10-07 19:00:31,827 - DEBUG - Taking top 8 variants by coverage in window 9:116380609-116380610
2012-10-07 19:00:31,892 - DEBUG - Taking top 8 variants by coverage in window 9:116380642-116380643
2012-10-07 19:00:32,181 - DEBUG - Taking top 8 variants by coverage in window 9:116383209-116383210
2012-10-07 19:00:32,263 - DEBUG - Taking top 8 variants by coverage in window 9:116383705-116383706
2012-10-07 19:00:32,338 - DEBUG - Taking top 8 variants by coverage in window 9:116383718-116383719
2012-10-07 19:00:32,561 - DEBUG - Taking top 8 variants by coverage in window 9:116383779-116383780
2012-10-07 19:00:32,848 - DEBUG - Taking top 8 variants by coverage in window 9:116385868-116385873
2012-10-07 19:00:33,778 - DEBUG - Taking top 8 variants by coverage in window 9:116395086-116395090
2012-10-07 19:00:34,151 - DEBUG - Taking top 8 variants by coverage in window 9:116395929-116395930
2012-10-07 19:00:34,228 - DEBUG - Taking top 8 variants by coverage in window 9:116396163-116396164
2012-10-07 19:00:35,951 - DEBUG - Taking top 8 variants by coverage in window 9:116417398-116417399
2012-10-07 19:00:36,148 - DEBUG - Taking top 8 variants by coverage in window 9:116417883-116417884
2012-10-07 19:00:36,172 - DEBUG - Taking top 8 variants by coverage in window 9:116417900-116417901
2012-10-07 19:00:36,457 - DEBUG - Taking top 8 variants by coverage in window 9:116419381-116419382
2012-10-07 19:00:36,686 - DEBUG - Taking top 8 variants by coverage in window 9:116421259-116421260
2012-10-07 19:00:36,699 - DEBUG - Taking top 8 variants by coverage in window 9:116421282-116421283
2012-10-07 19:00:36,744 - DEBUG - Taking top 8 variants by coverage in window 9:116421438-116421439
2012-10-07 19:00:37,327 - DEBUG - Taking top 8 variants by coverage in window 9:116425980-116425981
2012-10-07 19:00:37,483 - DEBUG - Taking top 8 variants by coverage in window 9:116427438-116427443
2012-10-07 19:00:37,955 - DEBUG - Taking top 8 variants by coverage in window 9:116432169-116432170
2012-10-07 19:00:37,978 - DEBUG - Taking top 8 variants by coverage in window 9:116432171-116432172
2012-10-07 19:00:38,129 - DEBUG - Taking top 8 variants by coverage in window 9:116432677-116432678
2012-10-07 19:00:38,136 - DEBUG - Taking top 8 variants by coverage in window 9:116432680-116432681
2012-10-07 19:00:38,202 - DEBUG - Taking top 8 variants by coverage in window 9:116432846-116432848
2012-10-07 19:00:39,110 - DEBUG - Taking top 8 variants by coverage in window 9:116440133-116440134
2012-10-07 19:00:39,884 - DEBUG - Taking top 8 variants by coverage in window 9:116446947-116446948
2012-10-07 19:00:39,891 - DEBUG - Taking top 8 variants by coverage in window 9:116446949-116446961
2012-10-07 19:00:40,310 - DEBUG - Taking top 8 variants by coverage in window 9:116448902-116448903
2012-10-07 19:00:40,387 - DEBUG - Taking top 8 variants by coverage in window 9:116449880-116449881
2012-10-07 19:00:40,548 - DEBUG - Taking top 8 variants by coverage in window 9:116450665-116450666
2012-10-07 19:00:40,567 - DEBUG - Taking top 8 variants by coverage in window 9:116450668-116450669
2012-10-07 19:00:40,588 - DEBUG - Taking top 8 variants by coverage in window 9:116450670-116450671
2012-10-07 19:00:41,058 - DEBUG - Taking top 8 variants by coverage in window 9:116455529-116455551
2012-10-07 19:00:41,412 - DEBUG - Taking top 8 variants by coverage in window 9:116459561-116459570
2012-10-07 19:00:41,567 - DEBUG - Taking top 8 variants by coverage in window 9:116460847-116460852
2012-10-07 19:00:42,082 - DEBUG - Taking top 8 variants by coverage in window 9:116466198-116466207
2012-10-07 19:00:42,151 - DEBUG - Taking top 8 variants by coverage in window 9:116466250-116466251
2012-10-07 19:00:42,376 - DEBUG - Taking top 8 variants by coverage in window 9:116468065-116468066
2012-10-07 19:00:43,547 - DEBUG - Taking top 8 variants by coverage in window 9:116488131-116488132
2012-10-07 19:00:43,572 - DEBUG - Taking top 8 variants by coverage in window 9:116488147-116488148
2012-10-07 19:00:44,779 - DEBUG - Taking top 8 variants by coverage in window 9:116504181-116504182
2012-10-07 19:00:45,133 - DEBUG - Taking top 8 variants by coverage in window 9:116507916-116507917
2012-10-07 19:00:45,172 - DEBUG - Taking top 8 variants by coverage in window 9:116507991-116507993
2012-10-07 19:00:45,253 - DEBUG - Taking top 8 variants by coverage in window 9:116509300-116509301
2012-10-07 19:00:45,422 - DEBUG - Taking top 8 variants by coverage in window 9:116510669-116510670
2012-10-07 19:00:45,508 - DEBUG - Taking top 8 variants by coverage in window 9:116512042-116512043
2012-10-07 19:00:45,736 - DEBUG - Taking top 8 variants by coverage in window 9:116514572-116514574
2012-10-07 19:00:45,981 - DEBUG - Taking top 8 variants by coverage in window 9:116517419-116517421
2012-10-07 19:00:46,067 - DEBUG - Taking top 8 variants by coverage in window 9:116517596-116517597
2012-10-07 19:00:46,190 - DEBUG - Taking top 8 variants by coverage in window 9:116517809-116517810
2012-10-07 19:00:46,348 - DEBUG - Taking top 8 variants by coverage in window 9:116518008-116518009
2012-10-07 19:00:46,401 - DEBUG - Taking top 8 variants by coverage in window 9:116518035-116518036
2012-10-07 19:00:47,233 - DEBUG - Taking top 8 variants by coverage in window 9:116526204-116526205
2012-10-07 19:00:47,318 - DEBUG - Taking top 8 variants by coverage in window 9:116526239-116526240
2012-10-07 19:00:47,546 - DEBUG - Taking top 8 variants by coverage in window 9:116527651-116527652
2012-10-07 19:00:47,592 - DEBUG - Taking top 8 variants by coverage in window 9:116527665-116527666
2012-10-07 19:00:48,739 - DEBUG - Taking top 8 variants by coverage in window 9:116535328-116535329
2012-10-07 19:00:49,075 - DEBUG - Taking top 8 variants by coverage in window 9:116538387-116538388
2012-10-07 19:00:49,770 - DEBUG - Taking top 8 variants by coverage in window 9:116546468-116546469
2012-10-07 19:00:49,879 - DEBUG - Taking top 8 variants by coverage in window 9:116547159-116547160
2012-10-07 19:00:50,027 - DEBUG - Taking top 8 variants by coverage in window 9:116549962-116549963
2012-10-07 19:00:50,428 - DEBUG - Taking top 8 variants by coverage in window 9:116554955-116554956
2012-10-07 19:00:50,685 - DEBUG - Taking top 8 variants by coverage in window 9:116557513-116557514
2012-10-07 19:00:50,901 - DEBUG - Taking top 8 variants by coverage in window 9:116560618-116560623
2012-10-07 19:00:51,000 - DEBUG - Taking top 8 variants by coverage in window 9:116561766-116561767
2012-10-07 19:00:51,059 - DEBUG - Taking top 8 variants by coverage in window 9:116561784-116561785
2012-10-07 19:00:51,128 - DEBUG - Taking top 8 variants by coverage in window 9:116561805-116561807
2012-10-07 19:00:51,172 - DEBUG - Taking top 8 variants by coverage in window 9:116561809-116561810
2012-10-07 19:00:52,057 - DEBUG - Taking top 8 variants by coverage in window 9:116571689-116571693
2012-10-07 19:00:52,102 - DEBUG - Taking top 8 variants by coverage in window 9:116571708-116571709
2012-10-07 19:00:52,222 - DEBUG - Taking top 8 variants by coverage in window 9:116573303-116573304
2012-10-07 19:00:52,326 - DEBUG - Taking top 8 variants by coverage in window 9:116574949-116574950
2012-10-07 19:00:53,053 - DEBUG - Taking top 8 variants by coverage in window 9:116583529-116583530
2012-10-07 19:00:53,101 - DEBUG - Taking top 8 variants by coverage in window 9:116583532-116583533
2012-10-07 19:00:53,429 - DEBUG - Taking top 8 variants by coverage in window 9:116588156-116588157
2012-10-07 19:00:53,510 - DEBUG - Taking top 8 variants by coverage in window 9:116589057-116589058
2012-10-07 19:00:53,563 - DEBUG - Taking top 8 variants by coverage in window 9:116589441-116589442
2012-10-07 19:00:53,571 - DEBUG - Taking top 8 variants by coverage in window 9:116589470-116589471
2012-10-07 19:00:53,612 - DEBUG - Taking top 8 variants by coverage in window 9:116589950-116589952
2012-10-07 19:00:54,429 - DEBUG - Taking top 8 variants by coverage in window 9:116603130-116603131
2012-10-07 19:00:54,530 - DEBUG - Taking top 8 variants by coverage in window 9:116604441-116604442
2012-10-07 19:00:55,224 - DEBUG - Taking top 8 variants by coverage in window 9:116613934-116613938
2012-10-07 19:00:55,423 - DEBUG - Taking top 8 variants by coverage in window 9:116615835-116615836
2012-10-07 19:00:55,837 - DEBUG - Taking top 8 variants by coverage in window 9:116622022-116622023
2012-10-07 19:00:56,215 - DEBUG - Taking top 8 variants by coverage in window 9:116624227-116624228
2012-10-07 19:00:56,626 - DEBUG - Taking top 8 variants by coverage in window 9:116624393-116624395
2012-10-07 19:00:56,672 - DEBUG - Taking top 8 variants by coverage in window 9:116624414-116624415
2012-10-07 19:00:57,547 - DEBUG - Taking top 8 variants by coverage in window 9:116632046-116632047
2012-10-07 19:00:57,558 - DEBUG - Taking top 8 variants by coverage in window 9:116632079-116632080
2012-10-07 19:00:59,260 - DEBUG - Taking top 8 variants by coverage in window 9:116655184-116655196
2012-10-07 19:00:59,594 - DEBUG - Taking top 8 variants by coverage in window 9:116657185-116657186
2012-10-07 19:00:59,729 - DEBUG - Taking top 8 variants by coverage in window 9:116658137-116658138
2012-10-07 19:00:59,756 - DEBUG - Taking top 8 variants by coverage in window 9:116658855-116658856
2012-10-07 19:00:59,794 - DEBUG - Taking top 8 variants by coverage in window 9:116659101-116659105
2012-10-07 19:01:00,348 - DEBUG - Taking top 8 variants by coverage in window 9:116667868-116667869
2012-10-07 19:01:00,528 - DEBUG - Taking top 8 variants by coverage in window 9:116671139-116671142
2012-10-07 19:01:00,630 - DEBUG - Taking top 8 variants by coverage in window 9:116671254-116671255
2012-10-07 19:01:00,844 - DEBUG - Taking top 8 variants by coverage in window 9:116671694-116671695
2012-10-07 19:01:00,973 - DEBUG - Taking top 8 variants by coverage in window 9:116673176-116673177
2012-10-07 19:01:01,982 - DEBUG - Taking top 8 variants by coverage in window 9:116682985-116682986
2012-10-07 19:01:02,002 - DEBUG - Taking top 8 variants by coverage in window 9:116683001-116683002
2012-10-07 19:01:02,148 - DEBUG - Taking top 8 variants by coverage in window 9:116683243-116683244
2012-10-07 19:01:02,533 - DEBUG - Taking top 8 variants by coverage in window 9:116687845-116687846
2012-10-07 19:01:02,995 - DEBUG - Taking top 8 variants by coverage in window 9:116690773-116690775
2012-10-07 19:01:03,005 - DEBUG - Taking top 8 variants by coverage in window 9:116690785-116690786
2012-10-07 19:01:03,070 - DEBUG - Taking top 8 variants by coverage in window 9:116690853-116690854
2012-10-07 19:01:03,679 - DEBUG - Taking top 8 variants by coverage in window 9:116697646-116697647
2012-10-07 19:01:03,713 - DEBUG - Taking top 8 variants by coverage in window 9:116697757-116697760
2012-10-07 19:01:04,105 - DEBUG - Taking top 8 variants by coverage in window 9:116705357-116705358
2012-10-07 19:01:05,313 - DEBUG - Taking top 8 variants by coverage in window 9:116719275-116719276
2012-10-07 19:01:05,660 - DEBUG - Taking top 8 variants by coverage in window 9:116722655-116722656
2012-10-07 19:01:06,931 - DEBUG - Taking top 8 variants by coverage in window 9:116735964-116735965
2012-10-07 19:01:07,137 - DEBUG - Taking top 8 variants by coverage in window 9:116740036-116740037
2012-10-07 19:01:08,728 - DEBUG - Taking top 8 variants by coverage in window 9:116748927-116748928
2012-10-07 19:01:08,744 - DEBUG - Taking top 8 variants by coverage in window 9:116748929-116748934
2012-10-07 19:01:09,103 - DEBUG - Taking top 8 variants by coverage in window 9:116749397-116749403
2012-10-07 19:01:09,347 - DEBUG - Taking top 8 variants by coverage in window 9:116749613-116749614
2012-10-07 19:01:09,562 - DEBUG - Taking top 8 variants by coverage in window 9:116750989-116750990
2012-10-07 19:01:09,647 - DEBUG - Taking top 8 variants by coverage in window 9:116751549-116751556
2012-10-07 19:01:10,160 - DEBUG - Taking top 8 variants by coverage in window 9:116756280-116756281
2012-10-07 19:01:11,708 - DEBUG - Taking top 8 variants by coverage in window 9:116767272-116767273
2012-10-07 19:01:11,773 - DEBUG - Taking top 8 variants by coverage in window 9:116767661-116767663
2012-10-07 19:01:11,982 - DEBUG - Taking top 8 variants by coverage in window 9:116767693-116767694
2012-10-07 19:01:13,025 - DEBUG - Taking top 8 variants by coverage in window 9:116775022-116775024
2012-10-07 19:01:13,604 - DEBUG - Taking top 8 variants by coverage in window 9:116781800-116781802
2012-10-07 19:01:13,634 - DEBUG - Taking top 8 variants by coverage in window 9:116781867-116781868
2012-10-07 19:01:13,948 - DEBUG - Taking top 8 variants by coverage in window 9:116787463-116787464
2012-10-07 19:01:14,471 - DEBUG - Taking top 8 variants by coverage in window 9:116793206-116793211
2012-10-07 19:01:14,968 - DEBUG - Taking top 8 variants by coverage in window 9:116799142-116799153
2012-10-07 19:01:15,002 - DEBUG - Taking top 8 variants by coverage in window 9:116799174-116799175
2012-10-07 19:01:15,026 - DEBUG - Taking top 8 variants by coverage in window 9:116799180-116799181
2012-10-07 19:01:15,124 - DEBUG - Taking top 8 variants by coverage in window 9:116799672-116799673
2012-10-07 19:01:15,206 - DEBUG - Taking top 8 variants by coverage in window 9:116800315-116800325
2012-10-07 19:01:16,081 - DEBUG - Taking top 8 variants by coverage in window 9:116809205-116809206
2012-10-07 19:01:16,635 - DEBUG - Taking top 8 variants by coverage in window 9:116813308-116813309
2012-10-07 19:01:16,883 - DEBUG - Taking top 8 variants by coverage in window 9:116815084-116815085
2012-10-07 19:01:16,896 - DEBUG - Taking top 8 variants by coverage in window 9:116815111-116815112
2012-10-07 19:01:17,022 - DEBUG - Taking top 8 variants by coverage in window 9:116816467-116816468
2012-10-07 19:01:17,096 - DEBUG - Taking top 8 variants by coverage in window 9:116816887-116816888
2012-10-07 19:01:17,652 - DEBUG - Taking top 8 variants by coverage in window 9:116816963-116816973
2012-10-07 19:01:18,120 - DEBUG - Taking top 8 variants by coverage in window 9:116818522-116818523
2012-10-07 19:01:18,327 - DEBUG - Taking top 8 variants by coverage in window 9:116819773-116819774
2012-10-07 19:01:18,800 - DEBUG - Taking top 8 variants by coverage in window 9:116825414-116825415
2012-10-07 19:01:18,824 - DEBUG - Taking top 8 variants by coverage in window 9:116825416-116825417
2012-10-07 19:01:19,256 - DEBUG - Taking top 8 variants by coverage in window 9:116828068-116828069
2012-10-07 19:01:19,376 - DEBUG - Taking top 8 variants by coverage in window 9:116828165-116828171
2012-10-07 19:01:20,544 - DEBUG - Taking top 8 variants by coverage in window 9:116831612-116831618
2012-10-07 19:01:20,951 - DEBUG - Taking top 8 variants by coverage in window 9:116834284-116834285
2012-10-07 19:01:21,007 - DEBUG - Taking top 8 variants by coverage in window 9:116834385-116834386
2012-10-07 19:01:21,300 - DEBUG - Taking top 8 variants by coverage in window 9:116836052-116836053
2012-10-07 19:01:21,626 - DEBUG - Taking top 8 variants by coverage in window 9:116837626-116837627
2012-10-07 19:01:21,654 - DEBUG - Taking top 8 variants by coverage in window 9:116837639-116837640
2012-10-07 19:01:21,744 - DEBUG - Taking top 8 variants by coverage in window 9:116837684-116837685
2012-10-07 19:01:22,081 - DEBUG - Taking top 8 variants by coverage in window 9:116839758-116839759
2012-10-07 19:01:22,124 - DEBUG - Taking top 8 variants by coverage in window 9:116839789-116839790
2012-10-07 19:01:22,134 - DEBUG - Taking top 8 variants by coverage in window 9:116839790-116839795
2012-10-07 19:01:23,508 - DEBUG - Taking top 8 variants by coverage in window 9:116843096-116843097
2012-10-07 19:01:23,782 - DEBUG - Taking top 8 variants by coverage in window 9:116845382-116845383
2012-10-07 19:01:23,893 - DEBUG - Taking top 8 variants by coverage in window 9:116846457-116846458
2012-10-07 19:01:23,906 - DEBUG - Taking top 8 variants by coverage in window 9:116846475-116846477
2012-10-07 19:01:24,643 - DEBUG - Taking top 8 variants by coverage in window 9:116850832-116850833
2012-10-07 19:01:25,687 - DEBUG - Taking top 8 variants by coverage in window 9:116859729-116859735
2012-10-07 19:01:26,363 - DEBUG - Taking top 8 variants by coverage in window 9:116866245-116866246
2012-10-07 19:01:27,026 - DEBUG - Taking top 8 variants by coverage in window 9:116870564-116870565
2012-10-07 19:01:27,650 - DEBUG - Taking top 8 variants by coverage in window 9:116874217-116874218
2012-10-07 19:01:27,836 - DEBUG - Taking top 8 variants by coverage in window 9:116875498-116875500
2012-10-07 19:01:27,929 - DEBUG - Taking top 8 variants by coverage in window 9:116875502-116875503
2012-10-07 19:01:28,718 - DEBUG - Taking top 8 variants by coverage in window 9:116878405-116878409
2012-10-07 19:01:30,206 - DEBUG - Taking top 8 variants by coverage in window 9:116889202-116889206
2012-10-07 19:01:30,559 - DEBUG - Taking top 8 variants by coverage in window 9:116897775-116897776
2012-10-07 19:01:30,768 - DEBUG - Taking top 8 variants by coverage in window 9:116899629-116899630
2012-10-07 19:01:30,846 - DEBUG - Taking top 8 variants by coverage in window 9:116899916-116899917
2012-10-07 19:01:31,360 - DEBUG - Taking top 8 variants by coverage in window 9:116904917-116904919
2012-10-07 19:01:31,600 - DEBUG - Taking top 8 variants by coverage in window 9:116907756-116907761
2012-10-07 19:01:31,960 - DEBUG - Taking top 8 variants by coverage in window 9:116908869-116908870
2012-10-07 19:01:32,588 - DEBUG - Taking top 8 variants by coverage in window 9:116914562-116914570
2012-10-07 19:01:33,560 - DEBUG - Taking top 8 variants by coverage in window 9:116922206-116922207
2012-10-07 19:01:35,487 - DEBUG - Taking top 8 variants by coverage in window 9:116940576-116940577
2012-10-07 19:01:36,299 - DEBUG - Taking top 8 variants by coverage in window 9:116948931-116948943
2012-10-07 19:01:36,531 - DEBUG - Taking top 8 variants by coverage in window 9:116951556-116951557
2012-10-07 19:01:36,779 - DEBUG - Taking top 8 variants by coverage in window 9:116953527-116953528
2012-10-07 19:01:36,940 - DEBUG - Taking top 8 variants by coverage in window 9:116954602-116954603
2012-10-07 19:01:37,115 - DEBUG - Taking top 8 variants by coverage in window 9:116955562-116955563
2012-10-07 19:01:38,182 - DEBUG - Taking top 8 variants by coverage in window 9:116963937-116963938
2012-10-07 19:01:38,638 - DEBUG - Taking top 8 variants by coverage in window 9:116970306-116970310
2012-10-07 19:01:39,020 - DEBUG - Taking top 8 variants by coverage in window 9:116976661-116976662
2012-10-07 19:01:39,668 - DEBUG - Taking top 8 variants by coverage in window 9:116984073-116984074
2012-10-07 19:01:39,686 - DEBUG - Taking top 8 variants by coverage in window 9:116984075-116984076
2012-10-07 19:01:40,027 - DEBUG - Taking top 8 variants by coverage in window 9:116988131-116988133
2012-10-07 19:01:40,106 - DEBUG - Taking top 8 variants by coverage in window 9:116988611-116988616
2012-10-07 19:01:40,139 - DEBUG - Taking top 8 variants by coverage in window 9:116988629-116988630
2012-10-07 19:01:40,369 - DEBUG - Taking top 8 variants by coverage in window 9:116993756-116993757
2012-10-07 19:01:41,751 - DEBUG - Read 101250 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 19:01:42,017 - DEBUG - Read 111486 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 19:01:42,297 - DEBUG - Read 127591 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 19:01:42,614 - DEBUG - Read 130005 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 19:01:42,915 - DEBUG - Read 121465 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 19:01:43,214 - DEBUG - Read 116809 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 19:01:43,530 - DEBUG - Read 122041 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 19:01:43,814 - DEBUG - Read 111255 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 19:01:44,074 - DEBUG - Read 108296 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 19:01:44,335 - DEBUG - Read 106833 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 19:01:44,617 - DEBUG - Read 119604 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 19:01:44,869 - DEBUG - Read 109628 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 19:01:45,133 - DEBUG - Read 110971 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 19:01:45,394 - DEBUG - Read 119732 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 19:01:45,682 - DEBUG - Read 129186 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 19:01:45,962 - DEBUG - Read 101993 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 19:01:46,242 - DEBUG - Read 124752 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 19:01:46,522 - DEBUG - Read 117435 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 19:01:46,763 - DEBUG - Read 104495 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 19:01:47,012 - DEBUG - Read 101127 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 19:01:47,140 - DEBUG - Detected 29385 variants in 101250 reads
2012-10-07 19:01:47,375 - DEBUG - Detected 44703 variants in 111486 reads
2012-10-07 19:01:47,676 - DEBUG - Detected 57187 variants in 127591 reads
2012-10-07 19:01:48,036 - DEBUG - Detected 66965 variants in 130005 reads
2012-10-07 19:01:48,430 - DEBUG - Detected 75637 variants in 121465 reads
2012-10-07 19:01:48,860 - DEBUG - Detected 82538 variants in 116809 reads
2012-10-07 19:01:49,377 - DEBUG - Detected 97600 variants in 122041 reads
2012-10-07 19:01:49,917 - DEBUG - Detected 104348 variants in 111255 reads
2012-10-07 19:01:50,490 - DEBUG - Detected 112129 variants in 108296 reads
2012-10-07 19:01:51,103 - DEBUG - Detected 118709 variants in 106833 reads
2012-10-07 19:01:51,760 - DEBUG - Detected 124268 variants in 119604 reads
2012-10-07 19:01:52,487 - DEBUG - Detected 129278 variants in 109628 reads
2012-10-07 19:01:53,186 - DEBUG - Detected 134150 variants in 110971 reads
2012-10-07 19:01:53,923 - DEBUG - Detected 139322 variants in 119732 reads
2012-10-07 19:01:54,706 - DEBUG - Detected 148007 variants in 129186 reads
2012-10-07 19:01:55,561 - DEBUG - Detected 152980 variants in 101993 reads
2012-10-07 19:01:56,407 - DEBUG - Detected 158052 variants in 124752 reads
2012-10-07 19:01:57,275 - DEBUG - Detected 162769 variants in 117435 reads
2012-10-07 19:01:58,115 - DEBUG - Detected 168138 variants in 104495 reads
2012-10-07 19:01:59,009 - DEBUG - Detected 172769 variants in 101127 reads
2012-10-07 19:02:01,218 - DEBUG - Taking top 8 variants by coverage in window 9:117008174-117008175
2012-10-07 19:02:01,257 - DEBUG - Taking top 8 variants by coverage in window 9:117008354-117008355
2012-10-07 19:02:01,558 - DEBUG - Taking top 8 variants by coverage in window 9:117010851-117010857
2012-10-07 19:02:02,211 - DEBUG - Taking top 8 variants by coverage in window 9:117015982-117015983
2012-10-07 19:02:02,231 - DEBUG - Taking top 8 variants by coverage in window 9:117015986-117015987
2012-10-07 19:02:02,289 - DEBUG - Taking top 8 variants by coverage in window 9:117016019-117016020
2012-10-07 19:02:02,348 - DEBUG - Taking top 8 variants by coverage in window 9:117016022-117016029
2012-10-07 19:02:02,640 - DEBUG - Taking top 8 variants by coverage in window 9:117016065-117016066
2012-10-07 19:02:02,751 - DEBUG - Taking top 8 variants by coverage in window 9:117016111-117016112
2012-10-07 19:02:04,243 - DEBUG - Taking top 8 variants by coverage in window 9:117023431-117023435
2012-10-07 19:02:05,168 - DEBUG - Taking top 8 variants by coverage in window 9:117031570-117031572
2012-10-07 19:02:06,399 - DEBUG - Taking top 8 variants by coverage in window 9:117038920-117038929
2012-10-07 19:02:06,722 - DEBUG - Taking top 8 variants by coverage in window 9:117039140-117039148
2012-10-07 19:02:07,114 - DEBUG - Taking top 8 variants by coverage in window 9:117043603-117043604
2012-10-07 19:02:07,412 - DEBUG - Taking top 8 variants by coverage in window 9:117047000-117047003
2012-10-07 19:02:07,524 - DEBUG - Taking top 8 variants by coverage in window 9:117047412-117047413
2012-10-07 19:02:07,729 - DEBUG - Taking top 8 variants by coverage in window 9:117048056-117048057
2012-10-07 19:02:08,007 - DEBUG - Taking top 8 variants by coverage in window 9:117049989-117049990
2012-10-07 19:02:08,024 - DEBUG - Taking top 8 variants by coverage in window 9:117049990-117049991
2012-10-07 19:02:09,876 - DEBUG - Taking top 8 variants by coverage in window 9:117068438-117068439
2012-10-07 19:02:10,165 - DEBUG - Taking top 8 variants by coverage in window 9:117069396-117069403
2012-10-07 19:02:10,315 - DEBUG - Taking top 8 variants by coverage in window 9:117070366-117070367
2012-10-07 19:02:10,636 - DEBUG - Taking top 8 variants by coverage in window 9:117073415-117073416
2012-10-07 19:02:10,823 - DEBUG - Taking top 8 variants by coverage in window 9:117074674-117074675
2012-10-07 19:02:11,387 - DEBUG - Taking top 8 variants by coverage in window 9:117082537-117082538
2012-10-07 19:02:11,554 - DEBUG - Taking top 8 variants by coverage in window 9:117084557-117084558
2012-10-07 19:02:11,792 - DEBUG - Taking top 8 variants by coverage in window 9:117087609-117087614
2012-10-07 19:02:12,458 - DEBUG - Taking top 8 variants by coverage in window 9:117095676-117095677
2012-10-07 19:02:12,464 - DEBUG - Taking top 8 variants by coverage in window 9:117095704-117095706
2012-10-07 19:02:13,265 - DEBUG - Taking top 8 variants by coverage in window 9:117105017-117105018
2012-10-07 19:02:13,757 - DEBUG - Taking top 8 variants by coverage in window 9:117108480-117108489
2012-10-07 19:02:13,886 - DEBUG - Taking top 8 variants by coverage in window 9:117108789-117108792
2012-10-07 19:02:14,087 - DEBUG - Taking top 8 variants by coverage in window 9:117110294-117110295
2012-10-07 19:02:14,548 - DEBUG - Taking top 8 variants by coverage in window 9:117113912-117113913
2012-10-07 19:02:14,705 - DEBUG - Taking top 8 variants by coverage in window 9:117115812-117115813
2012-10-07 19:02:14,863 - DEBUG - Taking top 8 variants by coverage in window 9:117117528-117117550
2012-10-07 19:02:15,307 - DEBUG - Taking top 8 variants by coverage in window 9:117121671-117121672
2012-10-07 19:02:15,515 - DEBUG - Taking top 8 variants by coverage in window 9:117124691-117124697
2012-10-07 19:02:15,600 - DEBUG - Taking top 8 variants by coverage in window 9:117125329-117125358
2012-10-07 19:02:15,709 - DEBUG - Taking top 8 variants by coverage in window 9:117126028-117126030
2012-10-07 19:02:17,533 - DEBUG - Taking top 8 variants by coverage in window 9:117138031-117138032
2012-10-07 19:02:17,881 - DEBUG - Taking top 8 variants by coverage in window 9:117140356-117140358
2012-10-07 19:02:18,107 - DEBUG - Taking top 8 variants by coverage in window 9:117141156-117141157
2012-10-07 19:02:18,393 - DEBUG - Taking top 8 variants by coverage in window 9:117142847-117142848
2012-10-07 19:02:18,698 - DEBUG - Taking top 8 variants by coverage in window 9:117144317-117144327
2012-10-07 19:02:19,065 - DEBUG - Taking top 8 variants by coverage in window 9:117145225-117145227
2012-10-07 19:02:19,094 - DEBUG - Taking top 8 variants by coverage in window 9:117145247-117145255
2012-10-07 19:02:19,338 - DEBUG - Taking top 8 variants by coverage in window 9:117146214-117146215
2012-10-07 19:02:19,353 - DEBUG - Taking top 8 variants by coverage in window 9:117146236-117146237
2012-10-07 19:02:20,326 - DEBUG - Taking top 8 variants by coverage in window 9:117155681-117155686
2012-10-07 19:02:20,381 - DEBUG - Taking top 8 variants by coverage in window 9:117155718-117155722
2012-10-07 19:02:20,583 - DEBUG - Taking top 8 variants by coverage in window 9:117159015-117159016
2012-10-07 19:02:20,694 - DEBUG - Taking top 8 variants by coverage in window 9:117162020-117162021
2012-10-07 19:02:20,775 - DEBUG - Taking top 8 variants by coverage in window 9:117163010-117163011
2012-10-07 19:02:21,242 - DEBUG - Taking top 8 variants by coverage in window 9:117168147-117168156
2012-10-07 19:02:21,324 - DEBUG - Taking top 8 variants by coverage in window 9:117168185-117168187
2012-10-07 19:02:21,435 - DEBUG - Taking top 8 variants by coverage in window 9:117168209-117168213
2012-10-07 19:02:21,621 - DEBUG - Taking top 8 variants by coverage in window 9:117168245-117168248
2012-10-07 19:02:21,879 - DEBUG - Taking top 8 variants by coverage in window 9:117168291-117168295
2012-10-07 19:02:22,416 - DEBUG - Taking top 8 variants by coverage in window 9:117171029-117171030
2012-10-07 19:02:22,518 - DEBUG - Taking top 8 variants by coverage in window 9:117171451-117171459
2012-10-07 19:02:23,044 - DEBUG - Taking top 8 variants by coverage in window 9:117174352-117174353
2012-10-07 19:02:23,178 - DEBUG - Taking top 8 variants by coverage in window 9:117174374-117174375
2012-10-07 19:02:23,210 - DEBUG - Taking top 8 variants by coverage in window 9:117174377-117174378
2012-10-07 19:02:23,365 - DEBUG - Taking top 8 variants by coverage in window 9:117175087-117175088
2012-10-07 19:02:23,498 - DEBUG - Taking top 8 variants by coverage in window 9:117175100-117175103
2012-10-07 19:02:23,528 - DEBUG - Taking top 8 variants by coverage in window 9:117175114-117175115
2012-10-07 19:02:23,613 - DEBUG - Taking top 8 variants by coverage in window 9:117175937-117175938
2012-10-07 19:02:25,044 - DEBUG - Taking top 8 variants by coverage in window 9:117187015-117187023
2012-10-07 19:02:25,089 - DEBUG - Taking top 8 variants by coverage in window 9:117187029-117187030
2012-10-07 19:02:25,291 - DEBUG - Taking top 8 variants by coverage in window 9:117187837-117187840
2012-10-07 19:02:25,476 - DEBUG - Taking top 8 variants by coverage in window 9:117190108-117190109
2012-10-07 19:02:25,852 - DEBUG - Taking top 8 variants by coverage in window 9:117194371-117194372
2012-10-07 19:02:26,195 - DEBUG - Taking top 8 variants by coverage in window 9:117195044-117195047
2012-10-07 19:02:26,380 - DEBUG - Taking top 8 variants by coverage in window 9:117195229-117195236
2012-10-07 19:02:27,740 - DEBUG - Taking top 8 variants by coverage in window 9:117197595-117197596
2012-10-07 19:02:27,760 - DEBUG - Taking top 8 variants by coverage in window 9:117197615-117197616
2012-10-07 19:02:28,385 - DEBUG - Taking top 8 variants by coverage in window 9:117203839-117203840
2012-10-07 19:02:28,535 - DEBUG - Taking top 8 variants by coverage in window 9:117204280-117204281
2012-10-07 19:02:28,569 - DEBUG - Taking top 8 variants by coverage in window 9:117204352-117204353
2012-10-07 19:02:29,144 - DEBUG - Taking top 8 variants by coverage in window 9:117211992-117211993
2012-10-07 19:02:29,221 - DEBUG - Taking top 8 variants by coverage in window 9:117213085-117213086
2012-10-07 19:02:29,235 - DEBUG - Taking top 8 variants by coverage in window 9:117213093-117213094
2012-10-07 19:02:29,291 - DEBUG - Taking top 8 variants by coverage in window 9:117213386-117213387
2012-10-07 19:02:29,577 - DEBUG - Taking top 8 variants by coverage in window 9:117215838-117215839
2012-10-07 19:02:29,694 - DEBUG - Taking top 8 variants by coverage in window 9:117216916-117216926
2012-10-07 19:02:29,844 - DEBUG - Taking top 8 variants by coverage in window 9:117217185-117217195
2012-10-07 19:02:30,045 - DEBUG - Taking top 8 variants by coverage in window 9:117217373-117217374
2012-10-07 19:02:30,218 - DEBUG - Taking top 8 variants by coverage in window 9:117218807-117218809
2012-10-07 19:02:30,592 - DEBUG - Taking top 8 variants by coverage in window 9:117220666-117220667
2012-10-07 19:02:31,451 - DEBUG - Taking top 8 variants by coverage in window 9:117226918-117226919
2012-10-07 19:02:31,757 - DEBUG - Taking top 8 variants by coverage in window 9:117231557-117231558
2012-10-07 19:02:33,277 - DEBUG - Taking top 8 variants by coverage in window 9:117246027-117246028
2012-10-07 19:02:33,289 - DEBUG - Taking top 8 variants by coverage in window 9:117246028-117246029
2012-10-07 19:02:33,894 - DEBUG - Taking top 8 variants by coverage in window 9:117254041-117254042
2012-10-07 19:02:34,017 - DEBUG - Taking top 8 variants by coverage in window 9:117255228-117255229
2012-10-07 19:02:34,604 - DEBUG - Taking top 8 variants by coverage in window 9:117263367-117263368
2012-10-07 19:02:34,922 - DEBUG - Taking top 8 variants by coverage in window 9:117268012-117268013
2012-10-07 19:02:35,502 - DEBUG - Taking top 8 variants by coverage in window 9:117275497-117275498
2012-10-07 19:02:35,523 - DEBUG - Taking top 8 variants by coverage in window 9:117275518-117275519
2012-10-07 19:02:35,719 - DEBUG - Taking top 8 variants by coverage in window 9:117277447-117277448
2012-10-07 19:02:36,157 - DEBUG - Taking top 8 variants by coverage in window 9:117280109-117280110
2012-10-07 19:02:36,262 - DEBUG - Taking top 8 variants by coverage in window 9:117280229-117280232
2012-10-07 19:02:36,535 - DEBUG - Taking top 8 variants by coverage in window 9:117280846-117280847
2012-10-07 19:02:36,606 - DEBUG - Taking top 8 variants by coverage in window 9:117280875-117280876
2012-10-07 19:02:36,902 - DEBUG - Taking top 8 variants by coverage in window 9:117283733-117283734
2012-10-07 19:02:37,869 - DEBUG - Taking top 8 variants by coverage in window 9:117292433-117292435
2012-10-07 19:02:37,950 - DEBUG - Taking top 8 variants by coverage in window 9:117293485-117293488
2012-10-07 19:02:38,377 - DEBUG - Taking top 8 variants by coverage in window 9:117296857-117296859
2012-10-07 19:02:38,410 - DEBUG - Taking top 8 variants by coverage in window 9:117296888-117296889
2012-10-07 19:02:39,416 - DEBUG - Taking top 8 variants by coverage in window 9:117305711-117305712
2012-10-07 19:02:39,451 - DEBUG - Taking top 8 variants by coverage in window 9:117305730-117305731
2012-10-07 19:02:39,873 - DEBUG - Taking top 8 variants by coverage in window 9:117308926-117308927
2012-10-07 19:02:40,089 - DEBUG - Taking top 8 variants by coverage in window 9:117311190-117311191
2012-10-07 19:02:40,113 - DEBUG - Taking top 8 variants by coverage in window 9:117311212-117311213
2012-10-07 19:02:40,142 - DEBUG - Taking top 8 variants by coverage in window 9:117311226-117311227
2012-10-07 19:02:41,592 - DEBUG - Taking top 8 variants by coverage in window 9:117322933-117322941
2012-10-07 19:02:41,695 - DEBUG - Taking top 8 variants by coverage in window 9:117322950-117322951
2012-10-07 19:02:41,854 - DEBUG - Taking top 8 variants by coverage in window 9:117323494-117323502
2012-10-07 19:02:42,085 - DEBUG - Taking top 8 variants by coverage in window 9:117324633-117324640
2012-10-07 19:02:42,512 - DEBUG - Taking top 8 variants by coverage in window 9:117326552-117326553
2012-10-07 19:02:43,025 - DEBUG - Taking top 8 variants by coverage in window 9:117329964-117329965
2012-10-07 19:02:43,730 - DEBUG - Taking top 8 variants by coverage in window 9:117336335-117336336
2012-10-07 19:02:43,863 - DEBUG - Taking top 8 variants by coverage in window 9:117336737-117336738
2012-10-07 19:02:44,319 - DEBUG - Taking top 8 variants by coverage in window 9:117339864-117339866
2012-10-07 19:02:44,456 - DEBUG - Taking top 8 variants by coverage in window 9:117340173-117340177
2012-10-07 19:02:45,866 - DEBUG - Taking top 8 variants by coverage in window 9:117355196-117355197
2012-10-07 19:02:46,058 - DEBUG - Taking top 8 variants by coverage in window 9:117357121-117357122
2012-10-07 19:02:46,874 - DEBUG - Taking top 8 variants by coverage in window 9:117369377-117369378
2012-10-07 19:02:47,579 - DEBUG - Taking top 8 variants by coverage in window 9:117375764-117375774
2012-10-07 19:02:49,603 - DEBUG - Taking top 8 variants by coverage in window 9:117393365-117393381
2012-10-07 19:02:49,798 - DEBUG - Taking top 8 variants by coverage in window 9:117393876-117393879
2012-10-07 19:02:49,853 - DEBUG - Taking top 8 variants by coverage in window 9:117393889-117393890
2012-10-07 19:02:49,887 - DEBUG - Taking top 8 variants by coverage in window 9:117394095-117394096
2012-10-07 19:02:50,453 - DEBUG - Taking top 8 variants by coverage in window 9:117397407-117397408
2012-10-07 19:02:50,814 - DEBUG - Taking top 8 variants by coverage in window 9:117399880-117399881
2012-10-07 19:02:51,174 - DEBUG - Taking top 8 variants by coverage in window 9:117402569-117402571
2012-10-07 19:02:51,789 - DEBUG - Taking top 8 variants by coverage in window 9:117404767-117404768
2012-10-07 19:02:51,806 - DEBUG - Taking top 8 variants by coverage in window 9:117404768-117404769
2012-10-07 19:02:51,995 - DEBUG - Taking top 8 variants by coverage in window 9:117406454-117406455
2012-10-07 19:02:52,229 - DEBUG - Taking top 8 variants by coverage in window 9:117406684-117406685
2012-10-07 19:02:52,313 - DEBUG - Taking top 8 variants by coverage in window 9:117407579-117407591
2012-10-07 19:02:52,627 - DEBUG - Taking top 8 variants by coverage in window 9:117408752-117408753
2012-10-07 19:02:53,499 - DEBUG - Taking top 8 variants by coverage in window 9:117408885-117408887
2012-10-07 19:02:54,344 - DEBUG - Taking top 8 variants by coverage in window 9:117409006-117409010
2012-10-07 19:02:54,624 - DEBUG - Taking top 8 variants by coverage in window 9:117409162-117409163
2012-10-07 19:02:54,908 - DEBUG - Taking top 8 variants by coverage in window 9:117411141-117411142
2012-10-07 19:02:54,973 - DEBUG - Taking top 8 variants by coverage in window 9:117411517-117411519
2012-10-07 19:02:55,743 - DEBUG - Taking top 8 variants by coverage in window 9:117420979-117420980
2012-10-07 19:02:56,607 - DEBUG - Taking top 8 variants by coverage in window 9:117426620-117426622
2012-10-07 19:02:56,617 - DEBUG - Taking top 8 variants by coverage in window 9:117426624-117426626
2012-10-07 19:02:56,986 - DEBUG - Taking top 8 variants by coverage in window 9:117428266-117428267
2012-10-07 19:02:57,054 - DEBUG - Taking top 8 variants by coverage in window 9:117428292-117428294
2012-10-07 19:02:57,581 - DEBUG - Taking top 8 variants by coverage in window 9:117430274-117430277
2012-10-07 19:02:57,783 - DEBUG - Taking top 8 variants by coverage in window 9:117430297-117430301
2012-10-07 19:02:58,130 - DEBUG - Taking top 8 variants by coverage in window 9:117431064-117431065
2012-10-07 19:02:58,461 - DEBUG - Taking top 8 variants by coverage in window 9:117433987-117433988
2012-10-07 19:02:58,851 - DEBUG - Taking top 8 variants by coverage in window 9:117434572-117434573
2012-10-07 19:02:59,976 - DEBUG - Taking top 8 variants by coverage in window 9:117444905-117444906
2012-10-07 19:03:00,110 - DEBUG - Taking top 8 variants by coverage in window 9:117445804-117445805
2012-10-07 19:03:00,628 - DEBUG - Taking top 8 variants by coverage in window 9:117451096-117451097
2012-10-07 19:03:00,847 - DEBUG - Taking top 8 variants by coverage in window 9:117452619-117452620
2012-10-07 19:03:01,808 - DEBUG - Taking top 8 variants by coverage in window 9:117462422-117462423
2012-10-07 19:03:01,961 - DEBUG - Taking top 8 variants by coverage in window 9:117464637-117464638
2012-10-07 19:03:03,123 - DEBUG - Taking top 8 variants by coverage in window 9:117480923-117480924
2012-10-07 19:03:04,207 - DEBUG - Taking top 8 variants by coverage in window 9:117497686-117497687
2012-10-07 19:03:04,778 - DEBUG - Taking top 8 variants by coverage in window 9:117501958-117501961
2012-10-07 19:03:04,835 - DEBUG - Taking top 8 variants by coverage in window 9:117501971-117501972
2012-10-07 19:03:04,913 - DEBUG - Taking top 8 variants by coverage in window 9:117502106-117502112
2012-10-07 19:03:05,010 - DEBUG - Taking top 8 variants by coverage in window 9:117503065-117503066
2012-10-07 19:03:05,080 - DEBUG - Taking top 8 variants by coverage in window 9:117503111-117503112
2012-10-07 19:03:05,803 - DEBUG - Taking top 8 variants by coverage in window 9:117512123-117512126
2012-10-07 19:03:05,999 - DEBUG - Taking top 8 variants by coverage in window 9:117513988-117513989
2012-10-07 19:03:06,125 - DEBUG - Taking top 8 variants by coverage in window 9:117514084-117514085
2012-10-07 19:03:06,517 - DEBUG - Taking top 8 variants by coverage in window 9:117517122-117517123
2012-10-07 19:03:08,921 - DEBUG - Taking top 8 variants by coverage in window 9:117534794-117534795
2012-10-07 19:03:09,164 - DEBUG - Taking top 8 variants by coverage in window 9:117537135-117537138
2012-10-07 19:03:09,173 - DEBUG - Taking top 8 variants by coverage in window 9:117537141-117537145
2012-10-07 19:03:09,360 - DEBUG - Taking top 8 variants by coverage in window 9:117537788-117537797
2012-10-07 19:03:09,461 - DEBUG - Taking top 8 variants by coverage in window 9:117537812-117537814
2012-10-07 19:03:09,577 - DEBUG - Taking top 8 variants by coverage in window 9:117537845-117537849
2012-10-07 19:03:09,678 - DEBUG - Taking top 8 variants by coverage in window 9:117537862-117537867
2012-10-07 19:03:09,802 - DEBUG - Taking top 8 variants by coverage in window 9:117537872-117537876
2012-10-07 19:03:10,148 - DEBUG - Taking top 8 variants by coverage in window 9:117537911-117537920
2012-10-07 19:03:10,832 - DEBUG - Taking top 8 variants by coverage in window 9:117538802-117538803
2012-10-07 19:03:11,002 - DEBUG - Taking top 8 variants by coverage in window 9:117540103-117540104
2012-10-07 19:03:11,444 - DEBUG - Taking top 8 variants by coverage in window 9:117544079-117544080
2012-10-07 19:03:11,525 - DEBUG - Taking top 8 variants by coverage in window 9:117544418-117544420
2012-10-07 19:03:11,550 - DEBUG - Taking top 8 variants by coverage in window 9:117544510-117544522
2012-10-07 19:03:11,592 - DEBUG - Taking top 8 variants by coverage in window 9:117544908-117544909
2012-10-07 19:03:11,779 - DEBUG - Taking top 8 variants by coverage in window 9:117546594-117546598
2012-10-07 19:03:12,744 - DEBUG - Taking top 8 variants by coverage in window 9:117555002-117555003
2012-10-07 19:03:12,840 - DEBUG - Taking top 8 variants by coverage in window 9:117555822-117555823
2012-10-07 19:03:13,888 - DEBUG - Taking top 8 variants by coverage in window 9:117565967-117565968
2012-10-07 19:03:14,708 - DEBUG - Taking top 8 variants by coverage in window 9:117576592-117576594
2012-10-07 19:03:14,878 - DEBUG - Taking top 8 variants by coverage in window 9:117577159-117577160
2012-10-07 19:03:14,947 - DEBUG - Taking top 8 variants by coverage in window 9:117577830-117577831
2012-10-07 19:03:14,957 - DEBUG - Taking top 8 variants by coverage in window 9:117577847-117577848
2012-10-07 19:03:15,050 - DEBUG - Taking top 8 variants by coverage in window 9:117578544-117578545
2012-10-07 19:03:15,664 - DEBUG - Taking top 8 variants by coverage in window 9:117582236-117582237
2012-10-07 19:03:16,764 - DEBUG - Taking top 8 variants by coverage in window 9:117593549-117593550
2012-10-07 19:03:16,980 - DEBUG - Taking top 8 variants by coverage in window 9:117595733-117595734
2012-10-07 19:03:18,273 - DEBUG - Taking top 8 variants by coverage in window 9:117611629-117611630
2012-10-07 19:03:18,447 - DEBUG - Taking top 8 variants by coverage in window 9:117613080-117613086
2012-10-07 19:03:19,407 - DEBUG - Taking top 8 variants by coverage in window 9:117621257-117621258
2012-10-07 19:03:19,620 - DEBUG - Taking top 8 variants by coverage in window 9:117623022-117623023
2012-10-07 19:03:19,763 - DEBUG - Taking top 8 variants by coverage in window 9:117623190-117623191
2012-10-07 19:03:21,419 - DEBUG - Taking top 8 variants by coverage in window 9:117640960-117640961
2012-10-07 19:03:21,439 - DEBUG - Taking top 8 variants by coverage in window 9:117640986-117640987
2012-10-07 19:03:21,925 - DEBUG - Taking top 8 variants by coverage in window 9:117646570-117646575
2012-10-07 19:03:22,666 - DEBUG - Taking top 8 variants by coverage in window 9:117650060-117650061
2012-10-07 19:03:22,679 - DEBUG - Taking top 8 variants by coverage in window 9:117650084-117650085
2012-10-07 19:03:22,751 - DEBUG - Taking top 8 variants by coverage in window 9:117650337-117650342
2012-10-07 19:03:22,989 - DEBUG - Taking top 8 variants by coverage in window 9:117651452-117651461
2012-10-07 19:03:23,046 - DEBUG - Taking top 8 variants by coverage in window 9:117651490-117651491
2012-10-07 19:03:23,669 - DEBUG - Taking top 8 variants by coverage in window 9:117655589-117655590
2012-10-07 19:03:23,930 - DEBUG - Taking top 8 variants by coverage in window 9:117657364-117657365
2012-10-07 19:03:24,598 - DEBUG - Taking top 8 variants by coverage in window 9:117662948-117662956
2012-10-07 19:03:24,707 - DEBUG - Taking top 8 variants by coverage in window 9:117662984-117662985
2012-10-07 19:03:24,806 - DEBUG - Taking top 8 variants by coverage in window 9:117663618-117663619
2012-10-07 19:03:25,015 - DEBUG - Taking top 8 variants by coverage in window 9:117665426-117665428
2012-10-07 19:03:25,268 - DEBUG - Taking top 8 variants by coverage in window 9:117666690-117666692
2012-10-07 19:03:25,999 - DEBUG - Taking top 8 variants by coverage in window 9:117672007-117672008
2012-10-07 19:03:27,792 - DEBUG - Taking top 8 variants by coverage in window 9:117685692-117685693
2012-10-07 19:03:29,025 - DEBUG - Taking top 8 variants by coverage in window 9:117694471-117694472
2012-10-07 19:03:29,069 - DEBUG - Taking top 8 variants by coverage in window 9:117694521-117694522
2012-10-07 19:03:29,368 - DEBUG - Taking top 8 variants by coverage in window 9:117695485-117695486
2012-10-07 19:03:29,760 - DEBUG - Taking top 8 variants by coverage in window 9:117698188-117698196
2012-10-07 19:03:30,651 - DEBUG - Taking top 8 variants by coverage in window 9:117702479-117702480
2012-10-07 19:03:30,790 - DEBUG - Taking top 8 variants by coverage in window 9:117703242-117703243
2012-10-07 19:03:30,822 - DEBUG - Taking top 8 variants by coverage in window 9:117703265-117703266
2012-10-07 19:03:31,202 - DEBUG - Taking top 8 variants by coverage in window 9:117704639-117704641
2012-10-07 19:03:32,627 - DEBUG - Taking top 8 variants by coverage in window 9:117714825-117714826
2012-10-07 19:03:33,561 - DEBUG - Taking top 8 variants by coverage in window 9:117720517-117720518
2012-10-07 19:03:34,432 - DEBUG - Taking top 8 variants by coverage in window 9:117726550-117726553
2012-10-07 19:03:34,515 - DEBUG - Taking top 8 variants by coverage in window 9:117726771-117726775
2012-10-07 19:03:34,895 - DEBUG - Taking top 8 variants by coverage in window 9:117730106-117730109
2012-10-07 19:03:36,211 - DEBUG - Taking top 8 variants by coverage in window 9:117737906-117737907
2012-10-07 19:03:36,510 - DEBUG - Taking top 8 variants by coverage in window 9:117739119-117739120
2012-10-07 19:03:37,143 - DEBUG - Taking top 8 variants by coverage in window 9:117748153-117748154
2012-10-07 19:03:37,177 - DEBUG - Taking top 8 variants by coverage in window 9:117748195-117748196
2012-10-07 19:03:37,393 - DEBUG - Taking top 8 variants by coverage in window 9:117752395-117752396
2012-10-07 19:03:37,480 - DEBUG - Taking top 8 variants by coverage in window 9:117754607-117754608
2012-10-07 19:03:37,656 - DEBUG - Taking top 8 variants by coverage in window 9:117755774-117755775
2012-10-07 19:03:37,867 - DEBUG - Taking top 8 variants by coverage in window 9:117756572-117756574
2012-10-07 19:03:37,952 - DEBUG - Taking top 8 variants by coverage in window 9:117756575-117756576
2012-10-07 19:03:38,064 - DEBUG - Taking top 8 variants by coverage in window 9:117756577-117756578
2012-10-07 19:03:38,099 - DEBUG - Taking top 8 variants by coverage in window 9:117756580-117756582
2012-10-07 19:03:38,530 - DEBUG - Taking top 8 variants by coverage in window 9:117758143-117758153
2012-10-07 19:03:39,161 - DEBUG - Taking top 8 variants by coverage in window 9:117759195-117759196
2012-10-07 19:03:39,677 - DEBUG - Taking top 8 variants by coverage in window 9:117762831-117762836
2012-10-07 19:03:39,699 - DEBUG - Taking top 8 variants by coverage in window 9:117762841-117762842
2012-10-07 19:03:39,715 - DEBUG - Taking top 8 variants by coverage in window 9:117762849-117762850
2012-10-07 19:03:40,149 - DEBUG - Taking top 8 variants by coverage in window 9:117765721-117765722
2012-10-07 19:03:40,471 - DEBUG - Taking top 8 variants by coverage in window 9:117767179-117767187
2012-10-07 19:03:40,748 - DEBUG - Taking top 8 variants by coverage in window 9:117767381-117767389
2012-10-07 19:03:41,131 - DEBUG - Taking top 8 variants by coverage in window 9:117770035-117770047
2012-10-07 19:03:41,919 - DEBUG - Taking top 8 variants by coverage in window 9:117771563-117771566
2012-10-07 19:03:42,247 - DEBUG - Taking top 8 variants by coverage in window 9:117773516-117773517
2012-10-07 19:03:42,316 - DEBUG - Taking top 8 variants by coverage in window 9:117774150-117774151
2012-10-07 19:03:42,419 - DEBUG - Taking top 8 variants by coverage in window 9:117774702-117774703
2012-10-07 19:03:42,472 - DEBUG - Taking top 8 variants by coverage in window 9:117774860-117774861
2012-10-07 19:03:42,824 - DEBUG - Taking top 8 variants by coverage in window 9:117775211-117775223
2012-10-07 19:03:42,995 - DEBUG - Taking top 8 variants by coverage in window 9:117775250-117775253
2012-10-07 19:03:43,161 - DEBUG - Taking top 8 variants by coverage in window 9:117775254-117775262
2012-10-07 19:03:43,821 - DEBUG - Taking top 8 variants by coverage in window 9:117775348-117775352
2012-10-07 19:03:45,325 - DEBUG - Taking top 8 variants by coverage in window 9:117786453-117786454
2012-10-07 19:03:45,985 - DEBUG - Taking top 8 variants by coverage in window 9:117793315-117793316
2012-10-07 19:03:46,070 - DEBUG - Taking top 8 variants by coverage in window 9:117793559-117793560
2012-10-07 19:03:48,290 - DEBUG - Taking top 8 variants by coverage in window 9:117813814-117813827
2012-10-07 19:03:48,314 - DEBUG - Taking top 8 variants by coverage in window 9:117813831-117813833
2012-10-07 19:03:48,726 - DEBUG - Taking top 8 variants by coverage in window 9:117816617-117816618
2012-10-07 19:03:50,033 - DEBUG - Taking top 8 variants by coverage in window 9:117826623-117826624
2012-10-07 19:03:50,528 - DEBUG - Taking top 8 variants by coverage in window 9:117831902-117831903
2012-10-07 19:03:51,563 - DEBUG - Taking top 8 variants by coverage in window 9:117837530-117837531
2012-10-07 19:03:51,740 - DEBUG - Taking top 8 variants by coverage in window 9:117839673-117839674
2012-10-07 19:03:51,945 - DEBUG - Taking top 8 variants by coverage in window 9:117842513-117842514
2012-10-07 19:03:53,323 - DEBUG - Taking top 8 variants by coverage in window 9:117853913-117853914
2012-10-07 19:03:54,638 - DEBUG - Taking top 8 variants by coverage in window 9:117875853-117875854
2012-10-07 19:03:55,178 - DEBUG - Taking top 8 variants by coverage in window 9:117881976-117881977
2012-10-07 19:03:55,213 - DEBUG - Taking top 8 variants by coverage in window 9:117881990-117881991
2012-10-07 19:03:55,240 - DEBUG - Taking top 8 variants by coverage in window 9:117881993-117881994
2012-10-07 19:03:55,302 - DEBUG - Taking top 8 variants by coverage in window 9:117882184-117882185
2012-10-07 19:03:56,921 - DEBUG - Taking top 8 variants by coverage in window 9:117908717-117908718
2012-10-07 19:03:57,843 - DEBUG - Taking top 8 variants by coverage in window 9:117923798-117923799
2012-10-07 19:03:59,204 - DEBUG - Taking top 8 variants by coverage in window 9:117947722-117947725
2012-10-07 19:03:59,268 - DEBUG - Taking top 8 variants by coverage in window 9:117948239-117948242
2012-10-07 19:04:00,274 - DEBUG - Taking top 8 variants by coverage in window 9:117970032-117970035
2012-10-07 19:04:01,325 - DEBUG - Taking top 8 variants by coverage in window 9:117984882-117984885
2012-10-07 19:04:01,428 - DEBUG - Taking top 8 variants by coverage in window 9:117986685-117986686
2012-10-07 19:04:01,598 - DEBUG - Taking top 8 variants by coverage in window 9:117988008-117988009
2012-10-07 19:04:01,611 - DEBUG - Taking top 8 variants by coverage in window 9:117988009-117988010
2012-10-07 19:04:01,686 - DEBUG - Taking top 8 variants by coverage in window 9:117988345-117988359
2012-10-07 19:04:01,707 - DEBUG - Taking top 8 variants by coverage in window 9:117988388-117988389
2012-10-07 19:04:03,148 - DEBUG - Read 105461 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 19:04:03,423 - DEBUG - Read 117041 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 19:04:03,707 - DEBUG - Read 130942 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 19:04:04,033 - DEBUG - Read 134901 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 19:04:04,333 - DEBUG - Read 123591 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 19:04:04,609 - DEBUG - Read 121175 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 19:04:04,892 - DEBUG - Read 126424 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 19:04:05,191 - DEBUG - Read 117386 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 19:04:05,466 - DEBUG - Read 111587 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 19:04:05,729 - DEBUG - Read 108864 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 19:04:06,020 - DEBUG - Read 122671 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 19:04:06,280 - DEBUG - Read 115217 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 19:04:06,553 - DEBUG - Read 114832 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 19:04:06,823 - DEBUG - Read 125171 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 19:04:07,125 - DEBUG - Read 135406 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 19:04:07,379 - DEBUG - Read 105217 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 19:04:07,659 - DEBUG - Read 129818 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 19:04:07,940 - DEBUG - Read 120906 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 19:04:08,203 - DEBUG - Read 111287 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 19:04:08,461 - DEBUG - Read 104577 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 19:04:08,585 - DEBUG - Detected 30936 variants in 105461 reads
2012-10-07 19:04:08,802 - DEBUG - Detected 45102 variants in 117041 reads
2012-10-07 19:04:09,092 - DEBUG - Detected 56423 variants in 130942 reads
2012-10-07 19:04:09,452 - DEBUG - Detected 64942 variants in 134901 reads
2012-10-07 19:04:09,814 - DEBUG - Detected 72212 variants in 123591 reads
2012-10-07 19:04:10,211 - DEBUG - Detected 81118 variants in 121175 reads
2012-10-07 19:04:10,661 - DEBUG - Detected 95924 variants in 126424 reads
2012-10-07 19:04:11,164 - DEBUG - Detected 103198 variants in 117386 reads
2012-10-07 19:04:11,737 - DEBUG - Detected 109662 variants in 111587 reads
2012-10-07 19:04:12,295 - DEBUG - Detected 115437 variants in 108864 reads
2012-10-07 19:04:12,895 - DEBUG - Detected 121883 variants in 122671 reads
2012-10-07 19:04:13,513 - DEBUG - Detected 126848 variants in 115217 reads
2012-10-07 19:04:14,202 - DEBUG - Detected 132258 variants in 114832 reads
2012-10-07 19:04:14,877 - DEBUG - Detected 137738 variants in 125171 reads
2012-10-07 19:04:15,599 - DEBUG - Detected 146831 variants in 135406 reads
2012-10-07 19:04:16,331 - DEBUG - Detected 151756 variants in 105217 reads
2012-10-07 19:04:17,162 - DEBUG - Detected 156373 variants in 129818 reads
2012-10-07 19:04:17,946 - DEBUG - Detected 161101 variants in 120906 reads
2012-10-07 19:04:18,750 - DEBUG - Detected 166216 variants in 111287 reads
2012-10-07 19:04:19,554 - DEBUG - Detected 171210 variants in 104577 reads
2012-10-07 19:04:21,347 - DEBUG - Taking top 8 variants by coverage in window 9:118009303-118009305
2012-10-07 19:04:21,401 - DEBUG - Taking top 8 variants by coverage in window 9:118009571-118009572
2012-10-07 19:04:21,473 - DEBUG - Taking top 8 variants by coverage in window 9:118009718-118009719
2012-10-07 19:04:21,511 - DEBUG - Taking top 8 variants by coverage in window 9:118009739-118009741
2012-10-07 19:04:21,586 - DEBUG - Taking top 8 variants by coverage in window 9:118010405-118010413
2012-10-07 19:04:21,654 - DEBUG - Taking top 8 variants by coverage in window 9:118010969-118010970
2012-10-07 19:04:22,363 - DEBUG - Taking top 8 variants by coverage in window 9:118017137-118017142
2012-10-07 19:04:22,595 - DEBUG - Taking top 8 variants by coverage in window 9:118018852-118018853
2012-10-07 19:04:22,606 - DEBUG - Taking top 8 variants by coverage in window 9:118018853-118018854
2012-10-07 19:04:24,493 - DEBUG - Taking top 8 variants by coverage in window 9:118037286-118037289
2012-10-07 19:04:24,587 - DEBUG - Taking top 8 variants by coverage in window 9:118043459-118043460
2012-10-07 19:04:24,798 - DEBUG - Taking top 8 variants by coverage in window 9:118045715-118045718
2012-10-07 19:04:25,187 - DEBUG - Taking top 8 variants by coverage in window 9:118049333-118049334
2012-10-07 19:04:25,193 - DEBUG - Taking top 8 variants by coverage in window 9:118049335-118049351
2012-10-07 19:04:25,390 - DEBUG - Taking top 8 variants by coverage in window 9:118050101-118050102
2012-10-07 19:04:25,404 - DEBUG - Taking top 8 variants by coverage in window 9:118050103-118050104
2012-10-07 19:04:25,747 - DEBUG - Taking top 8 variants by coverage in window 9:118053929-118053930
2012-10-07 19:04:25,893 - DEBUG - Taking top 8 variants by coverage in window 9:118054461-118054462
2012-10-07 19:04:25,956 - DEBUG - Taking top 8 variants by coverage in window 9:118054921-118054922
2012-10-07 19:04:26,026 - DEBUG - Taking top 8 variants by coverage in window 9:118055486-118055490
2012-10-07 19:04:26,168 - DEBUG - Taking top 8 variants by coverage in window 9:118055755-118055763
2012-10-07 19:04:26,217 - DEBUG - Taking top 8 variants by coverage in window 9:118055806-118055815
2012-10-07 19:04:26,670 - DEBUG - Taking top 8 variants by coverage in window 9:118055880-118055883
2012-10-07 19:04:26,735 - DEBUG - Taking top 8 variants by coverage in window 9:118055993-118056001
2012-10-07 19:04:26,928 - DEBUG - Taking top 8 variants by coverage in window 9:118056056-118056059
2012-10-07 19:04:27,651 - DEBUG - Taking top 8 variants by coverage in window 9:118061842-118061844
2012-10-07 19:04:28,004 - DEBUG - Taking top 8 variants by coverage in window 9:118065560-118065561
2012-10-07 19:04:28,603 - DEBUG - Taking top 8 variants by coverage in window 9:118075703-118075704
2012-10-07 19:04:28,630 - DEBUG - Taking top 8 variants by coverage in window 9:118075717-118075720
2012-10-07 19:04:28,770 - DEBUG - Taking top 8 variants by coverage in window 9:118075865-118075866
2012-10-07 19:04:29,007 - DEBUG - Taking top 8 variants by coverage in window 9:118077644-118077645
2012-10-07 19:04:29,489 - DEBUG - Taking top 8 variants by coverage in window 9:118085839-118085840
2012-10-07 19:04:29,720 - DEBUG - Taking top 8 variants by coverage in window 9:118086864-118086868
2012-10-07 19:04:30,836 - DEBUG - Taking top 8 variants by coverage in window 9:118095378-118095379
2012-10-07 19:04:30,960 - DEBUG - Taking top 8 variants by coverage in window 9:118097228-118097229
2012-10-07 19:04:31,235 - DEBUG - Taking top 8 variants by coverage in window 9:118099621-118099622
2012-10-07 19:04:32,295 - DEBUG - Taking top 8 variants by coverage in window 9:118110202-118110203
2012-10-07 19:04:33,029 - DEBUG - Taking top 8 variants by coverage in window 9:118114710-118114712
2012-10-07 19:04:33,189 - DEBUG - Taking top 8 variants by coverage in window 9:118114718-118114719
2012-10-07 19:04:33,678 - DEBUG - Taking top 8 variants by coverage in window 9:118116938-118116939
2012-10-07 19:04:33,724 - DEBUG - Taking top 8 variants by coverage in window 9:118117381-118117382
2012-10-07 19:04:33,745 - DEBUG - Taking top 8 variants by coverage in window 9:118117564-118117566
2012-10-07 19:04:33,897 - DEBUG - Taking top 8 variants by coverage in window 9:118120764-118120765
2012-10-07 19:04:33,990 - DEBUG - Taking top 8 variants by coverage in window 9:118120791-118120792
2012-10-07 19:04:34,535 - DEBUG - Taking top 8 variants by coverage in window 9:118128052-118128053
2012-10-07 19:04:35,384 - DEBUG - Taking top 8 variants by coverage in window 9:118136001-118136002
2012-10-07 19:04:35,652 - DEBUG - Taking top 8 variants by coverage in window 9:118140443-118140444
2012-10-07 19:04:36,335 - DEBUG - Taking top 8 variants by coverage in window 9:118147291-118147292
2012-10-07 19:04:37,258 - DEBUG - Taking top 8 variants by coverage in window 9:118160247-118160250
2012-10-07 19:04:38,061 - DEBUG - Taking top 8 variants by coverage in window 9:118171070-118171071
2012-10-07 19:04:39,516 - DEBUG - Taking top 8 variants by coverage in window 9:118189090-118189092
2012-10-07 19:04:39,661 - DEBUG - Taking top 8 variants by coverage in window 9:118189155-118189157
2012-10-07 19:04:40,570 - DEBUG - Taking top 8 variants by coverage in window 9:118194200-118194201
2012-10-07 19:04:40,624 - DEBUG - Taking top 8 variants by coverage in window 9:118195313-118195322
2012-10-07 19:04:40,707 - DEBUG - Taking top 8 variants by coverage in window 9:118196792-118196793
2012-10-07 19:04:40,896 - DEBUG - Taking top 8 variants by coverage in window 9:118200989-118200990
2012-10-07 19:04:40,915 - DEBUG - Taking top 8 variants by coverage in window 9:118201026-118201027
2012-10-07 19:04:41,228 - DEBUG - Taking top 8 variants by coverage in window 9:118204621-118204623
2012-10-07 19:04:41,272 - DEBUG - Taking top 8 variants by coverage in window 9:118204662-118204663
2012-10-07 19:04:41,287 - DEBUG - Taking top 8 variants by coverage in window 9:118204679-118204680
2012-10-07 19:04:41,356 - DEBUG - Taking top 8 variants by coverage in window 9:118205503-118205510
2012-10-07 19:04:41,697 - DEBUG - Taking top 8 variants by coverage in window 9:118208051-118208056
2012-10-07 19:04:41,884 - DEBUG - Taking top 8 variants by coverage in window 9:118208197-118208205
2012-10-07 19:04:42,146 - DEBUG - Taking top 8 variants by coverage in window 9:118210032-118210033
2012-10-07 19:04:42,161 - DEBUG - Taking top 8 variants by coverage in window 9:118210034-118210035
2012-10-07 19:04:42,478 - DEBUG - Taking top 8 variants by coverage in window 9:118213288-118213289
2012-10-07 19:04:42,492 - DEBUG - Taking top 8 variants by coverage in window 9:118213292-118213293
2012-10-07 19:04:42,560 - DEBUG - Taking top 8 variants by coverage in window 9:118213353-118213354
2012-10-07 19:04:42,790 - DEBUG - Taking top 8 variants by coverage in window 9:118214052-118214053
2012-10-07 19:04:43,435 - DEBUG - Taking top 8 variants by coverage in window 9:118220521-118220522
2012-10-07 19:04:43,718 - DEBUG - Taking top 8 variants by coverage in window 9:118221213-118221214
2012-10-07 19:04:44,394 - DEBUG - Taking top 8 variants by coverage in window 9:118224173-118224175
2012-10-07 19:04:44,566 - DEBUG - Taking top 8 variants by coverage in window 9:118224859-118224862
2012-10-07 19:04:45,361 - DEBUG - Taking top 8 variants by coverage in window 9:118231950-118231952
2012-10-07 19:04:45,389 - DEBUG - Taking top 8 variants by coverage in window 9:118231958-118231964
2012-10-07 19:04:45,534 - DEBUG - Taking top 8 variants by coverage in window 9:118232040-118232041
2012-10-07 19:04:45,612 - DEBUG - Taking top 8 variants by coverage in window 9:118232616-118232617
2012-10-07 19:04:45,725 - DEBUG - Taking top 8 variants by coverage in window 9:118232721-118232722
2012-10-07 19:04:45,938 - DEBUG - Taking top 8 variants by coverage in window 9:118234251-118234252
2012-10-07 19:04:45,955 - DEBUG - Taking top 8 variants by coverage in window 9:118234261-118234265
2012-10-07 19:04:45,985 - DEBUG - Taking top 8 variants by coverage in window 9:118234319-118234320
2012-10-07 19:04:46,595 - DEBUG - Taking top 8 variants by coverage in window 9:118241171-118241181
2012-10-07 19:04:47,755 - DEBUG - Taking top 8 variants by coverage in window 9:118241209-118241217
2012-10-07 19:04:47,933 - DEBUG - Taking top 8 variants by coverage in window 9:118241241-118241249
2012-10-07 19:04:49,755 - DEBUG - Taking top 8 variants by coverage in window 9:118252039-118252040
2012-10-07 19:04:50,530 - DEBUG - Taking top 8 variants by coverage in window 9:118253003-118253004
2012-10-07 19:04:50,652 - DEBUG - Taking top 8 variants by coverage in window 9:118254295-118254296
2012-10-07 19:04:50,998 - DEBUG - Taking top 8 variants by coverage in window 9:118257504-118257505
2012-10-07 19:04:51,408 - DEBUG - Taking top 8 variants by coverage in window 9:118260301-118260303
2012-10-07 19:04:52,095 - DEBUG - Taking top 8 variants by coverage in window 9:118264053-118264054
2012-10-07 19:04:52,240 - DEBUG - Taking top 8 variants by coverage in window 9:118264362-118264369
2012-10-07 19:04:52,277 - DEBUG - Taking top 8 variants by coverage in window 9:118264417-118264418
2012-10-07 19:04:52,510 - DEBUG - Taking top 8 variants by coverage in window 9:118266629-118266630
2012-10-07 19:04:53,331 - DEBUG - Taking top 8 variants by coverage in window 9:118272295-118272297
2012-10-07 19:04:53,679 - DEBUG - Taking top 8 variants by coverage in window 9:118273450-118273451
2012-10-07 19:04:53,701 - DEBUG - Taking top 8 variants by coverage in window 9:118273454-118273455
2012-10-07 19:04:54,049 - DEBUG - Taking top 8 variants by coverage in window 9:118277138-118277140
2012-10-07 19:04:54,799 - DEBUG - Taking top 8 variants by coverage in window 9:118284585-118284590
2012-10-07 19:04:54,926 - DEBUG - Taking top 8 variants by coverage in window 9:118284934-118284935
2012-10-07 19:04:54,941 - DEBUG - Taking top 8 variants by coverage in window 9:118284940-118284941
2012-10-07 19:04:55,689 - DEBUG - Taking top 8 variants by coverage in window 9:118286792-118286793
2012-10-07 19:04:56,498 - DEBUG - Taking top 8 variants by coverage in window 9:118291955-118291960
2012-10-07 19:04:56,639 - DEBUG - Taking top 8 variants by coverage in window 9:118293493-118293494
2012-10-07 19:04:57,153 - DEBUG - Taking top 8 variants by coverage in window 9:118297547-118297548
2012-10-07 19:04:57,684 - DEBUG - Taking top 8 variants by coverage in window 9:118303314-118303315
2012-10-07 19:04:57,761 - DEBUG - Taking top 8 variants by coverage in window 9:118303329-118303330
2012-10-07 19:04:58,212 - DEBUG - Taking top 8 variants by coverage in window 9:118307700-118307701
2012-10-07 19:04:58,373 - DEBUG - Taking top 8 variants by coverage in window 9:118309054-118309065
2012-10-07 19:04:58,380 - DEBUG - Taking top 8 variants by coverage in window 9:118309067-118309069
2012-10-07 19:04:58,543 - DEBUG - Taking top 8 variants by coverage in window 9:118310343-118310345
2012-10-07 19:04:58,721 - DEBUG - Taking top 8 variants by coverage in window 9:118310514-118310517
2012-10-07 19:04:59,347 - DEBUG - Taking top 8 variants by coverage in window 9:118313466-118313467
2012-10-07 19:04:59,671 - DEBUG - Taking top 8 variants by coverage in window 9:118316971-118316995
2012-10-07 19:05:00,063 - DEBUG - Taking top 8 variants by coverage in window 9:118319255-118319258
2012-10-07 19:05:00,091 - DEBUG - Taking top 8 variants by coverage in window 9:118319259-118319261
2012-10-07 19:05:00,109 - DEBUG - Taking top 8 variants by coverage in window 9:118319266-118319269
2012-10-07 19:05:00,719 - DEBUG - Taking top 8 variants by coverage in window 9:118323776-118323777
2012-10-07 19:05:01,237 - DEBUG - Taking top 8 variants by coverage in window 9:118329354-118329355
2012-10-07 19:05:01,342 - DEBUG - Taking top 8 variants by coverage in window 9:118329435-118329436
2012-10-07 19:05:01,541 - DEBUG - Taking top 8 variants by coverage in window 9:118331992-118331993
2012-10-07 19:05:02,507 - DEBUG - Taking top 8 variants by coverage in window 9:118337792-118337795
2012-10-07 19:05:02,550 - DEBUG - Taking top 8 variants by coverage in window 9:118337802-118337803
2012-10-07 19:05:03,005 - DEBUG - Taking top 8 variants by coverage in window 9:118342867-118342868
2012-10-07 19:05:03,179 - DEBUG - Taking top 8 variants by coverage in window 9:118344453-118344457
2012-10-07 19:05:03,507 - DEBUG - Taking top 8 variants by coverage in window 9:118346731-118346732
2012-10-07 19:05:03,869 - DEBUG - Taking top 8 variants by coverage in window 9:118351389-118351395
2012-10-07 19:05:04,093 - DEBUG - Taking top 8 variants by coverage in window 9:118351649-118351652
2012-10-07 19:05:04,844 - DEBUG - Taking top 8 variants by coverage in window 9:118357135-118357136
2012-10-07 19:05:05,340 - DEBUG - Taking top 8 variants by coverage in window 9:118359233-118359234
2012-10-07 19:05:06,041 - DEBUG - Taking top 8 variants by coverage in window 9:118365405-118365406
2012-10-07 19:05:06,060 - DEBUG - Taking top 8 variants by coverage in window 9:118365406-118365407
2012-10-07 19:05:06,207 - DEBUG - Taking top 8 variants by coverage in window 9:118366360-118366361
2012-10-07 19:05:06,225 - DEBUG - Taking top 8 variants by coverage in window 9:118366361-118366364
2012-10-07 19:05:06,463 - DEBUG - Taking top 8 variants by coverage in window 9:118366863-118366866
2012-10-07 19:05:06,904 - DEBUG - Taking top 8 variants by coverage in window 9:118373145-118373151
2012-10-07 19:05:07,055 - DEBUG - Taking top 8 variants by coverage in window 9:118374160-118374161
2012-10-07 19:05:07,086 - DEBUG - Taking top 8 variants by coverage in window 9:118374192-118374194
2012-10-07 19:05:07,344 - DEBUG - Taking top 8 variants by coverage in window 9:118377195-118377196
2012-10-07 19:05:08,923 - DEBUG - Taking top 8 variants by coverage in window 9:118402153-118402154
2012-10-07 19:05:09,162 - DEBUG - Taking top 8 variants by coverage in window 9:118405577-118405578
2012-10-07 19:05:09,595 - DEBUG - Taking top 8 variants by coverage in window 9:118409498-118409499
2012-10-07 19:05:09,864 - DEBUG - Taking top 8 variants by coverage in window 9:118410836-118410837
2012-10-07 19:05:10,056 - DEBUG - Taking top 8 variants by coverage in window 9:118412282-118412283
2012-10-07 19:05:10,474 - DEBUG - Taking top 8 variants by coverage in window 9:118415003-118415004
2012-10-07 19:05:10,667 - DEBUG - Taking top 8 variants by coverage in window 9:118419329-118419330
2012-10-07 19:05:12,210 - DEBUG - Taking top 8 variants by coverage in window 9:118449079-118449081
2012-10-07 19:05:13,369 - DEBUG - Taking top 8 variants by coverage in window 9:118468922-118468923
2012-10-07 19:05:13,393 - DEBUG - Taking top 8 variants by coverage in window 9:118468933-118468934
2012-10-07 19:05:13,490 - DEBUG - Taking top 8 variants by coverage in window 9:118469295-118469296
2012-10-07 19:05:13,621 - DEBUG - Taking top 8 variants by coverage in window 9:118471371-118471372
2012-10-07 19:05:14,093 - DEBUG - Taking top 8 variants by coverage in window 9:118478178-118478179
2012-10-07 19:05:14,272 - DEBUG - Taking top 8 variants by coverage in window 9:118479067-118479068
2012-10-07 19:05:14,343 - DEBUG - Taking top 8 variants by coverage in window 9:118479106-118479109
2012-10-07 19:05:14,549 - DEBUG - Taking top 8 variants by coverage in window 9:118479947-118479950
2012-10-07 19:05:14,916 - DEBUG - Taking top 8 variants by coverage in window 9:118487139-118487140
2012-10-07 19:05:14,978 - DEBUG - Taking top 8 variants by coverage in window 9:118487974-118487975
2012-10-07 19:05:15,833 - DEBUG - Taking top 8 variants by coverage in window 9:118497426-118497427
2012-10-07 19:05:16,159 - DEBUG - Taking top 8 variants by coverage in window 9:118500308-118500310
2012-10-07 19:05:17,039 - DEBUG - Taking top 8 variants by coverage in window 9:118507549-118507550
2012-10-07 19:05:17,257 - DEBUG - Taking top 8 variants by coverage in window 9:118509002-118509003
2012-10-07 19:05:17,290 - DEBUG - Taking top 8 variants by coverage in window 9:118509076-118509077
2012-10-07 19:05:17,444 - DEBUG - Taking top 8 variants by coverage in window 9:118510529-118510530
2012-10-07 19:05:17,855 - DEBUG - Taking top 8 variants by coverage in window 9:118514165-118514166
2012-10-07 19:05:18,258 - DEBUG - Taking top 8 variants by coverage in window 9:118520109-118520110
2012-10-07 19:05:18,499 - DEBUG - Taking top 8 variants by coverage in window 9:118523153-118523154
2012-10-07 19:05:18,622 - DEBUG - Taking top 8 variants by coverage in window 9:118524069-118524071
2012-10-07 19:05:18,993 - DEBUG - Taking top 8 variants by coverage in window 9:118527071-118527076
2012-10-07 19:05:19,383 - DEBUG - Taking top 8 variants by coverage in window 9:118529395-118529397
2012-10-07 19:05:20,321 - DEBUG - Taking top 8 variants by coverage in window 9:118535403-118535411
2012-10-07 19:05:20,529 - DEBUG - Taking top 8 variants by coverage in window 9:118536782-118536784
2012-10-07 19:05:20,576 - DEBUG - Taking top 8 variants by coverage in window 9:118536806-118536808
2012-10-07 19:05:20,607 - DEBUG - Taking top 8 variants by coverage in window 9:118536821-118536822
2012-10-07 19:05:20,648 - DEBUG - Taking top 8 variants by coverage in window 9:118536936-118536947
2012-10-07 19:05:20,864 - DEBUG - Taking top 8 variants by coverage in window 9:118538003-118538005
2012-10-07 19:05:21,454 - DEBUG - Taking top 8 variants by coverage in window 9:118540832-118540833
2012-10-07 19:05:22,330 - DEBUG - Taking top 8 variants by coverage in window 9:118549624-118549625
2012-10-07 19:05:22,501 - DEBUG - Taking top 8 variants by coverage in window 9:118550882-118550883
2012-10-07 19:05:23,395 - DEBUG - Taking top 8 variants by coverage in window 9:118556526-118556530
2012-10-07 19:05:23,423 - DEBUG - Taking top 8 variants by coverage in window 9:118556532-118556533
2012-10-07 19:05:23,905 - DEBUG - Taking top 8 variants by coverage in window 9:118562318-118562319
2012-10-07 19:05:23,916 - DEBUG - Taking top 8 variants by coverage in window 9:118562326-118562327
2012-10-07 19:05:24,134 - DEBUG - Taking top 8 variants by coverage in window 9:118563471-118563472
2012-10-07 19:05:25,450 - DEBUG - Taking top 8 variants by coverage in window 9:118577197-118577198
2012-10-07 19:05:25,827 - DEBUG - Taking top 8 variants by coverage in window 9:118580722-118580723
2012-10-07 19:05:26,025 - DEBUG - Taking top 8 variants by coverage in window 9:118582188-118582195
2012-10-07 19:05:26,796 - DEBUG - Taking top 8 variants by coverage in window 9:118587790-118587791
2012-10-07 19:05:26,854 - DEBUG - Taking top 8 variants by coverage in window 9:118588314-118588315
2012-10-07 19:05:26,981 - DEBUG - Taking top 8 variants by coverage in window 9:118589450-118589451
2012-10-07 19:05:27,838 - DEBUG - Taking top 8 variants by coverage in window 9:118599975-118599976
2012-10-07 19:05:27,854 - DEBUG - Taking top 8 variants by coverage in window 9:118599976-118599977
2012-10-07 19:05:28,025 - DEBUG - Taking top 8 variants by coverage in window 9:118601116-118601117
2012-10-07 19:05:29,738 - DEBUG - Taking top 8 variants by coverage in window 9:118616540-118616541
2012-10-07 19:05:30,350 - DEBUG - Taking top 8 variants by coverage in window 9:118621278-118621279
2012-10-07 19:05:30,952 - DEBUG - Taking top 8 variants by coverage in window 9:118624272-118624273
2012-10-07 19:05:31,003 - DEBUG - Taking top 8 variants by coverage in window 9:118624738-118624739
2012-10-07 19:05:32,255 - DEBUG - Taking top 8 variants by coverage in window 9:118638673-118638675
2012-10-07 19:05:32,273 - DEBUG - Taking top 8 variants by coverage in window 9:118638690-118638691
2012-10-07 19:05:32,493 - DEBUG - Taking top 8 variants by coverage in window 9:118640302-118640303
2012-10-07 19:05:32,551 - DEBUG - Taking top 8 variants by coverage in window 9:118640558-118640564
2012-10-07 19:05:32,615 - DEBUG - Taking top 8 variants by coverage in window 9:118640666-118640667
2012-10-07 19:05:32,627 - DEBUG - Taking top 8 variants by coverage in window 9:118640668-118640669
2012-10-07 19:05:33,057 - DEBUG - Taking top 8 variants by coverage in window 9:118646505-118646508
2012-10-07 19:05:33,344 - DEBUG - Taking top 8 variants by coverage in window 9:118649377-118649380
2012-10-07 19:05:33,445 - DEBUG - Taking top 8 variants by coverage in window 9:118649390-118649391
2012-10-07 19:05:33,865 - DEBUG - Taking top 8 variants by coverage in window 9:118652735-118652741
2012-10-07 19:05:34,541 - DEBUG - Taking top 8 variants by coverage in window 9:118659879-118659880
2012-10-07 19:05:34,639 - DEBUG - Taking top 8 variants by coverage in window 9:118660538-118660539
2012-10-07 19:05:34,965 - DEBUG - Taking top 8 variants by coverage in window 9:118661095-118661096
2012-10-07 19:05:35,195 - DEBUG - Taking top 8 variants by coverage in window 9:118663198-118663199
2012-10-07 19:05:35,209 - DEBUG - Taking top 8 variants by coverage in window 9:118663200-118663201
2012-10-07 19:05:35,345 - DEBUG - Taking top 8 variants by coverage in window 9:118664563-118664565
2012-10-07 19:05:35,398 - DEBUG - Taking top 8 variants by coverage in window 9:118665001-118665016
2012-10-07 19:05:35,530 - DEBUG - Taking top 8 variants by coverage in window 9:118666175-118666176
2012-10-07 19:05:35,633 - DEBUG - Taking top 8 variants by coverage in window 9:118666759-118666760
2012-10-07 19:05:35,744 - DEBUG - Taking top 8 variants by coverage in window 9:118667308-118667315
2012-10-07 19:05:36,059 - DEBUG - Taking top 8 variants by coverage in window 9:118667345-118667349
2012-10-07 19:05:36,141 - DEBUG - Taking top 8 variants by coverage in window 9:118667359-118667360
2012-10-07 19:05:36,231 - DEBUG - Taking top 8 variants by coverage in window 9:118667373-118667374
2012-10-07 19:05:36,666 - DEBUG - Taking top 8 variants by coverage in window 9:118670410-118670411
2012-10-07 19:05:37,464 - DEBUG - Taking top 8 variants by coverage in window 9:118677324-118677326
2012-10-07 19:05:37,516 - DEBUG - Taking top 8 variants by coverage in window 9:118677340-118677341
2012-10-07 19:05:37,672 - DEBUG - Taking top 8 variants by coverage in window 9:118677950-118677951
2012-10-07 19:05:37,813 - DEBUG - Taking top 8 variants by coverage in window 9:118678706-118678708
2012-10-07 19:05:37,927 - DEBUG - Taking top 8 variants by coverage in window 9:118679107-118679123
2012-10-07 19:05:38,645 - DEBUG - Taking top 8 variants by coverage in window 9:118684749-118684750
2012-10-07 19:05:39,554 - DEBUG - Taking top 8 variants by coverage in window 9:118691829-118691830
2012-10-07 19:05:40,230 - DEBUG - Taking top 8 variants by coverage in window 9:118697818-118697819
2012-10-07 19:05:40,579 - DEBUG - Taking top 8 variants by coverage in window 9:118702079-118702081
2012-10-07 19:05:40,687 - DEBUG - Taking top 8 variants by coverage in window 9:118703133-118703142
2012-10-07 19:05:41,169 - DEBUG - Taking top 8 variants by coverage in window 9:118707297-118707307
2012-10-07 19:05:41,611 - DEBUG - Taking top 8 variants by coverage in window 9:118709066-118709067
2012-10-07 19:05:42,032 - DEBUG - Taking top 8 variants by coverage in window 9:118713114-118713115
2012-10-07 19:05:42,661 - DEBUG - Taking top 8 variants by coverage in window 9:118718751-118718756
2012-10-07 19:05:43,048 - DEBUG - Taking top 8 variants by coverage in window 9:118721728-118721742
2012-10-07 19:05:44,084 - DEBUG - Taking top 8 variants by coverage in window 9:118726684-118726685
2012-10-07 19:05:44,988 - DEBUG - Taking top 8 variants by coverage in window 9:118733268-118733269
2012-10-07 19:05:45,269 - DEBUG - Taking top 8 variants by coverage in window 9:118735322-118735323
2012-10-07 19:05:45,302 - DEBUG - Taking top 8 variants by coverage in window 9:118735341-118735342
2012-10-07 19:05:45,643 - DEBUG - Taking top 8 variants by coverage in window 9:118737444-118737445
2012-10-07 19:05:45,850 - DEBUG - Taking top 8 variants by coverage in window 9:118737618-118737619
2012-10-07 19:05:46,064 - DEBUG - Taking top 8 variants by coverage in window 9:118738346-118738347
2012-10-07 19:05:46,093 - DEBUG - Taking top 8 variants by coverage in window 9:118738351-118738352
2012-10-07 19:05:46,961 - DEBUG - Taking top 8 variants by coverage in window 9:118744707-118744710
2012-10-07 19:05:46,991 - DEBUG - Taking top 8 variants by coverage in window 9:118744711-118744712
2012-10-07 19:05:47,108 - DEBUG - Taking top 8 variants by coverage in window 9:118744741-118744742
2012-10-07 19:05:47,275 - DEBUG - Taking top 8 variants by coverage in window 9:118744913-118744914
2012-10-07 19:05:47,557 - DEBUG - Taking top 8 variants by coverage in window 9:118745393-118745411
2012-10-07 19:05:47,758 - DEBUG - Taking top 8 variants by coverage in window 9:118745942-118745945
2012-10-07 19:05:47,871 - DEBUG - Taking top 8 variants by coverage in window 9:118745968-118745969
2012-10-07 19:05:49,332 - DEBUG - Taking top 8 variants by coverage in window 9:118760694-118760695
2012-10-07 19:05:49,536 - DEBUG - Taking top 8 variants by coverage in window 9:118761054-118761056
2012-10-07 19:05:49,645 - DEBUG - Taking top 8 variants by coverage in window 9:118761082-118761083
2012-10-07 19:05:50,466 - DEBUG - Taking top 8 variants by coverage in window 9:118767619-118767621
2012-10-07 19:05:51,606 - DEBUG - Taking top 8 variants by coverage in window 9:118776729-118776730
2012-10-07 19:05:52,341 - DEBUG - Taking top 8 variants by coverage in window 9:118783624-118783625
2012-10-07 19:05:52,522 - DEBUG - Taking top 8 variants by coverage in window 9:118784731-118784732
2012-10-07 19:05:52,932 - DEBUG - Taking top 8 variants by coverage in window 9:118789324-118789339
2012-10-07 19:05:54,255 - DEBUG - Taking top 8 variants by coverage in window 9:118799499-118799500
2012-10-07 19:05:54,644 - DEBUG - Taking top 8 variants by coverage in window 9:118804225-118804235
2012-10-07 19:05:54,787 - DEBUG - Taking top 8 variants by coverage in window 9:118805586-118805587
2012-10-07 19:05:54,890 - DEBUG - Taking top 8 variants by coverage in window 9:118805900-118805906
2012-10-07 19:05:55,604 - DEBUG - Taking top 8 variants by coverage in window 9:118813382-118813383
2012-10-07 19:05:57,464 - DEBUG - Taking top 8 variants by coverage in window 9:118830329-118830330
2012-10-07 19:05:57,592 - DEBUG - Taking top 8 variants by coverage in window 9:118830382-118830383
2012-10-07 19:05:57,776 - DEBUG - Taking top 8 variants by coverage in window 9:118832035-118832036
2012-10-07 19:05:58,220 - DEBUG - Taking top 8 variants by coverage in window 9:118838306-118838309
2012-10-07 19:05:58,442 - DEBUG - Taking top 8 variants by coverage in window 9:118841121-118841130
2012-10-07 19:05:59,172 - DEBUG - Taking top 8 variants by coverage in window 9:118848183-118848184
2012-10-07 19:05:59,366 - DEBUG - Taking top 8 variants by coverage in window 9:118850220-118850221
2012-10-07 19:06:00,020 - DEBUG - Taking top 8 variants by coverage in window 9:118855156-118855172
2012-10-07 19:06:05,382 - DEBUG - Taking top 8 variants by coverage in window 9:118857048-118857049
2012-10-07 19:06:05,422 - DEBUG - Taking top 8 variants by coverage in window 9:118857609-118857631
2012-10-07 19:06:06,034 - DEBUG - Taking top 8 variants by coverage in window 9:118860927-118860929
2012-10-07 19:06:07,657 - DEBUG - Taking top 8 variants by coverage in window 9:118875683-118875684
2012-10-07 19:06:08,897 - DEBUG - Taking top 8 variants by coverage in window 9:118886936-118886937
2012-10-07 19:06:09,633 - DEBUG - Taking top 8 variants by coverage in window 9:118895004-118895005
2012-10-07 19:06:11,043 - DEBUG - Taking top 8 variants by coverage in window 9:118908227-118908228
2012-10-07 19:06:11,227 - DEBUG - Taking top 8 variants by coverage in window 9:118910793-118910794
2012-10-07 19:06:11,240 - DEBUG - Taking top 8 variants by coverage in window 9:118910796-118910797
2012-10-07 19:06:11,474 - DEBUG - Taking top 8 variants by coverage in window 9:118912002-118912014
2012-10-07 19:06:12,156 - DEBUG - Taking top 8 variants by coverage in window 9:118912020-118912031
2012-10-07 19:06:14,167 - DEBUG - Taking top 8 variants by coverage in window 9:118912032-118912040
2012-10-07 19:06:14,790 - DEBUG - Taking top 8 variants by coverage in window 9:118913312-118913313
2012-10-07 19:06:14,908 - DEBUG - Taking top 8 variants by coverage in window 9:118913967-118913968
2012-10-07 19:06:14,925 - DEBUG - Taking top 8 variants by coverage in window 9:118913969-118913971
2012-10-07 19:06:15,468 - DEBUG - Taking top 8 variants by coverage in window 9:118918739-118918740
2012-10-07 19:06:15,825 - DEBUG - Taking top 8 variants by coverage in window 9:118920827-118920839
2012-10-07 19:06:15,943 - DEBUG - Taking top 8 variants by coverage in window 9:118921960-118921961
2012-10-07 19:06:16,271 - DEBUG - Taking top 8 variants by coverage in window 9:118924070-118924071
2012-10-07 19:06:16,508 - DEBUG - Taking top 8 variants by coverage in window 9:118924581-118924582
2012-10-07 19:06:20,857 - DEBUG - Taking top 8 variants by coverage in window 9:118970375-118970376
2012-10-07 19:06:21,233 - DEBUG - Taking top 8 variants by coverage in window 9:118975421-118975423
2012-10-07 19:06:21,872 - DEBUG - Taking top 8 variants by coverage in window 9:118980575-118980576
2012-10-07 19:06:22,445 - DEBUG - Taking top 8 variants by coverage in window 9:118988673-118988683
2012-10-07 19:06:23,058 - DEBUG - Taking top 8 variants by coverage in window 9:118995463-118995464
2012-10-07 19:06:24,393 - DEBUG - Read 108677 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 19:06:24,675 - DEBUG - Read 119640 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 19:06:24,963 - DEBUG - Read 134931 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 19:06:25,304 - DEBUG - Read 140196 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 19:06:25,615 - DEBUG - Read 127482 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 19:06:25,894 - DEBUG - Read 123452 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 19:06:26,184 - DEBUG - Read 131197 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 19:06:26,476 - DEBUG - Read 120860 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 19:06:26,747 - DEBUG - Read 115129 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 19:06:27,017 - DEBUG - Read 110905 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 19:06:27,315 - DEBUG - Read 126273 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 19:06:27,577 - DEBUG - Read 116789 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 19:06:27,860 - DEBUG - Read 119387 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 19:06:28,137 - DEBUG - Read 129493 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 19:06:28,443 - DEBUG - Read 139567 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 19:06:28,702 - DEBUG - Read 108402 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 19:06:28,989 - DEBUG - Read 133330 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 19:06:29,276 - DEBUG - Read 123631 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 19:06:29,539 - DEBUG - Read 116797 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 19:06:29,802 - DEBUG - Read 106753 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 19:06:29,924 - DEBUG - Detected 26936 variants in 108677 reads
2012-10-07 19:06:30,119 - DEBUG - Detected 38548 variants in 119640 reads
2012-10-07 19:06:30,375 - DEBUG - Detected 49491 variants in 134931 reads
2012-10-07 19:06:30,681 - DEBUG - Detected 59242 variants in 140196 reads
2012-10-07 19:06:31,014 - DEBUG - Detected 66408 variants in 127482 reads
2012-10-07 19:06:31,376 - DEBUG - Detected 73167 variants in 123452 reads
2012-10-07 19:06:31,811 - DEBUG - Detected 88075 variants in 131197 reads
2012-10-07 19:06:32,277 - DEBUG - Detected 95319 variants in 120860 reads
2012-10-07 19:06:32,767 - DEBUG - Detected 102225 variants in 115129 reads
2012-10-07 19:06:33,286 - DEBUG - Detected 108017 variants in 110905 reads
2012-10-07 19:06:33,835 - DEBUG - Detected 113434 variants in 126273 reads
2012-10-07 19:06:34,428 - DEBUG - Detected 117947 variants in 116789 reads
2012-10-07 19:06:35,012 - DEBUG - Detected 123136 variants in 119387 reads
2012-10-07 19:06:35,633 - DEBUG - Detected 128681 variants in 129493 reads
2012-10-07 19:06:36,293 - DEBUG - Detected 137454 variants in 139567 reads
2012-10-07 19:06:37,005 - DEBUG - Detected 141767 variants in 108402 reads
2012-10-07 19:06:37,720 - DEBUG - Detected 146328 variants in 133330 reads
2012-10-07 19:06:38,444 - DEBUG - Detected 150631 variants in 123631 reads
2012-10-07 19:06:39,180 - DEBUG - Detected 156485 variants in 116797 reads
2012-10-07 19:06:39,981 - DEBUG - Detected 161097 variants in 106753 reads
2012-10-07 19:06:41,671 - DEBUG - Taking top 8 variants by coverage in window 9:119011011-119011017
2012-10-07 19:06:42,323 - DEBUG - Taking top 8 variants by coverage in window 9:119018828-119018829
2012-10-07 19:06:42,761 - DEBUG - Taking top 8 variants by coverage in window 9:119024835-119024836
2012-10-07 19:06:44,559 - DEBUG - Taking top 8 variants by coverage in window 9:119034187-119034191
2012-10-07 19:06:44,858 - DEBUG - Taking top 8 variants by coverage in window 9:119035496-119035497
2012-10-07 19:06:47,273 - DEBUG - Taking top 8 variants by coverage in window 9:119070976-119070999
2012-10-07 19:06:48,342 - DEBUG - Taking top 8 variants by coverage in window 9:119084908-119084909
2012-10-07 19:06:48,807 - DEBUG - Taking top 8 variants by coverage in window 9:119089301-119089302
2012-10-07 19:06:48,876 - DEBUG - Taking top 8 variants by coverage in window 9:119089317-119089321
2012-10-07 19:06:49,117 - DEBUG - Taking top 8 variants by coverage in window 9:119091057-119091058
2012-10-07 19:06:49,125 - DEBUG - Taking top 8 variants by coverage in window 9:119091060-119091061
2012-10-07 19:06:49,402 - DEBUG - Taking top 8 variants by coverage in window 9:119094650-119094662
2012-10-07 19:06:49,467 - DEBUG - Taking top 8 variants by coverage in window 9:119094748-119094749
2012-10-07 19:06:49,589 - DEBUG - Taking top 8 variants by coverage in window 9:119095726-119095729
2012-10-07 19:06:49,741 - DEBUG - Taking top 8 variants by coverage in window 9:119097582-119097598
2012-10-07 19:06:50,007 - DEBUG - Taking top 8 variants by coverage in window 9:119098428-119098429
2012-10-07 19:06:50,132 - DEBUG - Taking top 8 variants by coverage in window 9:119100643-119100644
2012-10-07 19:06:50,550 - DEBUG - Taking top 8 variants by coverage in window 9:119106616-119106617
2012-10-07 19:06:50,716 - DEBUG - Taking top 8 variants by coverage in window 9:119108880-119108894
2012-10-07 19:06:50,814 - DEBUG - Taking top 8 variants by coverage in window 9:119110504-119110509
2012-10-07 19:06:50,921 - DEBUG - Taking top 8 variants by coverage in window 9:119111617-119111618
2012-10-07 19:06:51,871 - DEBUG - Taking top 8 variants by coverage in window 9:119122658-119122659
2012-10-07 19:06:54,004 - DEBUG - Taking top 8 variants by coverage in window 9:119142905-119142906
2012-10-07 19:06:54,162 - DEBUG - Taking top 8 variants by coverage in window 9:119144388-119144391
2012-10-07 19:06:54,202 - DEBUG - Taking top 8 variants by coverage in window 9:119144471-119144472
2012-10-07 19:06:54,630 - DEBUG - Taking top 8 variants by coverage in window 9:119150787-119150788
2012-10-07 19:06:54,687 - DEBUG - Taking top 8 variants by coverage in window 9:119150791-119150792
2012-10-07 19:06:54,799 - DEBUG - Taking top 8 variants by coverage in window 9:119150942-119150943
2012-10-07 19:06:55,025 - DEBUG - Taking top 8 variants by coverage in window 9:119157791-119157792
2012-10-07 19:06:55,126 - DEBUG - Taking top 8 variants by coverage in window 9:119159885-119159886
2012-10-07 19:06:55,444 - DEBUG - Taking top 8 variants by coverage in window 9:119166346-119166347
2012-10-07 19:06:55,489 - DEBUG - Taking top 8 variants by coverage in window 9:119166411-119166415
2012-10-07 19:06:55,682 - DEBUG - Taking top 8 variants by coverage in window 9:119169082-119169083
2012-10-07 19:06:55,826 - DEBUG - Taking top 8 variants by coverage in window 9:119169157-119169158
2012-10-07 19:06:56,134 - DEBUG - Taking top 8 variants by coverage in window 9:119175350-119175351
2012-10-07 19:06:56,331 - DEBUG - Taking top 8 variants by coverage in window 9:119179943-119179944
2012-10-07 19:06:56,348 - DEBUG - Taking top 8 variants by coverage in window 9:119179944-119179945
2012-10-07 19:06:56,355 - DEBUG - Taking top 8 variants by coverage in window 9:119179945-119179946
2012-10-07 19:06:57,501 - DEBUG - Taking top 8 variants by coverage in window 9:119196411-119196412
2012-10-07 19:06:58,621 - DEBUG - Taking top 8 variants by coverage in window 9:119218899-119218903
2012-10-07 19:06:59,246 - DEBUG - Taking top 8 variants by coverage in window 9:119227435-119227436
2012-10-07 19:07:01,017 - DEBUG - Taking top 8 variants by coverage in window 9:119255934-119255937
2012-10-07 19:07:01,432 - DEBUG - Taking top 8 variants by coverage in window 9:119256090-119256093
2012-10-07 19:07:01,657 - DEBUG - Taking top 8 variants by coverage in window 9:119256126-119256131
2012-10-07 19:07:01,895 - DEBUG - Taking top 8 variants by coverage in window 9:119256180-119256188
2012-10-07 19:07:02,569 - DEBUG - Taking top 8 variants by coverage in window 9:119259502-119259503
2012-10-07 19:07:03,080 - DEBUG - Taking top 8 variants by coverage in window 9:119265690-119265692
2012-10-07 19:07:03,093 - DEBUG - Taking top 8 variants by coverage in window 9:119265701-119265703
2012-10-07 19:07:03,346 - DEBUG - Taking top 8 variants by coverage in window 9:119268734-119268737
2012-10-07 19:07:03,684 - DEBUG - Taking top 8 variants by coverage in window 9:119270737-119270738
2012-10-07 19:07:03,947 - DEBUG - Taking top 8 variants by coverage in window 9:119273174-119273175
2012-10-07 19:07:04,193 - DEBUG - Taking top 8 variants by coverage in window 9:119274391-119274392
2012-10-07 19:07:04,305 - DEBUG - Taking top 8 variants by coverage in window 9:119274829-119274830
2012-10-07 19:07:05,017 - DEBUG - Taking top 8 variants by coverage in window 9:119277412-119277413
2012-10-07 19:07:05,050 - DEBUG - Taking top 8 variants by coverage in window 9:119277416-119277417
2012-10-07 19:07:05,093 - DEBUG - Taking top 8 variants by coverage in window 9:119277480-119277492
2012-10-07 19:07:05,206 - DEBUG - Taking top 8 variants by coverage in window 9:119277841-119277842
2012-10-07 19:07:05,706 - DEBUG - Taking top 8 variants by coverage in window 9:119280735-119280736
2012-10-07 19:07:05,802 - DEBUG - Taking top 8 variants by coverage in window 9:119280743-119280745
2012-10-07 19:07:06,316 - DEBUG - Taking top 8 variants by coverage in window 9:119280746-119280750
2012-10-07 19:07:07,087 - DEBUG - Taking top 8 variants by coverage in window 9:119281950-119281951
2012-10-07 19:07:07,109 - DEBUG - Taking top 8 variants by coverage in window 9:119281956-119281957
2012-10-07 19:07:07,402 - DEBUG - Taking top 8 variants by coverage in window 9:119283646-119283647
2012-10-07 19:07:07,452 - DEBUG - Taking top 8 variants by coverage in window 9:119283671-119283675
2012-10-07 19:07:07,468 - DEBUG - Taking top 8 variants by coverage in window 9:119283676-119283677
2012-10-07 19:07:07,514 - DEBUG - Taking top 8 variants by coverage in window 9:119283682-119283683
2012-10-07 19:07:09,883 - DEBUG - Taking top 8 variants by coverage in window 9:119299316-119299324
2012-10-07 19:07:10,512 - DEBUG - Taking top 8 variants by coverage in window 9:119304705-119304710
2012-10-07 19:07:10,596 - DEBUG - Taking top 8 variants by coverage in window 9:119305074-119305076
2012-10-07 19:07:10,936 - DEBUG - Taking top 8 variants by coverage in window 9:119307810-119307811
2012-10-07 19:07:10,948 - DEBUG - Taking top 8 variants by coverage in window 9:119307811-119307812
2012-10-07 19:07:11,324 - DEBUG - Taking top 8 variants by coverage in window 9:119314164-119314165
2012-10-07 19:07:11,474 - DEBUG - Taking top 8 variants by coverage in window 9:119315344-119315345
2012-10-07 19:07:11,586 - DEBUG - Taking top 8 variants by coverage in window 9:119315843-119315844
2012-10-07 19:07:11,674 - DEBUG - Taking top 8 variants by coverage in window 9:119316068-119316071
2012-10-07 19:07:12,384 - DEBUG - Taking top 8 variants by coverage in window 9:119324518-119324519
2012-10-07 19:07:12,600 - DEBUG - Taking top 8 variants by coverage in window 9:119325477-119325480
2012-10-07 19:07:12,949 - DEBUG - Taking top 8 variants by coverage in window 9:119328293-119328294
2012-10-07 19:07:13,218 - DEBUG - Taking top 8 variants by coverage in window 9:119329498-119329499
2012-10-07 19:07:13,364 - DEBUG - Taking top 8 variants by coverage in window 9:119331144-119331150
2012-10-07 19:07:13,610 - DEBUG - Taking top 8 variants by coverage in window 9:119331589-119331591
2012-10-07 19:07:13,868 - DEBUG - Taking top 8 variants by coverage in window 9:119334262-119334263
2012-10-07 19:07:14,040 - DEBUG - Taking top 8 variants by coverage in window 9:119336172-119336173
2012-10-07 19:07:14,481 - DEBUG - Taking top 8 variants by coverage in window 9:119339222-119339225
2012-10-07 19:07:14,519 - DEBUG - Taking top 8 variants by coverage in window 9:119339229-119339230
2012-10-07 19:07:14,963 - DEBUG - Taking top 8 variants by coverage in window 9:119346155-119346156
2012-10-07 19:07:15,350 - DEBUG - Taking top 8 variants by coverage in window 9:119351487-119351488
2012-10-07 19:07:15,756 - DEBUG - Taking top 8 variants by coverage in window 9:119358535-119358536
2012-10-07 19:07:16,410 - DEBUG - Taking top 8 variants by coverage in window 9:119365700-119365705
2012-10-07 19:07:16,760 - DEBUG - Taking top 8 variants by coverage in window 9:119370837-119370838
2012-10-07 19:07:17,358 - DEBUG - Taking top 8 variants by coverage in window 9:119379950-119379951
2012-10-07 19:07:17,589 - DEBUG - Taking top 8 variants by coverage in window 9:119382652-119382653
2012-10-07 19:07:18,043 - DEBUG - Taking top 8 variants by coverage in window 9:119385624-119385625
2012-10-07 19:07:19,256 - DEBUG - Taking top 8 variants by coverage in window 9:119398615-119398616
2012-10-07 19:07:19,382 - DEBUG - Taking top 8 variants by coverage in window 9:119398700-119398701
2012-10-07 19:07:19,742 - DEBUG - Taking top 8 variants by coverage in window 9:119400947-119400963
2012-10-07 19:07:19,968 - DEBUG - Taking top 8 variants by coverage in window 9:119402074-119402080
2012-10-07 19:07:20,227 - DEBUG - Taking top 8 variants by coverage in window 9:119403596-119403597
2012-10-07 19:07:20,510 - DEBUG - Taking top 8 variants by coverage in window 9:119405920-119405925
2012-10-07 19:07:20,612 - DEBUG - Taking top 8 variants by coverage in window 9:119406629-119406636
2012-10-07 19:07:21,506 - DEBUG - Taking top 8 variants by coverage in window 9:119413905-119413906
2012-10-07 19:07:24,563 - DEBUG - Taking top 8 variants by coverage in window 9:119437221-119437230
2012-10-07 19:07:25,593 - DEBUG - Taking top 8 variants by coverage in window 9:119439472-119439473
2012-10-07 19:07:26,017 - DEBUG - Taking top 8 variants by coverage in window 9:119441850-119441854
2012-10-07 19:07:26,038 - DEBUG - Taking top 8 variants by coverage in window 9:119441855-119441856
2012-10-07 19:07:26,572 - DEBUG - Taking top 8 variants by coverage in window 9:119444849-119444850
2012-10-07 19:07:27,044 - DEBUG - Taking top 8 variants by coverage in window 9:119447972-119447973
2012-10-07 19:07:27,137 - DEBUG - Taking top 8 variants by coverage in window 9:119448190-119448191
2012-10-07 19:07:27,241 - DEBUG - Taking top 8 variants by coverage in window 9:119448270-119448271
2012-10-07 19:07:27,420 - DEBUG - Taking top 8 variants by coverage in window 9:119448313-119448314
2012-10-07 19:07:28,256 - DEBUG - Taking top 8 variants by coverage in window 9:119454919-119454922
2012-10-07 19:07:29,312 - DEBUG - Taking top 8 variants by coverage in window 9:119466980-119466981
2012-10-07 19:07:29,646 - DEBUG - Taking top 8 variants by coverage in window 9:119470446-119470447
2012-10-07 19:07:30,277 - DEBUG - Taking top 8 variants by coverage in window 9:119473520-119473521
2012-10-07 19:07:30,404 - DEBUG - Taking top 8 variants by coverage in window 9:119473529-119473530
2012-10-07 19:07:30,821 - DEBUG - Taking top 8 variants by coverage in window 9:119473557-119473558
2012-10-07 19:07:30,988 - DEBUG - Taking top 8 variants by coverage in window 9:119473568-119473569
2012-10-07 19:07:31,075 - DEBUG - Taking top 8 variants by coverage in window 9:119473574-119473577
2012-10-07 19:07:31,151 - DEBUG - Taking top 8 variants by coverage in window 9:119473579-119473580
2012-10-07 19:07:31,860 - DEBUG - Taking top 8 variants by coverage in window 9:119474761-119474762
2012-10-07 19:07:31,978 - DEBUG - Taking top 8 variants by coverage in window 9:119476820-119476835
2012-10-07 19:07:32,364 - DEBUG - Taking top 8 variants by coverage in window 9:119479159-119479161
2012-10-07 19:07:32,639 - DEBUG - Taking top 8 variants by coverage in window 9:119481215-119481216
2012-10-07 19:07:32,893 - DEBUG - Taking top 8 variants by coverage in window 9:119485863-119485864
2012-10-07 19:07:33,117 - DEBUG - Taking top 8 variants by coverage in window 9:119489237-119489238
2012-10-07 19:07:33,161 - DEBUG - Taking top 8 variants by coverage in window 9:119489427-119489434
2012-10-07 19:07:33,210 - DEBUG - Taking top 8 variants by coverage in window 9:119489449-119489451
2012-10-07 19:07:33,228 - DEBUG - Taking top 8 variants by coverage in window 9:119489454-119489455
2012-10-07 19:07:33,400 - DEBUG - Taking top 8 variants by coverage in window 9:119490822-119490823
2012-10-07 19:07:33,435 - DEBUG - Taking top 8 variants by coverage in window 9:119490838-119490839
2012-10-07 19:07:33,605 - DEBUG - Taking top 8 variants by coverage in window 9:119492156-119492160
2012-10-07 19:07:33,669 - DEBUG - Taking top 8 variants by coverage in window 9:119492309-119492310
2012-10-07 19:07:33,768 - DEBUG - Taking top 8 variants by coverage in window 9:119493003-119493004
2012-10-07 19:07:33,829 - DEBUG - Taking top 8 variants by coverage in window 9:119493501-119493502
2012-10-07 19:07:34,139 - DEBUG - Taking top 8 variants by coverage in window 9:119497120-119497121
2012-10-07 19:07:34,232 - DEBUG - Taking top 8 variants by coverage in window 9:119497854-119497855
2012-10-07 19:07:34,293 - DEBUG - Taking top 8 variants by coverage in window 9:119497882-119497883
2012-10-07 19:07:34,336 - DEBUG - Taking top 8 variants by coverage in window 9:119498130-119498131
2012-10-07 19:07:34,558 - DEBUG - Taking top 8 variants by coverage in window 9:119500620-119500622
2012-10-07 19:07:34,813 - DEBUG - Taking top 8 variants by coverage in window 9:119503143-119503144
2012-10-07 19:07:35,248 - DEBUG - Taking top 8 variants by coverage in window 9:119503858-119503861
2012-10-07 19:07:35,721 - DEBUG - Taking top 8 variants by coverage in window 9:119505597-119505598
2012-10-07 19:07:36,136 - DEBUG - Taking top 8 variants by coverage in window 9:119511061-119511063
2012-10-07 19:07:36,474 - DEBUG - Taking top 8 variants by coverage in window 9:119515863-119515864
2012-10-07 19:07:36,533 - DEBUG - Taking top 8 variants by coverage in window 9:119516213-119516214
2012-10-07 19:07:36,654 - DEBUG - Taking top 8 variants by coverage in window 9:119517667-119517668
2012-10-07 19:07:36,680 - DEBUG - Taking top 8 variants by coverage in window 9:119517702-119517703
2012-10-07 19:07:36,974 - DEBUG - Taking top 8 variants by coverage in window 9:119521782-119521783
2012-10-07 19:07:36,987 - DEBUG - Taking top 8 variants by coverage in window 9:119521783-119521784
2012-10-07 19:07:37,537 - DEBUG - Taking top 8 variants by coverage in window 9:119531592-119531593
2012-10-07 19:07:37,685 - DEBUG - Taking top 8 variants by coverage in window 9:119532379-119532380
2012-10-07 19:07:37,718 - DEBUG - Taking top 8 variants by coverage in window 9:119532399-119532400
2012-10-07 19:07:38,331 - DEBUG - Taking top 8 variants by coverage in window 9:119538826-119538833
2012-10-07 19:07:38,939 - DEBUG - Taking top 8 variants by coverage in window 9:119542393-119542394
2012-10-07 19:07:39,051 - DEBUG - Taking top 8 variants by coverage in window 9:119542448-119542449
2012-10-07 19:07:39,118 - DEBUG - Taking top 8 variants by coverage in window 9:119542461-119542466
2012-10-07 19:07:39,791 - DEBUG - Taking top 8 variants by coverage in window 9:119546602-119546603
2012-10-07 19:07:39,968 - DEBUG - Taking top 8 variants by coverage in window 9:119546862-119546863
2012-10-07 19:07:41,058 - DEBUG - Taking top 8 variants by coverage in window 9:119551993-119551998
2012-10-07 19:07:41,338 - DEBUG - Taking top 8 variants by coverage in window 9:119553596-119553597
2012-10-07 19:07:41,821 - DEBUG - Taking top 8 variants by coverage in window 9:119558816-119558817
2012-10-07 19:07:42,844 - DEBUG - Taking top 8 variants by coverage in window 9:119559708-119559709
2012-10-07 19:07:43,592 - DEBUG - Taking top 8 variants by coverage in window 9:119565719-119565720
2012-10-07 19:07:44,663 - DEBUG - Taking top 8 variants by coverage in window 9:119577183-119577184
2012-10-07 19:07:44,748 - DEBUG - Taking top 8 variants by coverage in window 9:119578110-119578116
2012-10-07 19:07:44,922 - DEBUG - Taking top 8 variants by coverage in window 9:119580497-119580498
2012-10-07 19:07:45,048 - DEBUG - Taking top 8 variants by coverage in window 9:119582878-119582879
2012-10-07 19:07:45,072 - DEBUG - Taking top 8 variants by coverage in window 9:119582882-119582883
2012-10-07 19:07:45,343 - DEBUG - Taking top 8 variants by coverage in window 9:119586415-119586416
2012-10-07 19:07:46,335 - DEBUG - Taking top 8 variants by coverage in window 9:119601029-119601030
2012-10-07 19:07:46,519 - DEBUG - Taking top 8 variants by coverage in window 9:119601586-119601587
2012-10-07 19:07:46,993 - DEBUG - Taking top 8 variants by coverage in window 9:119604985-119604986
2012-10-07 19:07:47,628 - DEBUG - Taking top 8 variants by coverage in window 9:119611780-119611781
2012-10-07 19:07:47,798 - DEBUG - Taking top 8 variants by coverage in window 9:119612911-119612912
2012-10-07 19:07:48,065 - DEBUG - Taking top 8 variants by coverage in window 9:119615570-119615571
2012-10-07 19:07:48,112 - DEBUG - Taking top 8 variants by coverage in window 9:119615619-119615620
2012-10-07 19:07:48,144 - DEBUG - Taking top 8 variants by coverage in window 9:119615696-119615697
2012-10-07 19:07:49,279 - DEBUG - Taking top 8 variants by coverage in window 9:119621729-119621730
2012-10-07 19:07:49,478 - DEBUG - Taking top 8 variants by coverage in window 9:119623563-119623564
2012-10-07 19:07:50,582 - DEBUG - Taking top 8 variants by coverage in window 9:119637834-119637835
2012-10-07 19:07:50,617 - DEBUG - Taking top 8 variants by coverage in window 9:119637877-119637878
2012-10-07 19:07:51,012 - DEBUG - Taking top 8 variants by coverage in window 9:119645989-119645990
2012-10-07 19:07:51,161 - DEBUG - Taking top 8 variants by coverage in window 9:119647750-119647751
2012-10-07 19:07:51,649 - DEBUG - Taking top 8 variants by coverage in window 9:119653013-119653014
2012-10-07 19:07:52,341 - DEBUG - Taking top 8 variants by coverage in window 9:119662202-119662203
2012-10-07 19:07:52,849 - DEBUG - Taking top 8 variants by coverage in window 9:119672996-119672997
2012-10-07 19:07:53,255 - DEBUG - Taking top 8 variants by coverage in window 9:119675749-119675750
2012-10-07 19:07:53,404 - DEBUG - Taking top 8 variants by coverage in window 9:119677843-119677844
2012-10-07 19:07:53,434 - DEBUG - Taking top 8 variants by coverage in window 9:119677875-119677876
2012-10-07 19:07:53,618 - DEBUG - Taking top 8 variants by coverage in window 9:119681101-119681102
2012-10-07 19:07:53,888 - DEBUG - Taking top 8 variants by coverage in window 9:119684047-119684050
2012-10-07 19:07:54,241 - DEBUG - Taking top 8 variants by coverage in window 9:119686198-119686199
2012-10-07 19:07:54,509 - DEBUG - Taking top 8 variants by coverage in window 9:119690414-119690415
2012-10-07 19:07:54,715 - DEBUG - Taking top 8 variants by coverage in window 9:119697934-119697935
2012-10-07 19:07:55,814 - DEBUG - Taking top 8 variants by coverage in window 9:119712046-119712047
2012-10-07 19:07:57,056 - DEBUG - Taking top 8 variants by coverage in window 9:119731025-119731026
2012-10-07 19:07:57,867 - DEBUG - Taking top 8 variants by coverage in window 9:119737180-119737181
2012-10-07 19:07:58,180 - DEBUG - Taking top 8 variants by coverage in window 9:119739007-119739008
2012-10-07 19:07:58,213 - DEBUG - Taking top 8 variants by coverage in window 9:119739023-119739024
2012-10-07 19:07:58,422 - DEBUG - Taking top 8 variants by coverage in window 9:119739934-119739935
2012-10-07 19:07:59,051 - DEBUG - Taking top 8 variants by coverage in window 9:119743440-119743441
2012-10-07 19:07:59,149 - DEBUG - Taking top 8 variants by coverage in window 9:119743640-119743641
2012-10-07 19:07:59,248 - DEBUG - Taking top 8 variants by coverage in window 9:119744695-119744696
2012-10-07 19:07:59,647 - DEBUG - Taking top 8 variants by coverage in window 9:119749836-119749837
2012-10-07 19:07:59,971 - DEBUG - Taking top 8 variants by coverage in window 9:119754533-119754534
2012-10-07 19:08:00,736 - DEBUG - Taking top 8 variants by coverage in window 9:119759763-119759764
2012-10-07 19:08:01,099 - DEBUG - Taking top 8 variants by coverage in window 9:119760444-119760447
2012-10-07 19:08:01,828 - DEBUG - Taking top 8 variants by coverage in window 9:119766300-119766301
2012-10-07 19:08:02,237 - DEBUG - Taking top 8 variants by coverage in window 9:119768639-119768640
2012-10-07 19:08:02,384 - DEBUG - Taking top 8 variants by coverage in window 9:119770329-119770330
2012-10-07 19:08:02,539 - DEBUG - Taking top 8 variants by coverage in window 9:119785845-119785846
2012-10-07 19:08:02,907 - DEBUG - Taking top 8 variants by coverage in window 9:119786890-119786892
2012-10-07 19:08:05,242 - DEBUG - Taking top 8 variants by coverage in window 9:119810065-119810066
2012-10-07 19:08:05,439 - DEBUG - Taking top 8 variants by coverage in window 9:119812188-119812189
2012-10-07 19:08:06,125 - DEBUG - Taking top 8 variants by coverage in window 9:119824272-119824275
2012-10-07 19:08:06,148 - DEBUG - Taking top 8 variants by coverage in window 9:119824290-119824291
2012-10-07 19:08:06,420 - DEBUG - Taking top 8 variants by coverage in window 9:119827389-119827390
2012-10-07 19:08:06,453 - DEBUG - Taking top 8 variants by coverage in window 9:119827393-119827394
2012-10-07 19:08:07,288 - DEBUG - Taking top 8 variants by coverage in window 9:119838993-119838994
2012-10-07 19:08:07,388 - DEBUG - Taking top 8 variants by coverage in window 9:119840579-119840581
2012-10-07 19:08:07,551 - DEBUG - Taking top 8 variants by coverage in window 9:119841377-119841381
2012-10-07 19:08:07,578 - DEBUG - Taking top 8 variants by coverage in window 9:119841382-119841383
2012-10-07 19:08:07,602 - DEBUG - Taking top 8 variants by coverage in window 9:119841383-119841384
2012-10-07 19:08:07,628 - DEBUG - Taking top 8 variants by coverage in window 9:119841385-119841387
2012-10-07 19:08:07,872 - DEBUG - Taking top 8 variants by coverage in window 9:119842587-119842588
2012-10-07 19:08:07,887 - DEBUG - Taking top 8 variants by coverage in window 9:119842592-119842593
2012-10-07 19:08:08,024 - DEBUG - Taking top 8 variants by coverage in window 9:119844156-119844161
2012-10-07 19:08:08,057 - DEBUG - Taking top 8 variants by coverage in window 9:119844371-119844372
2012-10-07 19:08:08,091 - DEBUG - Taking top 8 variants by coverage in window 9:119844608-119844609
2012-10-07 19:08:08,177 - DEBUG - Taking top 8 variants by coverage in window 9:119845979-119845980
2012-10-07 19:08:08,489 - DEBUG - Taking top 8 variants by coverage in window 9:119850542-119850543
2012-10-07 19:08:08,519 - DEBUG - Taking top 8 variants by coverage in window 9:119850562-119850563
2012-10-07 19:08:08,878 - DEBUG - Taking top 8 variants by coverage in window 9:119856251-119856252
2012-10-07 19:08:09,174 - DEBUG - Taking top 8 variants by coverage in window 9:119859671-119859672
2012-10-07 19:08:09,202 - DEBUG - Taking top 8 variants by coverage in window 9:119859692-119859693
2012-10-07 19:08:09,429 - DEBUG - Taking top 8 variants by coverage in window 9:119861535-119861536
2012-10-07 19:08:09,575 - DEBUG - Taking top 8 variants by coverage in window 9:119863079-119863080
2012-10-07 19:08:09,718 - DEBUG - Taking top 8 variants by coverage in window 9:119864768-119864769
2012-10-07 19:08:10,031 - DEBUG - Taking top 8 variants by coverage in window 9:119867675-119867676
2012-10-07 19:08:10,371 - DEBUG - Taking top 8 variants by coverage in window 9:119869687-119869688
2012-10-07 19:08:10,671 - DEBUG - Taking top 8 variants by coverage in window 9:119874051-119874052
2012-10-07 19:08:11,078 - DEBUG - Taking top 8 variants by coverage in window 9:119878651-119878652
2012-10-07 19:08:11,983 - DEBUG - Taking top 8 variants by coverage in window 9:119894800-119894801
2012-10-07 19:08:12,173 - DEBUG - Taking top 8 variants by coverage in window 9:119894824-119894825
2012-10-07 19:08:12,306 - DEBUG - Taking top 8 variants by coverage in window 9:119895614-119895615
2012-10-07 19:08:12,891 - DEBUG - Taking top 8 variants by coverage in window 9:119902549-119902550
2012-10-07 19:08:13,109 - DEBUG - Taking top 8 variants by coverage in window 9:119903731-119903732
2012-10-07 19:08:13,228 - DEBUG - Taking top 8 variants by coverage in window 9:119904459-119904460
2012-10-07 19:08:13,520 - DEBUG - Taking top 8 variants by coverage in window 9:119907651-119907661
2012-10-07 19:08:13,882 - DEBUG - Taking top 8 variants by coverage in window 9:119908636-119908637
2012-10-07 19:08:14,198 - DEBUG - Taking top 8 variants by coverage in window 9:119912566-119912570
2012-10-07 19:08:14,373 - DEBUG - Taking top 8 variants by coverage in window 9:119912666-119912671
2012-10-07 19:08:16,452 - DEBUG - Taking top 8 variants by coverage in window 9:119938577-119938578
2012-10-07 19:08:16,466 - DEBUG - Taking top 8 variants by coverage in window 9:119938592-119938594
2012-10-07 19:08:16,539 - DEBUG - Taking top 8 variants by coverage in window 9:119938961-119938962
2012-10-07 19:08:16,731 - DEBUG - Taking top 8 variants by coverage in window 9:119939286-119939287
2012-10-07 19:08:17,028 - DEBUG - Taking top 8 variants by coverage in window 9:119941187-119941188
2012-10-07 19:08:17,128 - DEBUG - Taking top 8 variants by coverage in window 9:119942138-119942143
2012-10-07 19:08:17,284 - DEBUG - Taking top 8 variants by coverage in window 9:119942516-119942517
2012-10-07 19:08:17,666 - DEBUG - Taking top 8 variants by coverage in window 9:119945781-119945783
2012-10-07 19:08:18,018 - DEBUG - Taking top 8 variants by coverage in window 9:119949129-119949130
2012-10-07 19:08:18,062 - DEBUG - Taking top 8 variants by coverage in window 9:119949136-119949137
2012-10-07 19:08:18,397 - DEBUG - Taking top 8 variants by coverage in window 9:119951263-119951267
2012-10-07 19:08:18,466 - DEBUG - Taking top 8 variants by coverage in window 9:119951331-119951341
2012-10-07 19:08:19,715 - DEBUG - Taking top 8 variants by coverage in window 9:119953722-119953725
2012-10-07 19:08:20,221 - DEBUG - Taking top 8 variants by coverage in window 9:119954510-119954511
2012-10-07 19:08:21,368 - DEBUG - Taking top 8 variants by coverage in window 9:119965781-119965783
2012-10-07 19:08:21,995 - DEBUG - Taking top 8 variants by coverage in window 9:119965833-119965841
2012-10-07 19:08:22,875 - DEBUG - Taking top 8 variants by coverage in window 9:119965845-119965851
2012-10-07 19:08:23,051 - DEBUG - Taking top 8 variants by coverage in window 9:119965857-119965863
2012-10-07 19:08:23,509 - DEBUG - Taking top 8 variants by coverage in window 9:119965869-119965870
2012-10-07 19:08:23,960 - DEBUG - Taking top 8 variants by coverage in window 9:119967529-119967531
2012-10-07 19:08:24,157 - DEBUG - Taking top 8 variants by coverage in window 9:119967532-119967533
2012-10-07 19:08:24,446 - DEBUG - Taking top 8 variants by coverage in window 9:119968980-119968981
2012-10-07 19:08:24,472 - DEBUG - Taking top 8 variants by coverage in window 9:119969025-119969026
2012-10-07 19:08:25,719 - DEBUG - Taking top 8 variants by coverage in window 9:119979471-119979474
2012-10-07 19:08:25,990 - DEBUG - Taking top 8 variants by coverage in window 9:119980169-119980181
2012-10-07 19:08:26,730 - DEBUG - Taking top 8 variants by coverage in window 9:119984421-119984422
2012-10-07 19:08:27,122 - DEBUG - Taking top 8 variants by coverage in window 9:119986112-119986117
2012-10-07 19:08:27,796 - DEBUG - Taking top 8 variants by coverage in window 9:119991960-119991961
2012-10-07 19:08:28,399 - DEBUG - Taking top 8 variants by coverage in window 9:119993629-119993630
2012-10-07 19:08:28,418 - DEBUG - Taking top 8 variants by coverage in window 9:119993632-119993633
2012-10-07 19:08:29,235 - DEBUG - Taking top 8 variants by coverage in window 9:119999528-119999530
2012-10-07 19:08:30,730 - DEBUG - Read 107657 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 19:08:31,013 - DEBUG - Read 120496 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 19:08:31,305 - DEBUG - Read 134941 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 19:08:31,698 - DEBUG - Read 140133 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 19:08:32,011 - DEBUG - Read 127913 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 19:08:32,293 - DEBUG - Read 124434 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 19:08:32,585 - DEBUG - Read 131107 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 19:08:32,880 - DEBUG - Read 121721 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 19:08:33,153 - DEBUG - Read 115627 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 19:08:33,425 - DEBUG - Read 112642 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 19:08:33,721 - DEBUG - Read 126614 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 19:08:33,993 - DEBUG - Read 119919 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 19:08:34,276 - DEBUG - Read 119325 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 19:08:34,557 - DEBUG - Read 129761 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 19:08:34,868 - DEBUG - Read 139781 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 19:08:35,133 - DEBUG - Read 109333 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 19:08:35,423 - DEBUG - Read 133797 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 19:08:35,771 - DEBUG - Read 122744 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 19:08:36,036 - DEBUG - Read 116948 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 19:08:36,302 - DEBUG - Read 106313 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 19:08:36,444 - DEBUG - Detected 33041 variants in 107657 reads
2012-10-07 19:08:36,682 - DEBUG - Detected 44939 variants in 120496 reads
2012-10-07 19:08:36,980 - DEBUG - Detected 61347 variants in 134941 reads
2012-10-07 19:08:37,364 - DEBUG - Detected 71381 variants in 140133 reads
2012-10-07 19:08:37,777 - DEBUG - Detected 80841 variants in 127913 reads
2012-10-07 19:08:38,277 - DEBUG - Detected 88927 variants in 124434 reads
2012-10-07 19:08:38,796 - DEBUG - Detected 104588 variants in 131107 reads
2012-10-07 19:08:39,415 - DEBUG - Detected 112598 variants in 121721 reads
2012-10-07 19:08:40,057 - DEBUG - Detected 120137 variants in 115627 reads
2012-10-07 19:08:40,807 - DEBUG - Detected 126890 variants in 112642 reads
2012-10-07 19:08:41,548 - DEBUG - Detected 133639 variants in 126614 reads
2012-10-07 19:08:42,315 - DEBUG - Detected 139409 variants in 119919 reads
2012-10-07 19:08:43,107 - DEBUG - Detected 145973 variants in 119325 reads
2012-10-07 19:08:44,035 - DEBUG - Detected 152438 variants in 129761 reads
2012-10-07 19:08:44,940 - DEBUG - Detected 161275 variants in 139781 reads
2012-10-07 19:08:45,849 - DEBUG - Detected 166793 variants in 109333 reads
2012-10-07 19:08:46,896 - DEBUG - Detected 172154 variants in 133797 reads
2012-10-07 19:08:47,891 - DEBUG - Detected 176886 variants in 122744 reads
2012-10-07 19:08:48,877 - DEBUG - Detected 182346 variants in 116948 reads
2012-10-07 19:08:49,999 - DEBUG - Detected 187721 variants in 106313 reads
2012-10-07 19:08:51,729 - DEBUG - Taking top 8 variants by coverage in window 9:120001720-120001721
2012-10-07 19:08:52,539 - DEBUG - Taking top 8 variants by coverage in window 9:120009556-120009558
2012-10-07 19:08:54,051 - DEBUG - Taking top 8 variants by coverage in window 9:120021533-120021541
2012-10-07 19:08:54,832 - DEBUG - Taking top 8 variants by coverage in window 9:120023063-120023064
2012-10-07 19:08:55,238 - DEBUG - Taking top 8 variants by coverage in window 9:120026385-120026399
2012-10-07 19:08:55,329 - DEBUG - Taking top 8 variants by coverage in window 9:120026757-120026758
2012-10-07 19:08:55,786 - DEBUG - Taking top 8 variants by coverage in window 9:120030973-120030974
2012-10-07 19:08:55,997 - DEBUG - Taking top 8 variants by coverage in window 9:120032679-120032682
2012-10-07 19:08:56,161 - DEBUG - Taking top 8 variants by coverage in window 9:120032720-120032721
2012-10-07 19:08:56,175 - DEBUG - Taking top 8 variants by coverage in window 9:120032721-120032722
2012-10-07 19:08:57,879 - DEBUG - Taking top 8 variants by coverage in window 9:120041010-120041013
2012-10-07 19:08:57,901 - DEBUG - Taking top 8 variants by coverage in window 9:120041018-120041021
2012-10-07 19:08:58,112 - DEBUG - Taking top 8 variants by coverage in window 9:120041144-120041145
2012-10-07 19:08:58,616 - DEBUG - Taking top 8 variants by coverage in window 9:120044178-120044179
2012-10-07 19:08:58,980 - DEBUG - Taking top 8 variants by coverage in window 9:120047190-120047196
2012-10-07 19:08:59,646 - DEBUG - Taking top 8 variants by coverage in window 9:120047212-120047219
2012-10-07 19:08:59,748 - DEBUG - Taking top 8 variants by coverage in window 9:120047262-120047269
2012-10-07 19:09:00,315 - DEBUG - Taking top 8 variants by coverage in window 9:120050814-120050819
2012-10-07 19:09:02,450 - DEBUG - Taking top 8 variants by coverage in window 9:120056367-120056368
2012-10-07 19:09:02,466 - DEBUG - Taking top 8 variants by coverage in window 9:120056377-120056378
2012-10-07 19:09:02,523 - DEBUG - Taking top 8 variants by coverage in window 9:120056439-120056440
2012-10-07 19:09:02,607 - DEBUG - Taking top 8 variants by coverage in window 9:120056475-120056476
2012-10-07 19:09:03,190 - DEBUG - Taking top 8 variants by coverage in window 9:120059493-120059495
2012-10-07 19:09:04,431 - DEBUG - Taking top 8 variants by coverage in window 9:120070590-120070591
2012-10-07 19:09:04,809 - DEBUG - Taking top 8 variants by coverage in window 9:120076705-120076706
2012-10-07 19:09:05,160 - DEBUG - Taking top 8 variants by coverage in window 9:120082098-120082108
2012-10-07 19:09:05,809 - DEBUG - Taking top 8 variants by coverage in window 9:120083407-120083408
2012-10-07 19:09:05,999 - DEBUG - Taking top 8 variants by coverage in window 9:120084207-120084208
2012-10-07 19:09:06,106 - DEBUG - Taking top 8 variants by coverage in window 9:120084292-120084293
2012-10-07 19:09:06,588 - DEBUG - Taking top 8 variants by coverage in window 9:120090158-120090162
2012-10-07 19:09:06,953 - DEBUG - Taking top 8 variants by coverage in window 9:120092375-120092376
2012-10-07 19:09:07,709 - DEBUG - Taking top 8 variants by coverage in window 9:120095750-120095751
2012-10-07 19:09:08,041 - DEBUG - Taking top 8 variants by coverage in window 9:120097926-120097927
2012-10-07 19:09:08,251 - DEBUG - Taking top 8 variants by coverage in window 9:120098913-120098914
2012-10-07 19:09:08,510 - DEBUG - Taking top 8 variants by coverage in window 9:120100390-120100391
2012-10-07 19:09:09,212 - DEBUG - Taking top 8 variants by coverage in window 9:120103711-120103712
2012-10-07 19:09:09,246 - DEBUG - Taking top 8 variants by coverage in window 9:120103735-120103750
2012-10-07 19:09:09,346 - DEBUG - Taking top 8 variants by coverage in window 9:120103781-120103783
2012-10-07 19:09:09,656 - DEBUG - Taking top 8 variants by coverage in window 9:120105127-120105128
2012-10-07 19:09:09,937 - DEBUG - Taking top 8 variants by coverage in window 9:120107194-120107201
2012-10-07 19:09:09,956 - DEBUG - Taking top 8 variants by coverage in window 9:120107202-120107205
2012-10-07 19:09:10,032 - DEBUG - Taking top 8 variants by coverage in window 9:120107228-120107230
2012-10-07 19:09:11,021 - DEBUG - Taking top 8 variants by coverage in window 9:120115794-120115795
2012-10-07 19:09:11,616 - DEBUG - Taking top 8 variants by coverage in window 9:120118438-120118439
2012-10-07 19:09:11,712 - DEBUG - Taking top 8 variants by coverage in window 9:120118444-120118445
2012-10-07 19:09:11,861 - DEBUG - Taking top 8 variants by coverage in window 9:120118459-120118460
2012-10-07 19:09:12,542 - DEBUG - Taking top 8 variants by coverage in window 9:120118720-120118721
2012-10-07 19:09:13,136 - DEBUG - Taking top 8 variants by coverage in window 9:120122526-120122530
2012-10-07 19:09:13,817 - DEBUG - Taking top 8 variants by coverage in window 9:120126774-120126775
2012-10-07 19:09:13,829 - DEBUG - Taking top 8 variants by coverage in window 9:120126775-120126776
2012-10-07 19:09:14,845 - DEBUG - Taking top 8 variants by coverage in window 9:120128545-120128546
2012-10-07 19:09:15,211 - DEBUG - Taking top 8 variants by coverage in window 9:120129604-120129605
2012-10-07 19:09:16,867 - DEBUG - Taking top 8 variants by coverage in window 9:120143432-120143437
2012-10-07 19:09:17,916 - DEBUG - Taking top 8 variants by coverage in window 9:120148402-120148419
2012-10-07 19:09:19,235 - DEBUG - Taking top 8 variants by coverage in window 9:120161854-120161855
2012-10-07 19:09:19,640 - DEBUG - Taking top 8 variants by coverage in window 9:120164263-120164264
2012-10-07 19:09:19,678 - DEBUG - Taking top 8 variants by coverage in window 9:120164363-120164364
2012-10-07 19:09:19,830 - DEBUG - Taking top 8 variants by coverage in window 9:120165577-120165585
2012-10-07 19:09:20,479 - DEBUG - Taking top 8 variants by coverage in window 9:120167643-120167644
2012-10-07 19:09:20,826 - DEBUG - Taking top 8 variants by coverage in window 9:120167996-120167997
2012-10-07 19:09:20,916 - DEBUG - Taking top 8 variants by coverage in window 9:120168183-120168184
2012-10-07 19:09:21,111 - DEBUG - Taking top 8 variants by coverage in window 9:120169526-120169527
2012-10-07 19:09:22,000 - DEBUG - Taking top 8 variants by coverage in window 9:120181820-120181825
2012-10-07 19:09:22,448 - DEBUG - Taking top 8 variants by coverage in window 9:120183649-120183652
2012-10-07 19:09:22,599 - DEBUG - Taking top 8 variants by coverage in window 9:120184075-120184076
2012-10-07 19:09:22,617 - DEBUG - Taking top 8 variants by coverage in window 9:120184076-120184077
2012-10-07 19:09:22,967 - DEBUG - Taking top 8 variants by coverage in window 9:120186295-120186296
2012-10-07 19:09:22,983 - DEBUG - Taking top 8 variants by coverage in window 9:120186311-120186312
2012-10-07 19:09:23,547 - DEBUG - Taking top 8 variants by coverage in window 9:120187028-120187029
2012-10-07 19:09:24,677 - DEBUG - Taking top 8 variants by coverage in window 9:120195542-120195543
2012-10-07 19:09:25,906 - DEBUG - Taking top 8 variants by coverage in window 9:120197720-120197721
2012-10-07 19:09:26,091 - DEBUG - Taking top 8 variants by coverage in window 9:120198629-120198630
2012-10-07 19:09:26,477 - DEBUG - Taking top 8 variants by coverage in window 9:120200305-120200306
2012-10-07 19:09:26,924 - DEBUG - Taking top 8 variants by coverage in window 9:120203445-120203446
2012-10-07 19:09:27,099 - DEBUG - Taking top 8 variants by coverage in window 9:120203619-120203626
2012-10-07 19:09:27,388 - DEBUG - Taking top 8 variants by coverage in window 9:120206168-120206170
2012-10-07 19:09:27,697 - DEBUG - Taking top 8 variants by coverage in window 9:120209090-120209091
2012-10-07 19:09:27,719 - DEBUG - Taking top 8 variants by coverage in window 9:120209133-120209135
2012-10-07 19:09:27,808 - DEBUG - Taking top 8 variants by coverage in window 9:120209447-120209448
2012-10-07 19:09:28,311 - DEBUG - Taking top 8 variants by coverage in window 9:120214508-120214511
2012-10-07 19:09:28,830 - DEBUG - Taking top 8 variants by coverage in window 9:120218956-120218957
2012-10-07 19:09:29,099 - DEBUG - Taking top 8 variants by coverage in window 9:120220945-120220946
2012-10-07 19:09:29,119 - DEBUG - Taking top 8 variants by coverage in window 9:120220966-120220967
2012-10-07 19:09:29,168 - DEBUG - Taking top 8 variants by coverage in window 9:120221036-120221050
2012-10-07 19:09:29,413 - DEBUG - Taking top 8 variants by coverage in window 9:120222884-120222900
2012-10-07 19:09:29,797 - DEBUG - Taking top 8 variants by coverage in window 9:120226135-120226136
2012-10-07 19:09:30,161 - DEBUG - Taking top 8 variants by coverage in window 9:120228516-120228517
2012-10-07 19:09:30,932 - DEBUG - Taking top 8 variants by coverage in window 9:120237256-120237257
2012-10-07 19:09:30,941 - DEBUG - Taking top 8 variants by coverage in window 9:120237263-120237264
2012-10-07 19:09:31,135 - DEBUG - Taking top 8 variants by coverage in window 9:120238946-120238947
2012-10-07 19:09:31,508 - DEBUG - Taking top 8 variants by coverage in window 9:120243255-120243256
2012-10-07 19:09:32,100 - DEBUG - Taking top 8 variants by coverage in window 9:120248401-120248402
2012-10-07 19:09:32,269 - DEBUG - Taking top 8 variants by coverage in window 9:120248416-120248418
2012-10-07 19:09:32,581 - DEBUG - Taking top 8 variants by coverage in window 9:120248600-120248601
2012-10-07 19:09:32,680 - DEBUG - Taking top 8 variants by coverage in window 9:120248749-120248750
2012-10-07 19:09:32,731 - DEBUG - Taking top 8 variants by coverage in window 9:120248766-120248767
2012-10-07 19:09:33,102 - DEBUG - Taking top 8 variants by coverage in window 9:120251174-120251175
2012-10-07 19:09:33,475 - DEBUG - Taking top 8 variants by coverage in window 9:120253745-120253749
2012-10-07 19:09:34,142 - DEBUG - Taking top 8 variants by coverage in window 9:120257946-120257947
2012-10-07 19:09:34,172 - DEBUG - Taking top 8 variants by coverage in window 9:120257975-120257976
2012-10-07 19:09:34,365 - DEBUG - Taking top 8 variants by coverage in window 9:120259076-120259077
2012-10-07 19:09:34,429 - DEBUG - Taking top 8 variants by coverage in window 9:120259264-120259265
2012-10-07 19:09:34,669 - DEBUG - Taking top 8 variants by coverage in window 9:120261312-120261322
2012-10-07 19:09:36,473 - DEBUG - Taking top 8 variants by coverage in window 9:120271109-120271113
2012-10-07 19:09:36,866 - DEBUG - Taking top 8 variants by coverage in window 9:120274000-120274002
2012-10-07 19:09:37,047 - DEBUG - Taking top 8 variants by coverage in window 9:120275203-120275204
2012-10-07 19:09:37,149 - DEBUG - Taking top 8 variants by coverage in window 9:120275360-120275361
2012-10-07 19:09:37,202 - DEBUG - Taking top 8 variants by coverage in window 9:120275430-120275436
2012-10-07 19:09:38,178 - DEBUG - Taking top 8 variants by coverage in window 9:120278239-120278240
2012-10-07 19:09:39,766 - DEBUG - Taking top 8 variants by coverage in window 9:120288156-120288160
2012-10-07 19:09:40,055 - DEBUG - Taking top 8 variants by coverage in window 9:120290310-120290312
2012-10-07 19:09:40,164 - DEBUG - Taking top 8 variants by coverage in window 9:120290838-120290843
2012-10-07 19:09:40,193 - DEBUG - Taking top 8 variants by coverage in window 9:120290852-120290853
2012-10-07 19:09:40,302 - DEBUG - Taking top 8 variants by coverage in window 9:120291538-120291539
2012-10-07 19:09:40,698 - DEBUG - Taking top 8 variants by coverage in window 9:120294475-120294476
2012-10-07 19:09:41,038 - DEBUG - Taking top 8 variants by coverage in window 9:120296800-120296803
2012-10-07 19:09:41,912 - DEBUG - Taking top 8 variants by coverage in window 9:120298708-120298716
2012-10-07 19:09:42,235 - DEBUG - Taking top 8 variants by coverage in window 9:120300258-120300259
2012-10-07 19:09:42,433 - DEBUG - Taking top 8 variants by coverage in window 9:120301893-120301894
2012-10-07 19:09:43,118 - DEBUG - Taking top 8 variants by coverage in window 9:120305287-120305288
2012-10-07 19:09:43,617 - DEBUG - Taking top 8 variants by coverage in window 9:120310078-120310079
2012-10-07 19:09:44,273 - DEBUG - Taking top 8 variants by coverage in window 9:120314362-120314365
2012-10-07 19:09:45,642 - DEBUG - Taking top 8 variants by coverage in window 9:120321847-120321848
2012-10-07 19:09:45,812 - DEBUG - Taking top 8 variants by coverage in window 9:120321940-120321944
2012-10-07 19:09:46,027 - DEBUG - Taking top 8 variants by coverage in window 9:120322834-120322835
2012-10-07 19:09:46,039 - DEBUG - Taking top 8 variants by coverage in window 9:120322860-120322861
2012-10-07 19:09:46,455 - DEBUG - Taking top 8 variants by coverage in window 9:120328016-120328017
2012-10-07 19:09:46,632 - DEBUG - Taking top 8 variants by coverage in window 9:120329237-120329238
2012-10-07 19:09:46,852 - DEBUG - Taking top 8 variants by coverage in window 9:120329533-120329537
2012-10-07 19:09:47,100 - DEBUG - Taking top 8 variants by coverage in window 9:120329653-120329657
2012-10-07 19:09:47,448 - DEBUG - Taking top 8 variants by coverage in window 9:120330688-120330689
2012-10-07 19:09:47,991 - DEBUG - Taking top 8 variants by coverage in window 9:120334112-120334118
2012-10-07 19:09:49,631 - DEBUG - Taking top 8 variants by coverage in window 9:120340266-120340267
2012-10-07 19:09:49,720 - DEBUG - Taking top 8 variants by coverage in window 9:120340671-120340672
2012-10-07 19:09:49,738 - DEBUG - Taking top 8 variants by coverage in window 9:120340680-120340681
2012-10-07 19:09:49,927 - DEBUG - Taking top 8 variants by coverage in window 9:120342595-120342596
2012-10-07 19:09:50,173 - DEBUG - Taking top 8 variants by coverage in window 9:120344722-120344733
2012-10-07 19:09:50,304 - DEBUG - Taking top 8 variants by coverage in window 9:120345866-120345868
2012-10-07 19:09:50,621 - DEBUG - Taking top 8 variants by coverage in window 9:120349362-120349363
2012-10-07 19:09:50,979 - DEBUG - Taking top 8 variants by coverage in window 9:120352458-120352459
2012-10-07 19:09:51,431 - DEBUG - Taking top 8 variants by coverage in window 9:120355984-120355986
2012-10-07 19:09:51,724 - DEBUG - Taking top 8 variants by coverage in window 9:120357745-120357746
2012-10-07 19:09:51,965 - DEBUG - Taking top 8 variants by coverage in window 9:120359669-120359674
2012-10-07 19:09:52,321 - DEBUG - Taking top 8 variants by coverage in window 9:120362120-120362121
2012-10-07 19:09:52,488 - DEBUG - Taking top 8 variants by coverage in window 9:120362346-120362347
2012-10-07 19:09:53,660 - DEBUG - Taking top 8 variants by coverage in window 9:120367477-120367482
2012-10-07 19:09:53,695 - DEBUG - Taking top 8 variants by coverage in window 9:120367484-120367491
2012-10-07 19:09:54,354 - DEBUG - Taking top 8 variants by coverage in window 9:120367507-120367508
2012-10-07 19:09:54,453 - DEBUG - Taking top 8 variants by coverage in window 9:120367513-120367514
2012-10-07 19:09:54,883 - DEBUG - Taking top 8 variants by coverage in window 9:120368708-120368734
2012-10-07 19:09:54,980 - DEBUG - Taking top 8 variants by coverage in window 9:120369062-120369063
2012-10-07 19:09:56,382 - DEBUG - Taking top 8 variants by coverage in window 9:120377502-120377503
2012-10-07 19:09:57,200 - DEBUG - Taking top 8 variants by coverage in window 9:120379661-120379662
2012-10-07 19:09:57,392 - DEBUG - Taking top 8 variants by coverage in window 9:120379916-120379919
2012-10-07 19:09:58,038 - DEBUG - Taking top 8 variants by coverage in window 9:120385419-120385421
2012-10-07 19:09:58,938 - DEBUG - Taking top 8 variants by coverage in window 9:120387035-120387043
2012-10-07 19:09:59,437 - DEBUG - Taking top 8 variants by coverage in window 9:120390656-120390657
2012-10-07 19:09:59,653 - DEBUG - Taking top 8 variants by coverage in window 9:120391318-120391319
2012-10-07 19:09:59,811 - DEBUG - Taking top 8 variants by coverage in window 9:120392619-120392625
2012-10-07 19:10:01,071 - DEBUG - Taking top 8 variants by coverage in window 9:120406346-120406347
2012-10-07 19:10:01,394 - DEBUG - Taking top 8 variants by coverage in window 9:120408006-120408010
2012-10-07 19:10:01,721 - DEBUG - Taking top 8 variants by coverage in window 9:120409999-120410000
2012-10-07 19:10:02,507 - DEBUG - Taking top 8 variants by coverage in window 9:120415440-120415442
2012-10-07 19:10:02,530 - DEBUG - Taking top 8 variants by coverage in window 9:120415456-120415458
2012-10-07 19:10:03,826 - DEBUG - Taking top 8 variants by coverage in window 9:120420688-120420692
2012-10-07 19:10:04,283 - DEBUG - Taking top 8 variants by coverage in window 9:120423940-120423941
2012-10-07 19:10:04,375 - DEBUG - Taking top 8 variants by coverage in window 9:120424605-120424618
2012-10-07 19:10:04,600 - DEBUG - Taking top 8 variants by coverage in window 9:120427123-120427126
2012-10-07 19:10:04,898 - DEBUG - Taking top 8 variants by coverage in window 9:120429727-120429728
2012-10-07 19:10:05,370 - DEBUG - Taking top 8 variants by coverage in window 9:120432768-120432769
2012-10-07 19:10:05,718 - DEBUG - Taking top 8 variants by coverage in window 9:120435666-120435669
2012-10-07 19:10:05,889 - DEBUG - Taking top 8 variants by coverage in window 9:120435981-120435982
2012-10-07 19:10:06,014 - DEBUG - Taking top 8 variants by coverage in window 9:120436648-120436650
2012-10-07 19:10:06,310 - DEBUG - Taking top 8 variants by coverage in window 9:120439149-120439150
2012-10-07 19:10:06,637 - DEBUG - Taking top 8 variants by coverage in window 9:120443616-120443617
2012-10-07 19:10:06,903 - DEBUG - Taking top 8 variants by coverage in window 9:120446602-120446604
2012-10-07 19:10:07,487 - DEBUG - Taking top 8 variants by coverage in window 9:120450249-120450257
2012-10-07 19:10:07,584 - DEBUG - Taking top 8 variants by coverage in window 9:120450350-120450362
2012-10-07 19:10:07,805 - DEBUG - Taking top 8 variants by coverage in window 9:120452972-120452973
2012-10-07 19:10:08,422 - DEBUG - Taking top 8 variants by coverage in window 9:120458606-120458613
2012-10-07 19:10:08,450 - DEBUG - Taking top 8 variants by coverage in window 9:120458651-120458652
2012-10-07 19:10:08,896 - DEBUG - Taking top 8 variants by coverage in window 9:120462143-120462163
2012-10-07 19:10:09,188 - DEBUG - Taking top 8 variants by coverage in window 9:120465440-120465441
2012-10-07 19:10:09,208 - DEBUG - Taking top 8 variants by coverage in window 9:120465588-120465615
2012-10-07 19:10:10,181 - DEBUG - Taking top 8 variants by coverage in window 9:120474116-120474118
2012-10-07 19:10:11,320 - DEBUG - Taking top 8 variants by coverage in window 9:120485387-120485388
2012-10-07 19:10:11,339 - DEBUG - Taking top 8 variants by coverage in window 9:120485395-120485396
2012-10-07 19:10:11,705 - DEBUG - Taking top 8 variants by coverage in window 9:120487117-120487119
2012-10-07 19:10:12,533 - DEBUG - Taking top 8 variants by coverage in window 9:120492423-120492424
2012-10-07 19:10:12,543 - DEBUG - Taking top 8 variants by coverage in window 9:120492424-120492425
2012-10-07 19:10:14,058 - DEBUG - Taking top 8 variants by coverage in window 9:120502315-120502316
2012-10-07 19:10:14,075 - DEBUG - Taking top 8 variants by coverage in window 9:120502316-120502319
2012-10-07 19:10:14,301 - DEBUG - Taking top 8 variants by coverage in window 9:120503222-120503232
2012-10-07 19:10:14,404 - DEBUG - Taking top 8 variants by coverage in window 9:120504392-120504393
2012-10-07 19:10:15,500 - DEBUG - Taking top 8 variants by coverage in window 9:120514655-120514656
2012-10-07 19:10:16,313 - DEBUG - Taking top 8 variants by coverage in window 9:120520681-120520682
2012-10-07 19:10:16,338 - DEBUG - Taking top 8 variants by coverage in window 9:120520697-120520698
2012-10-07 19:10:16,953 - DEBUG - Taking top 8 variants by coverage in window 9:120523466-120523473
2012-10-07 19:10:17,058 - DEBUG - Taking top 8 variants by coverage in window 9:120523734-120523735
2012-10-07 19:10:17,126 - DEBUG - Taking top 8 variants by coverage in window 9:120524189-120524190
2012-10-07 19:10:17,444 - DEBUG - Taking top 8 variants by coverage in window 9:120525192-120525193
2012-10-07 19:10:17,470 - DEBUG - Taking top 8 variants by coverage in window 9:120525193-120525194
2012-10-07 19:10:17,623 - DEBUG - Taking top 8 variants by coverage in window 9:120525275-120525276
2012-10-07 19:10:18,008 - DEBUG - Taking top 8 variants by coverage in window 9:120531107-120531110
2012-10-07 19:10:18,058 - DEBUG - Taking top 8 variants by coverage in window 9:120531310-120531311
2012-10-07 19:10:18,891 - DEBUG - Taking top 8 variants by coverage in window 9:120543097-120543098
2012-10-07 19:10:19,058 - DEBUG - Taking top 8 variants by coverage in window 9:120550958-120550959
2012-10-07 19:10:19,464 - DEBUG - Taking top 8 variants by coverage in window 9:120555118-120555119
2012-10-07 19:10:19,521 - DEBUG - Taking top 8 variants by coverage in window 9:120555124-120555125
2012-10-07 19:10:19,541 - DEBUG - Taking top 8 variants by coverage in window 9:120555126-120555127
2012-10-07 19:10:19,632 - DEBUG - Taking top 8 variants by coverage in window 9:120555140-120555141
2012-10-07 19:10:19,654 - DEBUG - Taking top 8 variants by coverage in window 9:120555158-120555159
2012-10-07 19:10:20,000 - DEBUG - Taking top 8 variants by coverage in window 9:120556266-120556267
2012-10-07 19:10:20,239 - DEBUG - Taking top 8 variants by coverage in window 9:120557997-120558000
2012-10-07 19:10:21,508 - DEBUG - Taking top 8 variants by coverage in window 9:120569759-120569760
2012-10-07 19:10:22,051 - DEBUG - Taking top 8 variants by coverage in window 9:120574153-120574157
2012-10-07 19:10:22,279 - DEBUG - Taking top 8 variants by coverage in window 9:120574176-120574177
2012-10-07 19:10:23,287 - DEBUG - Taking top 8 variants by coverage in window 9:120577923-120577924
2012-10-07 19:10:23,336 - DEBUG - Taking top 8 variants by coverage in window 9:120578287-120578289
2012-10-07 19:10:23,426 - DEBUG - Taking top 8 variants by coverage in window 9:120578637-120578642
2012-10-07 19:10:23,557 - DEBUG - Taking top 8 variants by coverage in window 9:120579492-120579493
2012-10-07 19:10:23,566 - DEBUG - Taking top 8 variants by coverage in window 9:120579494-120579495
2012-10-07 19:10:24,155 - DEBUG - Taking top 8 variants by coverage in window 9:120586565-120586566
2012-10-07 19:10:24,464 - DEBUG - Taking top 8 variants by coverage in window 9:120590141-120590142
2012-10-07 19:10:25,029 - DEBUG - Taking top 8 variants by coverage in window 9:120595972-120595977
2012-10-07 19:10:25,479 - DEBUG - Taking top 8 variants by coverage in window 9:120600293-120600296
2012-10-07 19:10:25,774 - DEBUG - Taking top 8 variants by coverage in window 9:120602529-120602530
2012-10-07 19:10:25,855 - DEBUG - Taking top 8 variants by coverage in window 9:120603138-120603139
2012-10-07 19:10:26,960 - DEBUG - Taking top 8 variants by coverage in window 9:120610593-120610598
2012-10-07 19:10:26,998 - DEBUG - Taking top 8 variants by coverage in window 9:120610614-120610615
2012-10-07 19:10:27,804 - DEBUG - Taking top 8 variants by coverage in window 9:120616396-120616397
2012-10-07 19:10:27,932 - DEBUG - Taking top 8 variants by coverage in window 9:120616701-120616704
2012-10-07 19:10:28,902 - DEBUG - Taking top 8 variants by coverage in window 9:120625678-120625679
2012-10-07 19:10:28,979 - DEBUG - Taking top 8 variants by coverage in window 9:120625707-120625708
2012-10-07 19:10:29,543 - DEBUG - Taking top 8 variants by coverage in window 9:120632184-120632185
2012-10-07 19:10:30,440 - DEBUG - Taking top 8 variants by coverage in window 9:120639733-120639748
2012-10-07 19:10:31,159 - DEBUG - Taking top 8 variants by coverage in window 9:120644985-120644986
2012-10-07 19:10:31,524 - DEBUG - Taking top 8 variants by coverage in window 9:120645007-120645009
2012-10-07 19:10:31,694 - DEBUG - Taking top 8 variants by coverage in window 9:120645496-120645497
2012-10-07 19:10:31,718 - DEBUG - Taking top 8 variants by coverage in window 9:120645518-120645519
2012-10-07 19:10:31,743 - DEBUG - Taking top 8 variants by coverage in window 9:120645655-120645656
2012-10-07 19:10:32,553 - DEBUG - Taking top 8 variants by coverage in window 9:120651860-120651866
2012-10-07 19:10:32,725 - DEBUG - Taking top 8 variants by coverage in window 9:120651895-120651904
2012-10-07 19:10:34,605 - DEBUG - Taking top 8 variants by coverage in window 9:120655642-120655643
2012-10-07 19:10:35,213 - DEBUG - Taking top 8 variants by coverage in window 9:120659593-120659594
2012-10-07 19:10:35,621 - DEBUG - Taking top 8 variants by coverage in window 9:120662037-120662038
2012-10-07 19:10:35,957 - DEBUG - Taking top 8 variants by coverage in window 9:120663574-120663587
2012-10-07 19:10:36,260 - DEBUG - Taking top 8 variants by coverage in window 9:120665050-120665053
2012-10-07 19:10:36,933 - DEBUG - Taking top 8 variants by coverage in window 9:120670187-120670188
2012-10-07 19:10:37,016 - DEBUG - Taking top 8 variants by coverage in window 9:120671233-120671234
2012-10-07 19:10:37,133 - DEBUG - Taking top 8 variants by coverage in window 9:120673180-120673181
2012-10-07 19:10:37,578 - DEBUG - Taking top 8 variants by coverage in window 9:120676763-120676765
2012-10-07 19:10:38,067 - DEBUG - Taking top 8 variants by coverage in window 9:120681424-120681425
2012-10-07 19:10:38,368 - DEBUG - Taking top 8 variants by coverage in window 9:120682955-120682959
2012-10-07 19:10:38,823 - DEBUG - Taking top 8 variants by coverage in window 9:120683181-120683185
2012-10-07 19:10:38,848 - DEBUG - Taking top 8 variants by coverage in window 9:120683197-120683198
2012-10-07 19:10:38,880 - DEBUG - Taking top 8 variants by coverage in window 9:120683508-120683509
2012-10-07 19:10:39,305 - DEBUG - Taking top 8 variants by coverage in window 9:120686918-120686936
2012-10-07 19:10:40,536 - DEBUG - Taking top 8 variants by coverage in window 9:120697152-120697155
2012-10-07 19:10:40,632 - DEBUG - Taking top 8 variants by coverage in window 9:120697174-120697175
2012-10-07 19:10:40,776 - DEBUG - Taking top 8 variants by coverage in window 9:120698085-120698086
2012-10-07 19:10:42,277 - DEBUG - Taking top 8 variants by coverage in window 9:120716400-120716401
2012-10-07 19:10:43,498 - DEBUG - Taking top 8 variants by coverage in window 9:120725625-120725626
2012-10-07 19:10:43,807 - DEBUG - Taking top 8 variants by coverage in window 9:120728317-120728319
2012-10-07 19:10:44,184 - DEBUG - Taking top 8 variants by coverage in window 9:120731796-120731797
2012-10-07 19:10:44,216 - DEBUG - Taking top 8 variants by coverage in window 9:120731825-120731826
2012-10-07 19:10:44,676 - DEBUG - Taking top 8 variants by coverage in window 9:120734817-120734818
2012-10-07 19:10:44,804 - DEBUG - Taking top 8 variants by coverage in window 9:120735752-120735778
2012-10-07 19:10:44,840 - DEBUG - Taking top 8 variants by coverage in window 9:120735812-120735813
2012-10-07 19:10:44,852 - DEBUG - Taking top 8 variants by coverage in window 9:120735976-120735977
2012-10-07 19:10:45,185 - DEBUG - Taking top 8 variants by coverage in window 9:120737778-120737779
2012-10-07 19:10:45,966 - DEBUG - Taking top 8 variants by coverage in window 9:120740305-120740307
2012-10-07 19:10:46,205 - DEBUG - Taking top 8 variants by coverage in window 9:120742182-120742183
2012-10-07 19:10:46,654 - DEBUG - Taking top 8 variants by coverage in window 9:120746084-120746085
2012-10-07 19:10:46,996 - DEBUG - Taking top 8 variants by coverage in window 9:120748780-120748782
2012-10-07 19:10:47,730 - DEBUG - Taking top 8 variants by coverage in window 9:120753937-120753938
2012-10-07 19:10:47,756 - DEBUG - Taking top 8 variants by coverage in window 9:120754119-120754120
2012-10-07 19:10:47,994 - DEBUG - Taking top 8 variants by coverage in window 9:120755706-120755707
2012-10-07 19:10:48,671 - DEBUG - Taking top 8 variants by coverage in window 9:120761056-120761060
2012-10-07 19:10:49,002 - DEBUG - Taking top 8 variants by coverage in window 9:120764436-120764437
2012-10-07 19:10:49,512 - DEBUG - Taking top 8 variants by coverage in window 9:120769757-120769758
2012-10-07 19:10:49,731 - DEBUG - Taking top 8 variants by coverage in window 9:120772293-120772294
2012-10-07 19:10:50,046 - DEBUG - Taking top 8 variants by coverage in window 9:120774099-120774108
2012-10-07 19:10:50,329 - DEBUG - Taking top 8 variants by coverage in window 9:120775256-120775258
2012-10-07 19:10:50,338 - DEBUG - Taking top 8 variants by coverage in window 9:120775259-120775260
2012-10-07 19:10:50,559 - DEBUG - Taking top 8 variants by coverage in window 9:120776288-120776289
2012-10-07 19:10:51,212 - DEBUG - Taking top 8 variants by coverage in window 9:120778244-120778253
2012-10-07 19:10:51,853 - DEBUG - Taking top 8 variants by coverage in window 9:120786214-120786215
2012-10-07 19:10:52,053 - DEBUG - Taking top 8 variants by coverage in window 9:120786989-120786990
2012-10-07 19:10:52,248 - DEBUG - Taking top 8 variants by coverage in window 9:120787926-120787928
2012-10-07 19:10:52,806 - DEBUG - Taking top 8 variants by coverage in window 9:120790668-120790669
2012-10-07 19:10:53,871 - DEBUG - Taking top 8 variants by coverage in window 9:120801284-120801285
2012-10-07 19:10:55,535 - DEBUG - Taking top 8 variants by coverage in window 9:120817536-120817537
2012-10-07 19:10:55,757 - DEBUG - Taking top 8 variants by coverage in window 9:120819445-120819448
2012-10-07 19:10:55,778 - DEBUG - Taking top 8 variants by coverage in window 9:120819462-120819466
2012-10-07 19:10:57,259 - DEBUG - Taking top 8 variants by coverage in window 9:120836693-120836694
2012-10-07 19:10:57,413 - DEBUG - Taking top 8 variants by coverage in window 9:120840393-120840394
2012-10-07 19:10:57,650 - DEBUG - Taking top 8 variants by coverage in window 9:120846433-120846438
2012-10-07 19:10:58,330 - DEBUG - Taking top 8 variants by coverage in window 9:120856577-120856582
2012-10-07 19:10:58,474 - DEBUG - Taking top 8 variants by coverage in window 9:120856601-120856603
2012-10-07 19:10:59,157 - DEBUG - Taking top 8 variants by coverage in window 9:120871435-120871436
2012-10-07 19:10:59,637 - DEBUG - Taking top 8 variants by coverage in window 9:120876438-120876439
2012-10-07 19:10:59,858 - DEBUG - Taking top 8 variants by coverage in window 9:120876650-120876653
2012-10-07 19:11:01,452 - DEBUG - Taking top 8 variants by coverage in window 9:120893465-120893466
2012-10-07 19:11:01,469 - DEBUG - Taking top 8 variants by coverage in window 9:120893488-120893489
2012-10-07 19:11:01,480 - DEBUG - Taking top 8 variants by coverage in window 9:120893489-120893490
2012-10-07 19:11:01,520 - DEBUG - Taking top 8 variants by coverage in window 9:120893612-120893613
2012-10-07 19:11:01,817 - DEBUG - Taking top 8 variants by coverage in window 9:120895052-120895053
2012-10-07 19:11:01,830 - DEBUG - Taking top 8 variants by coverage in window 9:120895053-120895054
2012-10-07 19:11:02,353 - DEBUG - Taking top 8 variants by coverage in window 9:120898914-120898915
2012-10-07 19:11:02,373 - DEBUG - Taking top 8 variants by coverage in window 9:120898916-120898917
2012-10-07 19:11:02,710 - DEBUG - Taking top 8 variants by coverage in window 9:120902431-120902432
2012-10-07 19:11:03,054 - DEBUG - Taking top 8 variants by coverage in window 9:120904610-120904613
2012-10-07 19:11:04,288 - DEBUG - Taking top 8 variants by coverage in window 9:120915514-120915517
2012-10-07 19:11:04,358 - DEBUG - Taking top 8 variants by coverage in window 9:120915755-120915756
2012-10-07 19:11:04,377 - DEBUG - Taking top 8 variants by coverage in window 9:120915804-120915805
2012-10-07 19:11:05,154 - DEBUG - Taking top 8 variants by coverage in window 9:120924163-120924164
2012-10-07 19:11:05,239 - DEBUG - Taking top 8 variants by coverage in window 9:120924731-120924732
2012-10-07 19:11:05,324 - DEBUG - Taking top 8 variants by coverage in window 9:120925430-120925431
2012-10-07 19:11:06,144 - DEBUG - Taking top 8 variants by coverage in window 9:120932668-120932669
2012-10-07 19:11:06,165 - DEBUG - Taking top 8 variants by coverage in window 9:120932670-120932671
2012-10-07 19:11:06,290 - DEBUG - Taking top 8 variants by coverage in window 9:120933798-120933799
2012-10-07 19:11:06,328 - DEBUG - Taking top 8 variants by coverage in window 9:120938590-120938591
2012-10-07 19:11:07,041 - DEBUG - Taking top 8 variants by coverage in window 9:120942146-120942147
2012-10-07 19:11:07,078 - DEBUG - Taking top 8 variants by coverage in window 9:120942200-120942201
2012-10-07 19:11:07,380 - DEBUG - Taking top 8 variants by coverage in window 9:120944804-120944805
2012-10-07 19:11:07,750 - DEBUG - Taking top 8 variants by coverage in window 9:120949524-120949525
2012-10-07 19:11:07,832 - DEBUG - Taking top 8 variants by coverage in window 9:120949620-120949621
2012-10-07 19:11:08,202 - DEBUG - Taking top 8 variants by coverage in window 9:120954748-120954754
2012-10-07 19:11:09,116 - DEBUG - Taking top 8 variants by coverage in window 9:120963074-120963075
2012-10-07 19:11:09,272 - DEBUG - Taking top 8 variants by coverage in window 9:120963132-120963136
2012-10-07 19:11:09,811 - DEBUG - Taking top 8 variants by coverage in window 9:120969897-120969898
2012-10-07 19:11:10,845 - DEBUG - Taking top 8 variants by coverage in window 9:120984498-120984499
2012-10-07 19:11:10,884 - DEBUG - Taking top 8 variants by coverage in window 9:120984507-120984508
2012-10-07 19:11:11,544 - DEBUG - Taking top 8 variants by coverage in window 9:120993677-120993682
2012-10-07 19:11:11,555 - DEBUG - Taking top 8 variants by coverage in window 9:120993684-120993688
2012-10-07 19:11:13,180 - DEBUG - Read 107825 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 19:11:13,472 - DEBUG - Read 120871 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 19:11:13,767 - DEBUG - Read 133817 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 19:11:14,181 - DEBUG - Read 141406 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 19:11:14,497 - DEBUG - Read 126353 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 19:11:14,784 - DEBUG - Read 122994 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 19:11:15,081 - DEBUG - Read 129977 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 19:11:15,386 - DEBUG - Read 123470 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 19:11:15,665 - DEBUG - Read 116394 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 19:11:15,936 - DEBUG - Read 108992 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 19:11:16,241 - DEBUG - Read 127088 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 19:11:16,517 - DEBUG - Read 118029 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 19:11:16,805 - DEBUG - Read 119265 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 19:11:17,090 - DEBUG - Read 130080 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 19:11:17,406 - DEBUG - Read 140537 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 19:11:17,673 - DEBUG - Read 107771 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 19:11:17,967 - DEBUG - Read 132407 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 19:11:18,262 - DEBUG - Read 122104 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 19:11:18,529 - DEBUG - Read 117117 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 19:11:18,794 - DEBUG - Read 104672 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 19:11:18,916 - DEBUG - Detected 28349 variants in 107825 reads
2012-10-07 19:11:19,126 - DEBUG - Detected 42917 variants in 120871 reads
2012-10-07 19:11:19,405 - DEBUG - Detected 54413 variants in 133817 reads
2012-10-07 19:11:19,760 - DEBUG - Detected 65679 variants in 141406 reads
2012-10-07 19:11:20,123 - DEBUG - Detected 73249 variants in 126353 reads
2012-10-07 19:11:20,524 - DEBUG - Detected 80780 variants in 122994 reads
2012-10-07 19:11:20,979 - DEBUG - Detected 96582 variants in 129977 reads
2012-10-07 19:11:21,520 - DEBUG - Detected 103901 variants in 123470 reads
2012-10-07 19:11:22,128 - DEBUG - Detected 111449 variants in 116394 reads
2012-10-07 19:11:22,728 - DEBUG - Detected 118588 variants in 108992 reads
2012-10-07 19:11:23,374 - DEBUG - Detected 125177 variants in 127088 reads
2012-10-07 19:11:24,048 - DEBUG - Detected 130179 variants in 118029 reads
2012-10-07 19:11:24,792 - DEBUG - Detected 135724 variants in 119265 reads
2012-10-07 19:11:25,498 - DEBUG - Detected 141910 variants in 130080 reads
2012-10-07 19:11:26,240 - DEBUG - Detected 151360 variants in 140537 reads
2012-10-07 19:11:26,993 - DEBUG - Detected 156315 variants in 107771 reads
2012-10-07 19:11:27,845 - DEBUG - Detected 160941 variants in 132407 reads
2012-10-07 19:11:28,654 - DEBUG - Detected 166368 variants in 122104 reads
2012-10-07 19:11:29,476 - DEBUG - Detected 171690 variants in 117117 reads
2012-10-07 19:11:30,385 - DEBUG - Detected 177511 variants in 104672 reads
2012-10-07 19:11:32,787 - DEBUG - Taking top 8 variants by coverage in window 9:121014875-121014876
2012-10-07 19:11:32,982 - DEBUG - Taking top 8 variants by coverage in window 9:121017204-121017208
2012-10-07 19:11:33,012 - DEBUG - Taking top 8 variants by coverage in window 9:121017216-121017217
2012-10-07 19:11:33,020 - DEBUG - Taking top 8 variants by coverage in window 9:121017217-121017218
2012-10-07 19:11:33,120 - DEBUG - Taking top 8 variants by coverage in window 9:121017373-121017377
2012-10-07 19:11:33,295 - DEBUG - Taking top 8 variants by coverage in window 9:121018274-121018275
2012-10-07 19:11:33,334 - DEBUG - Taking top 8 variants by coverage in window 9:121018284-121018285
2012-10-07 19:11:33,417 - DEBUG - Taking top 8 variants by coverage in window 9:121018365-121018369
2012-10-07 19:11:33,477 - DEBUG - Taking top 8 variants by coverage in window 9:121018381-121018384
2012-10-07 19:11:33,519 - DEBUG - Taking top 8 variants by coverage in window 9:121018387-121018388
2012-10-07 19:11:33,695 - DEBUG - Taking top 8 variants by coverage in window 9:121018738-121018739
2012-10-07 19:11:33,804 - DEBUG - Taking top 8 variants by coverage in window 9:121019527-121019528
2012-10-07 19:11:34,547 - DEBUG - Taking top 8 variants by coverage in window 9:121025091-121025100
2012-10-07 19:11:34,589 - DEBUG - Taking top 8 variants by coverage in window 9:121025105-121025106
2012-10-07 19:11:34,759 - DEBUG - Taking top 8 variants by coverage in window 9:121026216-121026217
2012-10-07 19:11:34,953 - DEBUG - Taking top 8 variants by coverage in window 9:121027920-121027921
2012-10-07 19:11:35,278 - DEBUG - Taking top 8 variants by coverage in window 9:121030829-121030830
2012-10-07 19:11:36,248 - DEBUG - Taking top 8 variants by coverage in window 9:121037188-121037197
2012-10-07 19:11:37,216 - DEBUG - Taking top 8 variants by coverage in window 9:121041929-121041930
2012-10-07 19:11:37,412 - DEBUG - Taking top 8 variants by coverage in window 9:121042564-121042565
2012-10-07 19:11:37,431 - DEBUG - Taking top 8 variants by coverage in window 9:121042573-121042577
2012-10-07 19:11:37,573 - DEBUG - Taking top 8 variants by coverage in window 9:121043178-121043180
2012-10-07 19:11:37,622 - DEBUG - Taking top 8 variants by coverage in window 9:121043199-121043202
2012-10-07 19:11:37,656 - DEBUG - Taking top 8 variants by coverage in window 9:121043210-121043212
2012-10-07 19:11:37,950 - DEBUG - Taking top 8 variants by coverage in window 9:121044619-121044626
2012-10-07 19:11:38,076 - DEBUG - Taking top 8 variants by coverage in window 9:121046084-121046085
2012-10-07 19:11:38,314 - DEBUG - Taking top 8 variants by coverage in window 9:121049105-121049106
2012-10-07 19:11:38,350 - DEBUG - Taking top 8 variants by coverage in window 9:121049135-121049136
2012-10-07 19:11:38,474 - DEBUG - Taking top 8 variants by coverage in window 9:121050379-121050380
2012-10-07 19:11:38,642 - DEBUG - Taking top 8 variants by coverage in window 9:121051524-121051525
2012-10-07 19:11:38,656 - DEBUG - Taking top 8 variants by coverage in window 9:121051548-121051549
2012-10-07 19:11:38,669 - DEBUG - Taking top 8 variants by coverage in window 9:121051549-121051550
2012-10-07 19:11:38,931 - DEBUG - Taking top 8 variants by coverage in window 9:121054288-121054303
2012-10-07 19:11:40,513 - DEBUG - Taking top 8 variants by coverage in window 9:121060073-121060074
2012-10-07 19:11:40,853 - DEBUG - Taking top 8 variants by coverage in window 9:121062352-121062353
2012-10-07 19:11:41,266 - DEBUG - Taking top 8 variants by coverage in window 9:121064368-121064369
2012-10-07 19:11:41,282 - DEBUG - Taking top 8 variants by coverage in window 9:121064378-121064379
2012-10-07 19:11:41,312 - DEBUG - Taking top 8 variants by coverage in window 9:121064455-121064456
2012-10-07 19:11:41,580 - DEBUG - Taking top 8 variants by coverage in window 9:121066548-121066556
2012-10-07 19:11:42,198 - DEBUG - Taking top 8 variants by coverage in window 9:121070192-121070193
2012-10-07 19:11:42,285 - DEBUG - Taking top 8 variants by coverage in window 9:121070275-121070276
2012-10-07 19:11:42,397 - DEBUG - Taking top 8 variants by coverage in window 9:121071259-121071260
2012-10-07 19:11:42,463 - DEBUG - Taking top 8 variants by coverage in window 9:121071542-121071543
2012-10-07 19:11:42,524 - DEBUG - Taking top 8 variants by coverage in window 9:121071609-121071610
2012-10-07 19:11:43,474 - DEBUG - Taking top 8 variants by coverage in window 9:121079652-121079656
2012-10-07 19:11:44,238 - DEBUG - Taking top 8 variants by coverage in window 9:121083864-121083870
2012-10-07 19:11:44,285 - DEBUG - Taking top 8 variants by coverage in window 9:121083891-121083892
2012-10-07 19:11:44,600 - DEBUG - Taking top 8 variants by coverage in window 9:121093649-121093650
2012-10-07 19:11:45,576 - DEBUG - Taking top 8 variants by coverage in window 9:121100665-121100666
2012-10-07 19:11:46,326 - DEBUG - Taking top 8 variants by coverage in window 9:121107312-121107313
2012-10-07 19:11:47,065 - DEBUG - Taking top 8 variants by coverage in window 9:121112324-121112325
2012-10-07 19:11:47,152 - DEBUG - Taking top 8 variants by coverage in window 9:121112419-121112420
2012-10-07 19:11:48,166 - DEBUG - Taking top 8 variants by coverage in window 9:121120643-121120644
2012-10-07 19:11:50,243 - DEBUG - Taking top 8 variants by coverage in window 9:121152222-121152223
2012-10-07 19:11:50,904 - DEBUG - Taking top 8 variants by coverage in window 9:121158665-121158666
2012-10-07 19:11:51,254 - DEBUG - Taking top 8 variants by coverage in window 9:121159696-121159698
2012-10-07 19:11:51,415 - DEBUG - Taking top 8 variants by coverage in window 9:121159713-121159720
2012-10-07 19:11:52,290 - DEBUG - Taking top 8 variants by coverage in window 9:121159734-121159736
2012-10-07 19:11:52,343 - DEBUG - Taking top 8 variants by coverage in window 9:121159738-121159741
2012-10-07 19:11:52,524 - DEBUG - Taking top 8 variants by coverage in window 9:121159742-121159744
2012-10-07 19:11:52,642 - DEBUG - Taking top 8 variants by coverage in window 9:121159752-121159754
2012-10-07 19:11:52,710 - DEBUG - Taking top 8 variants by coverage in window 9:121159756-121159757
2012-10-07 19:11:52,801 - DEBUG - Taking top 8 variants by coverage in window 9:121159769-121159774
2012-10-07 19:11:52,838 - DEBUG - Taking top 8 variants by coverage in window 9:121159775-121159779
2012-10-07 19:11:53,120 - DEBUG - Taking top 8 variants by coverage in window 9:121160809-121160810
2012-10-07 19:11:53,782 - DEBUG - Taking top 8 variants by coverage in window 9:121167131-121167132
2012-10-07 19:11:53,819 - DEBUG - Taking top 8 variants by coverage in window 9:121167148-121167149
2012-10-07 19:11:53,853 - DEBUG - Taking top 8 variants by coverage in window 9:121167414-121167437
2012-10-07 19:11:53,895 - DEBUG - Taking top 8 variants by coverage in window 9:121167444-121167445
2012-10-07 19:11:54,321 - DEBUG - Taking top 8 variants by coverage in window 9:121169843-121169847
2012-10-07 19:11:54,637 - DEBUG - Taking top 8 variants by coverage in window 9:121173592-121173593
2012-10-07 19:11:54,702 - DEBUG - Taking top 8 variants by coverage in window 9:121173601-121173602
2012-10-07 19:11:54,746 - DEBUG - Taking top 8 variants by coverage in window 9:121173616-121173617
2012-10-07 19:11:55,920 - DEBUG - Taking top 8 variants by coverage in window 9:121184449-121184450
2012-10-07 19:11:55,975 - DEBUG - Taking top 8 variants by coverage in window 9:121184907-121184913
2012-10-07 19:11:56,343 - DEBUG - Taking top 8 variants by coverage in window 9:121187359-121187360
2012-10-07 19:11:57,035 - DEBUG - Taking top 8 variants by coverage in window 9:121191862-121191863
2012-10-07 19:11:58,024 - DEBUG - Taking top 8 variants by coverage in window 9:121200007-121200008
2012-10-07 19:11:58,165 - DEBUG - Taking top 8 variants by coverage in window 9:121200787-121200788
2012-10-07 19:11:58,175 - DEBUG - Taking top 8 variants by coverage in window 9:121200974-121200975
2012-10-07 19:11:58,660 - DEBUG - Taking top 8 variants by coverage in window 9:121205910-121205911
2012-10-07 19:11:58,682 - DEBUG - Taking top 8 variants by coverage in window 9:121205925-121205926
2012-10-07 19:11:59,271 - DEBUG - Taking top 8 variants by coverage in window 9:121215341-121215342
2012-10-07 19:11:59,722 - DEBUG - Taking top 8 variants by coverage in window 9:121219197-121219198
2012-10-07 19:12:00,207 - DEBUG - Taking top 8 variants by coverage in window 9:121224733-121224737
2012-10-07 19:12:01,207 - DEBUG - Taking top 8 variants by coverage in window 9:121231492-121231494
2012-10-07 19:12:01,230 - DEBUG - Taking top 8 variants by coverage in window 9:121231495-121231497
2012-10-07 19:12:01,348 - DEBUG - Taking top 8 variants by coverage in window 9:121237600-121237601
2012-10-07 19:12:02,167 - DEBUG - Taking top 8 variants by coverage in window 9:121242528-121242535
2012-10-07 19:12:02,384 - DEBUG - Taking top 8 variants by coverage in window 9:121244614-121244628
2012-10-07 19:12:02,697 - DEBUG - Taking top 8 variants by coverage in window 9:121247193-121247201
2012-10-07 19:12:02,836 - DEBUG - Taking top 8 variants by coverage in window 9:121249309-121249311
2012-10-07 19:12:02,985 - DEBUG - Taking top 8 variants by coverage in window 9:121250525-121250526
2012-10-07 19:12:03,208 - DEBUG - Taking top 8 variants by coverage in window 9:121252297-121252298
2012-10-07 19:12:04,304 - DEBUG - Taking top 8 variants by coverage in window 9:121260605-121260608
2012-10-07 19:12:04,916 - DEBUG - Taking top 8 variants by coverage in window 9:121264166-121264167
2012-10-07 19:12:06,004 - DEBUG - Taking top 8 variants by coverage in window 9:121272283-121272284
2012-10-07 19:12:07,194 - DEBUG - Taking top 8 variants by coverage in window 9:121275077-121275079
2012-10-07 19:12:08,019 - DEBUG - Taking top 8 variants by coverage in window 9:121281146-121281147
2012-10-07 19:12:08,181 - DEBUG - Taking top 8 variants by coverage in window 9:121281844-121281845
2012-10-07 19:12:08,238 - DEBUG - Taking top 8 variants by coverage in window 9:121282066-121282069
2012-10-07 19:12:08,390 - DEBUG - Taking top 8 variants by coverage in window 9:121282726-121282727
2012-10-07 19:12:08,647 - DEBUG - Taking top 8 variants by coverage in window 9:121283722-121283724
2012-10-07 19:12:09,094 - DEBUG - Taking top 8 variants by coverage in window 9:121284781-121284783
2012-10-07 19:12:09,228 - DEBUG - Taking top 8 variants by coverage in window 9:121284786-121284787
2012-10-07 19:12:09,479 - DEBUG - Taking top 8 variants by coverage in window 9:121284831-121284834
2012-10-07 19:12:09,514 - DEBUG - Taking top 8 variants by coverage in window 9:121284837-121284839
2012-10-07 19:12:09,573 - DEBUG - Taking top 8 variants by coverage in window 9:121284847-121284848
2012-10-07 19:12:09,633 - DEBUG - Taking top 8 variants by coverage in window 9:121284849-121284850
2012-10-07 19:12:09,683 - DEBUG - Taking top 8 variants by coverage in window 9:121284851-121284852
2012-10-07 19:12:09,766 - DEBUG - Taking top 8 variants by coverage in window 9:121284854-121284855
2012-10-07 19:12:09,847 - DEBUG - Taking top 8 variants by coverage in window 9:121284857-121284858
2012-10-07 19:12:10,168 - DEBUG - Taking top 8 variants by coverage in window 9:121284881-121284882
2012-10-07 19:12:11,012 - DEBUG - Taking top 8 variants by coverage in window 9:121289116-121289117
2012-10-07 19:12:11,836 - DEBUG - Taking top 8 variants by coverage in window 9:121295901-121295902
2012-10-07 19:12:12,692 - DEBUG - Taking top 8 variants by coverage in window 9:121299766-121299768
2012-10-07 19:12:12,943 - DEBUG - Taking top 8 variants by coverage in window 9:121301454-121301455
2012-10-07 19:12:13,095 - DEBUG - Taking top 8 variants by coverage in window 9:121302034-121302035
2012-10-07 19:12:13,796 - DEBUG - Taking top 8 variants by coverage in window 9:121306806-121306818
2012-10-07 19:12:14,587 - DEBUG - Taking top 8 variants by coverage in window 9:121312993-121312999
2012-10-07 19:12:14,623 - DEBUG - Taking top 8 variants by coverage in window 9:121313216-121313217
2012-10-07 19:12:14,957 - DEBUG - Taking top 8 variants by coverage in window 9:121323357-121323358
2012-10-07 19:12:15,130 - DEBUG - Taking top 8 variants by coverage in window 9:121325822-121325823
2012-10-07 19:12:15,824 - DEBUG - Taking top 8 variants by coverage in window 9:121328064-121328065
2012-10-07 19:12:16,282 - DEBUG - Taking top 8 variants by coverage in window 9:121331938-121331940
2012-10-07 19:12:18,026 - DEBUG - Taking top 8 variants by coverage in window 9:121343692-121343693
2012-10-07 19:12:18,137 - DEBUG - Taking top 8 variants by coverage in window 9:121344695-121344711
2012-10-07 19:12:18,221 - DEBUG - Taking top 8 variants by coverage in window 9:121345175-121345177
2012-10-07 19:12:19,212 - DEBUG - Taking top 8 variants by coverage in window 9:121349461-121349462
2012-10-07 19:12:19,653 - DEBUG - Taking top 8 variants by coverage in window 9:121353139-121353140
2012-10-07 19:12:20,257 - DEBUG - Taking top 8 variants by coverage in window 9:121356761-121356766
2012-10-07 19:12:20,348 - DEBUG - Taking top 8 variants by coverage in window 9:121356769-121356770
2012-10-07 19:12:20,472 - DEBUG - Taking top 8 variants by coverage in window 9:121356799-121356800
2012-10-07 19:12:20,551 - DEBUG - Taking top 8 variants by coverage in window 9:121356817-121356819
2012-10-07 19:12:20,685 - DEBUG - Taking top 8 variants by coverage in window 9:121356992-121356995
2012-10-07 19:12:20,729 - DEBUG - Taking top 8 variants by coverage in window 9:121357007-121357008
2012-10-07 19:12:21,501 - DEBUG - Taking top 8 variants by coverage in window 9:121364156-121364157
2012-10-07 19:12:21,714 - DEBUG - Taking top 8 variants by coverage in window 9:121366616-121366617
2012-10-07 19:12:22,172 - DEBUG - Taking top 8 variants by coverage in window 9:121370478-121370479
2012-10-07 19:12:22,291 - DEBUG - Taking top 8 variants by coverage in window 9:121371121-121371126
2012-10-07 19:12:22,410 - DEBUG - Taking top 8 variants by coverage in window 9:121371153-121371154
2012-10-07 19:12:22,778 - DEBUG - Taking top 8 variants by coverage in window 9:121373357-121373358
2012-10-07 19:12:22,820 - DEBUG - Taking top 8 variants by coverage in window 9:121373392-121373395
2012-10-07 19:12:23,144 - DEBUG - Taking top 8 variants by coverage in window 9:121374791-121374799
2012-10-07 19:12:23,244 - DEBUG - Taking top 8 variants by coverage in window 9:121374831-121374835
2012-10-07 19:12:24,270 - DEBUG - Taking top 8 variants by coverage in window 9:121387023-121387034
2012-10-07 19:12:24,586 - DEBUG - Taking top 8 variants by coverage in window 9:121389430-121389431
2012-10-07 19:12:24,618 - DEBUG - Taking top 8 variants by coverage in window 9:121389717-121389718
2012-10-07 19:12:24,921 - DEBUG - Taking top 8 variants by coverage in window 9:121391863-121391864
2012-10-07 19:12:25,502 - DEBUG - Taking top 8 variants by coverage in window 9:121394727-121394732
2012-10-07 19:12:25,733 - DEBUG - Taking top 8 variants by coverage in window 9:121394828-121394830
2012-10-07 19:12:26,002 - DEBUG - Taking top 8 variants by coverage in window 9:121394926-121394927
2012-10-07 19:12:26,121 - DEBUG - Taking top 8 variants by coverage in window 9:121394939-121394940
2012-10-07 19:12:26,236 - DEBUG - Taking top 8 variants by coverage in window 9:121394961-121394963
2012-10-07 19:12:26,378 - DEBUG - Taking top 8 variants by coverage in window 9:121394997-121394998
2012-10-07 19:12:26,430 - DEBUG - Taking top 8 variants by coverage in window 9:121395012-121395013
2012-10-07 19:12:26,823 - DEBUG - Taking top 8 variants by coverage in window 9:121398477-121398478
2012-10-07 19:12:26,962 - DEBUG - Taking top 8 variants by coverage in window 9:121399876-121399877
2012-10-07 19:12:27,022 - DEBUG - Taking top 8 variants by coverage in window 9:121400434-121400435
2012-10-07 19:12:27,549 - DEBUG - Taking top 8 variants by coverage in window 9:121407297-121407298
2012-10-07 19:12:28,174 - DEBUG - Taking top 8 variants by coverage in window 9:121413470-121413473
2012-10-07 19:12:28,248 - DEBUG - Taking top 8 variants by coverage in window 9:121413498-121413499
2012-10-07 19:12:28,435 - DEBUG - Taking top 8 variants by coverage in window 9:121414502-121414503
2012-10-07 19:12:28,534 - DEBUG - Taking top 8 variants by coverage in window 9:121414523-121414524
2012-10-07 19:12:28,571 - DEBUG - Taking top 8 variants by coverage in window 9:121414525-121414526
2012-10-07 19:12:28,720 - DEBUG - Taking top 8 variants by coverage in window 9:121416317-121416318
2012-10-07 19:12:28,834 - DEBUG - Taking top 8 variants by coverage in window 9:121416712-121416713
2012-10-07 19:12:28,897 - DEBUG - Taking top 8 variants by coverage in window 9:121417687-121417688
2012-10-07 19:12:31,443 - DEBUG - Taking top 8 variants by coverage in window 9:121441478-121441479
2012-10-07 19:12:31,757 - DEBUG - Taking top 8 variants by coverage in window 9:121445022-121445023
2012-10-07 19:12:32,136 - DEBUG - Taking top 8 variants by coverage in window 9:121448265-121448266
2012-10-07 19:12:32,839 - DEBUG - Taking top 8 variants by coverage in window 9:121454140-121454141
2012-10-07 19:12:33,232 - DEBUG - Taking top 8 variants by coverage in window 9:121457317-121457318
2012-10-07 19:12:33,487 - DEBUG - Taking top 8 variants by coverage in window 9:121460126-121460130
2012-10-07 19:12:34,646 - DEBUG - Taking top 8 variants by coverage in window 9:121471378-121471381
2012-10-07 19:12:34,715 - DEBUG - Taking top 8 variants by coverage in window 9:121471382-121471387
2012-10-07 19:12:35,166 - DEBUG - Taking top 8 variants by coverage in window 9:121475970-121475971
2012-10-07 19:12:35,553 - DEBUG - Taking top 8 variants by coverage in window 9:121479458-121479459
2012-10-07 19:12:35,875 - DEBUG - Taking top 8 variants by coverage in window 9:121479860-121479861
2012-10-07 19:12:35,943 - DEBUG - Taking top 8 variants by coverage in window 9:121479868-121479870
2012-10-07 19:12:35,973 - DEBUG - Taking top 8 variants by coverage in window 9:121479873-121479876
2012-10-07 19:12:36,066 - DEBUG - Taking top 8 variants by coverage in window 9:121479882-121479885
2012-10-07 19:12:36,721 - DEBUG - Taking top 8 variants by coverage in window 9:121483570-121483571
2012-10-07 19:12:36,736 - DEBUG - Taking top 8 variants by coverage in window 9:121483572-121483581
2012-10-07 19:12:36,921 - DEBUG - Taking top 8 variants by coverage in window 9:121484823-121484824
2012-10-07 19:12:38,363 - DEBUG - Taking top 8 variants by coverage in window 9:121496916-121496917
2012-10-07 19:12:39,319 - DEBUG - Taking top 8 variants by coverage in window 9:121503186-121503187
2012-10-07 19:12:40,127 - DEBUG - Taking top 8 variants by coverage in window 9:121507292-121507293
2012-10-07 19:12:42,035 - DEBUG - Taking top 8 variants by coverage in window 9:121525992-121525993
2012-10-07 19:12:42,743 - DEBUG - Taking top 8 variants by coverage in window 9:121530149-121530150
2012-10-07 19:12:44,294 - DEBUG - Taking top 8 variants by coverage in window 9:121542036-121542037
2012-10-07 19:12:44,489 - DEBUG - Taking top 8 variants by coverage in window 9:121544314-121544315
2012-10-07 19:12:44,604 - DEBUG - Taking top 8 variants by coverage in window 9:121545035-121545036
2012-10-07 19:12:44,774 - DEBUG - Taking top 8 variants by coverage in window 9:121546306-121546308
2012-10-07 19:12:48,794 - DEBUG - Taking top 8 variants by coverage in window 9:121589955-121589961
2012-10-07 19:12:50,138 - DEBUG - Taking top 8 variants by coverage in window 9:121595557-121595561
2012-10-07 19:12:50,234 - DEBUG - Taking top 8 variants by coverage in window 9:121595566-121595572
2012-10-07 19:12:50,512 - DEBUG - Taking top 8 variants by coverage in window 9:121595647-121595655
2012-10-07 19:12:52,708 - DEBUG - Taking top 8 variants by coverage in window 9:121603222-121603224
2012-10-07 19:12:52,726 - DEBUG - Taking top 8 variants by coverage in window 9:121603225-121603227
2012-10-07 19:12:53,350 - DEBUG - Taking top 8 variants by coverage in window 9:121603564-121603565
2012-10-07 19:12:53,614 - DEBUG - Taking top 8 variants by coverage in window 9:121605149-121605150
2012-10-07 19:12:53,824 - DEBUG - Taking top 8 variants by coverage in window 9:121606572-121606573
2012-10-07 19:12:53,838 - DEBUG - Taking top 8 variants by coverage in window 9:121606590-121606591
2012-10-07 19:12:53,916 - DEBUG - Taking top 8 variants by coverage in window 9:121607208-121607209
2012-10-07 19:12:55,276 - DEBUG - Taking top 8 variants by coverage in window 9:121623832-121623834
2012-10-07 19:12:55,434 - DEBUG - Taking top 8 variants by coverage in window 9:121625754-121625755
2012-10-07 19:12:56,004 - DEBUG - Taking top 8 variants by coverage in window 9:121634445-121634446
2012-10-07 19:12:56,645 - DEBUG - Taking top 8 variants by coverage in window 9:121651363-121651371
2012-10-07 19:12:57,542 - DEBUG - Taking top 8 variants by coverage in window 9:121673264-121673265
2012-10-07 19:12:58,362 - DEBUG - Taking top 8 variants by coverage in window 9:121682301-121682302
2012-10-07 19:12:58,387 - DEBUG - Taking top 8 variants by coverage in window 9:121682394-121682396
2012-10-07 19:12:58,486 - DEBUG - Taking top 8 variants by coverage in window 9:121682534-121682535
2012-10-07 19:12:58,700 - DEBUG - Taking top 8 variants by coverage in window 9:121683775-121683788
2012-10-07 19:12:59,824 - DEBUG - Taking top 8 variants by coverage in window 9:121694916-121694917
2012-10-07 19:13:01,571 - DEBUG - Taking top 8 variants by coverage in window 9:121712553-121712566
2012-10-07 19:13:01,684 - DEBUG - Taking top 8 variants by coverage in window 9:121713036-121713037
2012-10-07 19:13:01,711 - DEBUG - Taking top 8 variants by coverage in window 9:121713056-121713057
2012-10-07 19:13:01,933 - DEBUG - Taking top 8 variants by coverage in window 9:121713859-121713860
2012-10-07 19:13:01,957 - DEBUG - Taking top 8 variants by coverage in window 9:121713860-121713866
2012-10-07 19:13:02,356 - DEBUG - Taking top 8 variants by coverage in window 9:121715275-121715283
2012-10-07 19:13:02,756 - DEBUG - Taking top 8 variants by coverage in window 9:121716547-121716548
2012-10-07 19:13:03,586 - DEBUG - Taking top 8 variants by coverage in window 9:121718843-121718844
2012-10-07 19:13:03,773 - DEBUG - Taking top 8 variants by coverage in window 9:121719642-121719643
2012-10-07 19:13:05,330 - DEBUG - Taking top 8 variants by coverage in window 9:121733534-121733536
2012-10-07 19:13:05,379 - DEBUG - Taking top 8 variants by coverage in window 9:121733567-121733572
2012-10-07 19:13:05,562 - DEBUG - Taking top 8 variants by coverage in window 9:121733611-121733612
2012-10-07 19:13:06,390 - DEBUG - Taking top 8 variants by coverage in window 9:121740406-121740407
2012-10-07 19:13:06,422 - DEBUG - Taking top 8 variants by coverage in window 9:121740432-121740433
2012-10-07 19:13:06,940 - DEBUG - Taking top 8 variants by coverage in window 9:121743223-121743224
2012-10-07 19:13:06,961 - DEBUG - Taking top 8 variants by coverage in window 9:121743224-121743225
2012-10-07 19:13:07,285 - DEBUG - Taking top 8 variants by coverage in window 9:121745267-121745271
2012-10-07 19:13:07,363 - DEBUG - Taking top 8 variants by coverage in window 9:121745299-121745312
2012-10-07 19:13:07,960 - DEBUG - Taking top 8 variants by coverage in window 9:121749897-121749898
2012-10-07 19:13:08,332 - DEBUG - Taking top 8 variants by coverage in window 9:121752448-121752454
2012-10-07 19:13:08,731 - DEBUG - Taking top 8 variants by coverage in window 9:121755498-121755499
2012-10-07 19:13:08,824 - DEBUG - Taking top 8 variants by coverage in window 9:121755922-121755923
2012-10-07 19:13:09,131 - DEBUG - Taking top 8 variants by coverage in window 9:121758204-121758208
2012-10-07 19:13:09,298 - DEBUG - Taking top 8 variants by coverage in window 9:121758215-121758217
2012-10-07 19:13:10,438 - DEBUG - Taking top 8 variants by coverage in window 9:121772372-121772373
2012-10-07 19:13:10,469 - DEBUG - Taking top 8 variants by coverage in window 9:121772420-121772421
2012-10-07 19:13:10,512 - DEBUG - Taking top 8 variants by coverage in window 9:121772744-121772745
2012-10-07 19:13:10,557 - DEBUG - Taking top 8 variants by coverage in window 9:121773101-121773114
2012-10-07 19:13:10,692 - DEBUG - Taking top 8 variants by coverage in window 9:121773403-121773404
2012-10-07 19:13:10,829 - DEBUG - Taking top 8 variants by coverage in window 9:121774356-121774357
2012-10-07 19:13:11,987 - DEBUG - Taking top 8 variants by coverage in window 9:121787014-121787015
2012-10-07 19:13:12,295 - DEBUG - Taking top 8 variants by coverage in window 9:121788694-121788701
2012-10-07 19:13:12,461 - DEBUG - Taking top 8 variants by coverage in window 9:121788865-121788869
2012-10-07 19:13:12,623 - DEBUG - Taking top 8 variants by coverage in window 9:121788871-121788873
2012-10-07 19:13:13,415 - DEBUG - Taking top 8 variants by coverage in window 9:121798920-121798921
2012-10-07 19:13:13,629 - DEBUG - Taking top 8 variants by coverage in window 9:121802316-121802317
2012-10-07 19:13:13,826 - DEBUG - Taking top 8 variants by coverage in window 9:121804403-121804404
2012-10-07 19:13:14,516 - DEBUG - Taking top 8 variants by coverage in window 9:121805663-121805669
2012-10-07 19:13:14,724 - DEBUG - Taking top 8 variants by coverage in window 9:121805674-121805677
2012-10-07 19:13:15,065 - DEBUG - Taking top 8 variants by coverage in window 9:121807060-121807061
2012-10-07 19:13:15,787 - DEBUG - Taking top 8 variants by coverage in window 9:121814220-121814222
2012-10-07 19:13:15,943 - DEBUG - Taking top 8 variants by coverage in window 9:121814308-121814314
2012-10-07 19:13:16,668 - DEBUG - Taking top 8 variants by coverage in window 9:121822052-121822054
2012-10-07 19:13:16,719 - DEBUG - Taking top 8 variants by coverage in window 9:121822077-121822078
2012-10-07 19:13:17,786 - DEBUG - Taking top 8 variants by coverage in window 9:121834772-121834773
2012-10-07 19:13:18,074 - DEBUG - Taking top 8 variants by coverage in window 9:121837507-121837508
2012-10-07 19:13:18,182 - DEBUG - Taking top 8 variants by coverage in window 9:121838124-121838125
2012-10-07 19:13:18,300 - DEBUG - Taking top 8 variants by coverage in window 9:121838618-121838619
2012-10-07 19:13:18,738 - DEBUG - Taking top 8 variants by coverage in window 9:121843539-121843547
2012-10-07 19:13:19,240 - DEBUG - Taking top 8 variants by coverage in window 9:121849596-121849597
2012-10-07 19:13:19,474 - DEBUG - Taking top 8 variants by coverage in window 9:121852075-121852076
2012-10-07 19:13:19,696 - DEBUG - Taking top 8 variants by coverage in window 9:121855529-121855530
2012-10-07 19:13:19,740 - DEBUG - Taking top 8 variants by coverage in window 9:121855576-121855579
2012-10-07 19:13:21,445 - DEBUG - Taking top 8 variants by coverage in window 9:121869929-121869930
2012-10-07 19:13:21,483 - DEBUG - Taking top 8 variants by coverage in window 9:121869975-121869976
2012-10-07 19:13:21,599 - DEBUG - Taking top 8 variants by coverage in window 9:121870146-121870149
2012-10-07 19:13:21,668 - DEBUG - Taking top 8 variants by coverage in window 9:121870184-121870185
2012-10-07 19:13:21,821 - DEBUG - Taking top 8 variants by coverage in window 9:121870345-121870346
2012-10-07 19:13:21,911 - DEBUG - Taking top 8 variants by coverage in window 9:121870373-121870374
2012-10-07 19:13:22,091 - DEBUG - Taking top 8 variants by coverage in window 9:121872359-121872360
2012-10-07 19:13:22,427 - DEBUG - Taking top 8 variants by coverage in window 9:121876143-121876144
2012-10-07 19:13:22,508 - DEBUG - Taking top 8 variants by coverage in window 9:121876325-121876328
2012-10-07 19:13:23,490 - DEBUG - Taking top 8 variants by coverage in window 9:121884851-121884852
2012-10-07 19:13:24,197 - DEBUG - Taking top 8 variants by coverage in window 9:121893084-121893085
2012-10-07 19:13:24,352 - DEBUG - Taking top 8 variants by coverage in window 9:121894353-121894354
2012-10-07 19:13:24,839 - DEBUG - Taking top 8 variants by coverage in window 9:121897458-121897462
2012-10-07 19:13:24,874 - DEBUG - Taking top 8 variants by coverage in window 9:121897481-121897492
2012-10-07 19:13:25,284 - DEBUG - Taking top 8 variants by coverage in window 9:121901544-121901545
2012-10-07 19:13:25,463 - DEBUG - Taking top 8 variants by coverage in window 9:121902887-121902888
2012-10-07 19:13:25,485 - DEBUG - Taking top 8 variants by coverage in window 9:121902889-121902890
2012-10-07 19:13:26,696 - DEBUG - Taking top 8 variants by coverage in window 9:121917879-121917880
2012-10-07 19:13:26,704 - DEBUG - Taking top 8 variants by coverage in window 9:121917883-121917884
2012-10-07 19:13:27,040 - DEBUG - Taking top 8 variants by coverage in window 9:121921245-121921246
2012-10-07 19:13:27,081 - DEBUG - Taking top 8 variants by coverage in window 9:121921275-121921276
2012-10-07 19:13:27,817 - DEBUG - Taking top 8 variants by coverage in window 9:121925982-121925983
2012-10-07 19:13:27,882 - DEBUG - Taking top 8 variants by coverage in window 9:121926274-121926282
2012-10-07 19:13:28,097 - DEBUG - Taking top 8 variants by coverage in window 9:121927467-121927468
2012-10-07 19:13:28,602 - DEBUG - Taking top 8 variants by coverage in window 9:121933429-121933430
2012-10-07 19:13:29,155 - DEBUG - Taking top 8 variants by coverage in window 9:121935998-121936002
2012-10-07 19:13:29,176 - DEBUG - Taking top 8 variants by coverage in window 9:121936004-121936008
2012-10-07 19:13:29,305 - DEBUG - Taking top 8 variants by coverage in window 9:121936671-121936672
2012-10-07 19:13:29,428 - DEBUG - Taking top 8 variants by coverage in window 9:121937824-121937825
2012-10-07 19:13:29,443 - DEBUG - Taking top 8 variants by coverage in window 9:121937826-121937828
2012-10-07 19:13:30,448 - DEBUG - Taking top 8 variants by coverage in window 9:121944502-121944503
2012-10-07 19:13:30,546 - DEBUG - Taking top 8 variants by coverage in window 9:121944639-121944640
2012-10-07 19:13:30,994 - DEBUG - Taking top 8 variants by coverage in window 9:121947185-121947186
2012-10-07 19:13:31,310 - DEBUG - Taking top 8 variants by coverage in window 9:121948259-121948260
2012-10-07 19:13:31,473 - DEBUG - Taking top 8 variants by coverage in window 9:121948341-121948342
2012-10-07 19:13:31,877 - DEBUG - Taking top 8 variants by coverage in window 9:121948774-121948775
2012-10-07 19:13:32,252 - DEBUG - Taking top 8 variants by coverage in window 9:121951462-121951463
2012-10-07 19:13:32,575 - DEBUG - Taking top 8 variants by coverage in window 9:121952333-121952334
2012-10-07 19:13:32,642 - DEBUG - Taking top 8 variants by coverage in window 9:121952378-121952379
2012-10-07 19:13:33,105 - DEBUG - Taking top 8 variants by coverage in window 9:121953873-121953874
2012-10-07 19:13:33,303 - DEBUG - Taking top 8 variants by coverage in window 9:121954975-121954976
2012-10-07 19:13:34,798 - DEBUG - Taking top 8 variants by coverage in window 9:121966405-121966425
2012-10-07 19:13:35,517 - DEBUG - Taking top 8 variants by coverage in window 9:121972799-121972800
2012-10-07 19:13:35,539 - DEBUG - Taking top 8 variants by coverage in window 9:121972803-121972807
2012-10-07 19:13:36,728 - DEBUG - Taking top 8 variants by coverage in window 9:121983749-121983750
2012-10-07 19:13:36,758 - DEBUG - Taking top 8 variants by coverage in window 9:121983777-121983778
2012-10-07 19:13:37,091 - DEBUG - Taking top 8 variants by coverage in window 9:121988895-121988896
2012-10-07 19:13:37,803 - DEBUG - Taking top 8 variants by coverage in window 9:121995121-121995122
2012-10-07 19:13:37,811 - DEBUG - Taking top 8 variants by coverage in window 9:121995124-121995125
2012-10-07 19:13:39,486 - DEBUG - Read 102097 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 19:13:39,750 - DEBUG - Read 111164 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 19:13:40,026 - DEBUG - Read 126352 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 19:13:40,338 - DEBUG - Read 127926 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 19:13:40,630 - DEBUG - Read 119883 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 19:13:40,893 - DEBUG - Read 114865 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 19:13:41,166 - DEBUG - Read 121041 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 19:13:41,438 - DEBUG - Read 112075 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 19:13:41,692 - DEBUG - Read 107191 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 19:13:41,943 - DEBUG - Read 103507 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 19:13:42,220 - DEBUG - Read 116805 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 19:13:42,469 - DEBUG - Read 108056 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 19:13:42,729 - DEBUG - Read 108676 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 19:13:42,989 - DEBUG - Read 119552 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 19:13:43,276 - DEBUG - Read 128558 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 19:13:43,520 - DEBUG - Read 99659 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 19:13:43,866 - DEBUG - Read 122936 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 19:13:44,138 - DEBUG - Read 116085 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 19:13:44,427 - DEBUG - Read 104258 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 19:13:44,678 - DEBUG - Read 100409 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 19:13:44,787 - DEBUG - Detected 24644 variants in 102097 reads
2012-10-07 19:13:44,965 - DEBUG - Detected 36652 variants in 111164 reads
2012-10-07 19:13:45,203 - DEBUG - Detected 47123 variants in 126352 reads
2012-10-07 19:13:45,487 - DEBUG - Detected 56901 variants in 127926 reads
2012-10-07 19:13:45,806 - DEBUG - Detected 63665 variants in 119883 reads
2012-10-07 19:13:46,185 - DEBUG - Detected 70330 variants in 114865 reads
2012-10-07 19:13:46,575 - DEBUG - Detected 84718 variants in 121041 reads
2012-10-07 19:13:47,024 - DEBUG - Detected 91270 variants in 112075 reads
2012-10-07 19:13:47,499 - DEBUG - Detected 97301 variants in 107191 reads
2012-10-07 19:13:47,997 - DEBUG - Detected 102220 variants in 103507 reads
2012-10-07 19:13:48,577 - DEBUG - Detected 107974 variants in 116805 reads
2012-10-07 19:13:49,126 - DEBUG - Detected 112424 variants in 108056 reads
2012-10-07 19:13:49,698 - DEBUG - Detected 116911 variants in 108676 reads
2012-10-07 19:13:50,303 - DEBUG - Detected 122125 variants in 119552 reads
2012-10-07 19:13:50,944 - DEBUG - Detected 130308 variants in 128558 reads
2012-10-07 19:13:51,653 - DEBUG - Detected 134443 variants in 99659 reads
2012-10-07 19:13:52,341 - DEBUG - Detected 138535 variants in 122936 reads
2012-10-07 19:13:53,046 - DEBUG - Detected 142951 variants in 116085 reads
2012-10-07 19:13:53,756 - DEBUG - Detected 147844 variants in 104258 reads
2012-10-07 19:13:54,548 - DEBUG - Detected 152623 variants in 100409 reads
2012-10-07 19:13:56,515 - DEBUG - Taking top 8 variants by coverage in window 9:122007713-122007714
2012-10-07 19:13:57,033 - DEBUG - Taking top 8 variants by coverage in window 9:122011594-122011595
2012-10-07 19:13:57,701 - DEBUG - Taking top 8 variants by coverage in window 9:122014750-122014751
2012-10-07 19:13:59,043 - DEBUG - Taking top 8 variants by coverage in window 9:122025030-122025033
2012-10-07 19:13:59,112 - DEBUG - Taking top 8 variants by coverage in window 9:122025506-122025507
2012-10-07 19:13:59,327 - DEBUG - Taking top 8 variants by coverage in window 9:122028879-122028880
2012-10-07 19:13:59,353 - DEBUG - Taking top 8 variants by coverage in window 9:122028884-122028886
2012-10-07 19:13:59,657 - DEBUG - Taking top 8 variants by coverage in window 9:122032770-122032771
2012-10-07 19:13:59,670 - DEBUG - Taking top 8 variants by coverage in window 9:122032779-122032783
2012-10-07 19:14:00,345 - DEBUG - Taking top 8 variants by coverage in window 9:122041207-122041208
2012-10-07 19:14:01,011 - DEBUG - Taking top 8 variants by coverage in window 9:122048066-122048067
2012-10-07 19:14:01,162 - DEBUG - Taking top 8 variants by coverage in window 9:122049447-122049448
2012-10-07 19:14:01,421 - DEBUG - Taking top 8 variants by coverage in window 9:122052051-122052052
2012-10-07 19:14:01,939 - DEBUG - Taking top 8 variants by coverage in window 9:122057958-122057959
2012-10-07 19:14:02,505 - DEBUG - Taking top 8 variants by coverage in window 9:122062939-122062940
2012-10-07 19:14:02,568 - DEBUG - Taking top 8 variants by coverage in window 9:122062965-122062969
2012-10-07 19:14:02,737 - DEBUG - Taking top 8 variants by coverage in window 9:122063011-122063020
2012-10-07 19:14:03,258 - DEBUG - Taking top 8 variants by coverage in window 9:122065267-122065269
2012-10-07 19:14:03,799 - DEBUG - Taking top 8 variants by coverage in window 9:122074496-122074501
2012-10-07 19:14:05,164 - DEBUG - Taking top 8 variants by coverage in window 9:122089971-122089973
2012-10-07 19:14:05,354 - DEBUG - Taking top 8 variants by coverage in window 9:122091010-122091012
2012-10-07 19:14:05,803 - DEBUG - Taking top 8 variants by coverage in window 9:122096688-122096689
2012-10-07 19:14:06,828 - DEBUG - Taking top 8 variants by coverage in window 9:122107905-122107906
2012-10-07 19:14:07,698 - DEBUG - Taking top 8 variants by coverage in window 9:122115375-122115379
2012-10-07 19:14:07,714 - DEBUG - Taking top 8 variants by coverage in window 9:122115380-122115381
2012-10-07 19:14:07,753 - DEBUG - Taking top 8 variants by coverage in window 9:122115396-122115397
2012-10-07 19:14:08,742 - DEBUG - Taking top 8 variants by coverage in window 9:122123738-122123739
2012-10-07 19:14:09,848 - DEBUG - Taking top 8 variants by coverage in window 9:122133740-122133750
2012-10-07 19:14:10,686 - DEBUG - Taking top 8 variants by coverage in window 9:122135126-122135127
2012-10-07 19:14:11,016 - DEBUG - Taking top 8 variants by coverage in window 9:122137192-122137199
2012-10-07 19:14:11,159 - DEBUG - Taking top 8 variants by coverage in window 9:122137884-122137885
2012-10-07 19:14:11,362 - DEBUG - Taking top 8 variants by coverage in window 9:122138937-122138938
2012-10-07 19:14:11,392 - DEBUG - Taking top 8 variants by coverage in window 9:122138973-122138974
2012-10-07 19:14:11,518 - DEBUG - Taking top 8 variants by coverage in window 9:122139943-122139944
2012-10-07 19:14:11,556 - DEBUG - Taking top 8 variants by coverage in window 9:122139993-122139994
2012-10-07 19:14:11,697 - DEBUG - Taking top 8 variants by coverage in window 9:122140094-122140095
2012-10-07 19:14:12,021 - DEBUG - Taking top 8 variants by coverage in window 9:122140130-122140136
2012-10-07 19:14:12,805 - DEBUG - Taking top 8 variants by coverage in window 9:122140138-122140142
2012-10-07 19:14:12,955 - DEBUG - Taking top 8 variants by coverage in window 9:122140150-122140154
2012-10-07 19:14:13,423 - DEBUG - Taking top 8 variants by coverage in window 9:122140181-122140182
2012-10-07 19:14:13,841 - DEBUG - Taking top 8 variants by coverage in window 9:122142579-122142581
2012-10-07 19:14:15,429 - DEBUG - Taking top 8 variants by coverage in window 9:122142612-122142613
2012-10-07 19:14:15,708 - DEBUG - Taking top 8 variants by coverage in window 9:122143584-122143585
2012-10-07 19:14:16,564 - DEBUG - Taking top 8 variants by coverage in window 9:122151452-122151453
2012-10-07 19:14:16,912 - DEBUG - Taking top 8 variants by coverage in window 9:122155021-122155025
2012-10-07 19:14:16,989 - DEBUG - Taking top 8 variants by coverage in window 9:122155044-122155045
2012-10-07 19:14:17,028 - DEBUG - Taking top 8 variants by coverage in window 9:122155047-122155048
2012-10-07 19:14:17,074 - DEBUG - Taking top 8 variants by coverage in window 9:122155077-122155078
2012-10-07 19:14:17,103 - DEBUG - Taking top 8 variants by coverage in window 9:122155081-122155082
2012-10-07 19:14:17,617 - DEBUG - Taking top 8 variants by coverage in window 9:122159402-122159403
2012-10-07 19:14:18,041 - DEBUG - Taking top 8 variants by coverage in window 9:122160905-122160906
2012-10-07 19:14:18,053 - DEBUG - Taking top 8 variants by coverage in window 9:122160909-122160912
2012-10-07 19:14:18,073 - DEBUG - Taking top 8 variants by coverage in window 9:122160918-122160921
2012-10-07 19:14:18,112 - DEBUG - Taking top 8 variants by coverage in window 9:122160949-122160950
2012-10-07 19:14:18,144 - DEBUG - Taking top 8 variants by coverage in window 9:122160973-122160974
2012-10-07 19:14:18,376 - DEBUG - Taking top 8 variants by coverage in window 9:122163032-122163038
2012-10-07 19:14:18,449 - DEBUG - Taking top 8 variants by coverage in window 9:122163366-122163367
2012-10-07 19:14:18,830 - DEBUG - Taking top 8 variants by coverage in window 9:122165273-122165276
2012-10-07 19:14:19,688 - DEBUG - Taking top 8 variants by coverage in window 9:122171915-122171925
2012-10-07 19:14:21,849 - DEBUG - Taking top 8 variants by coverage in window 9:122171936-122171937
2012-10-07 19:14:21,965 - DEBUG - Taking top 8 variants by coverage in window 9:122172512-122172513
2012-10-07 19:14:22,136 - DEBUG - Taking top 8 variants by coverage in window 9:122173290-122173291
2012-10-07 19:14:23,697 - DEBUG - Taking top 8 variants by coverage in window 9:122191321-122191322
2012-10-07 19:14:23,732 - DEBUG - Taking top 8 variants by coverage in window 9:122191349-122191350
2012-10-07 19:14:24,600 - DEBUG - Taking top 8 variants by coverage in window 9:122199761-122199762
2012-10-07 19:14:25,048 - DEBUG - Taking top 8 variants by coverage in window 9:122204004-122204005
2012-10-07 19:14:25,376 - DEBUG - Taking top 8 variants by coverage in window 9:122213089-122213090
2012-10-07 19:14:25,467 - DEBUG - Taking top 8 variants by coverage in window 9:122213864-122213865
2012-10-07 19:14:25,633 - DEBUG - Taking top 8 variants by coverage in window 9:122215745-122215749
2012-10-07 19:14:26,186 - DEBUG - Taking top 8 variants by coverage in window 9:122222119-122222120
2012-10-07 19:14:26,706 - DEBUG - Taking top 8 variants by coverage in window 9:122226237-122226238
2012-10-07 19:14:26,783 - DEBUG - Taking top 8 variants by coverage in window 9:122226491-122226495
2012-10-07 19:14:26,852 - DEBUG - Taking top 8 variants by coverage in window 9:122226513-122226515
2012-10-07 19:14:27,080 - DEBUG - Taking top 8 variants by coverage in window 9:122228375-122228376
2012-10-07 19:14:27,140 - DEBUG - Taking top 8 variants by coverage in window 9:122228402-122228414
2012-10-07 19:14:27,477 - DEBUG - Taking top 8 variants by coverage in window 9:122232359-122232360
2012-10-07 19:14:27,486 - DEBUG - Taking top 8 variants by coverage in window 9:122232381-122232382
2012-10-07 19:14:28,409 - DEBUG - Taking top 8 variants by coverage in window 9:122246674-122246680
2012-10-07 19:14:28,470 - DEBUG - Taking top 8 variants by coverage in window 9:122246696-122246697
2012-10-07 19:14:28,840 - DEBUG - Taking top 8 variants by coverage in window 9:122251243-122251244
2012-10-07 19:14:30,512 - DEBUG - Taking top 8 variants by coverage in window 9:122272109-122272110
2012-10-07 19:14:31,489 - DEBUG - Taking top 8 variants by coverage in window 9:122284206-122284208
2012-10-07 19:14:32,251 - DEBUG - Taking top 8 variants by coverage in window 9:122293779-122293780
2012-10-07 19:14:32,284 - DEBUG - Taking top 8 variants by coverage in window 9:122293786-122293787
2012-10-07 19:14:32,368 - DEBUG - Taking top 8 variants by coverage in window 9:122293809-122293810
2012-10-07 19:14:32,479 - DEBUG - Taking top 8 variants by coverage in window 9:122293843-122293844
2012-10-07 19:14:32,498 - DEBUG - Taking top 8 variants by coverage in window 9:122293844-122293845
2012-10-07 19:14:32,534 - DEBUG - Taking top 8 variants by coverage in window 9:122293845-122293846
2012-10-07 19:14:32,665 - DEBUG - Taking top 8 variants by coverage in window 9:122294047-122294053
2012-10-07 19:14:33,603 - DEBUG - Taking top 8 variants by coverage in window 9:122300651-122300652
2012-10-07 19:14:33,852 - DEBUG - Taking top 8 variants by coverage in window 9:122301913-122301917
2012-10-07 19:14:34,447 - DEBUG - Taking top 8 variants by coverage in window 9:122305748-122305749
2012-10-07 19:14:34,874 - DEBUG - Taking top 8 variants by coverage in window 9:122310608-122310609
2012-10-07 19:14:34,885 - DEBUG - Taking top 8 variants by coverage in window 9:122310638-122310639
2012-10-07 19:14:34,937 - DEBUG - Taking top 8 variants by coverage in window 9:122310796-122310797
2012-10-07 19:14:34,963 - DEBUG - Taking top 8 variants by coverage in window 9:122317857-122317858
2012-10-07 19:14:36,507 - DEBUG - Taking top 8 variants by coverage in window 9:122328474-122328475
2012-10-07 19:14:36,644 - DEBUG - Taking top 8 variants by coverage in window 9:122331044-122331045
2012-10-07 19:14:37,455 - DEBUG - Taking top 8 variants by coverage in window 9:122342367-122342368
2012-10-07 19:14:37,499 - DEBUG - Taking top 8 variants by coverage in window 9:122342863-122342864
2012-10-07 19:14:37,732 - DEBUG - Taking top 8 variants by coverage in window 9:122347204-122347205
2012-10-07 19:14:38,666 - DEBUG - Taking top 8 variants by coverage in window 9:122351026-122351027
2012-10-07 19:14:38,861 - DEBUG - Taking top 8 variants by coverage in window 9:122352765-122352766
2012-10-07 19:14:39,080 - DEBUG - Taking top 8 variants by coverage in window 9:122355631-122355632
2012-10-07 19:14:39,368 - DEBUG - Taking top 8 variants by coverage in window 9:122359941-122359942
2012-10-07 19:14:39,497 - DEBUG - Taking top 8 variants by coverage in window 9:122363178-122363179
2012-10-07 19:14:40,396 - DEBUG - Taking top 8 variants by coverage in window 9:122371853-122371854
2012-10-07 19:14:40,539 - DEBUG - Taking top 8 variants by coverage in window 9:122373145-122373155
2012-10-07 19:14:41,135 - DEBUG - Taking top 8 variants by coverage in window 9:122382841-122382842
2012-10-07 19:14:41,963 - DEBUG - Taking top 8 variants by coverage in window 9:122394293-122394295
2012-10-07 19:14:42,497 - DEBUG - Taking top 8 variants by coverage in window 9:122398107-122398108
2012-10-07 19:14:42,613 - DEBUG - Taking top 8 variants by coverage in window 9:122398324-122398334
2012-10-07 19:14:42,776 - DEBUG - Taking top 8 variants by coverage in window 9:122398587-122398597
2012-10-07 19:14:45,507 - DEBUG - Taking top 8 variants by coverage in window 9:122411366-122411367
2012-10-07 19:14:45,664 - DEBUG - Taking top 8 variants by coverage in window 9:122412301-122412310
2012-10-07 19:14:45,800 - DEBUG - Taking top 8 variants by coverage in window 9:122413029-122413031
2012-10-07 19:14:46,138 - DEBUG - Taking top 8 variants by coverage in window 9:122416020-122416027
2012-10-07 19:14:46,381 - DEBUG - Taking top 8 variants by coverage in window 9:122416124-122416131
2012-10-07 19:14:46,773 - DEBUG - Taking top 8 variants by coverage in window 9:122418466-122418469
2012-10-07 19:14:46,986 - DEBUG - Taking top 8 variants by coverage in window 9:122419360-122419361
2012-10-07 19:14:47,114 - DEBUG - Taking top 8 variants by coverage in window 9:122420229-122420230
2012-10-07 19:14:47,160 - DEBUG - Taking top 8 variants by coverage in window 9:122420604-122420605
2012-10-07 19:14:47,176 - DEBUG - Taking top 8 variants by coverage in window 9:122420618-122420619
2012-10-07 19:14:47,377 - DEBUG - Taking top 8 variants by coverage in window 9:122422730-122422731
2012-10-07 19:14:47,393 - DEBUG - Taking top 8 variants by coverage in window 9:122422733-122422734
2012-10-07 19:14:47,428 - DEBUG - Taking top 8 variants by coverage in window 9:122423015-122423022
2012-10-07 19:14:47,484 - DEBUG - Taking top 8 variants by coverage in window 9:122423280-122423281
2012-10-07 19:14:47,606 - DEBUG - Taking top 8 variants by coverage in window 9:122424306-122424314
2012-10-07 19:14:47,623 - DEBUG - Taking top 8 variants by coverage in window 9:122424315-122424318
2012-10-07 19:14:48,383 - DEBUG - Taking top 8 variants by coverage in window 9:122424339-122424340
2012-10-07 19:14:48,866 - DEBUG - Taking top 8 variants by coverage in window 9:122424884-122424885
2012-10-07 19:14:49,075 - DEBUG - Taking top 8 variants by coverage in window 9:122427557-122427558
2012-10-07 19:14:49,128 - DEBUG - Taking top 8 variants by coverage in window 9:122427560-122427561
2012-10-07 19:14:50,008 - DEBUG - Taking top 8 variants by coverage in window 9:122437197-122437198
2012-10-07 19:14:51,508 - DEBUG - Taking top 8 variants by coverage in window 9:122448423-122448424
2012-10-07 19:14:51,800 - DEBUG - Taking top 8 variants by coverage in window 9:122455353-122455354
2012-10-07 19:14:52,914 - DEBUG - Taking top 8 variants by coverage in window 9:122470092-122470105
2012-10-07 19:14:52,923 - DEBUG - Taking top 8 variants by coverage in window 9:122470107-122470108
2012-10-07 19:14:52,962 - DEBUG - Taking top 8 variants by coverage in window 9:122470128-122470129
2012-10-07 19:14:53,034 - DEBUG - Taking top 8 variants by coverage in window 9:122470551-122470556
2012-10-07 19:14:53,613 - DEBUG - Taking top 8 variants by coverage in window 9:122476067-122476068
2012-10-07 19:14:53,785 - DEBUG - Taking top 8 variants by coverage in window 9:122479634-122479635
2012-10-07 19:14:54,191 - DEBUG - Taking top 8 variants by coverage in window 9:122485875-122485876
2012-10-07 19:14:54,468 - DEBUG - Taking top 8 variants by coverage in window 9:122489055-122489056
2012-10-07 19:14:54,497 - DEBUG - Taking top 8 variants by coverage in window 9:122489059-122489060
2012-10-07 19:14:54,537 - DEBUG - Taking top 8 variants by coverage in window 9:122489063-122489064
2012-10-07 19:14:56,346 - DEBUG - Taking top 8 variants by coverage in window 9:122508162-122508163
2012-10-07 19:14:58,002 - DEBUG - Taking top 8 variants by coverage in window 9:122518277-122518291
2012-10-07 19:14:58,139 - DEBUG - Taking top 8 variants by coverage in window 9:122520012-122520014
2012-10-07 19:14:58,443 - DEBUG - Taking top 8 variants by coverage in window 9:122522315-122522318
2012-10-07 19:14:58,476 - DEBUG - Taking top 8 variants by coverage in window 9:122522334-122522335
2012-10-07 19:14:58,726 - DEBUG - Taking top 8 variants by coverage in window 9:122525843-122525844
2012-10-07 19:14:58,770 - DEBUG - Taking top 8 variants by coverage in window 9:122526016-122526017
2012-10-07 19:14:59,340 - DEBUG - Taking top 8 variants by coverage in window 9:122530261-122530262
2012-10-07 19:14:59,457 - DEBUG - Taking top 8 variants by coverage in window 9:122531372-122531373
2012-10-07 19:14:59,580 - DEBUG - Taking top 8 variants by coverage in window 9:122532348-122532351
2012-10-07 19:14:59,619 - DEBUG - Taking top 8 variants by coverage in window 9:122532374-122532377
2012-10-07 19:14:59,640 - DEBUG - Taking top 8 variants by coverage in window 9:122532390-122532391
2012-10-07 19:14:59,818 - DEBUG - Taking top 8 variants by coverage in window 9:122534514-122534524
2012-10-07 19:15:00,056 - DEBUG - Taking top 8 variants by coverage in window 9:122536567-122536568
2012-10-07 19:15:00,534 - DEBUG - Taking top 8 variants by coverage in window 9:122542633-122542634
2012-10-07 19:15:00,903 - DEBUG - Taking top 8 variants by coverage in window 9:122548101-122548105
2012-10-07 19:15:01,047 - DEBUG - Taking top 8 variants by coverage in window 9:122549161-122549164
2012-10-07 19:15:02,080 - DEBUG - Taking top 8 variants by coverage in window 9:122559751-122559752
2012-10-07 19:15:03,311 - DEBUG - Taking top 8 variants by coverage in window 9:122569775-122569779
2012-10-07 19:15:04,097 - DEBUG - Taking top 8 variants by coverage in window 9:122576213-122576214
2012-10-07 19:15:04,266 - DEBUG - Taking top 8 variants by coverage in window 9:122578439-122578440
2012-10-07 19:15:04,563 - DEBUG - Taking top 8 variants by coverage in window 9:122582011-122582021
2012-10-07 19:15:04,851 - DEBUG - Taking top 8 variants by coverage in window 9:122583999-122584000
2012-10-07 19:15:05,636 - DEBUG - Taking top 8 variants by coverage in window 9:122591673-122591674
2012-10-07 19:15:05,674 - DEBUG - Taking top 8 variants by coverage in window 9:122591696-122591697
2012-10-07 19:15:05,740 - DEBUG - Taking top 8 variants by coverage in window 9:122591734-122591754
2012-10-07 19:15:06,043 - DEBUG - Taking top 8 variants by coverage in window 9:122595060-122595061
2012-10-07 19:15:06,666 - DEBUG - Taking top 8 variants by coverage in window 9:122597535-122597551
2012-10-07 19:15:07,331 - DEBUG - Taking top 8 variants by coverage in window 9:122603695-122603698
2012-10-07 19:15:07,787 - DEBUG - Taking top 8 variants by coverage in window 9:122609743-122609744
2012-10-07 19:15:08,071 - DEBUG - Taking top 8 variants by coverage in window 9:122612549-122612550
2012-10-07 19:15:08,099 - DEBUG - Taking top 8 variants by coverage in window 9:122618975-122618987
2012-10-07 19:15:08,111 - DEBUG - Taking top 8 variants by coverage in window 9:122618994-122618995
2012-10-07 19:15:08,767 - DEBUG - Taking top 8 variants by coverage in window 9:122626419-122626420
2012-10-07 19:15:08,785 - DEBUG - Taking top 8 variants by coverage in window 9:122626432-122626433
2012-10-07 19:15:08,795 - DEBUG - Taking top 8 variants by coverage in window 9:122626435-122626436
2012-10-07 19:15:08,964 - DEBUG - Taking top 8 variants by coverage in window 9:122627997-122627998
2012-10-07 19:15:10,378 - DEBUG - Taking top 8 variants by coverage in window 9:122640831-122640832
2012-10-07 19:15:11,871 - DEBUG - Taking top 8 variants by coverage in window 9:122661390-122661391
2012-10-07 19:15:11,921 - DEBUG - Taking top 8 variants by coverage in window 9:122661431-122661432
2012-10-07 19:15:12,136 - DEBUG - Taking top 8 variants by coverage in window 9:122663585-122663586
2012-10-07 19:15:13,209 - DEBUG - Taking top 8 variants by coverage in window 9:122675776-122675777
2012-10-07 19:15:13,227 - DEBUG - Taking top 8 variants by coverage in window 9:122675777-122675781
2012-10-07 19:15:13,855 - DEBUG - Taking top 8 variants by coverage in window 9:122679281-122679282
2012-10-07 19:15:13,900 - DEBUG - Taking top 8 variants by coverage in window 9:122679332-122679355
2012-10-07 19:15:14,316 - DEBUG - Taking top 8 variants by coverage in window 9:122686752-122686753
2012-10-07 19:15:14,354 - DEBUG - Taking top 8 variants by coverage in window 9:122686789-122686792
2012-10-07 19:15:14,506 - DEBUG - Taking top 8 variants by coverage in window 9:122689326-122689327
2012-10-07 19:15:16,404 - DEBUG - Taking top 8 variants by coverage in window 9:122717622-122717623
2012-10-07 19:15:16,915 - DEBUG - Taking top 8 variants by coverage in window 9:122727413-122727414
2012-10-07 19:15:17,289 - DEBUG - Taking top 8 variants by coverage in window 9:122733417-122733418
2012-10-07 19:15:17,633 - DEBUG - Taking top 8 variants by coverage in window 9:122735036-122735037
2012-10-07 19:15:18,059 - DEBUG - Taking top 8 variants by coverage in window 9:122742019-122742020
2012-10-07 19:15:18,757 - DEBUG - Taking top 8 variants by coverage in window 9:122754233-122754234
2012-10-07 19:15:19,542 - DEBUG - Taking top 8 variants by coverage in window 9:122771305-122771306
2012-10-07 19:15:19,585 - DEBUG - Taking top 8 variants by coverage in window 9:122771356-122771357
2012-10-07 19:15:19,599 - DEBUG - Taking top 8 variants by coverage in window 9:122771357-122771358
2012-10-07 19:15:21,715 - DEBUG - Taking top 8 variants by coverage in window 9:122801029-122801031
2012-10-07 19:15:22,145 - DEBUG - Taking top 8 variants by coverage in window 9:122806752-122806753
2012-10-07 19:15:22,236 - DEBUG - Taking top 8 variants by coverage in window 9:122807167-122807168
2012-10-07 19:15:22,310 - DEBUG - Taking top 8 variants by coverage in window 9:122807209-122807210
2012-10-07 19:15:22,389 - DEBUG - Taking top 8 variants by coverage in window 9:122807745-122807746
2012-10-07 19:15:22,698 - DEBUG - Taking top 8 variants by coverage in window 9:122810633-122810634
2012-10-07 19:15:23,770 - DEBUG - Taking top 8 variants by coverage in window 9:122827224-122827228
2012-10-07 19:15:23,833 - DEBUG - Taking top 8 variants by coverage in window 9:122827529-122827530
2012-10-07 19:15:24,297 - DEBUG - Taking top 8 variants by coverage in window 9:122840204-122840209
2012-10-07 19:15:24,444 - DEBUG - Taking top 8 variants by coverage in window 9:122841259-122841263
2012-10-07 19:15:24,460 - DEBUG - Taking top 8 variants by coverage in window 9:122841287-122841288
2012-10-07 19:15:24,628 - DEBUG - Taking top 8 variants by coverage in window 9:122844324-122844325
2012-10-07 19:15:24,683 - DEBUG - Taking top 8 variants by coverage in window 9:122845433-122845437
2012-10-07 19:15:25,184 - DEBUG - Taking top 8 variants by coverage in window 9:122852726-122852727
2012-10-07 19:15:25,232 - DEBUG - Taking top 8 variants by coverage in window 9:122852786-122852787
2012-10-07 19:15:25,951 - DEBUG - Taking top 8 variants by coverage in window 9:122863086-122863087
2012-10-07 19:15:26,077 - DEBUG - Taking top 8 variants by coverage in window 9:122865349-122865350
2012-10-07 19:15:26,693 - DEBUG - Taking top 8 variants by coverage in window 9:122873152-122873153
2012-10-07 19:15:26,731 - DEBUG - Taking top 8 variants by coverage in window 9:122873177-122873179
2012-10-07 19:15:26,849 - DEBUG - Taking top 8 variants by coverage in window 9:122874183-122874184
2012-10-07 19:15:27,504 - DEBUG - Taking top 8 variants by coverage in window 9:122880905-122880906
2012-10-07 19:15:27,733 - DEBUG - Taking top 8 variants by coverage in window 9:122882450-122882453
2012-10-07 19:15:27,978 - DEBUG - Taking top 8 variants by coverage in window 9:122882552-122882553
2012-10-07 19:15:28,808 - DEBUG - Taking top 8 variants by coverage in window 9:122896516-122896517
2012-10-07 19:15:29,059 - DEBUG - Taking top 8 variants by coverage in window 9:122901925-122901926
2012-10-07 19:15:29,489 - DEBUG - Taking top 8 variants by coverage in window 9:122907191-122907198
2012-10-07 19:15:29,498 - DEBUG - Taking top 8 variants by coverage in window 9:122907210-122907211
2012-10-07 19:15:29,976 - DEBUG - Taking top 8 variants by coverage in window 9:122913849-122913850
2012-10-07 19:15:30,362 - DEBUG - Taking top 8 variants by coverage in window 9:122919410-122919413
2012-10-07 19:15:30,457 - DEBUG - Taking top 8 variants by coverage in window 9:122920362-122920363
2012-10-07 19:15:30,664 - DEBUG - Taking top 8 variants by coverage in window 9:122923848-122923849
2012-10-07 19:15:30,674 - DEBUG - Taking top 8 variants by coverage in window 9:122923867-122923868
2012-10-07 19:15:31,008 - DEBUG - Taking top 8 variants by coverage in window 9:122930366-122930367
2012-10-07 19:15:31,890 - DEBUG - Taking top 8 variants by coverage in window 9:122938683-122938686
2012-10-07 19:15:32,277 - DEBUG - Taking top 8 variants by coverage in window 9:122939208-122939210
2012-10-07 19:15:32,379 - DEBUG - Taking top 8 variants by coverage in window 9:122939282-122939283
2012-10-07 19:15:32,684 - DEBUG - Taking top 8 variants by coverage in window 9:122940120-122940121
2012-10-07 19:15:33,776 - DEBUG - Taking top 8 variants by coverage in window 9:122952279-122952290
2012-10-07 19:15:33,821 - DEBUG - Taking top 8 variants by coverage in window 9:122952323-122952329
2012-10-07 19:15:33,864 - DEBUG - Taking top 8 variants by coverage in window 9:122952342-122952364
2012-10-07 19:15:34,021 - DEBUG - Taking top 8 variants by coverage in window 9:122952730-122952741
2012-10-07 19:15:34,374 - DEBUG - Taking top 8 variants by coverage in window 9:122956393-122956395
2012-10-07 19:15:34,471 - DEBUG - Taking top 8 variants by coverage in window 9:122956960-122956961
2012-10-07 19:15:34,570 - DEBUG - Taking top 8 variants by coverage in window 9:122958245-122958246
2012-10-07 19:15:35,061 - DEBUG - Taking top 8 variants by coverage in window 9:122961368-122961369
2012-10-07 19:15:35,507 - DEBUG - Taking top 8 variants by coverage in window 9:122966137-122966138
2012-10-07 19:15:35,519 - DEBUG - Taking top 8 variants by coverage in window 9:122966138-122966139
2012-10-07 19:15:35,531 - DEBUG - Taking top 8 variants by coverage in window 9:122966139-122966140
2012-10-07 19:15:35,656 - DEBUG - Taking top 8 variants by coverage in window 9:122966145-122966146
2012-10-07 19:15:35,874 - DEBUG - Taking top 8 variants by coverage in window 9:122967999-122968005
2012-10-07 19:15:36,239 - DEBUG - Taking top 8 variants by coverage in window 9:122971980-122971981
2012-10-07 19:15:37,314 - DEBUG - Taking top 8 variants by coverage in window 9:122982276-122982282
2012-10-07 19:15:37,525 - DEBUG - Taking top 8 variants by coverage in window 9:122983459-122983460
2012-10-07 19:15:37,543 - DEBUG - Taking top 8 variants by coverage in window 9:122983462-122983464
2012-10-07 19:15:37,754 - DEBUG - Taking top 8 variants by coverage in window 9:122984463-122984464
2012-10-07 19:15:37,823 - DEBUG - Taking top 8 variants by coverage in window 9:122984526-122984527
2012-10-07 19:15:37,885 - DEBUG - Taking top 8 variants by coverage in window 9:122984549-122984550
2012-10-07 19:15:38,259 - DEBUG - Taking top 8 variants by coverage in window 9:122990514-122990516
2012-10-07 19:15:38,324 - DEBUG - Taking top 8 variants by coverage in window 9:122990811-122990812
2012-10-07 19:15:38,452 - DEBUG - Taking top 8 variants by coverage in window 9:122992085-122992109
2012-10-07 19:15:38,473 - DEBUG - Taking top 8 variants by coverage in window 9:122992139-122992140
2012-10-07 19:15:38,602 - DEBUG - Taking top 8 variants by coverage in window 9:122993546-122993547
2012-10-07 19:15:38,616 - DEBUG - Taking top 8 variants by coverage in window 9:122993547-122993550
2012-10-07 19:15:38,761 - DEBUG - Taking top 8 variants by coverage in window 9:122996464-122996482
2012-10-07 19:15:38,865 - DEBUG - Taking top 8 variants by coverage in window 9:122996840-122996841
2012-10-07 19:15:40,145 - DEBUG - Read 96445 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 19:15:40,386 - DEBUG - Read 99159 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 19:15:40,648 - DEBUG - Read 114769 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 19:15:40,940 - DEBUG - Read 115438 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 19:15:41,209 - DEBUG - Read 107272 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 19:15:41,455 - DEBUG - Read 102725 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 19:15:41,720 - DEBUG - Read 115320 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 19:15:41,967 - DEBUG - Read 97753 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 19:15:42,203 - DEBUG - Read 95878 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 19:15:42,439 - DEBUG - Read 93625 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 19:15:42,695 - DEBUG - Read 105235 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 19:15:42,928 - DEBUG - Read 99498 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 19:15:43,165 - DEBUG - Read 95630 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 19:15:43,404 - DEBUG - Read 104727 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 19:15:43,678 - DEBUG - Read 117615 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 19:15:43,896 - DEBUG - Read 86005 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 19:15:44,162 - DEBUG - Read 117016 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 19:15:44,418 - DEBUG - Read 104523 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 19:15:44,646 - DEBUG - Read 95545 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 19:15:44,883 - DEBUG - Read 91470 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 19:15:45,000 - DEBUG - Detected 23204 variants in 96445 reads
2012-10-07 19:15:45,159 - DEBUG - Detected 33839 variants in 99159 reads
2012-10-07 19:15:45,372 - DEBUG - Detected 43271 variants in 114769 reads
2012-10-07 19:15:45,626 - DEBUG - Detected 52033 variants in 115438 reads
2012-10-07 19:15:45,906 - DEBUG - Detected 58303 variants in 107272 reads
2012-10-07 19:15:46,210 - DEBUG - Detected 63765 variants in 102725 reads
2012-10-07 19:15:46,595 - DEBUG - Detected 78173 variants in 115320 reads
2012-10-07 19:15:46,990 - DEBUG - Detected 83877 variants in 97753 reads
2012-10-07 19:15:47,413 - DEBUG - Detected 89422 variants in 95878 reads
2012-10-07 19:15:47,859 - DEBUG - Detected 94296 variants in 93625 reads
2012-10-07 19:15:48,337 - DEBUG - Detected 98996 variants in 105235 reads
2012-10-07 19:15:48,832 - DEBUG - Detected 103395 variants in 99498 reads
2012-10-07 19:15:49,345 - DEBUG - Detected 108032 variants in 95630 reads
2012-10-07 19:15:49,924 - DEBUG - Detected 112427 variants in 104727 reads
2012-10-07 19:15:50,507 - DEBUG - Detected 119779 variants in 117615 reads
2012-10-07 19:15:51,090 - DEBUG - Detected 123799 variants in 86005 reads
2012-10-07 19:15:51,722 - DEBUG - Detected 127475 variants in 117016 reads
2012-10-07 19:15:52,415 - DEBUG - Detected 131978 variants in 104523 reads
2012-10-07 19:15:53,065 - DEBUG - Detected 136323 variants in 95545 reads
2012-10-07 19:15:53,739 - DEBUG - Detected 140710 variants in 91470 reads
2012-10-07 19:15:54,952 - DEBUG - Taking top 8 variants by coverage in window 9:123003478-123003479
2012-10-07 19:15:55,302 - DEBUG - Taking top 8 variants by coverage in window 9:123008545-123008546
2012-10-07 19:15:55,863 - DEBUG - Taking top 8 variants by coverage in window 9:123014797-123014798
2012-10-07 19:15:55,949 - DEBUG - Taking top 8 variants by coverage in window 9:123014861-123014862
2012-10-07 19:15:56,566 - DEBUG - Taking top 8 variants by coverage in window 9:123022983-123022985
2012-10-07 19:15:56,664 - DEBUG - Taking top 8 variants by coverage in window 9:123023139-123023140
2012-10-07 19:15:58,064 - DEBUG - Taking top 8 variants by coverage in window 9:123038059-123038060
2012-10-07 19:15:58,628 - DEBUG - Taking top 8 variants by coverage in window 9:123043412-123043413
2012-10-07 19:15:58,679 - DEBUG - Taking top 8 variants by coverage in window 9:123043414-123043415
2012-10-07 19:15:58,948 - DEBUG - Taking top 8 variants by coverage in window 9:123044026-123044027
2012-10-07 19:15:59,896 - DEBUG - Taking top 8 variants by coverage in window 9:123053209-123053210
2012-10-07 19:16:00,249 - DEBUG - Taking top 8 variants by coverage in window 9:123056740-123056741
2012-10-07 19:16:00,582 - DEBUG - Taking top 8 variants by coverage in window 9:123060715-123060716
2012-10-07 19:16:01,388 - DEBUG - Taking top 8 variants by coverage in window 9:123068367-123068368
2012-10-07 19:16:01,428 - DEBUG - Taking top 8 variants by coverage in window 9:123068538-123068539
2012-10-07 19:16:02,331 - DEBUG - Taking top 8 variants by coverage in window 9:123077153-123077158
2012-10-07 19:16:02,497 - DEBUG - Taking top 8 variants by coverage in window 9:123077426-123077427
2012-10-07 19:16:03,611 - DEBUG - Taking top 8 variants by coverage in window 9:123090018-123090019
2012-10-07 19:16:03,996 - DEBUG - Taking top 8 variants by coverage in window 9:123091134-123091135
2012-10-07 19:16:04,222 - DEBUG - Taking top 8 variants by coverage in window 9:123091163-123091164
2012-10-07 19:16:04,690 - DEBUG - Taking top 8 variants by coverage in window 9:123092315-123092316
2012-10-07 19:16:04,977 - DEBUG - Taking top 8 variants by coverage in window 9:123096181-123096182
2012-10-07 19:16:05,129 - DEBUG - Taking top 8 variants by coverage in window 9:123097051-123097053
2012-10-07 19:16:05,384 - DEBUG - Taking top 8 variants by coverage in window 9:123099382-123099385
2012-10-07 19:16:05,465 - DEBUG - Taking top 8 variants by coverage in window 9:123099949-123099953
2012-10-07 19:16:05,615 - DEBUG - Taking top 8 variants by coverage in window 9:123107300-123107319
2012-10-07 19:16:05,621 - DEBUG - Taking top 8 variants by coverage in window 9:123107324-123107325
2012-10-07 19:16:05,910 - DEBUG - Taking top 8 variants by coverage in window 9:123111379-123111387
2012-10-07 19:16:05,952 - DEBUG - Taking top 8 variants by coverage in window 9:123111389-123111394
2012-10-07 19:16:05,977 - DEBUG - Taking top 8 variants by coverage in window 9:123111416-123111421
2012-10-07 19:16:06,684 - DEBUG - Taking top 8 variants by coverage in window 9:123118326-123118327
2012-10-07 19:16:06,745 - DEBUG - Taking top 8 variants by coverage in window 9:123118550-123118558
2012-10-07 19:16:06,880 - DEBUG - Taking top 8 variants by coverage in window 9:123119273-123119277
2012-10-07 19:16:06,996 - DEBUG - Taking top 8 variants by coverage in window 9:123121230-123121231
2012-10-07 19:16:07,580 - DEBUG - Taking top 8 variants by coverage in window 9:123130162-123130173
2012-10-07 19:16:08,599 - DEBUG - Taking top 8 variants by coverage in window 9:123136968-123136969
2012-10-07 19:16:08,748 - DEBUG - Taking top 8 variants by coverage in window 9:123138117-123138121
2012-10-07 19:16:09,737 - DEBUG - Taking top 8 variants by coverage in window 9:123147430-123147439
2012-10-07 19:16:09,802 - DEBUG - Taking top 8 variants by coverage in window 9:123147712-123147717
2012-10-07 19:16:09,879 - DEBUG - Taking top 8 variants by coverage in window 9:123148566-123148568
2012-10-07 19:16:10,156 - DEBUG - Taking top 8 variants by coverage in window 9:123149580-123149581
2012-10-07 19:16:10,379 - DEBUG - Taking top 8 variants by coverage in window 9:123150967-123150970
2012-10-07 19:16:11,089 - DEBUG - Taking top 8 variants by coverage in window 9:123157775-123157781
2012-10-07 19:16:11,204 - DEBUG - Taking top 8 variants by coverage in window 9:123157792-123157795
2012-10-07 19:16:12,457 - DEBUG - Taking top 8 variants by coverage in window 9:123170291-123170292
2012-10-07 19:16:12,655 - DEBUG - Taking top 8 variants by coverage in window 9:123171593-123171594
2012-10-07 19:16:13,089 - DEBUG - Taking top 8 variants by coverage in window 9:123173370-123173371
2012-10-07 19:16:13,415 - DEBUG - Taking top 8 variants by coverage in window 9:123175623-123175624
2012-10-07 19:16:13,445 - DEBUG - Taking top 8 variants by coverage in window 9:123175626-123175627
2012-10-07 19:16:13,740 - DEBUG - Taking top 8 variants by coverage in window 9:123177761-123177770
2012-10-07 19:16:13,916 - DEBUG - Taking top 8 variants by coverage in window 9:123178830-123178832
2012-10-07 19:16:14,580 - DEBUG - Taking top 8 variants by coverage in window 9:123188067-123188072
2012-10-07 19:16:14,735 - DEBUG - Taking top 8 variants by coverage in window 9:123190872-123190874
2012-10-07 19:16:15,438 - DEBUG - Taking top 8 variants by coverage in window 9:123201142-123201143
2012-10-07 19:16:15,801 - DEBUG - Taking top 8 variants by coverage in window 9:123205703-123205704
2012-10-07 19:16:15,879 - DEBUG - Taking top 8 variants by coverage in window 9:123205878-123205879
2012-10-07 19:16:15,897 - DEBUG - Taking top 8 variants by coverage in window 9:123205907-123205908
2012-10-07 19:16:16,122 - DEBUG - Taking top 8 variants by coverage in window 9:123208225-123208230
2012-10-07 19:16:16,180 - DEBUG - Taking top 8 variants by coverage in window 9:123208252-123208253
2012-10-07 19:16:16,534 - DEBUG - Taking top 8 variants by coverage in window 9:123211353-123211354
2012-10-07 19:16:16,746 - DEBUG - Taking top 8 variants by coverage in window 9:123213687-123213688
2012-10-07 19:16:16,773 - DEBUG - Taking top 8 variants by coverage in window 9:123214002-123214003
2012-10-07 19:16:17,145 - DEBUG - Taking top 8 variants by coverage in window 9:123217461-123217462
2012-10-07 19:16:17,364 - DEBUG - Taking top 8 variants by coverage in window 9:123220342-123220343
2012-10-07 19:16:17,460 - DEBUG - Taking top 8 variants by coverage in window 9:123221203-123221206
2012-10-07 19:16:19,221 - DEBUG - Taking top 8 variants by coverage in window 9:123237735-123237736
2012-10-07 19:16:19,310 - DEBUG - Taking top 8 variants by coverage in window 9:123238375-123238376
2012-10-07 19:16:19,315 - DEBUG - Taking top 8 variants by coverage in window 9:123238388-123238389
2012-10-07 19:16:20,080 - DEBUG - Taking top 8 variants by coverage in window 9:123245448-123245451
2012-10-07 19:16:20,119 - DEBUG - Taking top 8 variants by coverage in window 9:123245468-123245469
2012-10-07 19:16:20,865 - DEBUG - Taking top 8 variants by coverage in window 9:123256083-123256093
2012-10-07 19:16:21,748 - DEBUG - Taking top 8 variants by coverage in window 9:123264449-123264453
2012-10-07 19:16:21,998 - DEBUG - Taking top 8 variants by coverage in window 9:123264794-123264800
2012-10-07 19:16:22,901 - DEBUG - Taking top 8 variants by coverage in window 9:123274200-123274211
2012-10-07 19:16:23,274 - DEBUG - Taking top 8 variants by coverage in window 9:123278813-123278815
2012-10-07 19:16:23,566 - DEBUG - Taking top 8 variants by coverage in window 9:123281822-123281823
2012-10-07 19:16:24,372 - DEBUG - Taking top 8 variants by coverage in window 9:123287998-123287999
2012-10-07 19:16:25,207 - DEBUG - Taking top 8 variants by coverage in window 9:123299665-123299666
2012-10-07 19:16:25,284 - DEBUG - Taking top 8 variants by coverage in window 9:123300429-123300442
2012-10-07 19:16:25,643 - DEBUG - Taking top 8 variants by coverage in window 9:123303549-123303551
2012-10-07 19:16:25,824 - DEBUG - Taking top 8 variants by coverage in window 9:123304996-123305000
2012-10-07 19:16:25,972 - DEBUG - Taking top 8 variants by coverage in window 9:123306454-123306459
2012-10-07 19:16:26,022 - DEBUG - Taking top 8 variants by coverage in window 9:123306494-123306498
2012-10-07 19:16:26,140 - DEBUG - Taking top 8 variants by coverage in window 9:123307589-123307591
2012-10-07 19:16:26,600 - DEBUG - Taking top 8 variants by coverage in window 9:123310915-123310917
2012-10-07 19:16:27,438 - DEBUG - Taking top 8 variants by coverage in window 9:123323330-123323331
2012-10-07 19:16:28,127 - DEBUG - Taking top 8 variants by coverage in window 9:123329470-123329475
2012-10-07 19:16:28,277 - DEBUG - Taking top 8 variants by coverage in window 9:123329480-123329482
2012-10-07 19:16:28,639 - DEBUG - Taking top 8 variants by coverage in window 9:123330721-123330722
2012-10-07 19:16:28,726 - DEBUG - Taking top 8 variants by coverage in window 9:123330775-123330776
2012-10-07 19:16:29,319 - DEBUG - Taking top 8 variants by coverage in window 9:123333963-123333964
2012-10-07 19:16:29,680 - DEBUG - Taking top 8 variants by coverage in window 9:123337448-123337449
2012-10-07 19:16:29,920 - DEBUG - Taking top 8 variants by coverage in window 9:123340042-123340045
2012-10-07 19:16:30,661 - DEBUG - Taking top 8 variants by coverage in window 9:123348623-123348624
2012-10-07 19:16:30,681 - DEBUG - Taking top 8 variants by coverage in window 9:123348634-123348635
2012-10-07 19:16:31,455 - DEBUG - Taking top 8 variants by coverage in window 9:123354615-123354616
2012-10-07 19:16:31,526 - DEBUG - Taking top 8 variants by coverage in window 9:123354675-123354677
2012-10-07 19:16:31,549 - DEBUG - Taking top 8 variants by coverage in window 9:123354678-123354679
2012-10-07 19:16:31,851 - DEBUG - Taking top 8 variants by coverage in window 9:123357854-123357855
2012-10-07 19:16:31,890 - DEBUG - Taking top 8 variants by coverage in window 9:123357928-123357929
2012-10-07 19:16:32,328 - DEBUG - Taking top 8 variants by coverage in window 9:123364002-123364003
2012-10-07 19:16:32,335 - DEBUG - Taking top 8 variants by coverage in window 9:123364003-123364004
2012-10-07 19:16:32,373 - DEBUG - Taking top 8 variants by coverage in window 9:123364022-123364023
2012-10-07 19:16:32,474 - DEBUG - Taking top 8 variants by coverage in window 9:123365264-123365272
2012-10-07 19:16:33,039 - DEBUG - Taking top 8 variants by coverage in window 9:123370919-123370920
2012-10-07 19:16:45,758 - DEBUG - Taking top 8 variants by coverage in window 9:123371303-123371304
2012-10-07 19:16:45,823 - DEBUG - Taking top 8 variants by coverage in window 9:123371304-123371305
2012-10-07 19:16:46,216 - DEBUG - Taking top 8 variants by coverage in window 9:123372793-123372794
2012-10-07 19:16:46,244 - DEBUG - Taking top 8 variants by coverage in window 9:123372818-123372819
2012-10-07 19:16:46,561 - DEBUG - Taking top 8 variants by coverage in window 9:123376010-123376011
2012-10-07 19:16:47,415 - DEBUG - Taking top 8 variants by coverage in window 9:123386342-123386343
2012-10-07 19:16:47,690 - DEBUG - Taking top 8 variants by coverage in window 9:123390820-123390821
2012-10-07 19:16:48,019 - DEBUG - Taking top 8 variants by coverage in window 9:123395297-123395299
2012-10-07 19:16:48,338 - DEBUG - Taking top 8 variants by coverage in window 9:123398142-123398143
2012-10-07 19:16:48,517 - DEBUG - Taking top 8 variants by coverage in window 9:123399474-123399482
2012-10-07 19:16:48,733 - DEBUG - Taking top 8 variants by coverage in window 9:123401046-123401047
2012-10-07 19:16:48,972 - DEBUG - Taking top 8 variants by coverage in window 9:123403191-123403192
2012-10-07 19:16:49,093 - DEBUG - Taking top 8 variants by coverage in window 9:123404188-123404190
2012-10-07 19:16:49,519 - DEBUG - Taking top 8 variants by coverage in window 9:123407684-123407685
2012-10-07 19:16:49,601 - DEBUG - Taking top 8 variants by coverage in window 9:123407778-123407781
2012-10-07 19:16:49,659 - DEBUG - Taking top 8 variants by coverage in window 9:123407801-123407802
2012-10-07 19:16:50,581 - DEBUG - Taking top 8 variants by coverage in window 9:123418132-123418133
2012-10-07 19:16:50,615 - DEBUG - Taking top 8 variants by coverage in window 9:123418134-123418135
2012-10-07 19:16:50,891 - DEBUG - Taking top 8 variants by coverage in window 9:123419901-123419902
2012-10-07 19:16:51,068 - DEBUG - Taking top 8 variants by coverage in window 9:123421410-123421411
2012-10-07 19:16:51,417 - DEBUG - Taking top 8 variants by coverage in window 9:123423323-123423325
2012-10-07 19:16:51,444 - DEBUG - Taking top 8 variants by coverage in window 9:123423511-123423512
2012-10-07 19:16:52,266 - DEBUG - Taking top 8 variants by coverage in window 9:123432089-123432090
2012-10-07 19:16:52,702 - DEBUG - Taking top 8 variants by coverage in window 9:123436776-123436777
2012-10-07 19:16:52,711 - DEBUG - Taking top 8 variants by coverage in window 9:123436779-123436780
2012-10-07 19:16:53,958 - DEBUG - Taking top 8 variants by coverage in window 9:123454966-123454991
2012-10-07 19:16:54,254 - DEBUG - Taking top 8 variants by coverage in window 9:123457369-123457370
2012-10-07 19:16:54,406 - DEBUG - Taking top 8 variants by coverage in window 9:123458849-123458850
2012-10-07 19:16:54,424 - DEBUG - Taking top 8 variants by coverage in window 9:123458860-123458862
2012-10-07 19:16:54,458 - DEBUG - Taking top 8 variants by coverage in window 9:123458864-123458865
2012-10-07 19:16:54,671 - DEBUG - Taking top 8 variants by coverage in window 9:123460546-123460552
2012-10-07 19:16:55,199 - DEBUG - Taking top 8 variants by coverage in window 9:123467695-123467697
2012-10-07 19:16:56,719 - DEBUG - Taking top 8 variants by coverage in window 9:123486597-123486599
2012-10-07 19:16:56,763 - DEBUG - Taking top 8 variants by coverage in window 9:123486613-123486614
2012-10-07 19:16:56,777 - DEBUG - Taking top 8 variants by coverage in window 9:123486616-123486617
2012-10-07 19:16:56,987 - DEBUG - Taking top 8 variants by coverage in window 9:123487880-123487881
2012-10-07 19:16:57,267 - DEBUG - Taking top 8 variants by coverage in window 9:123492033-123492034
2012-10-07 19:16:57,858 - DEBUG - Taking top 8 variants by coverage in window 9:123498267-123498268
2012-10-07 19:16:58,436 - DEBUG - Taking top 8 variants by coverage in window 9:123506262-123506263
2012-10-07 19:16:58,636 - DEBUG - Taking top 8 variants by coverage in window 9:123507882-123507883
2012-10-07 19:16:59,075 - DEBUG - Taking top 8 variants by coverage in window 9:123512523-123512524
2012-10-07 19:17:00,371 - DEBUG - Taking top 8 variants by coverage in window 9:123531437-123531441
2012-10-07 19:17:00,389 - DEBUG - Taking top 8 variants by coverage in window 9:123531443-123531452
2012-10-07 19:17:01,063 - DEBUG - Taking top 8 variants by coverage in window 9:123540006-123540007
2012-10-07 19:17:01,615 - DEBUG - Taking top 8 variants by coverage in window 9:123549123-123549124
2012-10-07 19:17:01,687 - DEBUG - Taking top 8 variants by coverage in window 9:123549598-123549599
2012-10-07 19:17:03,115 - DEBUG - Taking top 8 variants by coverage in window 9:123566477-123566478
2012-10-07 19:17:03,539 - DEBUG - Taking top 8 variants by coverage in window 9:123571570-123571576
2012-10-07 19:17:03,759 - DEBUG - Taking top 8 variants by coverage in window 9:123573541-123573544
2012-10-07 19:17:06,303 - DEBUG - Taking top 8 variants by coverage in window 9:123575522-123575523
2012-10-07 19:17:06,461 - DEBUG - Taking top 8 variants by coverage in window 9:123577166-123577167
2012-10-07 19:17:06,576 - DEBUG - Taking top 8 variants by coverage in window 9:123577953-123577954
2012-10-07 19:17:06,885 - DEBUG - Taking top 8 variants by coverage in window 9:123580998-123580999
2012-10-07 19:17:06,904 - DEBUG - Taking top 8 variants by coverage in window 9:123581024-123581025
2012-10-07 19:17:07,478 - DEBUG - Taking top 8 variants by coverage in window 9:123588176-123588177
2012-10-07 19:17:08,184 - DEBUG - Taking top 8 variants by coverage in window 9:123596252-123596253
2012-10-07 19:17:08,216 - DEBUG - Taking top 8 variants by coverage in window 9:123596262-123596263
2012-10-07 19:17:08,363 - DEBUG - Taking top 8 variants by coverage in window 9:123596528-123596529
2012-10-07 19:17:08,441 - DEBUG - Taking top 8 variants by coverage in window 9:123597175-123597176
2012-10-07 19:17:08,458 - DEBUG - Taking top 8 variants by coverage in window 9:123597189-123597190
2012-10-07 19:17:08,501 - DEBUG - Taking top 8 variants by coverage in window 9:123597980-123597982
2012-10-07 19:17:08,532 - DEBUG - Taking top 8 variants by coverage in window 9:123599392-123599393
2012-10-07 19:17:10,250 - DEBUG - Taking top 8 variants by coverage in window 9:123626534-123626535
2012-10-07 19:17:10,277 - DEBUG - Taking top 8 variants by coverage in window 9:123626568-123626569
2012-10-07 19:17:11,029 - DEBUG - Taking top 8 variants by coverage in window 9:123636498-123636499
2012-10-07 19:17:11,652 - DEBUG - Taking top 8 variants by coverage in window 9:123643892-123643894
2012-10-07 19:17:11,964 - DEBUG - Taking top 8 variants by coverage in window 9:123646955-123646974
2012-10-07 19:17:12,244 - DEBUG - Taking top 8 variants by coverage in window 9:123650966-123650967
2012-10-07 19:17:12,358 - DEBUG - Taking top 8 variants by coverage in window 9:123658927-123658928
2012-10-07 19:17:13,163 - DEBUG - Taking top 8 variants by coverage in window 9:123673626-123673627
2012-10-07 19:17:13,604 - DEBUG - Taking top 8 variants by coverage in window 9:123681248-123681251
2012-10-07 19:17:14,012 - DEBUG - Taking top 8 variants by coverage in window 9:123684263-123684268
2012-10-07 19:17:14,286 - DEBUG - Taking top 8 variants by coverage in window 9:123684403-123684409
2012-10-07 19:17:16,447 - DEBUG - Taking top 8 variants by coverage in window 9:123684443-123684451
2012-10-07 19:17:21,417 - DEBUG - Taking top 8 variants by coverage in window 9:123684537-123684545
2012-10-07 19:17:21,805 - DEBUG - Taking top 8 variants by coverage in window 9:123685688-123685689
2012-10-07 19:17:21,906 - DEBUG - Taking top 8 variants by coverage in window 9:123687458-123687459
2012-10-07 19:17:24,597 - DEBUG - Taking top 8 variants by coverage in window 9:123729864-123729865
2012-10-07 19:17:24,688 - DEBUG - Taking top 8 variants by coverage in window 9:123730225-123730226
2012-10-07 19:17:24,741 - DEBUG - Taking top 8 variants by coverage in window 9:123731195-123731196
2012-10-07 19:17:24,975 - DEBUG - Taking top 8 variants by coverage in window 9:123732819-123732820
2012-10-07 19:17:25,014 - DEBUG - Taking top 8 variants by coverage in window 9:123732842-123732843
2012-10-07 19:17:25,176 - DEBUG - Taking top 8 variants by coverage in window 9:123733780-123733781
2012-10-07 19:17:25,242 - DEBUG - Taking top 8 variants by coverage in window 9:123733937-123733938
2012-10-07 19:17:25,359 - DEBUG - Taking top 8 variants by coverage in window 9:123735870-123735872
2012-10-07 19:17:25,520 - DEBUG - Taking top 8 variants by coverage in window 9:123738468-123738469
2012-10-07 19:17:25,850 - DEBUG - Taking top 8 variants by coverage in window 9:123744210-123744211
2012-10-07 19:17:26,957 - DEBUG - Taking top 8 variants by coverage in window 9:123760466-123760467
2012-10-07 19:17:26,983 - DEBUG - Taking top 8 variants by coverage in window 9:123760491-123760492
2012-10-07 19:17:27,100 - DEBUG - Taking top 8 variants by coverage in window 9:123760675-123760676
2012-10-07 19:17:27,125 - DEBUG - Taking top 8 variants by coverage in window 9:123760685-123760686
2012-10-07 19:17:27,468 - DEBUG - Taking top 8 variants by coverage in window 9:123764143-123764144
2012-10-07 19:17:27,489 - DEBUG - Taking top 8 variants by coverage in window 9:123764173-123764174
2012-10-07 19:17:27,906 - DEBUG - Taking top 8 variants by coverage in window 9:123770492-123770493
2012-10-07 19:17:27,915 - DEBUG - Taking top 8 variants by coverage in window 9:123770592-123770593
2012-10-07 19:17:28,111 - DEBUG - Taking top 8 variants by coverage in window 9:123771661-123771668
2012-10-07 19:17:28,185 - DEBUG - Taking top 8 variants by coverage in window 9:123779753-123779754
2012-10-07 19:17:28,698 - DEBUG - Taking top 8 variants by coverage in window 9:123832336-123832337
2012-10-07 19:17:28,747 - DEBUG - Taking top 8 variants by coverage in window 9:123832565-123832577
2012-10-07 19:17:28,760 - DEBUG - Taking top 8 variants by coverage in window 9:123832580-123832586
2012-10-07 19:17:29,220 - DEBUG - Taking top 8 variants by coverage in window 9:123840923-123840924
2012-10-07 19:17:29,594 - DEBUG - Taking top 8 variants by coverage in window 9:123841963-123841964
2012-10-07 19:17:29,739 - DEBUG - Taking top 8 variants by coverage in window 9:123842844-123842845
2012-10-07 19:17:29,991 - DEBUG - Taking top 8 variants by coverage in window 9:123843393-123843394
2012-10-07 19:17:30,176 - DEBUG - Taking top 8 variants by coverage in window 9:123844002-123844003
2012-10-07 19:17:30,230 - DEBUG - Taking top 8 variants by coverage in window 9:123844008-123844009
2012-10-07 19:17:30,487 - DEBUG - Taking top 8 variants by coverage in window 9:123844766-123844768
2012-10-07 19:17:30,886 - DEBUG - Taking top 8 variants by coverage in window 9:123847681-123847682
2012-10-07 19:17:31,499 - DEBUG - Taking top 8 variants by coverage in window 9:123856527-123856528
2012-10-07 19:17:31,508 - DEBUG - Taking top 8 variants by coverage in window 9:123856556-123856557
2012-10-07 19:17:31,553 - DEBUG - Taking top 8 variants by coverage in window 9:123856940-123856944
2012-10-07 19:17:31,705 - DEBUG - Taking top 8 variants by coverage in window 9:123858693-123858694
2012-10-07 19:17:31,746 - DEBUG - Taking top 8 variants by coverage in window 9:123858945-123858950
2012-10-07 19:17:31,999 - DEBUG - Taking top 8 variants by coverage in window 9:123864144-123864145
2012-10-07 19:17:32,008 - DEBUG - Taking top 8 variants by coverage in window 9:123864245-123864246
2012-10-07 19:17:32,257 - DEBUG - Taking top 8 variants by coverage in window 9:123874563-123874568
2012-10-07 19:17:34,253 - DEBUG - Taking top 8 variants by coverage in window 9:123910970-123910979
2012-10-07 19:17:34,641 - DEBUG - Taking top 8 variants by coverage in window 9:123911028-123911034
2012-10-07 19:17:36,484 - DEBUG - Taking top 8 variants by coverage in window 9:123950135-123950143
2012-10-07 19:17:36,547 - DEBUG - Taking top 8 variants by coverage in window 9:123950175-123950179
2012-10-07 19:17:37,289 - DEBUG - Taking top 8 variants by coverage in window 9:123969722-123969723
2012-10-07 19:17:37,310 - DEBUG - Taking top 8 variants by coverage in window 9:123969803-123969805
2012-10-07 19:17:39,757 - DEBUG - Read 9005 reads from file(s) ['/data/mus/bams/taiwan/tw1000_A.bam'].
2012-10-07 19:17:39,802 - DEBUG - Read 6604 reads from file(s) ['/data/mus/bams/taiwan/tw1011_A.bam'].
2012-10-07 19:17:39,850 - DEBUG - Read 7668 reads from file(s) ['/data/mus/bams/taiwan/tw1057_A.bam'].
2012-10-07 19:17:39,898 - DEBUG - Read 7598 reads from file(s) ['/data/mus/bams/taiwan/tw1143_A.bam'].
2012-10-07 19:17:39,947 - DEBUG - Read 7519 reads from file(s) ['/data/mus/bams/taiwan/tw1145_A.bam'].
2012-10-07 19:17:39,992 - DEBUG - Read 6761 reads from file(s) ['/data/mus/bams/taiwan/tw1167_A.bam'].
2012-10-07 19:17:40,038 - DEBUG - Read 6903 reads from file(s) ['/data/mus/bams/taiwan/tw1172_A.bam'].
2012-10-07 19:17:40,083 - DEBUG - Read 6423 reads from file(s) ['/data/mus/bams/taiwan/tw1200_A.bam'].
2012-10-07 19:17:40,129 - DEBUG - Read 6346 reads from file(s) ['/data/mus/bams/taiwan/tw1231_A.bam'].
2012-10-07 19:17:40,174 - DEBUG - Read 6519 reads from file(s) ['/data/mus/bams/taiwan/tw1237_A.bam'].
2012-10-07 19:17:40,220 - DEBUG - Read 6588 reads from file(s) ['/data/mus/bams/taiwan/tw1291_A.bam'].
2012-10-07 19:17:40,269 - DEBUG - Read 9108 reads from file(s) ['/data/mus/bams/taiwan/tw667_A.bam'].
2012-10-07 19:17:40,313 - DEBUG - Read 5695 reads from file(s) ['/data/mus/bams/taiwan/tw746_A.bam'].
2012-10-07 19:17:40,358 - DEBUG - Read 6664 reads from file(s) ['/data/mus/bams/taiwan/tw747_A.bam'].
2012-10-07 19:17:40,405 - DEBUG - Read 7479 reads from file(s) ['/data/mus/bams/taiwan/tw807_A.bam'].
2012-10-07 19:17:40,450 - DEBUG - Read 5404 reads from file(s) ['/data/mus/bams/taiwan/tw813_A.bam'].
2012-10-07 19:17:40,497 - DEBUG - Read 7639 reads from file(s) ['/data/mus/bams/taiwan/tw851_A.bam'].
2012-10-07 19:17:40,544 - DEBUG - Read 6890 reads from file(s) ['/data/mus/bams/taiwan/tw873_A.bam'].
2012-10-07 19:17:40,588 - DEBUG - Read 6141 reads from file(s) ['/data/mus/bams/taiwan/tw837_A.bam'].
2012-10-07 19:17:40,632 - DEBUG - Read 5829 reads from file(s) ['/data/mus/bams/taiwan/tw1294_A.bam'].
2012-10-07 19:17:40,653 - DEBUG - Detected 1506 variants in 9005 reads
2012-10-07 19:17:40,660 - DEBUG - Detected 2013 variants in 6604 reads
2012-10-07 19:17:40,671 - DEBUG - Detected 2668 variants in 7668 reads
2012-10-07 19:17:40,683 - DEBUG - Detected 3197 variants in 7598 reads
2012-10-07 19:17:40,696 - DEBUG - Detected 3503 variants in 7519 reads
2012-10-07 19:17:40,710 - DEBUG - Detected 3862 variants in 6761 reads
2012-10-07 19:17:40,726 - DEBUG - Detected 4869 variants in 6903 reads
2012-10-07 19:17:40,745 - DEBUG - Detected 5374 variants in 6423 reads
2012-10-07 19:17:40,765 - DEBUG - Detected 5729 variants in 6346 reads
2012-10-07 19:17:40,785 - DEBUG - Detected 6043 variants in 6519 reads
2012-10-07 19:17:40,808 - DEBUG - Detected 6432 variants in 6588 reads
2012-10-07 19:17:40,832 - DEBUG - Detected 6777 variants in 9108 reads
2012-10-07 19:17:40,856 - DEBUG - Detected 7067 variants in 5695 reads
2012-10-07 19:17:40,882 - DEBUG - Detected 7412 variants in 6664 reads
2012-10-07 19:17:40,908 - DEBUG - Detected 7977 variants in 7479 reads
2012-10-07 19:17:40,936 - DEBUG - Detected 8292 variants in 5404 reads
2012-10-07 19:17:40,965 - DEBUG - Detected 8586 variants in 7639 reads
2012-10-07 19:17:40,995 - DEBUG - Detected 8922 variants in 6890 reads
2012-10-07 19:17:41,025 - DEBUG - Detected 9166 variants in 6141 reads
2012-10-07 19:17:41,056 - DEBUG - Detected 9554 variants in 5829 reads
2012-10-07 19:17:41,539 - DEBUG - Taking top 8 variants by coverage in window 9:124007027-124007028
2012-10-07 19:17:43,332 - DEBUG - Taking top 8 variants by coverage in window 9:124046776-124046777
2012-10-07 19:17:43,348 - DEBUG - Taking top 8 variants by coverage in window 9:124046778-124046779
2012-10-07 19:17:44,162 - DEBUG - Taking top 8 variants by coverage in window 9:124058904-124058911
2012-10-07 19:17:44,641 - DEBUG - Taking top 8 variants by coverage in window 9:124067148-124067158
2012-10-07 19:17:45,032 - INFO - Finished variant calling