2014-08-07T07:40:29 1407393629896 0 global INFO gsa_snp.GSA sort 23 The SNP sequence is not sorted. 2014-08-07T07:40:29 1407393629907 1 global INFO gsa_snp.GSA sort 23 Sorting begins. 2014-08-07T07:40:46 1407393646223 2 global INFO gsa_snp.GSA sort 23 Sorting done. 2014-08-07T07:40:46 1407393646473 3 global INFO gsa_snp.GSA getSNPs 23 processing 100000th SNP... 2014-08-07T07:40:46 1407393646614 4 global INFO gsa_snp.GSA getSNPs 23 processing 200000th SNP... 2014-08-07T07:40:46 1407393646784 5 global INFO gsa_snp.GSA getSNPs 23 processing 300000th SNP... 2014-08-07T07:40:46 1407393646912 6 global INFO gsa_snp.GSA getSNPs 23 processing 400000th SNP... 2014-08-07T07:40:47 1407393647107 7 global INFO gsa_snp.GSA getSNPs 23 processing 500000th SNP... 2014-08-07T07:40:47 1407393647216 8 global INFO gsa_snp.GSA getSNPs 23 processing 600000th SNP... 2014-08-07T07:40:47 1407393647386 9 global INFO gsa_snp.GSA getSNPs 23 processing 700000th SNP... 2014-08-07T07:40:47 1407393647519 10 global INFO gsa_snp.GSA getSNPs 23 processing 800000th SNP... 2014-08-07T07:40:48 1407393648145 11 global INFO gsa_snp.GSA getSNPs 23 processing 900000th SNP... 2014-08-07T07:40:48 1407393648271 12 global INFO gsa_snp.GSA getSNPs 23 processing 1000000th SNP... 2014-08-07T07:40:48 1407393648473 13 global INFO gsa_snp.GSA getSNPs 23 processing 1100000th SNP... 2014-08-07T07:40:48 1407393648714 14 global INFO gsa_snp.GSA getSNPs 23 processing 1200000th SNP... 2014-08-07T07:40:48 1407393648830 15 global INFO gsa_snp.GSA getSNPs 23 processing 1300000th SNP... 2014-08-07T07:40:49 1407393649118 16 global INFO gsa_snp.GSA getSNPs 23 processing 1400000th SNP... 2014-08-07T07:40:49 1407393649382 17 global INFO gsa_snp.GSA getSNPs 23 processing 1500000th SNP... 2014-08-07T07:40:49 1407393649509 18 global INFO gsa_snp.GSA getSNPs 23 processing 1600000th SNP... 2014-08-07T07:40:49 1407393649690 19 global INFO gsa_snp.GSA getSNPs 23 processing 1700000th SNP... 2014-08-07T07:40:49 1407393649798 20 global INFO gsa_snp.GSA getSNPs 23 processing 1800000th SNP... 2014-08-07T07:40:50 1407393650106 21 global INFO gsa_snp.GSA getSNPs 23 processing 1900000th SNP... 2014-08-07T07:40:50 1407393650222 22 global INFO gsa_snp.GSA getSNPs 23 processing 2000000th SNP... 2014-08-07T07:40:50 1407393650495 23 global INFO gsa_snp.GSA getSNPs 23 processing 2100000th SNP... 2014-08-07T07:40:50 1407393650613 24 global INFO gsa_snp.GSA getSNPs 23 processing 2200000th SNP... 2014-08-07T07:40:50 1407393650897 25 global INFO gsa_snp.GSA getSNPs 23 processing 2300000th SNP... 2014-08-07T07:40:51 1407393651035 26 global INFO gsa_snp.GSA getSNPs 23 processing 2400000th SNP... 2014-08-07T07:40:52 1407393652432 27 global INFO gsa_snp.GSA getSNPs 23 processing 2500000th SNP... 2014-08-07T07:40:52 1407393652555 28 global INFO gsa_snp.GSA getSNPs 23 processing 2600000th SNP... 2014-08-07T07:40:52 1407393652693 29 global INFO gsa_snp.GSA getSNPs 23 processing 2700000th SNP... 2014-08-07T07:40:52 1407393652899 30 global INFO gsa_snp.GSA getSNPs 23 processing 2800000th SNP... 2014-08-07T07:40:53 1407393653093 31 global INFO gsa_snp.GSA getSNPs 23 processing 2900000th SNP... 2014-08-07T07:40:53 1407393653339 32 global INFO gsa_snp.GSA getSNPs 23 processing 3000000th SNP... 2014-08-07T07:40:53 1407393653469 33 global INFO gsa_snp.GSA getSNPs 23 processing 3100000th SNP... 2014-08-07T07:40:53 1407393653636 34 global INFO gsa_snp.GSA getSNPs 23 processing 3200000th SNP... 2014-08-07T07:40:53 1407393653853 35 global INFO gsa_snp.GSA getSNPs 23 processing 3300000th SNP... 2014-08-07T07:40:53 1407393653962 36 global INFO gsa_snp.GSA getSNPs 23 processing 3400000th SNP... 2014-08-07T07:40:54 1407393654344 37 global INFO gsa_snp.GSA getSNPs 23 processing 3500000th SNP... 2014-08-07T07:40:54 1407393654479 38 global INFO gsa_snp.GSA getSNPs 23 processing 3600000th SNP... 2014-08-07T07:40:54 1407393654630 39 global INFO gsa_snp.GSA getSNPs 23 processing 3700000th SNP... 2014-08-07T07:40:54 1407393654990 40 global INFO gsa_snp.GSA getSNPs 23 processing 3800000th SNP... 2014-08-07T07:40:55 1407393655113 41 global INFO gsa_snp.GSA getSNPs 23 processing 3900000th SNP... 2014-08-07T07:40:55 1407393655253 42 global INFO gsa_snp.GSA getSNPs 23 processing 4000000th SNP... 2014-08-07T07:40:55 1407393655606 43 global INFO gsa_snp.GSA getSNPs 23 processing 4100000th SNP... 2014-08-07T07:40:55 1407393655749 44 global INFO gsa_snp.GSA getSNPs 23 processing 4200000th SNP... 2014-08-07T07:40:55 1407393655883 45 global INFO gsa_snp.GSA getSNPs 23 processing 4300000th SNP... 2014-08-07T07:40:57 1407393657816 46 global INFO gsa_snp.GSA getSNPs 23 processing 4400000th SNP... 2014-08-07T07:40:58 1407393658308 47 global INFO gsa_snp.GSA getSNPs 23 processing 4500000th SNP... 2014-08-07T07:40:58 1407393658821 48 global INFO gsa_snp.GSA getSNPs 23 processing 4600000th SNP... 2014-08-07T07:40:59 1407393659125 49 global INFO gsa_snp.GSA getSNPs 23 processing 4700000th SNP... 2014-08-07T07:41:01 1407393661251 50 global INFO gsa_snp.GSA getSNPs 23 processing 4800000th SNP... 2014-08-07T07:41:01 1407393661483 51 global INFO gsa_snp.GSA getSNPs 23 processing 4900000th SNP... 2014-08-07T07:41:03 1407393663595 52 global INFO gsa_snp.GSA getSNPs 23 processing 5000000th SNP... 2014-08-07T07:41:06 1407393666444 53 global INFO gsa_snp.GSA getSNPs 23 processing 5100000th SNP... 2014-08-07T07:41:06 1407393666644 54 global INFO gsa_snp.GSA getSNPs 23 processing 5200000th SNP... 2014-08-07T07:41:08 1407393668790 55 global INFO gsa_snp.GSA getSNPs 23 processing 5300000th SNP... 2014-08-07T07:41:08 1407393668852 56 global INFO gsa_snp.GSA getSNPs 23 processing 5400000th SNP... 2014-08-07T07:41:08 1407393668908 57 global INFO gsa_snp.GSA getSNPs 23 processing 5500000th SNP... 2014-08-07T07:41:08 1407393668965 58 global INFO gsa_snp.GSA getSNPs 23 processing 5600000th SNP... 2014-08-07T07:41:09 1407393669021 59 global INFO gsa_snp.GSA getSNPs 23 processing 5700000th SNP... 2014-08-07T07:41:10 1407393670991 60 global INFO gsa_snp.GSA getSNPs 23 processing 5800000th SNP... 2014-08-07T07:41:11 1407393671050 61 global INFO gsa_snp.GSA getSNPs 23 processing 5900000th SNP... 2014-08-07T07:41:11 1407393671110 62 global INFO gsa_snp.GSA getSNPs 23 processing 6000000th SNP... 2014-08-07T07:41:11 1407393671169 63 global INFO gsa_snp.GSA getSNPs 23 processing 6100000th SNP... 2014-08-07T07:41:11 1407393671228 64 global INFO gsa_snp.GSA getSNPs 23 processing 6200000th SNP... 2014-08-07T07:41:17 1407393677465 65 global INFO gsa_snp.MainUI$24 done 15 Done. You can find the results in: output/20140807/074029/