""" fitpack --- curve and surface fitting with splines fitpack is based on a collection of Fortran routines DIERCKX by P. Dierckx (see http://www.netlib.org/dierckx/) transformed to double routines by Pearu Peterson. """ # Created by Pearu Peterson, June,August 2003 __all__ = [ 'UnivariateSpline', 'InterpolatedUnivariateSpline', 'LSQUnivariateSpline', 'BivariateSpline', 'LSQBivariateSpline', 'SmoothBivariateSpline', 'LSQSphereBivariateSpline', 'SmoothSphereBivariateSpline', 'RectBivariateSpline', 'RectSphereBivariateSpline'] import warnings from numpy import zeros, concatenate, alltrue, ravel, all, diff, array, ones import numpy as np import fitpack import dfitpack ################ Univariate spline #################### _curfit_messages = {1:""" The required storage space exceeds the available storage space, as specified by the parameter nest: nest too small. If nest is already large (say nest > m/2), it may also indicate that s is too small. The approximation returned is the weighted least-squares spline according to the knots t[0],t[1],...,t[n-1]. (n=nest) the parameter fp gives the corresponding weighted sum of squared residuals (fp>s). """, 2:""" A theoretically impossible result was found during the iteration proces for finding a smoothing spline with fp = s: s too small. There is an approximation returned but the corresponding weighted sum of squared residuals does not satisfy the condition abs(fp-s)/s < tol.""", 3:""" The maximal number of iterations maxit (set to 20 by the program) allowed for finding a smoothing spline with fp=s has been reached: s too small. There is an approximation returned but the corresponding weighted sum of squared residuals does not satisfy the condition abs(fp-s)/s < tol.""", 10:""" Error on entry, no approximation returned. The following conditions must hold: xb<=x[0]0, i=0..m-1 if iopt=-1: xb>> from numpy import linspace,exp >>> from numpy.random import randn >>> from scipy.interpolate import UnivariateSpline >>> x = linspace(-3, 3, 100) >>> y = exp(-x**2) + randn(100)/10 >>> s = UnivariateSpline(x, y, s=1) >>> xs = linspace(-3, 3, 1000) >>> ys = s(xs) xs,ys is now a smoothed, super-sampled version of the noisy gaussian x,y. """ def __init__(self, x, y, w=None, bbox = [None]*2, k=3, s=None): """ Input: x,y - 1-d sequences of data points (x must be in strictly ascending order) Optional input: w - positive 1-d sequence of weights bbox - 2-sequence specifying the boundary of the approximation interval. By default, bbox=[x[0],x[-1]] k=3 - degree of the univariate spline. s - positive smoothing factor defined for estimation condition: sum((w[i]*(y[i]-s(x[i])))**2,axis=0) <= s Default s=len(w) which should be a good value if 1/w[i] is an estimate of the standard deviation of y[i]. """ #_data == x,y,w,xb,xe,k,s,n,t,c,fp,fpint,nrdata,ier data = dfitpack.fpcurf0(x,y,k,w=w, xb=bbox[0],xe=bbox[1],s=s) if data[-1]==1: # nest too small, setting to maximum bound data = self._reset_nest(data) self._data = data self._reset_class() def _reset_class(self): data = self._data n,t,c,k,ier = data[7],data[8],data[9],data[5],data[-1] self._eval_args = t[:n],c[:n],k if ier==0: # the spline returned has a residual sum of squares fp # such that abs(fp-s)/s <= tol with tol a relative # tolerance set to 0.001 by the program pass elif ier==-1: # the spline returned is an interpolating spline self._set_class(InterpolatedUnivariateSpline) elif ier==-2: # the spline returned is the weighted least-squares # polynomial of degree k. In this extreme case fp gives # the upper bound fp0 for the smoothing factor s. self._set_class(LSQUnivariateSpline) else: # error if ier==1: self._set_class(LSQUnivariateSpline) message = _curfit_messages.get(ier,'ier=%s' % (ier)) warnings.warn(message) def _set_class(self, cls): self._spline_class = cls if self.__class__ in (UnivariateSpline, InterpolatedUnivariateSpline, LSQUnivariateSpline): self.__class__ = cls else: # It's an unknown subclass -- don't change class. cf. #731 pass def _reset_nest(self, data, nest=None): n = data[10] if nest is None: k,m = data[5],len(data[0]) nest = m+k+1 # this is the maximum bound for nest else: if not n <= nest: raise ValueError("`nest` can only be increased") t, c, fpint, nrdata = [np.resize(data[n], nest) for n in [8,9,11,12]] args = data[:8] + (t,c,n,fpint,nrdata,data[13]) data = dfitpack.fpcurf1(*args) return data def set_smoothing_factor(self, s): """ Continue spline computation with the given smoothing factor s and with the knots found at the last call. """ data = self._data if data[6]==-1: warnings.warn('smoothing factor unchanged for' 'LSQ spline with fixed knots') return args = data[:6] + (s,) + data[7:] data = dfitpack.fpcurf1(*args) if data[-1]==1: # nest too small, setting to maximum bound data = self._reset_nest(data) self._data = data self._reset_class() def __call__(self, x, nu=0): """ Evaluate spline (or its nu-th derivative) at positions x. Note: x can be unordered but the evaluation is more efficient if x is (partially) ordered. """ x = np.asarray(x) # empty input yields empty output if x.size == 0: return array([]) # if nu is None: # return dfitpack.splev(*(self._eval_args+(x,))) # return dfitpack.splder(nu=nu,*(self._eval_args+(x,))) return fitpack.splev(x, self._eval_args, der=nu) def get_knots(self): """ Return positions of (boundary and interior) knots of the spline. """ data = self._data k,n = data[5],data[7] return data[8][k:n-k] def get_coeffs(self): """Return spline coefficients.""" data = self._data k,n = data[5],data[7] return data[9][:n-k-1] def get_residual(self): """Return weighted sum of squared residuals of the spline approximation: ``sum((w[i] * (y[i]-s(x[i])))**2, axis=0)``. """ return self._data[10] def integral(self, a, b): """ Return definite integral of the spline between two given points. """ return dfitpack.splint(*(self._eval_args+(a,b))) def derivatives(self, x): """ Return all derivatives of the spline at the point x.""" d,ier = dfitpack.spalde(*(self._eval_args+(x,))) if not ier == 0: raise ValueError("Error code returned by spalde: %s" % ier) return d def roots(self): """ Return the zeros of the spline. Restriction: only cubic splines are supported by fitpack. """ k = self._data[5] if k==3: z,m,ier = dfitpack.sproot(*self._eval_args[:2]) if not ier == 0: raise ValueError("Error code returned by spalde: %s" % ier) return z[:m] raise NotImplementedError('finding roots unsupported for ' 'non-cubic splines') class InterpolatedUnivariateSpline(UnivariateSpline): """ One-dimensional interpolating spline for a given set of data points. Fits a spline y=s(x) of degree `k` to the provided `x`, `y` data. Spline function passes through all provided points. Equivalent to `UnivariateSpline` with s=0. Parameters ---------- x : array_like input dimension of data points -- must be increasing y : array_like input dimension of data points w : array_like, optional Weights for spline fitting. Must be positive. If None (default), weights are all equal. bbox : array_like, optional 2-sequence specifying the boundary of the approximation interval. If None (default), bbox=[x[0],x[-1]]. k : int, optional Degree of the smoothing spline. Must be <= 5. See Also -------- UnivariateSpline : Superclass -- allows knots to be selected by a smoothing condition LSQUnivariateSpline : spline for which knots are user-selected splrep : An older, non object-oriented wrapping of FITPACK splev, sproot, splint, spalde BivariateSpline : A similar class for two-dimensional spline interpolation Notes ----- The number of data points must be larger than the spline degree `k`. Examples -------- >>> from numpy import linspace,exp >>> from numpy.random import randn >>> from scipy.interpolate import UnivariateSpline >>> x = linspace(-3, 3, 100) >>> y = exp(-x**2) + randn(100)/10 >>> s = UnivariateSpline(x, y, s=1) >>> xs = linspace(-3, 3, 1000) >>> ys = s(xs) xs,ys is now a smoothed, super-sampled version of the noisy gaussian x,y """ def __init__(self, x, y, w=None, bbox = [None]*2, k=3): """ Input: x,y - 1-d sequences of data points (x must be in strictly ascending order) Optional input: w - positive 1-d sequence of weights bbox - 2-sequence specifying the boundary of the approximation interval. By default, bbox=[x[0],x[-1]] k=3 - degree of the univariate spline. """ #_data == x,y,w,xb,xe,k,s,n,t,c,fp,fpint,nrdata,ier self._data = dfitpack.fpcurf0(x,y,k,w=w, xb=bbox[0],xe=bbox[1],s=0) self._reset_class() class LSQUnivariateSpline(UnivariateSpline): """ One-dimensional spline with explicit internal knots. Fits a spline y=s(x) of degree `k` to the provided `x`, `y` data. `t` specifies the internal knots of the spline Parameters ---------- x : array_like input dimension of data points -- must be increasing y : array_like input dimension of data points t: array_like interior knots of the spline. Must be in ascending order and bbox[0]>> from numpy import linspace,exp >>> from numpy.random import randn >>> from scipy.interpolate import LSQUnivariateSpline >>> x = linspace(-3,3,100) >>> y = exp(-x**2) + randn(100)/10 >>> t = [-1,0,1] >>> s = LSQUnivariateSpline(x,y,t) >>> xs = linspace(-3,3,1000) >>> ys = s(xs) xs,ys is now a smoothed, super-sampled version of the noisy gaussian x,y with knots [-3,-1,0,1,3] """ def __init__(self, x, y, t, w=None, bbox = [None]*2, k=3): """ Input: x,y - 1-d sequences of data points (x must be in strictly ascending order) t - 1-d sequence of the positions of user-defined interior knots of the spline (t must be in strictly ascending order and bbox[0] 0,axis=0): raise ValueError('Interior knots t must satisfy ' 'Schoenberg-Whitney conditions') data = dfitpack.fpcurfm1(x,y,k,t,w=w,xb=xb,xe=xe) self._data = data[:-3] + (None,None,data[-1]) self._reset_class() ################ Bivariate spline #################### class _BivariateSplineBase(object): """ Base class for Bivariate spline s(x,y) interpolation on the rectangle [xb,xe] x [yb, ye] calculated from a given set of data points (x,y,z). See Also -------- bisplrep, bisplev : an older wrapping of FITPACK BivariateSpline : implementation of bivariate spline interpolation on a plane grid SphereBivariateSpline : implementation of bivariate spline interpolation on a spherical grid """ def get_residual(self): """ Return weighted sum of squared residuals of the spline approximation: sum ((w[i]*(z[i]-s(x[i],y[i])))**2,axis=0) """ return self.fp def get_knots(self): """ Return a tuple (tx,ty) where tx,ty contain knots positions of the spline with respect to x-, y-variable, respectively. The position of interior and additional knots are given as t[k+1:-k-1] and t[:k+1]=b, t[-k-1:]=e, respectively. """ return self.tck[:2] def get_coeffs(self): """ Return spline coefficients.""" return self.tck[2] _surfit_messages = {1:""" The required storage space exceeds the available storage space: nxest or nyest too small, or s too small. The weighted least-squares spline corresponds to the current set of knots.""", 2:""" A theoretically impossible result was found during the iteration process for finding a smoothing spline with fp = s: s too small or badly chosen eps. Weighted sum of squared residuals does not satisfy abs(fp-s)/s < tol.""", 3:""" the maximal number of iterations maxit (set to 20 by the program) allowed for finding a smoothing spline with fp=s has been reached: s too small. Weighted sum of squared residuals does not satisfy abs(fp-s)/s < tol.""", 4:""" No more knots can be added because the number of b-spline coefficients (nx-kx-1)*(ny-ky-1) already exceeds the number of data points m: either s or m too small. The weighted least-squares spline corresponds to the current set of knots.""", 5:""" No more knots can be added because the additional knot would (quasi) coincide with an old one: s too small or too large a weight to an inaccurate data point. The weighted least-squares spline corresponds to the current set of knots.""", 10:""" Error on entry, no approximation returned. The following conditions must hold: xb<=x[i]<=xe, yb<=y[i]<=ye, w[i]>0, i=0..m-1 If iopt==-1, then xb10: tx1,ty1,c,fp,ier = dfitpack.surfit_lsq(x,y,z,tx1,ty1,w,\ xb,xe,yb,ye,\ kx,ky,eps,lwrk2=ier) if ier in [0,-1,-2]: # normal return pass else: if ier<-2: deficiency = (nx-kx-1)*(ny-ky-1)+ier message = _surfit_messages.get(-3) % (deficiency) else: message = _surfit_messages.get(ier, 'ier=%s' % (ier)) warnings.warn(message) self.fp = fp self.tck = tx1, ty1, c self.degrees = kx, ky class RectBivariateSpline(BivariateSpline): """ Bivariate spline approximation over a rectangular mesh. Can be used for both smoothing and interpolating data. Parameters ---------- x,y : array_like 1-D arrays of coordinates in strictly ascending order. z : array_like 2-D array of data with shape (x.size,y.size). bbox : array_like, optional Sequence of length 4 specifying the boundary of the rectangular approximation domain. By default, ``bbox=[min(x,tx),max(x,tx), min(y,ty),max(y,ty)]``. kx, ky : ints, optional Degrees of the bivariate spline. Default is 3. s : float, optional Positive smoothing factor defined for estimation condition: ``sum((w[i]*(z[i]-s(x[i],y[i])))**2,axis=0) <= s`` Default is s=0, which is for interpolation. See Also -------- SmoothBivariateSpline : a smoothing bivariate spline for scattered data bisplrep, bisplev : an older wrapping of FITPACK UnivariateSpline : a similar class for univariate spline interpolation """ def __init__(self, x, y, z, bbox=[None] * 4, kx=3, ky=3, s=0): x, y = ravel(x), ravel(y) if not all(diff(x) > 0.0): raise TypeError('x must be strictly increasing') if not all(diff(y) > 0.0): raise TypeError('y must be strictly increasing') if not ((x.min() == x[0]) and (x.max() == x[-1])): raise TypeError('x must be strictly ascending') if not ((y.min() == y[0]) and (y.max() == y[-1])): raise TypeError('y must be strictly ascending') if not x.size == z.shape[0]: raise TypeError('x dimension of z must have same number of ' 'elements as x') if not y.size == z.shape[1]: raise TypeError('y dimension of z must have same number of ' 'elements as y') z = ravel(z) xb, xe, yb, ye = bbox nx, tx, ny, ty, c, fp, ier = dfitpack.regrid_smth(x, y, z, xb, xe, yb, ye, kx, ky, s) if not ier in [0, -1, -2]: msg = _surfit_messages.get(ier, 'ier=%s' % (ier)) raise ValueError(msg) self.fp = fp self.tck = tx[:nx], ty[:ny], c[:(nx - kx - 1) * (ny - ky - 1)] self.degrees = kx, ky _spherefit_messages = _surfit_messages.copy() _spherefit_messages[10] = """ ERROR. On entry, the input data are controlled on validity. The following restrictions must be satisfied: -1<=iopt<=1, m>=2, ntest>=8 ,npest >=8, 00, i=1,...,m lwrk1 >= 185+52*v+10*u+14*u*v+8*(u-1)*v**2+8*m kwrk >= m+(ntest-7)*(npest-7) if iopt=-1: 8<=nt<=ntest , 9<=np<=npest 0=0: s>=0 if one of these conditions is found to be violated,control is immediately repassed to the calling program. in that case there is no approximation returned.""" _spherefit_messages[-3] = """ WARNING. The coefficients of the spline returned have been computed as the minimal norm least-squares solution of a (numerically) rank deficient system (deficiency=%i, rank=%i). Especially if the rank deficiency, which is computed by 6+(nt-8)*(np-7)+ier, is large, the results may be inaccurate. They could also seriously depend on the value of eps.""" class SphereBivariateSpline(_BivariateSplineBase): """ Bivariate spline s(x,y) of degrees 3 on a sphere, calculated from a given set of data points (theta,phi,r). See Also -------- bisplrep, bisplev : an older wrapping of FITPACK UnivariateSpline : a similar class for univariate spline interpolation SmoothUnivariateSpline : to create a BivariateSpline through the given points LSQUnivariateSpline : to create a BivariateSpline using weighted least-squares fitting """ def __call__(self, theta, phi): """ Evaluate the spline at the grid ponts defined by the coordinate arrays theta, phi. """ theta = np.asarray(theta) phi = np.asarray(phi) # empty input yields empty output if (theta.size == 0) and (phi.size == 0): return array([]) if theta.min() < 0. or theta.max() > np.pi: raise ValueError("requested theta out of bounds.") if phi.min() < 0. or phi.max() > 2. * np.pi: raise ValueError("requested phi out of bounds.") tx, ty, c = self.tck[:3] kx, ky = self.degrees z, ier = dfitpack.bispev(tx, ty, c, kx, ky, theta, phi) if not ier == 0: raise ValueError("Error code returned by bispev: %s" % ier) return z def ev(self, thetai, phii): """ Evaluate the spline at the points (theta[i], phi[i]), i=0,...,len(theta)-1 """ thetai = np.asarray(thetai) phii = np.asarray(phii) # empty input yields empty output if (thetai.size == 0) and (phii.size == 0): return array([]) if thetai.min() < 0. or thetai.max() > np.pi: raise ValueError("requested thetai out of bounds.") if phii.min() < 0. or phii.max() > 2. * np.pi: raise ValueError("requested phii out of bounds.") tx, ty, c = self.tck[:3] kx, ky = self.degrees zi, ier = dfitpack.bispeu(tx, ty, c, kx, ky, thetai, phii) if not ier == 0: raise ValueError("Error code returned by bispeu: %s" % ier) return zi class SmoothSphereBivariateSpline(SphereBivariateSpline): """ Smooth bivariate spline approximation in spherical coordinates. Parameters ---------- theta, phi, r : array_like 1-D sequences of data points (order is not important). Coordinates must be given in radians. Theta must lie within the interval (0, pi), and phi must lie within the interval (0, 2pi). w : array_like, optional Positive 1-D sequence of weights. s : float, optional Positive smoothing factor defined for estimation condition: ``sum((w(i)*(r(i)-s(theta(i),phi(i))))**2,axis=0) <= s`` Default ``s=len(w)`` which should be a good value if 1/w[i] is an estimate of the standard deviation of r[i]. eps : float, optional A threshold for determining the effective rank of an over-determined linear system of equations. `eps` should have a value between 0 and 1, the default is 1e-16. Notes ----- For more information, see the FITPACK_ site about this function. .. _FITPACK: http://www.netlib.org/dierckx/sphere.f .. versionadded:: 0.11.0 Examples -------- Suppose we have global data on a coarse grid (the input data does not have to be on a grid): >>> theta = np.linspace(0., np.pi, 7) >>> phi = np.linspace(0., 2*np.pi, 9) >>> data = np.empty((theta.shape[0], phi.shape[0])) >>> data[:,0], data[0,:], data[-1,:] = 0., 0., 0. >>> data[1:-1,1], data[1:-1,-1] = 1., 1. >>> data[1,1:-1], data[-2,1:-1] = 1., 1. >>> data[2:-2,2], data[2:-2,-2] = 2., 2. >>> data[2,2:-2], data[-3,2:-2] = 2., 2. >>> data[3,3:-2] = 3. >>> data = np.roll(data, 4, 1) We need to set up the interpolator object >>> lats, lons = np.meshgrid(theta, phi) >>> from scipy.interpolate import SmoothSphereBivariateSpline >>> lut = SmoothSphereBivariateSpline(lats.ravel(), lons.ravel(), data.T.ravel(),s=3.5) As a first test, we'll see what the algorithm returns when run on the input coordinates >>> data_orig = lut(theta, phi) Finally we interpolate the data to a finer grid >>> fine_lats = np.linspace(0., np.pi, 70) >>> fine_lons = np.linspace(0., 2 * np.pi, 90) >>> data_smth = lut(fine_lats, fine_lons) >>> fig = plt.figure() >>> ax1 = fig.add_subplot(131) >>> ax1.imshow(data, interpolation='nearest') >>> ax2 = fig.add_subplot(132) >>> ax2.imshow(data_orig, interpolation='nearest') >>> ax3 = fig.add_subplot(133) >>> ax3.imshow(data_smth, interpolation='nearest') >>> plt.show() """ def __init__(self, theta, phi, r, w=None, s=0., eps=1E-16): if np.issubclass_(w, float): w = ones(len(theta)) * w nt_, tt_, np_, tp_, c, fp, ier = dfitpack.spherfit_smth(theta, phi, r, w=w, s=s, eps=eps) if not ier in [0, -1, -2]: message = _spherefit_messages.get(ier, 'ier=%s' % (ier)) raise ValueError(message) self.fp = fp self.tck = tt_[:nt_], tp_[:np_], c[:(nt_ - 4) * (np_ - 4)] self.degrees = (3, 3) class LSQSphereBivariateSpline(SphereBivariateSpline): """ Weighted least-squares bivariate spline approximation in spherical coordinates. Parameters ---------- theta, phi, r : array_like 1-D sequences of data points (order is not important). Coordinates must be given in radians. Theta must lie within the interval (0, pi), and phi must lie within the interval (0, 2pi). tt, tp : array_like Strictly ordered 1-D sequences of knots coordinates. Coordinates must satisfy ``0>> theta = np.linspace(0., np.pi, 7) >>> phi = np.linspace(0., 2*np.pi, 9) >>> data = np.empty((theta.shape[0], phi.shape[0])) >>> data[:,0], data[0,:], data[-1,:] = 0., 0., 0. >>> data[1:-1,1], data[1:-1,-1] = 1., 1. >>> data[1,1:-1], data[-2,1:-1] = 1., 1. >>> data[2:-2,2], data[2:-2,-2] = 2., 2. >>> data[2,2:-2], data[-3,2:-2] = 2., 2. >>> data[3,3:-2] = 3. >>> data = np.roll(data, 4, 1) We need to set up the interpolator object. Here, we must also specify the coordinates of the knots to use. >>> lats, lons = np.meshgrid(theta, phi) >>> knotst, knotsp = theta.copy(), phi.copy() >>> knotst[0] += .0001 >>> knotst[-1] -= .0001 >>> knotsp[0] += .0001 >>> knotsp[-1] -= .0001 >>> from scipy.interpolate import LSQSphereBivariateSpline >>> lut = LSQSphereBivariateSpline(lats.ravel(), lons.ravel(), data.T.ravel(),knotst,knotsp) As a first test, we'll see what the algorithm returns when run on the input coordinates >>> data_orig = lut(theta, phi) Finally we interpolate the data to a finer grid >>> fine_lats = np.linspace(0., np.pi, 70) >>> fine_lons = np.linspace(0., 2*np.pi, 90) >>> data_lsq = lut(fine_lats, fine_lons) >>> fig = plt.figure() >>> ax1 = fig.add_subplot(131) >>> ax1.imshow(data, interpolation='nearest') >>> ax2 = fig.add_subplot(132) >>> ax2.imshow(data_orig, interpolation='nearest') >>> ax3 = fig.add_subplot(133) >>> ax3.imshow(data_lsq, interpolation='nearest') >>> plt.show() """ def __init__(self, theta, phi, r, tt, tp, w=None, eps=1E-16): if np.issubclass_(w, float): w = ones(len(theta)) * w nt_, np_ = 8 + len(tt), 8 + len(tp) tt_, tp_ = zeros((nt_,), float), zeros((np_,), float) tt_[4:-4], tp_[4:-4] = tt, tp tt_[-4:], tp_[-4:] = np.pi, 2. * np.pi tt_, tp_, c, fp, ier = dfitpack.spherfit_lsq(theta, phi, r, tt_, tp_, w=w, eps=eps) if ier < -2: deficiency = 6 + (nt_ - 8) * (np_ - 7) + ier message = _spherefit_messages.get(-3) % (deficiency, -ier) warnings.warn(message) elif not ier in [0, -1, -2]: message = _spherefit_messages.get(ier, 'ier=%s' % (ier)) raise ValueError(message) self.fp = fp self.tck = tt_, tp_, c self.degrees = (3, 3) _spfit_messages = _surfit_messages.copy() _spfit_messages[10] = """ ERROR: on entry, the input data are controlled on validity the following restrictions must be satisfied. -1<=iopt(1)<=1, 0<=iopt(2)<=1, 0<=iopt(3)<=1, -1<=ider(1)<=1, 0<=ider(2)<=1, ider(2)=0 if iopt(2)=0. -1<=ider(3)<=1, 0<=ider(4)<=1, ider(4)=0 if iopt(3)=0. mu >= mumin (see above), mv >= 4, nuest >=8, nvest >= 8, kwrk>=5+mu+mv+nuest+nvest, lwrk >= 12+nuest*(mv+nvest+3)+nvest*24+4*mu+8*mv+max(nuest,mv+nvest) 0< u(i-1)=0: s>=0 if s=0: nuest>=mu+6+iopt(2)+iopt(3), nvest>=mv+7 if one of these conditions is found to be violated,control is immediately repassed to the calling program. in that case there is no approximation returned.""" class RectSphereBivariateSpline(SphereBivariateSpline): """ Bivariate spline approximation over a rectangular mesh on a sphere. Can be used for smoothing data. Parameters ---------- u : array_like 1-D array of latitude coordinates in strictly ascending order. Coordinates must be given in radians and lie within the interval (0, pi). v : array_like 1-D array of longitude coordinates in strictly ascending order. Coordinates must be given in radians, and must lie within (0, 2pi). r : array_like 2-D array of data with shape (u.size, v.size). s : float, optional Positive smoothing factor defined for estimation condition (``s=0`` is for interpolation). pole_continuity : bool or (bool, bool), optional Order of continuity at the poles ``u=0`` (``pole_continuity[0]``) and ``u=pi`` (``pole_continuity[1]``). The order of continuity at the pole will be 1 or 0 when this is True or False, respectively. Defaults to False. pole_values : float or (float, float), optional Data values at the poles ``u=0`` and ``u=pi``. Either the whole parameter or each individual element can be None. Defaults to None. pole_exact : bool or (bool, bool), optional Data value exactness at the poles ``u=0`` and ``u=pi``. If True, the value is considered to be the right function value, and it will be fitted exactly. If False, the value will be considered to be a data value just like the other data values. Defaults to False. pole_flat : bool or (bool, bool), optional For the poles at ``u=0`` and ``u=pi``, specify whether or not the approximation has vanishing derivatives. Defaults to False. See Also -------- RectBivariateSpline : bivariate spline approximation over a rectangular mesh Notes ----- Currently, only the smoothing spline approximation (``iopt[0] = 0`` and ``iopt[0] = 1`` in the FITPACK routine) is supported. The exact least-squares spline approximation is not implemented yet. When actually performing the interpolation, the requested `v` values must lie within the same length 2pi interval that the original `v` values were chosen from. For more information, see the FITPACK_ site about this function. .. _FITPACK: http://www.netlib.org/dierckx/spgrid.f .. versionadded:: 0.11.0 Examples -------- Suppose we have global data on a coarse grid >>> lats = np.linspace(10, 170, 9) * np.pi / 180. >>> lons = np.linspace(0, 350, 18) * np.pi / 180. >>> data = np.dot(np.atleast_2d(90. - np.linspace(-80., 80., 18)).T, np.atleast_2d(180. - np.abs(np.linspace(0., 350., 9)))).T We want to interpolate it to a global one-degree grid >>> new_lats = np.linspace(1, 180, 180) * np.pi / 180 >>> new_lons = np.linspace(1, 360, 360) * np.pi / 180 >>> new_lats, new_lons = np.meshgrid(new_lats, new_lons) We need to set up the interpolator object >>> from scipy.interpolate import RectSphereBivariateSpline >>> lut = RectSphereBivariateSpline(lats, lons, data) Finally we interpolate the data. The `RectSphereBivariateSpline` object only takes 1-D arrays as input, therefore we need to do some reshaping. >>> data_interp = lut.ev(new_lats.ravel(), ... new_lons.ravel()).reshape((360, 180)).T Looking at the original and the interpolated data, one can see that the interpolant reproduces the original data very well: >>> fig = plt.figure() >>> ax1 = fig.add_subplot(211) >>> ax1.imshow(data, interpolation='nearest') >>> ax2 = fig.add_subplot(212) >>> ax2.imshow(data_interp, interpolation='nearest') >>> plt.show() Chosing the optimal value of ``s`` can be a delicate task. Recommended values for ``s`` depend on the accuracy of the data values. If the user has an idea of the statistical errors on the data, she can also find a proper estimate for ``s``. By assuming that, if she specifies the right ``s``, the interpolator will use a spline ``f(u,v)`` which exactly reproduces the function underlying the data, she can evaluate ``sum((r(i,j)-s(u(i),v(j)))**2)`` to find a good estimate for this ``s``. For example, if she knows that the statistical errors on her ``r(i,j)``-values are not greater than 0.1, she may expect that a good ``s`` should have a value not larger than ``u.size * v.size * (0.1)**2``. If nothing is known about the statistical error in ``r(i,j)``, ``s`` must be determined by trial and error. The best is then to start with a very large value of ``s`` (to determine the least-squares polynomial and the corresponding upper bound ``fp0`` for ``s``) and then to progressively decrease the value of ``s`` (say by a factor 10 in the beginning, i.e. ``s = fp0 / 10, fp0 / 100, ...`` and more carefully as the approximation shows more detail) to obtain closer fits. The interpolation results for different values of ``s`` give some insight into this process: >>> fig2 = plt.figure() >>> s = [3e9, 2e9, 1e9, 1e8] >>> for ii in xrange(len(s)): >>> lut = RectSphereBivariateSpline(lats, lons, data, s=s[ii]) >>> data_interp = lut.ev(new_lats.ravel(), ... new_lons.ravel()).reshape((360, 180)).T >>> ax = fig2.add_subplot(2, 2, ii+1) >>> ax.imshow(data_interp, interpolation='nearest') >>> ax.set_title("s = %g" % s[ii]) >>> plt.show() """ def __init__(self, u, v, r, s=0., pole_continuity=False, pole_values=None, pole_exact=False, pole_flat=False): iopt = np.array([0, 0, 0], dtype=int) ider = np.array([-1, 0, -1, 0], dtype=int) if pole_values is None: pole_values = (None, None) elif isinstance(pole_values, (float, np.float32, np.float64)): pole_values = (pole_values, pole_values) if isinstance(pole_continuity, bool): pole_continuity = (pole_continuity, pole_continuity) if isinstance(pole_exact, bool): pole_exact = (pole_exact, pole_exact) if isinstance(pole_flat, bool): pole_flat = (pole_flat, pole_flat) r0, r1 = pole_values iopt[1:] = pole_continuity if r0 is None: ider[0] = -1 else: ider[0] = pole_exact[0] if r1 is None: ider[2] = -1 else: ider[2] = pole_exact[1] ider[1], ider[3] = pole_flat u, v = np.ravel(u), np.ravel(v) if not np.all(np.diff(u) > 0.0): raise TypeError('u must be strictly increasing') if not np.all(np.diff(v) > 0.0): raise TypeError('v must be strictly increasing') if not u.size == r.shape[0]: raise TypeError('u dimension of r must have same number of ' 'elements as u') if not v.size == r.shape[1]: raise TypeError('v dimension of r must have same number of ' 'elements as v') if pole_continuity[1] is False and pole_flat[1] is True: raise TypeError('if pole_continuity is False, so must be ' 'pole_flat') if pole_continuity[0] is False and pole_flat[0] is True: raise TypeError('if pole_continuity is False, so must be ' 'pole_flat') r = np.ravel(r) nu, tu, nv, tv, c, fp, ier = dfitpack.regrid_smth_spher(iopt, ider, u.copy(), v.copy(), r.copy(), r0, r1, s) if not ier in [0, -1, -2]: msg = _spfit_messages.get(ier, 'ier=%s' % (ier)) raise ValueError(msg) self.fp = fp self.tck = tu[:nu], tv[:nv], c[:(nu - 4) * (nv-4)] self.degrees = (3, 3)