Annotated-class Annotated class AtomicList Lists of Atomic Vectors in Natural and Rle Form DataFrame-class External Data Frame DataFrameList-class List of DataFrames DataTable-API The DataTable API DataTable-stats Statistical modeling with DataTable FilterMatrix-class Matrix for Filter Results FilterRules-class Collection of Filter Rules GappedRanges-class GappedRanges objects Grouping-class Grouping objects Hits-class Set of hits between 2 vector-like objects HitsList-class List of Hits objects IRanges-class IRanges and NormalIRanges objects IRanges-constructor The IRanges constructor and supporting functions IRanges-utils IRanges utility functions IRangesList-class List of IRanges and NormalIRanges IntervalForest-class Interval Search Forests IntervalTree-class Interval Search Trees List-class List objects MaskCollection-class MaskCollection objects RangedData-class Data on ranges RangedDataList-class Lists of RangedData RangedSelection-class Selection of ranges and columns Ranges-class Ranges objects Ranges-comparison Comparing and ordering ranges RangesList-class List of Ranges RangesMapping-class Mapping of ranges to another sequence Rle-class Rle objects RleViews-class The RleViews class RleViewsList-class List of RleViews SimpleList-class Simple and Compressed List Classes Vector-class Vector objects Vector-comparison Compare, order, tabulate vector-like objects Views-class Views objects ViewsList-class List of Views classNameForDisplay Provide a class name for displaying to users coverage-methods Coverage of a set of ranges endoapply Endomorphisms via application of a function over an object's elements expand The expand method for uncompressing compressed data columns extractList Group elements of a vector-like object into a list-like object findOverlaps-methods Finding overlapping ranges funprog-methods Functional programming methods for List objects inter-range-methods Inter range transformations of a Ranges, Views, RangesList, MaskCollection, or RangedData object intra-range-methods Intra range transformations of a Ranges, Views, RangesList, or MaskCollection object isConstant Test if an atomic vector or array is constant multisplit Split elements belonging to multiple groups nearest-methods Finding the nearest range neighbor rdapply Applying over spaces read.Mask Read a mask from a file reverse reverse runstat Fixed width running window summaries across vector-like objects score Score accessor and setter seqapply Apply function and cast to Vector setops-methods Set operations on IRanges, RangesList, and Hits objects slice-methods Slice a vector-like or list-like object unstrsplit Some utility functions to operate on strings updateObject-methods Update an object of a class defined in the IRanges package to its current class definition view-summarization-methods Summarize views on a vector-like object with numeric values