""" Base IO code for all datasets """ # Copyright (c) 2007 David Cournapeau # 2010 Fabian Pedregosa # 2010 Olivier Grisel # License: Simplified BSD import os import csv import shutil from os import environ from os.path import dirname from os.path import join from os.path import exists from os.path import expanduser from os.path import isdir from os import listdir from os import makedirs import numpy as np from ..utils import check_random_state class Bunch(dict): """Container object for datasets: dictionary-like object that exposes its keys as attributes.""" def __init__(self, **kwargs): dict.__init__(self, kwargs) self.__dict__ = self def get_data_home(data_home=None): """Return the path of the scikit-learn data dir. This folder is used by some large dataset loaders to avoid downloading the data several times. By default the data dir is set to a folder named 'scikit_learn_data' in the user home folder. Alternatively, it can be set by the 'SCIKIT_LEARN_DATA' environment variable or programatically by giving an explit folder path. The '~' symbol is expanded to the user home folder. If the folder does not already exist, it is automatically created. """ if data_home is None: data_home = environ.get('SCIKIT_LEARN_DATA', join('~', 'scikit_learn_data')) data_home = expanduser(data_home) if not exists(data_home): makedirs(data_home) return data_home def clear_data_home(data_home=None): """Delete all the content of the data home cache.""" data_home = get_data_home(data_home) shutil.rmtree(data_home) def load_files(container_path, description=None, categories=None, load_content=True, shuffle=True, charset=None, charse_error='strict', random_state=0): """Load text files with categories as subfolder names. Individual samples are assumed to be files stored a two levels folder structure such as the following: container_folder/ category_1_folder/ file_1.txt file_2.txt ... file_42.txt category_2_folder/ file_43.txt file_44.txt ... The folder names are used has supervised signal label names. The indivial file names are not important. This function does not try to extract features into a numpy array or scipy sparse matrix. In addition, if load_content is false it does not try to load the files in memory. To use utf-8 text files in a scikit-learn classification or clustering algorithm you will first need to use the `sklearn.features.text` module to build a feature extraction transformer that suits your problem. Similar feature extractors should be build for other kind of unstructured data input such as images, audio, video, ... Parameters ---------- container_path : string or unicode Path to the main folder holding one subfolder per category description: string or unicode, optional (default=None) A paragraph describing the characteristic of the dataset: its source, reference, etc. categories : A collection of strings or None, optional (default=None) If None (default), load all the categories. If not None, list of category names to load (other categories ignored). load_content : boolean, optional (default=True) Whether to load or not the content of the different files. If true a 'data' attribute containing the text information is present in the data structure returned. If not, a filenames attribute gives the path to the files. charset : string or None (default is None) If None, do not try to decode the content of the files (e.g. for images or other non-text content). If not None, charset to use to decode text files if load_content is True. charset_error: {'strict', 'ignore', 'replace'} Instruction on what to do if a byte sequence is given to analyze that contains characters not of the given `charset`. By default, it is 'strict', meaning that a UnicodeDecodeError will be raised. Other values are 'ignore' and 'replace'. shuffle : bool, optional (default=True) Whether or not to shuffle the data: might be important for models that make the assumption that the samples are independent and identically distributed (i.i.d.), such as stochastic gradient descent. random_state : int, RandomState instance or None, optional (default=0) If int, random_state is the seed used by the random number generator; If RandomState instance, random_state is the random number generator; If None, the random number generator is the RandomState instance used by `np.random`. Returns ------- data : Bunch Dictionary-like object, the interesting attributes are: either data, the raw text data to learn, or 'filenames', the files holding it, 'target', the classification labels (integer index), 'target_names', the meaning of the labels, and 'DESCR', the full description of the dataset. """ target = [] target_names = [] filenames = [] folders = [f for f in sorted(listdir(container_path)) if isdir(join(container_path, f))] if categories is not None: folders = [f for f in folders if f in categories] for label, folder in enumerate(folders): target_names.append(folder) folder_path = join(container_path, folder) documents = [join(folder_path, d) for d in sorted(listdir(folder_path))] target.extend(len(documents) * [label]) filenames.extend(documents) # convert to array for fancy indexing filenames = np.array(filenames) target = np.array(target) if shuffle: random_state = check_random_state(random_state) indices = np.arange(filenames.shape[0]) random_state.shuffle(indices) filenames = filenames[indices] target = target[indices] if load_content: data = [open(filename).read() for filename in filenames] if charset is not None: data = [d.decode(charset, charse_error) for d in data] return Bunch(data=data, filenames=filenames, target_names=target_names, target=target, DESCR=description) return Bunch(filenames=filenames, target_names=target_names, target=target, DESCR=description) def load_iris(): """Load and return the iris dataset (classification). The iris dataset is a classic and very easy multi-class classification dataset. ================= ============== Classes 3 Samples per class 50 Samples total 150 Dimensionality 4 Features real, positive ================= ============== Returns ------- data : Bunch Dictionary-like object, the interesting attributes are: 'data', the data to learn, 'target', the classification labels, 'target_names', the meaning of the labels, 'feature_names', the meaning of the features, and 'DESCR', the full description of the dataset. Examples -------- Let's say you are interested in the samples 10, 25, and 50, and want to know their class name. >>> from sklearn.datasets import load_iris >>> data = load_iris() >>> data.target[[10, 25, 50]] array([0, 0, 1]) >>> list(data.target_names) ['setosa', 'versicolor', 'virginica'] """ module_path = dirname(__file__) data_file = csv.reader(open(join(module_path, 'data', 'iris.csv'))) fdescr = open(join(module_path, 'descr', 'iris.rst')) temp = next(data_file) n_samples = int(temp[0]) n_features = int(temp[1]) target_names = np.array(temp[2:]) data = np.empty((n_samples, n_features)) target = np.empty((n_samples,), dtype=np.int) for i, ir in enumerate(data_file): data[i] = np.asarray(ir[:-1], dtype=np.float) target[i] = np.asarray(ir[-1], dtype=np.int) return Bunch(data=data, target=target, target_names=target_names, DESCR=fdescr.read(), feature_names=['sepal length (cm)', 'sepal width (cm)', 'petal length (cm)', 'petal width (cm)']) def load_digits(n_class=10): """Load and return the digits dataset (classification). Each datapoint is a 8x8 image of a digit. ================= ============== Classes 10 Samples per class ~180 Samples total 1797 Dimensionality 64 Features integers 0-16 ================= ============== Parameters ---------- n_class : integer, between 0 and 10, optional (default=10) The number of classes to return. Returns ------- data : Bunch Dictionary-like object, the interesting attributes are: 'data', the data to learn, 'images', the images corresponding to each sample, 'target', the classification labels for each sample, 'target_names', the meaning of the labels, and 'DESCR', the full description of the dataset. Examples -------- To load the data and visualize the images:: >>> from sklearn.datasets import load_digits >>> digits = load_digits() >>> print digits.data.shape (1797, 64) >>> import pylab as pl #doctest: +SKIP >>> pl.gray() #doctest: +SKIP >>> pl.matshow(digits.images[0]) #doctest: +SKIP >>> pl.show() #doctest: +SKIP """ module_path = dirname(__file__) data = np.loadtxt(join(module_path, 'data', 'digits.csv.gz'), delimiter=',') descr = open(join(module_path, 'descr', 'digits.rst')).read() target = data[:, -1] flat_data = data[:, :-1] images = flat_data.view() images.shape = (-1, 8, 8) if n_class < 10: idx = target < n_class flat_data, target = flat_data[idx], target[idx] images = images[idx] return Bunch(data=flat_data, target=target.astype(np.int), target_names=np.arange(10), images=images, DESCR=descr) def load_diabetes(): """Load and return the diabetes dataset (regression). ============== ================== Samples total 442 Dimensionality 10 Features real, -.2 < x < .2 Targets integer 25 - 346 ============== ================== Returns ------- data : Bunch Dictionary-like object, the interesting attributes are: 'data', the data to learn and 'target', the regression target for each sample. """ base_dir = join(dirname(__file__), 'data') data = np.loadtxt(join(base_dir, 'diabetes_data.csv.gz')) target = np.loadtxt(join(base_dir, 'diabetes_target.csv.gz')) return Bunch(data=data, target=target) def load_linnerud(): """Load and return the linnerud dataset (multivariate regression). Samples total: 20 Dimensionality: 3 for both data and targets Features: integer Targets: integer Returns ------- data : Bunch Dictionary-like object, the interesting attributes are: 'data' and 'targets', the two multivariate datasets, with 'data' corresponding to the exercise and 'targets' corresponding to the physiological measurements, as well as 'feature_names' and 'target_names'. """ base_dir = join(dirname(__file__), 'data/') # Read data data_exercise = np.loadtxt(base_dir + 'linnerud_exercise.csv', skiprows=1) data_physiological = np.loadtxt(base_dir + 'linnerud_physiological.csv', skiprows=1) # Read header with open(base_dir + 'linnerud_exercise.csv') as f: header_exercise = f.readline().split() with open(base_dir + 'linnerud_physiological.csv') as f: header_physiological = f.readline().split() with open(dirname(__file__) + '/descr/linnerud.rst') as f: descr = f.read() return Bunch(data=data_exercise, feature_names=header_exercise, target=data_physiological, target_names=header_physiological, DESCR=descr) def load_boston(): """Load and return the boston house-prices dataset (regression). ============== ============== Samples total 506 Dimensionality 13 Features real, positive Targets real 5. - 50. ============== ============== Returns ------- data : Bunch Dictionary-like object, the interesting attributes are: 'data', the data to learn, 'target', the regression targets, 'target_names', the meaning of the labels, and 'DESCR', the full description of the dataset. Examples -------- >>> from sklearn.datasets import load_boston >>> boston = load_boston() >>> print boston.data.shape (506, 13) """ module_path = dirname(__file__) data_file = csv.reader(open(join(module_path, 'data', 'boston_house_prices.csv'))) fdescr = open(join(module_path, 'descr', 'boston_house_prices.rst')) temp = data_file.next() n_samples = int(temp[0]) n_features = int(temp[1]) data = np.empty((n_samples, n_features)) target = np.empty((n_samples,)) temp = data_file.next() # names of features feature_names = np.array(temp) for i, d in enumerate(data_file): data[i] = np.asarray(d[:-1], dtype=np.float) target[i] = np.asarray(d[-1], dtype=np.float) return Bunch(data=data, target=target, feature_names=feature_names, DESCR=fdescr.read()) def load_sample_images(): """Load sample images for image manipulation. Loads both, ``china`` and ``flower``. Returns ------- data : Bunch Dictionary-like object with the following attributes : 'images', the two sample images, 'filenames', the file names for the images, and 'DESCR' the full description of the dataset. Examples -------- To load the data and visualize the images: >>> from sklearn.datasets import load_sample_images >>> dataset = load_sample_images() #doctest: +SKIP >>> len(dataset.images) #doctest: +SKIP 2 >>> first_img_data = dataset.images[0] #doctest: +SKIP >>> first_img_data.shape #doctest: +SKIP (427, 640, 3) >>> first_img_data.dtype #doctest: +SKIP dtype('uint8') """ # Try to import imread from scipy. We do this lazily here to prevent # this module from depending on PIL. try: try: from scipy.misc import imread except ImportError: from scipy.misc.pilutil import imread except ImportError: raise ImportError("The Python Imaging Library (PIL) " "is required to load data from jpeg files") module_path = join(dirname(__file__), "images") with open(join(module_path, 'README.txt')) as f: descr = f.read() filenames = [join(module_path, filename) for filename in os.listdir(module_path) if filename.endswith(".jpg")] # Load image data for each image in the source folder. images = [imread(filename) for filename in filenames] return Bunch(images=images, filenames=filenames, DESCR=descr) def load_sample_image(image_name): """Load the numpy array of a single sample image Parameters ----------- image_name: {`china.jpg`, `flower.jpg`} The name of the sample image loaded Returns ------- img: 3D array The image as a numpy array: height x width x color Examples --------- >>> from sklearn.datasets import load_sample_image >>> china = load_sample_image('china.jpg') # doctest: +SKIP >>> china.dtype # doctest: +SKIP dtype('uint8') >>> china.shape # doctest: +SKIP (427, 640, 3) >>> flower = load_sample_image('flower.jpg') # doctest: +SKIP >>> flower.dtype # doctest: +SKIP dtype('uint8') >>> flower.shape # doctest: +SKIP (427, 640, 3) """ images = load_sample_images() index = None for i, filename in enumerate(images.filenames): if filename.endswith(image_name): index = i break if index is None: raise AttributeError("Cannot find sample image: %s" % image_name) return images.images[index]